Glutamicibacter protophormiae strain R912 plasmid pR912A, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Glutamicibacter.
Submitted (10-FEB-2021) College of Biomedical Sciences, Shandong First Medical University, 6699 Qingdao Road, Jinan 250117, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP069807.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. V0.4.7\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 645.0x\nSequencing Technology :: Oxford Nanopore GridION; BGISEQ\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/12/2023 06:14:14\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,686\nCDSs (total) :: 3,598\nGenes (coding) :: 3,554\nCDSs (with protein) :: 3,554\nGenes (RNA) :: 88\nrRNAs :: 7, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 6, 6 (5S, 16S, 23S)\ntRNAs :: 66\nncRNAs :: 3\nPseudo Genes (total) :: 44\nCDSs (without protein) :: 44\nPseudo Genes (ambiguous residues) :: 0 of 44\nPseudo Genes (frameshifted) :: 21 of 44\nPseudo Genes (incomplete) :: 22 of 44\nPseudo Genes (internal stop) :: 13 of 44\nPseudo Genes (multiple problems) :: 10 of 44\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
type I restriction enzyme HsdR N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005053865.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF018154.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017524.2
plasmid mobilization relaxosome protein MobC
COORDINATES: protein motif:HMM:NF015397.2
relaxase/mobilization nuclease domain-containing protein
COORDINATES: protein motif:HMM:NF027584.2
COORDINATES: similar to AA sequence:RefSeq:WP_013350309.1
TraM recognition domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013350310.1
COORDINATES: similar to AA sequence:RefSeq:WP_013350311.1
COORDINATES: similar to AA sequence:RefSeq:WP_013350314.1
COORDINATES: similar to AA sequence:RefSeq:WP_013350316.1
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF013618.2
transglycosylase SLT domain-containing protein
COORDINATES: protein motif:HMM:NF015422.2
helicase associated domain-containing protein
COORDINATES: protein motif:HMM:NF024139.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611191.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001389365.1
IS6-like element IS6100 family transposase
COORDINATES: similar to AA sequence:RefSeq:YP_005221021.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007929940.1
sulfonamide-resistant dihydropteroate synthase Sul1
COORDINATES: similar to AA sequence:RefSeq:WP_004194535.1
COORDINATES: similar to AA sequence:RefSeq:WP_013115599.1
COORDINATES: protein motif:HMM:NF017885.2
COORDINATES: protein motif:HMM:NF019371.2
COORDINATES: protein motif:HMM:NF025027.2
COORDINATES: similar to AA sequence:RefSeq:WP_013350336.1
COORDINATES: protein motif:HMM:NF018691.2
COORDINATES: similar to AA sequence:RefSeq:WP_013350341.1
GO:0097573 - glutathione oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007298571.1
IS481-like element IS5564 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_010890215.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
chloramphenicol efflux MFS transporter Cmx
COORDINATES: similar to AA sequence:RefSeq:WP_010991840.1
tetracycline efflux MFS transporter Tet(33)
COORDINATES: similar to AA sequence:RefSeq:WP_010154754.1
GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
TetR/AcrR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019482532.1
COORDINATES: protein motif:HMM:NF037530.2
COORDINATES: similar to AA sequence:RefSeq:WP_007926546.1
ABC-F family ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015071355.1
COORDINATES: similar to AA sequence:RefSeq:WP_012803697.1
COORDINATES: similar to AA sequence:RefSeq:WP_005943416.1
COORDINATES: similar to AA sequence:RefSeq:WP_009678361.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008376360.1
COORDINATES: similar to AA sequence:RefSeq:WP_000259031.1
COORDINATES: similar to AA sequence:RefSeq:WP_000679427.1
quaternary ammonium compound efflux SMR transporter QacE delta 1
COORDINATES: similar to AA sequence:RefSeq:WP_001355915.1
trimethoprim-resistant dihydrofolate reductase DfrA1
COORDINATES: similar to AA sequence:RefSeq:WP_001749984.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
AadA family aminoglycoside 3''-O-nucleotidyltransferase