Paenarthrobacter ureafaciens strain DnL1-1 plasmid pADNL1.
Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Paenarthrobacter.
Atrazine-degrading Arthrobacter ureafaciens strain isolated from rhizosphere soil of maize plants with a history of atrazine application
Submitted (17-FEB-2016) Shandong Academy of Sciences, Biology Institute, No. 19 Keyuan Road, Lixia District, Jinan, Shandong 250014, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP014575.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT Portal v. v.2.3.0\nGenome Coverage :: 138.57x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 04:06:59\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,386\nCDSs (total) :: 4,312\nGenes (coding) :: 4,223\nCDSs (with protein) :: 4,223\nGenes (RNA) :: 74\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 53\nncRNAs :: 3\nPseudo Genes (total) :: 89\nCDSs (without protein) :: 89\nPseudo Genes (ambiguous residues) :: 0 of 89\nPseudo Genes (frameshifted) :: 47 of 89\nPseudo Genes (incomplete) :: 52 of 89\nPseudo Genes (internal stop) :: 7 of 89\nPseudo Genes (multiple problems) :: 15 of 89\n##Genome-Annotation-Data-END##
Soil cores containing the root system of one maize plant
China: Shandong, weifang Prefecture, dajiawa town, liulou village
Biology Institute of Shandong Academy of Sciences
COORDINATES: similar to AA sequence:RefSeq:WP_008328818.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS91-like element ISPps1 family transposase
COORDINATES: protein motif:HMM:NF013056.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF012655.2
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011777000.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558120.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
Tn3-like element IS1071 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_013519057.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005588850.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004101201.1
GO:0008804 - carbamate kinase activity [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011117177.1
N-isopropylammelide isopropyl amidohydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_013347387.1
COORDINATES: similar to AA sequence:RefSeq:WP_005053787.1
COORDINATES: protein motif:HMM:NF024139.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009678360.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012371.2
serine hydrolase domain-containing protein
COORDINATES: protein motif:HMM:NF025343.2
TetR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF024742.2
COORDINATES: protein motif:HMM:NF013126.2
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
glycoside hydrolase family 3 N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF014026.2
glycoside hydrolase family 3 C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF025668.2
fibronectin type III-like domain-contianing protein
COORDINATES: protein motif:HMM:NF024989.2
COORDINATES: similar to AA sequence:RefSeq:WP_020608529.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018770809.1
GO:0004451 - isocitrate lyase activity [Evidence IEA]
GO:0019752 - carboxylic acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011773471.1
GO:0004474 - malate synthase activity [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003805722.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015535.2
COORDINATES: protein motif:HMM:NF012354.2
COORDINATES: protein motif:HMM:NF012312.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003982342.1
COORDINATES: similar to AA sequence:RefSeq:WP_015399594.1
GO:0009027 - tartrate dehydrogenase activity [Evidence IEA]
GO:0046395 - carboxylic acid catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012245541.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0019205 - nucleobase-containing compound kinase activity [Evidence IEA]
GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011777246.1
GO:0003987 - acetate-CoA ligase activity [Evidence IEA]
GO:0019427 - acetyl-CoA biosynthetic process from acetate [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011777247.1
COORDINATES: similar to AA sequence:RefSeq:WP_011777248.1
GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011777249.1
COORDINATES: similar to AA sequence:RefSeq:WP_018760549.1
COORDINATES: similar to AA sequence:RefSeq:WP_015937949.1
COORDINATES: similar to AA sequence:RefSeq:WP_007296130.1
COORDINATES: similar to AA sequence:RefSeq:WP_011777253.1
IclR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009358823.1
COORDINATES: similar to AA sequence:RefSeq:WP_013602773.1
COORDINATES: similar to AA sequence:RefSeq:WP_015746612.1
COORDINATES: similar to AA sequence:RefSeq:WP_020170467.1
FadR/GntR family transcriptional regulator
COORDINATES: protein motif:HMM:TIGR04255.1
COORDINATES: similar to AA sequence:RefSeq:WP_009358113.1
COORDINATES: similar to AA sequence:RefSeq:WP_013603052.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013603053.1
COORDINATES: similar to AA sequence:RefSeq:WP_009358110.1
COORDINATES: similar to AA sequence:RefSeq:WP_013603055.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689723.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689724.1
COORDINATES: similar to AA sequence:RefSeq:WP_013603057.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689726.1
COORDINATES: similar to AA sequence:RefSeq:WP_013603143.1
COORDINATES: similar to AA sequence:RefSeq:WP_013603059.1
COORDINATES: similar to AA sequence:RefSeq:WP_013603141.1
COORDINATES: similar to AA sequence:RefSeq:WP_011777323.1
COORDINATES: similar to AA sequence:RefSeq:WP_014923347.1
COORDINATES: similar to AA sequence:RefSeq:WP_018778388.1
COORDINATES: similar to AA sequence:RefSeq:WP_015936309.1
type I restriction endonuclease subunit R
COORDINATES: protein motif:HMM:NF013579.2
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018773322.1
class I SAM-dependent DNA methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_018773321.1
COORDINATES: similar to AA sequence:RefSeq:WP_018773320.1
COORDINATES: similar to AA sequence:RefSeq:WP_018762346.1
COORDINATES: similar to AA sequence:RefSeq:WP_013967284.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: protein motif:HMM:NF039405.1
COORDINATES: similar to AA sequence:RefSeq:WP_009747663.1
COORDINATES: similar to AA sequence:RefSeq:WP_018779714.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689746.1
COORDINATES: similar to AA sequence:RefSeq:WP_011690859.1
COORDINATES: similar to AA sequence:RefSeq:WP_013603121.1
COORDINATES: similar to AA sequence:RefSeq:WP_013603120.1
COORDINATES: similar to AA sequence:RefSeq:WP_012623490.1
COORDINATES: similar to AA sequence:RefSeq:WP_017200552.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689751.1
COORDINATES: similar to AA sequence:RefSeq:WP_013603097.1
COORDINATES: similar to AA sequence:RefSeq:WP_013603184.1
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011689752.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_013603106.1
COORDINATES: similar to AA sequence:RefSeq:WP_013603174.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_013603108.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013603172.1
COORDINATES: similar to AA sequence:RefSeq:WP_013603171.1
COORDINATES: similar to AA sequence:RefSeq:WP_013603170.1
COORDINATES: similar to AA sequence:RefSeq:WP_008363813.1
COORDINATES: protein motif:HMM:NF012514.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013424078.1
COORDINATES: similar to AA sequence:RefSeq:WP_005943416.1
COORDINATES: similar to AA sequence:RefSeq:WP_009678361.1
COORDINATES: similar to AA sequence:RefSeq:WP_005203175.1
COORDINATES: protein motif:HMM:NF012335.2
COORDINATES: similar to AA sequence:RefSeq:WP_016694245.1
COORDINATES: protein motif:HMM:NF013927.2
COORDINATES: similar to AA sequence:RefSeq:WP_020139243.1
GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
frameshifted; incomplete; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
isocitrate/isopropylmalate family dehydrogenase