Arthrobacter crystallopoietes strain DSM 20117 plasmid pLDW-10, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Arthrobacter.
The whole genome sequencing and assembly of Arthrobacter crystallopoietes DSM 20117T strain
Submitted (19-DEC-2016) Kyungpook National University, School of Applied Biosciences, 80 Daehak-Ro, Bukgu, Daegu 41566, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP018865.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT analysis 2.3 v. HGAP protocol 2\nGenome Coverage :: 100.86\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 07:52:51\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,661\nCDSs (total) :: 4,582\nGenes (coding) :: 4,528\nCDSs (with protein) :: 4,528\nGenes (RNA) :: 79\nrRNAs :: 9, 9, 9 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 9, 9 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 4\nPseudo Genes (total) :: 54\nCDSs (without protein) :: 54\nPseudo Genes (ambiguous residues) :: 0 of 54\nPseudo Genes (frameshifted) :: 23 of 54\nPseudo Genes (incomplete) :: 31 of 54\nPseudo Genes (internal stop) :: 8 of 54\nPseudo Genes (multiple problems) :: 8 of 54\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Arthrobacter crystallopoietes
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF024770.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003802873.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
LacI family DNA-binding transcriptional regulator
COORDINATES: protein motif:HMM:NF024212.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013601264.1
COORDINATES: similar to AA sequence:RefSeq:WP_003800950.1
COORDINATES: similar to AA sequence:RefSeq:WP_003800952.1
TMAO reductase system periplasmic protein TorT
COORDINATES: similar to AA sequence:RefSeq:WP_003800954.1
COORDINATES: similar to AA sequence:RefSeq:WP_003800956.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003800958.1
COORDINATES: similar to AA sequence:RefSeq:WP_003800960.1
COORDINATES: similar to AA sequence:RefSeq:WP_011777035.1
ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF013584.2
COORDINATES: similar to AA sequence:RefSeq:WP_011777033.1
IclR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011777032.1
aromatic ring-hydroxylating dioxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_011777031.1
GO:0006725 - cellular aromatic compound metabolic process [Evidence IEA]
aromatic-ring-hydroxylating dioxygenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_011777030.1
4-hydroxythreonine-4-phosphate dehydrogenase PdxA
COORDINATES: similar to AA sequence:RefSeq:WP_011777029.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_005270263.1
COORDINATES: similar to AA sequence:RefSeq:WP_011777027.1
COORDINATES: similar to AA sequence:RefSeq:WP_011777026.1
COORDINATES: protein motif:HMM:NF013753.2
COORDINATES: protein motif:HMM:NF024932.2
COORDINATES: similar to AA sequence:RefSeq:WP_076612118.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012993.2
carbon-nitrogen hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005275174.1
COORDINATES: similar to AA sequence:RefSeq:WP_015936055.1
COORDINATES: similar to AA sequence:RefSeq:WP_003986376.1
COORDINATES: similar to AA sequence:RefSeq:WP_013600171.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013600172.1
aspartate/glutamate racemase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013600173.1
COORDINATES: similar to AA sequence:RefSeq:WP_011777042.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00059
TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_011777043.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
GO:0009228 - thiamine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011777044.1
COORDINATES: similar to AA sequence:RefSeq:WP_011777045.1
COORDINATES: similar to AA sequence:RefSeq:WP_003799153.1
COORDINATES: similar to AA sequence:RefSeq:WP_011777047.1
COORDINATES: similar to AA sequence:RefSeq:WP_011777048.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024252.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF017885.2
COORDINATES: similar to AA sequence:RefSeq:WP_018955562.1
COORDINATES: similar to AA sequence:RefSeq:WP_019482550.1
cytochrome c biogenesis CcdA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019482549.1
