Arthrobacter agilis strain TMP24 plasmid pAAG24-80, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Arthrobacter.
Comprehensive characterization of bacterial community isolated from the temporary meltwater ponds of the coastal area of East Antarctica
Submitted (10-FEB-2023) Center of analytical and genetic engineering research, Institute of Microbiology, National Academy of Sciences of Belarus, Kuprevich 2, Minsk 220084, Belarus
REFSEQ INFORMATION: The reference sequence is identical to\nCP117872.1.\nBacteria and source DNA available from Belarusian collection of\nnon-pathogenic microorganisms.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 31-JAN-2023\nAssembly Method :: Barapost v. 2022-08-02_edition; Flye v.\n 2.9.1-b1780; SPAdes v. 3.15.4\nAssembly Name :: Aag24_v1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 240.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/19/2023 16:09:23\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,569\nCDSs (total) :: 3,511\nGenes (coding) :: 3,481\nCDSs (with protein) :: 3,481\nGenes (RNA) :: 58\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 3\nPseudo Genes (total) :: 30\nCDSs (without protein) :: 30\nPseudo Genes (ambiguous residues) :: 0 of 30\nPseudo Genes (frameshifted) :: 8 of 30\nPseudo Genes (incomplete) :: 22 of 30\nPseudo Genes (internal stop) :: 7 of 30\nPseudo Genes (multiple problems) :: 6 of 30\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Middle part of the water column of temporary meltwater pond
COORDINATES: protein motif:HMM:TIGR01764.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_017832689.1
transglycosylase SLT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017832690.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689870.1
COORDINATES: similar to AA sequence:RefSeq:WP_013603139.1
COORDINATES: similar to AA sequence:RefSeq:WP_013603063.1
COORDINATES: similar to AA sequence:RefSeq:WP_017936035.1
COORDINATES: protein motif:HMM:NF015422.2
helicase associated domain-containing protein
COORDINATES: protein motif:HMM:NF025160.2
COORDINATES: similar to AA sequence:RefSeq:WP_009154776.1
COORDINATES: protein motif:HMM:NF012321.2
COORDINATES: similar to AA sequence:RefSeq:WP_010228578.1
COORDINATES: similar to AA sequence:RefSeq:WP_015439320.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017726473.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_020385047.1
COORDINATES: similar to AA sequence:RefSeq:WP_011691761.1
COORDINATES: similar to AA sequence:RefSeq:WP_018770468.1
COORDINATES: similar to AA sequence:RefSeq:WP_018777922.1
COORDINATES: protein motif:HMM:NF015925.2
COORDINATES: similar to AA sequence:RefSeq:WP_013599751.1
sugar phosphate isomerase/epimerase family protein
COORDINATES: protein motif:HMM:NF027584.2
COORDINATES: similar to AA sequence:RefSeq:WP_020077448.1
COORDINATES: similar to AA sequence:RefSeq:WP_015882601.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611735.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012870.2
GO:0015074 - DNA integration [Evidence IEA]
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_013160159.1
COORDINATES: protein motif:HMM:NF024673.2
COORDINATES: protein motif:HMM:NF013677.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017235363.1
COORDINATES: similar to AA sequence:RefSeq:WP_007679356.1
isocitrate lyase/PEP mutase family protein
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: protein motif:HMM:NF012607.2
COORDINATES: similar to AA sequence:RefSeq:WP_018761819.1
COORDINATES: similar to AA sequence:RefSeq:WP_014675898.1
fumarylacetoacetate hydrolase family protein
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011693862.1
COORDINATES: similar to AA sequence:RefSeq:WP_015490002.1
COORDINATES: similar to AA sequence:RefSeq:WP_015938981.1
COORDINATES: protein motif:HMM:NF013180.2
COORDINATES: similar to AA sequence:RefSeq:WP_005171021.1
COORDINATES: similar to AA sequence:RefSeq:WP_012650008.1
COORDINATES: similar to AA sequence:RefSeq:WP_006590976.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012623613.1
COORDINATES: similar to AA sequence:RefSeq:WP_017834365.1
plasmid mobilization relaxosome protein MobC
COORDINATES: protein motif:HMM:NF017885.2
COORDINATES: protein motif:HMM:NF018154.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005180243.1
COORDINATES: protein motif:HMM:NF020387.2
COORDINATES: similar to AA sequence:RefSeq:WP_013602871.1
pyridoxal phosphate-dependent aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_005249322.1
COORDINATES: similar to AA sequence:RefSeq:WP_017582150.1
PLP-dependent aminotransferase family protein
COORDINATES: protein motif:HMM:NF013232.2
COORDINATES: similar to AA sequence:RefSeq:WP_019608013.1
COORDINATES: protein motif:HMM:NF012383.2
GO:0009116 - nucleoside metabolic process [Evidence IEA]
phosphoribosyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018189625.1
COORDINATES: similar to AA sequence:RefSeq:WP_041767552.1
COORDINATES: similar to AA sequence:RefSeq:WP_011691635.1
COORDINATES: similar to AA sequence:RefSeq:WP_015936252.1
COORDINATES: similar to AA sequence:RefSeq:WP_006137528.1
COORDINATES: similar to AA sequence:RefSeq:WP_003443949.1
GO:0046417 - chorismate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013603147.1
TraM recognition domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017572475.1
COORDINATES: similar to AA sequence:RefSeq:WP_017832681.1
COORDINATES: similar to AA sequence:RefSeq:WP_017832683.1
COORDINATES: similar to AA sequence:RefSeq:WP_017832684.1