Paenarthrobacter ureafaciens strain DnL1-1 plasmid pADNL2.
type: Entry
definition: Paenarthrobacter ureafaciens strain DnL1-1 plasmid pADNL2.
sequence version: NZ_CP014576.1
sequence date: 2023-04-07
sequence: sequence
division: CON
label: NZ_CP014576.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN04508133
keyword: RefSeq
source: Paenarthrobacter ureafaciens
organism: Paenarthrobacter ureafaciens
taxonomy: Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Paenarthrobacter.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP014576.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT Portal v. v.2.3.0\nGenome Coverage :: 138.57x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 04:06:59\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,386\nCDSs (total) :: 4,312\nGenes (coding) :: 4,223\nCDSs (with protein) :: 4,223\nGenes (RNA) :: 74\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 53\nncRNAs :: 3\nPseudo Genes (total) :: 89\nCDSs (without protein) :: 89\nPseudo Genes (ambiguous residues) :: 0 of 89\nPseudo Genes (frameshifted) :: 47 of 89\nPseudo Genes (incomplete) :: 52 of 89\nPseudo Genes (internal stop) :: 7 of 89\nPseudo Genes (multiple problems) :: 15 of 89\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000155
sequence length: 24643
topology: linear
so has quality: SO_0000987
location: 1..24643
location: region:1-24643:1
RO_0002162: 37931

NZ_CP014576
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN04508133
type: BioSample
SIO_000068: biosample

1
title: Atrazine-degrading Arthrobacter ureafaciens strain isolated from rhizosphere soil of maize plants with a history of atrazine application
author: Li, C.
author: Bazhanov, D.P.
author: Li, H.
author: Yang, H.
author: Li, J.
journal: Unpublished

2
title: Direct Submission
author: Li, C.
author: Bazhanov, D.P.
author: Li, H.
author: Yang, H.
author: Li, J.
journal: Submitted (17-FEB-2016) Shandong Academy of Sciences, Biology Institute, No. 19 Keyuan Road, Lixia District, Jinan, Shandong 250014, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24643:1
position: 24643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-24643:1:source
so part of: sequence
organism: Paenarthrobacter ureafaciens
mol type: genomic DNA
strain: DnL1-1
isolation source: Soil cores containing the root system of one maize plant
culture collection: CGMCC:9667
plasmid: pADNL2
country: China: Shandong, weifang Prefecture, dajiawa town, liulou village
lat lon: 35.09441 N 115.66002 E
collection date: 2013-07-23
collected by: Biology Institute of Shandong Academy of Sciences

37931
type: Taxonomy
SIO_000068: taxonomy

AYX19_RS21720
type: Gene
subclass of: SO_0000704
RO_0002162: 37931
gene: acs
locus tag: AYX19_RS21720
old locus tag: AYX19_21635
pseudo: true
so part of: sequence
location: 269..2274
location: region:269-2274:1
so has part: feature:269-2274:1:exon
subclass of: SO_0000010

79886455
type: Gene
SIO_000068: ncbigene

position:269:1
position: 269
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2274:1
position: 2274
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:269-2274:1:exon

AYX19_RS21720
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 37931
gene: acs
locus tag: AYX19_RS21720
old locus tag: AYX19_21635
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013602294.1
GO function: GO:0003987 - acetate-CoA ligase activity [Evidence IEA]
GO process: GO:0019427 - acetyl-CoA biosynthetic process from acetate [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: acetate--CoA ligase
SIO_010081: AYX19_RS21720
subclass of: SO_0000673
so part of: AYX19_RS21720
location: 269..2274
location: region:269-2274:1
so has part: feature:269-2274:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:269-2274:1:exon

AYX19_RS21725
type: Gene
subclass of: SO_0000704
RO_0002162: 37931
locus tag: AYX19_RS21725
pseudo: true
so part of: sequence
location: <2578..>2713
location: region:2578-2713:1
so has part: feature:2578-2713:1:exon
subclass of: SO_0000010