COORDINATES: similar to AA sequence:RefSeq:WP_019482554.1
COORDINATES: similar to AA sequence:RefSeq:WP_005272597.1
COORDINATES: similar to AA sequence:RefSeq:WP_005268859.1
COORDINATES: similar to AA sequence:RefSeq:WP_017593889.1
COORDINATES: similar to AA sequence:RefSeq:WP_019484296.1
metal-sensitive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019482225.1
rhodanese-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003848340.1
COORDINATES: similar to AA sequence:RefSeq:WP_017833463.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013285931.1
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017831888.1
COORDINATES: similar to AA sequence:RefSeq:WP_017831889.1
COORDINATES: similar to AA sequence:RefSeq:WP_009356608.1
GO:0015385 - sodium:proton antiporter activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006770312.1
GO:0098662 - inorganic cation transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007299916.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019481314.1
COORDINATES: similar to AA sequence:RefSeq:WP_013602560.1
sodium-dependent bicarbonate transport family permease
COORDINATES: similar to AA sequence:RefSeq:WP_004248595.1
COORDINATES: similar to AA sequence:RefSeq:WP_019483729.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_086558126.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF036700.2
COORDINATES: similar to AA sequence:RefSeq:WP_014924635.1
COORDINATES: similar to AA sequence:RefSeq:WP_012623540.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689805.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689806.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689807.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689808.1
COORDINATES: similar to AA sequence:RefSeq:WP_011777321.1
COORDINATES: similar to AA sequence:RefSeq:WP_005266404.1
COORDINATES: similar to AA sequence:RefSeq:WP_005266405.1
COORDINATES: similar to AA sequence:RefSeq:WP_005266406.1
COORDINATES: similar to AA sequence:RefSeq:WP_017607246.1
COORDINATES: similar to AA sequence:RefSeq:WP_018779748.1
COORDINATES: similar to AA sequence:RefSeq:WP_018779749.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689678.1
COORDINATES: similar to AA sequence:RefSeq:WP_018762606.1
COORDINATES: similar to AA sequence:RefSeq:WP_018762605.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012623555.1
COORDINATES: similar to AA sequence:RefSeq:WP_020133007.1
COORDINATES: similar to AA sequence:RefSeq:WP_017983565.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_017983564.1
COORDINATES: similar to AA sequence:RefSeq:WP_018000544.1
COORDINATES: similar to AA sequence:RefSeq:WP_017983562.1
GO:0016787 - hydrolase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017983561.1
COORDINATES: similar to AA sequence:RefSeq:WP_013674316.1
COORDINATES: similar to AA sequence:RefSeq:WP_013674317.1
COORDINATES: similar to AA sequence:RefSeq:WP_017983559.1
COORDINATES: protein motif:HMM:NF014081.2
COORDINATES: similar to AA sequence:RefSeq:WP_017983557.1
GO:0016853 - isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020661400.1
GO:0004514 - nicotinate-nucleotide diphosphorylase (carboxylating) activity [Evidence IEA]
GO:0009435 - NAD biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017983568.1
COORDINATES: similar to AA sequence:RefSeq:WP_019929677.1
isocitrate lyase/PEP mutase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009742299.1
GO:0009316 - 3-isopropylmalate dehydratase complex [Evidence IEA]
GO:0003861 - 3-isopropylmalate dehydratase activity [Evidence IEA]
GO:0009098 - leucine biosynthetic process [Evidence IEA]
3-isopropylmalate dehydratase small subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011196241.1
3-isopropylmalate dehydratase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_003323879.1
GO:0003862 - 3-isopropylmalate dehydrogenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: similar to AA sequence:RefSeq:WP_013020807.1
COORDINATES: protein motif:HMM:NF024772.2
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: similar to AA sequence:RefSeq:WP_009479893.1
COORDINATES: similar to AA sequence:RefSeq:WP_006552201.1
COORDINATES: similar to AA sequence:RefSeq:WP_005560157.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013757.2
