Glutamicibacter protophormiae strain R912 plasmid pR912B, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Glutamicibacter.
Submitted (10-FEB-2021) College of Biomedical Sciences, Shandong First Medical University, 6699 Qingdao Road, Jinan 250117, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP069808.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. V0.4.7\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 645.0x\nSequencing Technology :: Oxford Nanopore GridION; BGISEQ\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/12/2023 06:14:14\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,686\nCDSs (total) :: 3,598\nGenes (coding) :: 3,554\nCDSs (with protein) :: 3,554\nGenes (RNA) :: 88\nrRNAs :: 7, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 6, 6 (5S, 16S, 23S)\ntRNAs :: 66\nncRNAs :: 3\nPseudo Genes (total) :: 44\nCDSs (without protein) :: 44\nPseudo Genes (ambiguous residues) :: 0 of 44\nPseudo Genes (frameshifted) :: 21 of 44\nPseudo Genes (incomplete) :: 22 of 44\nPseudo Genes (internal stop) :: 13 of 44\nPseudo Genes (multiple problems) :: 10 of 44\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_013348059.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005053885.1
TraM recognition domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013347385.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013347386.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347387.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347388.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347389.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_013347392.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013347393.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347394.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347395.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347396.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347397.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347398.1
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013347399.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347400.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347401.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347402.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347358.1
COORDINATES: similar to AA sequence:RefSeq:WP_015011451.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347359.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347360.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347361.1
COORDINATES: similar to AA sequence:RefSeq:WP_017835251.1
COORDINATES: similar to AA sequence:RefSeq:WP_005053852.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019311173.1
COORDINATES: similar to AA sequence:RefSeq:WP_018024231.1
COORDINATES: similar to AA sequence:RefSeq:WP_013348050.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347377.1
COORDINATES: similar to AA sequence:RefSeq:WP_011544710.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003799570.1
ABC-F family ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005266734.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_086558309.1
IS481-like element IS5564 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_010890215.1
GO:0055085 - transmembrane transport [Evidence IEA]
chloramphenicol efflux MFS transporter Cmx
COORDINATES: protein motif:HMM:NF014669.2
COORDINATES: similar to AA sequence:RefSeq:WP_011691958.1
COORDINATES: similar to AA sequence:RefSeq:WP_018772968.1
energy-coupling factor transporter transmembrane component T
COORDINATES: protein motif:HMM:NF022636.2
COORDINATES: similar to AA sequence:RefSeq:WP_013348052.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347379.1
MobC family plasmid mobilization relaxosome protein
COORDINATES: similar to AA sequence:RefSeq:WP_013347380.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013347381.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347382.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558200.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011152925.1
COORDINATES: similar to AA sequence:RefSeq:WP_005326075.1