79886456
type: Gene
SIO_000068: ncbigene

position:2578:1
position: 2578
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:2713:1
position: 2713
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2578-2713:1:exon

AYX19_RS21725
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 37931
locus tag: AYX19_RS21725
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016236504.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: recombinase family protein
SIO_010081: AYX19_RS21725
subclass of: SO_0000673
so part of: AYX19_RS21725
location: <2578..>2713
location: region:2578-2713:1
so has part: feature:2578-2713:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2578-2713:1:exon

AYX19_RS21730
type: Gene
subclass of: SO_0000704
RO_0002162: 37931
locus tag: AYX19_RS21730
old locus tag: AYX19_21640
so part of: sequence
location: 3589..3969
location: region:3589-3969:1
so has part: feature:3589-3969:1:exon
subclass of: SO_0000010

79886457
type: Gene
SIO_000068: ncbigene

position:3589:1
position: 3589
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3969:1
position: 3969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3589-3969:1:exon

AYX19_RS21730
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 37931
locus tag: AYX19_RS21730
old locus tag: AYX19_21640
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVARRVEEREADHLAVEMFETAIADRPYVSNDNPFSESGFRTMKYRPGYPRVFKELETAGPTLPTTSPGTTPNTKHSGIALFSPSQVHDGSWKELWKTRDQALQRYYDKKSRTLPPAPQHPTPDRL
SIO_010081: AYX19_RS21730
subclass of: SO_0000673
so part of: AYX19_RS21730
location: 3589..3969
location: region:3589-3969:1
so has part: feature:3589-3969:1:exon

WP_207606048.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3589-3969:1:exon

AYX19_RS21735
type: Gene
subclass of: SO_0000704
RO_0002162: 37931
locus tag: AYX19_RS21735
old locus tag: AYX19_21645
pseudo: true
so part of: sequence
location: complement(<4375..5109)
location: region:4375-5109:-1
so has part: feature:4375-5109:-1:exon
subclass of: SO_0000010

79886458
type: Gene
SIO_000068: ncbigene

position:4375:-1
position: 4375
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:5109:-1
position: 5109
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4375-5109:-1:exon

AYX19_RS21735
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 37931
locus tag: AYX19_RS21735
old locus tag: AYX19_21645
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014921558.1
note: frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: FadR/GntR family transcriptional regulator
SIO_010081: AYX19_RS21735
subclass of: SO_0000673
so part of: AYX19_RS21735
location: complement(<4375..5109)
location: region:4375-5109:-1
so has part: feature:4375-5109:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4375-5109:-1:exon

AYX19_RS21745
type: Gene
subclass of: SO_0000704
RO_0002162: 37931
locus tag: AYX19_RS21745
pseudo: true
so part of: sequence
location: <5843..6091
location: region:5843-6091:1
so has part: feature:5843-6091:1:exon
subclass of: SO_0000010

79886459
type: Gene
SIO_000068: ncbigene

position:5843:1
position: 5843
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:6091:1
position: 6091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5843-6091:1:exon

AYX19_RS21745
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 37931
locus tag: AYX19_RS21745
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013162088.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS30 family transposase
SIO_010081: AYX19_RS21745
subclass of: SO_0000673
so part of: AYX19_RS21745
location: <5843..6091
location: region:5843-6091:1
so has part: feature:5843-6091:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5843-6091:1:exon

AYX19_RS21750
type: Gene
subclass of: SO_0000704
RO_0002162: 37931
locus tag: AYX19_RS21750
old locus tag: AYX19_21655
so part of: sequence
location: 6681..7424
location: region:6681-7424:1
so has part: feature:6681-7424:1:exon
subclass of: SO_0000010

79886460
type: Gene
SIO_000068: ncbigene

position:6681:1
position: 6681
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7424:1
position: 7424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6681-7424:1:exon

