Glutamicibacter nicotianae strain OTC-16 plasmid unnamed1, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Glutamicibacter.
Complete genome sequence of Oxytetracycline degradation strain Arthrobacter nicotianae OTC-16
Submitted (15-OCT-2018) School of Forestry & Bio-technology, Zhejiang A & F University, Wu Su Street 666, Ling'an, Hangzhou, Zhejiang 311300, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP033082.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: FALCON v. v0.3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 380.0x\nSequencing Technology :: PacBio RSII; Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/23/2023 04:04:57\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,582\nCDSs (total) :: 3,493\nGenes (coding) :: 3,445\nCDSs (with protein) :: 3,445\nGenes (RNA) :: 89\nrRNAs :: 7, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 6, 6 (5S, 16S, 23S)\ntRNAs :: 67\nncRNAs :: 3\nPseudo Genes (total) :: 48\nCDSs (without protein) :: 48\nPseudo Genes (ambiguous residues) :: 0 of 48\nPseudo Genes (frameshifted) :: 17 of 48\nPseudo Genes (incomplete) :: 32 of 48\nPseudo Genes (internal stop) :: 4 of 48\nPseudo Genes (multiple problems) :: 4 of 48\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
active sludge around pharmaceutical factory
COORDINATES: similar to AA sequence:RefSeq:WP_010991840.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
tetracycline efflux MFS transporter Tet(33)
COORDINATES: protein motif:HMM:NF012655.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014906.2
GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
TetR/AcrR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF020332.2
COORDINATES: similar to AA sequence:RefSeq:WP_001389365.1
GO:0004803 - transposase activity [Evidence IEA]
IS6-like element IS6100 family transposase
COORDINATES: similar to AA sequence:RefSeq:YP_005229646.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004194535.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000259031.1
sulfonamide-resistant dihydropteroate synthase Sul1
COORDINATES: similar to AA sequence:RefSeq:WP_000679427.1
QacE family quaternary ammonium compound efflux SMR transporter
COORDINATES: similar to AA sequence:RefSeq:WP_001749984.1
AadA family aminoglycoside 3''-O-nucleotidyltransferase
COORDINATES: similar to AA sequence:RefSeq:YP_005221021.1
COORDINATES: similar to AA sequence:RefSeq:WP_010154754.1
COORDINATES: protein motif:HMM:NF041492.1
quaternary ammonium compound efflux SMR transporter QacE delta 1
COORDINATES: similar to AA sequence:RefSeq:WP_076611758.1
GO:0015074 - DNA integration [Evidence IEA]
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013160158.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017615638.1
aromatic acid/H+ symport family MFS transporter
COORDINATES: similar to AA sequence:RefSeq:WP_013602955.1
PaaX family transcriptional regulator C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017615641.1
COORDINATES: similar to AA sequence:RefSeq:WP_017615642.1
COORDINATES: similar to AA sequence:RefSeq:WP_013602952.1
COORDINATES: similar to AA sequence:RefSeq:WP_017833814.1
COORDINATES: similar to AA sequence:RefSeq:WP_018772171.1
GO:0003824 - catalytic activity [Evidence IEA]
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013602949.1
maleylpyruvate isomerase family mycothiol-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_076612289.1
COORDINATES: protein motif:HMM:NF014584.2
COORDINATES: similar to AA sequence:RefSeq:WP_013348134.1
GO:0042132 - fructose 1,6-bisphosphate 1-phosphatase activity [Evidence IEA]
GO:0006094 - gluconeogenesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019813365.1
GO:0015385 - sodium:proton antiporter activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_005307350.1
GO:0004540 - ribonuclease activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012791.2
GO:0032559 - adenyl ribonucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019483347.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019160178.1
GO:0015103 - inorganic anion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020102340.1
GO:0003924 - GTPase activity [Evidence IEA]
GO:0006415 - translational termination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017832581.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
MerR family DNA-binding transcriptional regulator
COORDINATES: protein motif:HMM:NF013884.2
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016664134.1
COORDINATES: similar to AA sequence:RefSeq:WP_007272369.1
COORDINATES: similar to AA sequence:RefSeq:WP_007928758.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF024776.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011689561.1
COORDINATES: protein motif:HMM:NF023505.2
COORDINATES: similar to AA sequence:RefSeq:WP_011692006.1
COORDINATES: similar to AA sequence:RefSeq:WP_007212286.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347494.1
COORDINATES: protein motif:HMM:NF024950.2
GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF017469.2
COORDINATES: protein motif:HMM:NF028169.2
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: protein motif:HMM:NF024880.2
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF025448.2
COORDINATES: protein motif:HMM:NF012675.2
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012086635.1
COORDINATES: protein motif:HMM:NF013630.2
LysM peptidoglycan-binding domain-containing protein
COORDINATES: protein motif:HMM:NF019428.2
TadE/TadG family type IV pilus assembly protein
COORDINATES: protein motif:HMM:NF012694.2
type II secretion system F family protein
COORDINATES: protein motif:HMM:NF012652.2
COORDINATES: protein motif:HMM:NF020250.2
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_018762623.1
COORDINATES: protein motif:HMM:NF016670.2
COORDINATES: protein motif:HMM:NF024056.2
COORDINATES: protein motif:HMM:NF024254.2
COORDINATES: protein motif:HMM:NF013700.2
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012234.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010890215.1
chloramphenicol efflux MFS transporter Cmx
COORDINATES: similar to AA sequence:RefSeq:WP_007298571.1
IS481-like element IS5564 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_005050756.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020608514.1
COORDINATES: similar to AA sequence:RefSeq:WP_018133692.1
translesion error-prone DNA polymerase V autoproteolytic subunit