Paenarthrobacter ureafaciens strain DnL1-1 plasmid pADNL2.
Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Paenarthrobacter.
Atrazine-degrading Arthrobacter ureafaciens strain isolated from rhizosphere soil of maize plants with a history of atrazine application
Submitted (17-FEB-2016) Shandong Academy of Sciences, Biology Institute, No. 19 Keyuan Road, Lixia District, Jinan, Shandong 250014, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP014576.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT Portal v. v.2.3.0\nGenome Coverage :: 138.57x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 04:06:59\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,386\nCDSs (total) :: 4,312\nGenes (coding) :: 4,223\nCDSs (with protein) :: 4,223\nGenes (RNA) :: 74\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 53\nncRNAs :: 3\nPseudo Genes (total) :: 89\nCDSs (without protein) :: 89\nPseudo Genes (ambiguous residues) :: 0 of 89\nPseudo Genes (frameshifted) :: 47 of 89\nPseudo Genes (incomplete) :: 52 of 89\nPseudo Genes (internal stop) :: 7 of 89\nPseudo Genes (multiple problems) :: 15 of 89\n##Genome-Annotation-Data-END##
Soil cores containing the root system of one maize plant
China: Shandong, weifang Prefecture, dajiawa town, liulou village
Biology Institute of Shandong Academy of Sciences
COORDINATES: similar to AA sequence:RefSeq:WP_013602294.1
GO:0003987 - acetate-CoA ligase activity [Evidence IEA]
GO:0019427 - acetyl-CoA biosynthetic process from acetate [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016236504.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014921558.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013162088.1
GO:0004803 - transposase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017831726.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005203175.1
COORDINATES: similar to AA sequence:RefSeq:WP_009678361.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005075796.1
COORDINATES: protein motif:HMM:NF012514.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016144.2
COORDINATES: similar to AA sequence:RefSeq:WP_013603171.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013603109.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013603107.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_013603106.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689752.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]