AYX19_RS21750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 37931
locus tag: AYX19_RS21750
old locus tag: AYX19_21655
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017831726.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF5058 family protein
translation: MHASDAPPSESSDILAVAGSPILWGSVVAVFAVIAIQTVIYYQAASRAAPNVGLERKEVTRAFRAGAIASIGPSLAVSLIAITLVSVFGTPGVLQRIGLIGSAAFDVAAAGIVAGTEGTTLGGEGYTQQVFANVLLCIAIAGAGWMLVTLTATPLLKRGQGAVERGKNKALMGLISSAALLGAFICFTYQQAARGFGPLLVLIASGLIMAALLLIAKTFRQHWLREWALGIALVASLAFATSYPLSA
SIO_010081: AYX19_RS21750
subclass of: SO_0000673
so part of: AYX19_RS21750
location: 6681..7424
location: region:6681-7424:1
so has part: feature:6681-7424:1:exon

WP_207606057.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6681-7424:1:exon

AYX19_RS21755
type: Gene
subclass of: SO_0000704
RO_0002162: 37931
locus tag: AYX19_RS21755
so part of: sequence
location: 7722..7958
location: region:7722-7958:1
so has part: feature:7722-7958:1:exon
subclass of: SO_0000010

79886461
type: Gene
SIO_000068: ncbigene

position:7722:1
position: 7722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7958:1
position: 7958
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7722-7958:1:exon

AYX19_RS21755
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 37931
locus tag: AYX19_RS21755
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIGNIANKLLPAAIVAQSAVNAKPETKRGQLASVLGICGAAAVHLATLAVAVGLFGTLLISIIPPELINTVQTYVLPP
SIO_010081: AYX19_RS21755
subclass of: SO_0000673
so part of: AYX19_RS21755
location: 7722..7958
location: region:7722-7958:1
so has part: feature:7722-7958:1:exon

WP_207606059.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7722-7958:1:exon

AYX19_RS21760
type: Gene
subclass of: SO_0000704
RO_0002162: 37931
locus tag: AYX19_RS21760
old locus tag: AYX19_21665
pseudo: true
so part of: sequence
location: 8515..9618
location: region:8515-9618:1
so has part: feature:8515-9618:1:exon
subclass of: SO_0000010

79886462
type: Gene
SIO_000068: ncbigene

position:8515:1
position: 8515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9618:1
position: 9618
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8515-9618:1:exon

AYX19_RS21760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 37931
locus tag: AYX19_RS21760
old locus tag: AYX19_21665
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005203175.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: site-specific integrase
SIO_010081: AYX19_RS21760
subclass of: SO_0000673
so part of: AYX19_RS21760
location: 8515..9618
location: region:8515-9618:1
so has part: feature:8515-9618:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8515-9618:1:exon

AYX19_RS21765
type: Gene
subclass of: SO_0000704
RO_0002162: 37931
locus tag: AYX19_RS21765
pseudo: true
so part of: sequence
location: 9615..9945
location: region:9615-9945:1
so has part: feature:9615-9945:1:exon
subclass of: SO_0000010

79886463
type: Gene
SIO_000068: ncbigene

position:9615:1
position: 9615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9945:1
position: 9945
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9615-9945:1:exon

AYX19_RS21765
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 37931
locus tag: AYX19_RS21765
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009678361.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
SIO_010081: AYX19_RS21765
subclass of: SO_0000673
so part of: AYX19_RS21765
location: 9615..9945
location: region:9615-9945:1
so has part: feature:9615-9945:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9615-9945:1:exon

AYX19_RS21770
type: Gene
subclass of: SO_0000704
RO_0002162: 37931
locus tag: AYX19_RS21770
old locus tag: AYX19_21675
pseudo: true
so part of: sequence
location: 10124..11462
location: region:10124-11462:1
so has part: feature:10124-11462:1:exon
subclass of: SO_0000010