COORDINATES: similar to AA sequence:RefSeq:WP_019521455.1
COORDINATES: similar to AA sequence:RefSeq:WP_013603005.1
COORDINATES: similar to AA sequence:RefSeq:WP_016884999.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689777.1
COORDINATES: similar to AA sequence:RefSeq:WP_013603159.1
COORDINATES: similar to AA sequence:RefSeq:WP_013603009.1
COORDINATES: similar to AA sequence:RefSeq:WP_013603010.1
COORDINATES: similar to AA sequence:RefSeq:WP_006897059.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689783.1
COORDINATES: similar to AA sequence:RefSeq:WP_006897057.1
3-phenylpropionate/cinnamic acid dioxygenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_013603013.1
COORDINATES: similar to AA sequence:RefSeq:WP_005444922.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689787.1
COORDINATES: similar to AA sequence:RefSeq:WP_005444924.1
class II aldolase/adducin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011689789.1
COORDINATES: similar to AA sequence:RefSeq:WP_010850172.1
COORDINATES: similar to AA sequence:RefSeq:WP_013603167.1
COORDINATES: similar to AA sequence:RefSeq:WP_007323087.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012623607.1
PDDEXK nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012623609.1
COORDINATES: similar to AA sequence:RefSeq:WP_018762484.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013348053.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_013603175.1
COORDINATES: similar to AA sequence:RefSeq:WP_018762481.1
COORDINATES: protein motif:HMM:NF025200.2
COORDINATES: similar to AA sequence:RefSeq:WP_018772496.1
COORDINATES: similar to AA sequence:RefSeq:WP_011776917.1
COORDINATES: similar to AA sequence:RefSeq:WP_010143882.1
FAD-dependent tricarballylate dehydrogenase TcuA
COORDINATES: similar to AA sequence:RefSeq:WP_014921282.1
molybdenum cofactor biosynthesis protein MoaE
COORDINATES: similar to AA sequence:RefSeq:WP_003798797.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]
GO:0006777 - Mo-molybdopterin cofactor biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014636.2
COORDINATES: similar to AA sequence:RefSeq:WP_015938351.1
COORDINATES: similar to AA sequence:RefSeq:WP_018772056.1
COORDINATES: protein motif:HMM:TIGR00369.1
COORDINATES: similar to AA sequence:RefSeq:WP_017883796.1
COORDINATES: protein motif:HMM:NF013134.2
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014758.2
xanthine dehydrogenase family protein molybdopterin-binding subunit
COORDINATES: protein motif:HMM:NF013923.2
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013672.2
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
polysaccharide deacetylase family protein
COORDINATES: protein motif:HMM:NF012913.2
COORDINATES: protein motif:HMM:NF017999.2
COORDINATES: protein motif:HMM:NF012711.2
class I adenylate-forming enzyme family protein
COORDINATES: protein motif:HMM:NF024989.2
NADPH:quinone oxidoreductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012853304.1
COORDINATES: similar to AA sequence:RefSeq:WP_003889993.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611786.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017988194.1
COORDINATES: protein motif:HMM:TIGR02118.1
COORDINATES: similar to AA sequence:RefSeq:WP_006438775.1
COORDINATES: protein motif:HMM:NF013756.2
COORDINATES: similar to AA sequence:RefSeq:WP_004739424.1
carboxymuconolactone decarboxylase family protein
COORDINATES: protein motif:HMM:NF012517.2
COORDINATES: protein motif:HMM:NF019520.2
COORDINATES: protein motif:HMM:NF014126.2
COORDINATES: similar to AA sequence:RefSeq:WP_004571486.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016487103.1
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: protein motif:HMM:NF014218.2
COORDINATES: protein motif:HMM:NF018745.2
COORDINATES: similar to AA sequence:RefSeq:WP_007272305.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611781.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024606.2
TerB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020377942.1
COORDINATES: protein motif:HMM:NF016724.2
GO:0004527 - exonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017199794.1
COORDINATES: protein motif:HMM:NF019581.2
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: protein motif:HMM:NF014684.2