Comamonas odontotermitis strain WLL plasmid unnamed2, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.
Submitted (13-SEP-2021) College of Resources and Environmental Sciences, Nanjing Agricultural University, Weigang1#, Nanjing, Jiangsu 210095, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP083453.1.\nBacteria and source DNA available from Jiangsu Provincial Key Lab\nof Solid Organic Waste Utilization,Nanjing Agricultural University,\nNanjing 210095, Jiangsu, Peoples R China.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP 2.3 v. March-2019\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 120.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/16/2022 03:30:38\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,452\nCDSs (total) :: 4,350\nGenes (coding) :: 4,296\nCDSs (with protein) :: 4,296\nGenes (RNA) :: 102\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 81\nncRNAs :: 3\nPseudo Genes (total) :: 54\nCDSs (without protein) :: 54\nPseudo Genes (ambiguous residues) :: 0 of 54\nPseudo Genes (frameshifted) :: 17 of 54\nPseudo Genes (incomplete) :: 42 of 54\nPseudo Genes (internal stop) :: 5 of 54\nPseudo Genes (multiple problems) :: 8 of 54\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF015218.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013670.2
COORDINATES: similar to AA sequence:RefSeq:WP_009890252.1
COORDINATES: similar to AA sequence:RefSeq:WP_009179774.1
Com family DNA-binding transcriptional regulator
COORDINATES: protein motif:HMM:NF025659.2
COORDINATES: protein motif:HMM:NF020388.2
COORDINATES: protein motif:HMM:NF017343.2
COORDINATES: similar to AA sequence:RefSeq:WP_019725890.1
GO:0044423 - virion component [Evidence IEA]
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0019068 - virion assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013971307.1
COORDINATES: similar to AA sequence:RefSeq:WP_011794752.1
COORDINATES: similar to AA sequence:RefSeq:WP_019725887.1
COORDINATES: similar to AA sequence:RefSeq:WP_019725886.1
COORDINATES: protein motif:HMM:TIGR01558.1
phage terminase small subunit P27 family
COORDINATES: similar to AA sequence:RefSeq:WP_011794749.1
COORDINATES: protein motif:HMM:NF017116.2
COORDINATES: protein motif:HMM:NF012920.2
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_020190898.1
COORDINATES: similar to AA sequence:RefSeq:WP_004552588.1
COORDINATES: similar to AA sequence:RefSeq:WP_009964475.1