79886464
type: Gene
SIO_000068: ncbigene

position:10124:1
position: 10124
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11462:1
position: 11462
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10124-11462:1:exon

AYX19_RS21770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 37931
locus tag: AYX19_RS21770
old locus tag: AYX19_21675
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005075796.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: recombinase XerD
SIO_010081: AYX19_RS21770
subclass of: SO_0000673
so part of: AYX19_RS21770
location: 10124..11462
location: region:10124-11462:1
so has part: feature:10124-11462:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10124-11462:1:exon

AYX19_RS21775
type: Gene
subclass of: SO_0000704
RO_0002162: 37931
locus tag: AYX19_RS21775
old locus tag: AYX19_21680
so part of: sequence
location: 11519..12220
location: region:11519-12220:1
so has part: feature:11519-12220:1:exon
subclass of: SO_0000010

79886465
type: Gene
SIO_000068: ncbigene

position:11519:1
position: 11519
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12220:1
position: 12220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11519-12220:1:exon

AYX19_RS21775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 37931
locus tag: AYX19_RS21775
old locus tag: AYX19_21680
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSSESPDHWVYVVTDIEVDGPWPGPNSMRSFASVAITLDGTEHGRFEAVLEELPGAAPNQQTLAWFQSIPDVWEAATTDPEPAPDVMARYASWVKSLPGQKCFAASPLAFDGLWIDFYLRRFTRYGIIQGPYEDDRVFDGTGLCLRSYAAAVTGRPASEIASELADRVVRRRTAHAPRDRRCSRIRQPPRHPGTDGAVGRARCLKTRESQFGSSSWTSPAACSSSKAGTSRHR
SIO_010081: AYX19_RS21775
subclass of: SO_0000673
so part of: AYX19_RS21775
location: 11519..12220
location: region:11519-12220:1
so has part: feature:11519-12220:1:exon

WP_242703294.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11519-12220:1:exon

AYX19_RS21780
type: Gene
subclass of: SO_0000704
RO_0002162: 37931
locus tag: AYX19_RS21780
old locus tag: AYX19_21685
pseudo: true
so part of: sequence
location: <12234..12611
location: region:12234-12611:1
so has part: feature:12234-12611:1:exon
subclass of: SO_0000010

79886466
type: Gene
SIO_000068: ncbigene

position:12234:1
position: 12234
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:12611:1
position: 12611
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12234-12611:1:exon

AYX19_RS21780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 37931
locus tag: AYX19_RS21780
old locus tag: AYX19_21685
inference: COORDINATES: protein motif:HMM:NF012514.2
GO function: GO:0016787 - hydrolase activity [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: NUDIX domain-containing protein
SIO_010081: AYX19_RS21780
subclass of: SO_0000673
so part of: AYX19_RS21780
location: <12234..12611
location: region:12234-12611:1
so has part: feature:12234-12611:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12234-12611:1:exon

AYX19_RS22210
type: Gene
subclass of: SO_0000704
RO_0002162: 37931
locus tag: AYX19_RS22210
so part of: sequence
location: complement(12617..13033)
location: region:12617-13033:-1
so has part: feature:12617-13033:-1:exon
subclass of: SO_0000010

79886536
type: Gene
SIO_000068: ncbigene

position:12617:-1
position: 12617
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13033:-1
position: 13033
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12617-13033:-1:exon

AYX19_RS22210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 37931
locus tag: AYX19_RS22210
inference: COORDINATES: protein motif:HMM:NF016144.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GrpB family protein
translation: MPGLAAKPILDIDVIVDGAEMSAAVAALGSAGYVHRGDLGVVDREAFHAPDANPRRNVYVCRAGTLNVRNHLAVRDVLRVREDLRDEYGAVKLALAGARHGHRYLHRSKVCGSPEGPRGVRPHLDECLQILRLNDPAA
SIO_010081: AYX19_RS22210
subclass of: SO_0000673
so part of: AYX19_RS22210
location: complement(12617..13033)
location: region:12617-13033:-1
so has part: feature:12617-13033:-1:exon

WP_242703299.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12617-13033:-1:exon

AYX19_RS22215
type: Gene
subclass of: SO_0000704
RO_0002162: 37931
locus tag: AYX19_RS22215
so part of: sequence
location: 13565..13909
location: region:13565-13909:1
so has part: feature:13565-13909:1:exon
subclass of: SO_0000010

79886537
type: Gene
SIO_000068: ncbigene

position:13565:1
position: 13565
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13909:1
position: 13909
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13565-13909:1:exon

AYX19_RS22215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 37931
locus tag: AYX19_RS22215
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDAGLGPSDEDVAAGRIYAGPPTSADAADISDREDLEPLFLDVWHRHVAPDLSLHRIRTLGGSLKELEAQLDEAVAMARAGGVSWEKIGRAFGISRQGAQKRWEGVSGDERTPV
SIO_010081: AYX19_RS22215
subclass of: SO_0000673
so part of: AYX19_RS22215
location: 13565..13909
location: region:13565-13909:1
so has part: feature:13565-13909:1:exon

WP_242703295.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13565-13909:1:exon

AYX19_RS21795
type: Gene
subclass of: SO_0000704
RO_0002162: 37931
locus tag: AYX19_RS21795
old locus tag: AYX19_21700
so part of: sequence
location: complement(13970..14218)
location: region:13970-14218:-1
so has part: feature:13970-14218:-1:exon
subclass of: SO_0000010

79886467
type: Gene
SIO_000068: ncbigene

position:13970:-1
position: 13970
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14218:-1
position: 14218
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13970-14218:-1:exon

AYX19_RS21795
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 37931
locus tag: AYX19_RS21795
old locus tag: AYX19_21700
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013603171.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MTAEHGKRRFLTIEQVAEELNFKSSLIRNLIHTGELRAFQVGARGLWRVGRQDLEDYIADAYRRTAERIAADELADDVPEGE
SIO_010081: AYX19_RS21795
subclass of: SO_0000673
so part of: AYX19_RS21795
location: complement(13970..14218)
location: region:13970-14218:-1
so has part: feature:13970-14218:-1:exon

WP_207606025.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13970-14218:-1:exon

AYX19_RS22220
type: Gene
subclass of: SO_0000704
RO_0002162: 37931
locus tag: AYX19_RS22220
so part of: sequence
location: complement(14396..14602)
location: region:14396-14602:-1
so has part: feature:14396-14602:-1:exon
subclass of: SO_0000010

79886538
type: Gene
SIO_000068: ncbigene

position:14396:-1
position: 14396
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14602:-1
position: 14602
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14396-14602:-1:exon

AYX19_RS22220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 37931
locus tag: AYX19_RS22220
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MERRLITDWTAARANERPEQLRDEAGAAYDSAERRQELAASLEGLLTVRLYKRGSIPIKTRPHRPAQP
SIO_010081: AYX19_RS22220
subclass of: SO_0000673
so part of: AYX19_RS22220
location: complement(14396..14602)
location: region:14396-14602:-1
so has part: feature:14396-14602:-1:exon

WP_242703296.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14396-14602:-1:exon

AYX19_RS21800
type: Gene
subclass of: SO_0000704
RO_0002162: 37931
locus tag: AYX19_RS21800
old locus tag: AYX19_21705
so part of: sequence
location: complement(14587..15249)
location: region:14587-15249:-1
so has part: feature:14587-15249:-1:exon
subclass of: SO_0000010

79886468
type: Gene
SIO_000068: ncbigene

position:14587:-1
position: 14587
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15249:-1
position: 15249
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14587-15249:-1:exon

AYX19_RS21800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 37931
locus tag: AYX19_RS21800
old locus tag: AYX19_21705
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013603109.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSESDGIDEALEGMSRVALTVAGRLGEQLARAREQELRRAQAAEEQQARELQARFDAERAAARAQLAPVMDNRWWDTATGRDIERAHEAATAWKDHDPAARDAAEVIRDHVQRRYGLDVDNLGANEATVAEALAKAERDREQAEQERRAGRDNNAQAVRLLAEADRKTGNARRLLIGPQRRTWTQRWPGSGRPNPSRRTTGNSGIILRIAWPWRTTWRGG
SIO_010081: AYX19_RS21800
subclass of: SO_0000673
so part of: AYX19_RS21800
location: complement(14587..15249)
location: region:14587-15249:-1
so has part: feature:14587-15249:-1:exon

WP_242703297.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14587-15249:-1:exon

AYX19_RS22225
type: Gene
subclass of: SO_0000704
RO_0002162: 37931
locus tag: AYX19_RS22225
so part of: sequence
location: complement(15267..16085)
location: region:15267-16085:-1
so has part: feature:15267-16085:-1:exon
subclass of: SO_0000010

79886539
type: Gene
SIO_000068: ncbigene

position:15267:-1
position: 15267
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16085:-1
position: 16085
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15267-16085:-1:exon

AYX19_RS22225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 37931
locus tag: AYX19_RS22225
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAERPPKGGRPVWFGGGHLAKDLALPKLRAEWPDSPQGAAEAVAEWQAAARGRRPVTIGREAHEPDPQMWEHYSDEVARLRETLRTVPLDDHATWAHVARETSGAFAAWSTATEATPGPLAAAADELSKTAQLRRYPVRPIRSAGPSARGASLMLMAASMGGTGTAAQAIMLRQLLNVAKAVHDMHKASNDLRKARQISHMVKHHLSQVAAALPSLPATAPTPDSEAAAAVRASTAGQVAGRSAGSVLPPKYVQARTHASTRSGSTRPDIER
SIO_010081: AYX19_RS22225
subclass of: SO_0000673
so part of: AYX19_RS22225
location: complement(15267..16085)
location: region:15267-16085:-1
so has part: feature:15267-16085:-1:exon

WP_242703298.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15267-16085:-1:exon

AYX19_RS22230
type: Gene
subclass of: SO_0000704
RO_0002162: 37931
locus tag: AYX19_RS22230
so part of: sequence
location: complement(16177..16647)
location: region:16177-16647:-1
so has part: feature:16177-16647:-1:exon
subclass of: SO_0000010

79886540
type: Gene
SIO_000068: ncbigene

position:16177:-1
position: 16177
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16647:-1
position: 16647
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16177-16647:-1:exon

AYX19_RS22230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 37931
locus tag: AYX19_RS22230
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: relaxase/mobilization nuclease domain-containing protein
translation: MDRARSVLGVEIPGGHVWHCSLSLRAEEGDLTDQKWADIAQDFMDEMGFTETSGRAPAQWVAIRHGHSKAGNDHIHIAASMVREDGTKWSSWRDFPGHNKPPGSLRKSTAWKNFRPRIPPAASGQENAKPPSGGEPRNRNAGPWNARSVPARRRPG
SIO_010081: AYX19_RS22230
subclass of: SO_0000673
so part of: AYX19_RS22230
location: complement(16177..16647)
location: region:16177-16647:-1
so has part: feature:16177-16647:-1:exon

WP_242703300.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16177-16647:-1:exon

AYX19_RS21810
type: Gene
subclass of: SO_0000704
RO_0002162: 37931
gene: mobC
locus tag: AYX19_RS21810
old locus tag: AYX19_21715
so part of: sequence
location: complement(16823..17128)
location: region:16823-17128:-1
so has part: feature:16823-17128:-1:exon
subclass of: SO_0000010

79886469
type: Gene
SIO_000068: ncbigene

position:16823:-1
position: 16823
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17128:-1
position: 17128
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16823-17128:-1:exon

AYX19_RS21810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 37931
gene: mobC
locus tag: AYX19_RS21810
old locus tag: AYX19_21715
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013603107.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid mobilization relaxosome protein MobC
translation: MSEFERAQLKVLEERTGRSPSEILVSAALYAENSESLAERRAMAVEFIAARRYLAALSNNVNQLARHANATDEFPEAARTVLTRVRAVADRINTMLDSMMR
SIO_010081: AYX19_RS21810
subclass of: SO_0000673
so part of: AYX19_RS21810
location: complement(16823..17128)
location: region:16823-17128:-1
so has part: feature:16823-17128:-1:exon

WP_207606076.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16823-17128:-1:exon

AYX19_RS21815
type: Gene
subclass of: SO_0000704
RO_0002162: 37931
locus tag: AYX19_RS21815
old locus tag: AYX19_21720
pseudo: true
so part of: sequence
location: 17907..18213
location: region:17907-18213:1
so has part: feature:17907-18213:1:exon
subclass of: SO_0000010

79886470
type: Gene
SIO_000068: ncbigene

position:17907:1
position: 17907
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18213:1
position: 18213
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17907-18213:1:exon

AYX19_RS21815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 37931
locus tag: AYX19_RS21815
old locus tag: AYX19_21720
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013603106.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: hypothetical protein
SIO_010081: AYX19_RS21815
subclass of: SO_0000673
so part of: AYX19_RS21815
location: 17907..18213
location: region:17907-18213:1
so has part: feature:17907-18213:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17907-18213:1:exon

AYX19_RS21820
type: Gene
subclass of: SO_0000704
RO_0002162: 37931
locus tag: AYX19_RS21820
old locus tag: AYX19_21725
pseudo: true
so part of: sequence
location: complement(18631..19981)
location: region:18631-19981:-1
so has part: feature:18631-19981:-1:exon
subclass of: SO_0000010

79886471
type: Gene
SIO_000068: ncbigene

position:18631:-1
position: 18631
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19981:-1
position: 19981
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18631-19981:-1:exon

AYX19_RS21820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 37931
locus tag: AYX19_RS21820
old locus tag: AYX19_21725
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011689752.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: ParB/RepB/Spo0J family partition protein
SIO_010081: AYX19_RS21820
subclass of: SO_0000673
so part of: AYX19_RS21820
location: complement(18631..19981)
location: region:18631-19981:-1
so has part: feature:18631-19981:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:18631-19981:-1:exon

AYX19_RS21825
type: Gene
subclass of: SO_0000704
RO_0002162: 37931
locus tag: AYX19_RS21825
old locus tag: AYX19_21735
so part of: sequence
location: 21233..21937
location: region:21233-21937:1
so has part: feature:21233-21937:1:exon
subclass of: SO_0000010

79886472
type: Gene
SIO_000068: ncbigene

position:21233:1
position: 21233
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21937:1
position: 21937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21233-21937:1:exon

AYX19_RS21825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 37931
locus tag: AYX19_RS21825
old locus tag: AYX19_21735
inference: COORDINATES: protein motif:HMM:NF012798.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
translation: MRSVSAKELRVRSVEPPRAPAWLSEEADRRALLALSLRPRDRFLVELLYFAGLRVGEALSLFREDLHLLADNRPHGCQVKGPHVHVVRNRSANGARAKSLRVVPLPAELALSYQEALRERIGWVGDDRGPNVFVALDGPTAGQALSYARVVDLFRQLSKLLGFKIRPHVLRHTRATIWLRGLECEPVDLDVVRVLLGHRSIASTLIYTHASEESLRAAVANPAVQFPQFSRAGA
SIO_010081: AYX19_RS21825
subclass of: SO_0000673
so part of: AYX19_RS21825
location: 21233..21937
location: region:21233-21937:1
so has part: feature:21233-21937:1:exon

WP_207606068.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21233-21937:1:exon

AYX19_RS21830
type: Gene
subclass of: SO_0000704
RO_0002162: 37931
locus tag: AYX19_RS21830
old locus tag: AYX19_21745
so part of: sequence
location: 22718..24154
location: region:22718-24154:1
so has part: feature:22718-24154:1:exon
subclass of: SO_0000010

79886473
type: Gene
SIO_000068: ncbigene

position:22718:1
position: 22718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24154:1
position: 24154
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22718-24154:1:exon

AYX19_RS21830
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 37931
locus tag: AYX19_RS21830
old locus tag: AYX19_21745
inference: COORDINATES: protein motif:HMM:NF012798.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
translation: MTSTPICWSVSARTSTPPRLKGVRSVGILVLEKGLRRFTGYESLQADLVYLQDLPLRVTNSHPNADLAGSPLDMTEISQPWLAAAFRAWLGSTLEPRPRVQRCFAACAEASAVLRAKRSDAGIEPTRLAYEDMAAISSRFDARWPIRASQSSHAVWWELCRTARRLGIWEQIPESFAQNYAGHKRAARRDRNDQRVENDRVTPAAVIGHLRNHTAQMTVGRHTKMYRCVLELLMETGRRPGEITSLGTDCLLQDRHGGWLLRYTAHKTGGAIKELPVEAPVVESIRRWEGVREELGIRSSFLFPTGRRRLKDENIPHVGETYLARILHKFAESLPPVPGPVLDPDGNTVDFDLASVQPYDFRRAYAQRHADNGTDPDVLRQLMDHVSMATTMGYYQVSSKRRRQAVSTSHLWPTTVTAARSGSVTASATENHPGPLRRLRRTKQRRAGGTACQLRYQCAGCGFFRPTPPTSRRSKRRS
SIO_010081: AYX19_RS21830
subclass of: SO_0000673
so part of: AYX19_RS21830
location: 22718..24154
location: region:22718-24154:1
so has part: feature:22718-24154:1:exon

WP_207606069.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22718-24154:1:exon

AYX19_RS21835
type: Gene
subclass of: SO_0000704
RO_0002162: 37931
locus tag: AYX19_RS21835
old locus tag: AYX19_21750
so part of: sequence
location: 24169..24384
location: region:24169-24384:1
so has part: feature:24169-24384:1:exon
subclass of: SO_0000010

79886474
type: Gene
SIO_000068: ncbigene

position:24169:1
position: 24169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24384:1
position: 24384
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24169-24384:1:exon

AYX19_RS21835
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 37931
locus tag: AYX19_RS21835
old locus tag: AYX19_21750
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRIAEASDTAAYLLDAQRGLITDYEKVLATMRARLAQLPPEQRQEIETMSEVMRRARSAALANKQIELREL
SIO_010081: AYX19_RS21835
subclass of: SO_0000673
so part of: AYX19_RS21835
location: 24169..24384
location: region:24169-24384:1
so has part: feature:24169-24384:1:exon

WP_207606070.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24169-24384:1:exon

AYX19_RS21840
type: Gene
subclass of: SO_0000704
RO_0002162: 37931
locus tag: AYX19_RS21840
so part of: sequence
location: 24381..24545
location: region:24381-24545:1
so has part: feature:24381-24545:1:exon
subclass of: SO_0000010

79886475
type: Gene
SIO_000068: ncbigene

position:24381:1
position: 24381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24545:1
position: 24545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24381-24545:1:exon

AYX19_RS21840
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 37931
locus tag: AYX19_RS21840
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTTGHTPAKGNAAALARARAQASARKHHDVVAALKTAADRGLSLTASTWPRPRA
SIO_010081: AYX19_RS21840
subclass of: SO_0000673
so part of: AYX19_RS21840
location: 24381..24545
location: region:24381-24545:1
so has part: feature:24381-24545:1:exon

WP_207606071.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24381-24545:1:exon