Arthrobacter agilis strain TMP24 plasmid pAAG24-85, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Arthrobacter.
Comprehensive characterization of bacterial community isolated from the temporary meltwater ponds of the coastal area of East Antarctica
Submitted (10-FEB-2023) Center of analytical and genetic engineering research, Institute of Microbiology, National Academy of Sciences of Belarus, Kuprevich 2, Minsk 220084, Belarus
REFSEQ INFORMATION: The reference sequence is identical to\nCP117871.1.\nBacteria and source DNA available from Belarusian collection of\nnon-pathogenic microorganisms.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 31-JAN-2023\nAssembly Method :: Barapost v. 2022-08-02_edition; Flye v.\n 2.9.1-b1780; SPAdes v. 3.15.4\nAssembly Name :: Aag24_v1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 240.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/19/2023 16:09:23\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,569\nCDSs (total) :: 3,511\nGenes (coding) :: 3,481\nCDSs (with protein) :: 3,481\nGenes (RNA) :: 58\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 3\nPseudo Genes (total) :: 30\nCDSs (without protein) :: 30\nPseudo Genes (ambiguous residues) :: 0 of 30\nPseudo Genes (frameshifted) :: 8 of 30\nPseudo Genes (incomplete) :: 22 of 30\nPseudo Genes (internal stop) :: 7 of 30\nPseudo Genes (multiple problems) :: 6 of 30\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Middle part of the water column of temporary meltwater pond
COORDINATES: protein motif:HMM:TIGR01764.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_017832689.1
transglycosylase SLT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019481165.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689803.1
COORDINATES: similar to AA sequence:RefSeq:WP_011776917.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF040384.1
COORDINATES: similar to AA sequence:RefSeq:WP_016456418.1
COORDINATES: protein motif:HMM:NF036700.2
COORDINATES: similar to AA sequence:RefSeq:WP_013603101.1
COORDINATES: protein motif:HMM:NF025200.2
COORDINATES: similar to AA sequence:RefSeq:WP_017832719.1
COORDINATES: protein motif:HMM:NF018339.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0009036 - type II site-specific deoxyribonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
BsuBI/PstI family type II restriction endonuclease
COORDINATES: protein motif:HMM:NF019291.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO:0006304 - DNA modification [Evidence IEA]
Eco57I restriction-modification methylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011689638.1
COORDINATES: similar to AA sequence:RefSeq:WP_015650353.1
COORDINATES: similar to AA sequence:RefSeq:WP_017831869.1
GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]; GO:0043682 - P-type divalent copper transporter activity [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF012621.2
heavy metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013492926.1
four-helix bundle copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006214320.1
metal-sensitive transcriptional regulator
COORDINATES: nucleotide motif:Rfam:14.4:RF00379
cyclic di-AMP (ydaO/yuaA leader) riboswitch senses the signaling molecule cyclic di-AMP; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_019483229.1
LysM peptidoglycan-binding domain-containing protein
COORDINATES: protein motif:HMM:NF039693.1
COORDINATES: similar to AA sequence:RefSeq:WP_009749688.1
COORDINATES: similar to AA sequence:RefSeq:WP_015309840.1
COORDINATES: similar to AA sequence:RefSeq:WP_015489380.1
COORDINATES: similar to AA sequence:RefSeq:WP_019481149.1
COORDINATES: similar to AA sequence:RefSeq:WP_012630948.1
COORDINATES: similar to AA sequence:RefSeq:WP_009408064.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017829656.1
COORDINATES: similar to AA sequence:RefSeq:WP_010080128.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017488284.1
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: protein motif:HMM:NF012464.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005268665.1
COORDINATES: similar to AA sequence:RefSeq:WP_011776991.1
vitamin K epoxide reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014923400.1
GO:0017004 - cytochrome complex assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002856942.1
COORDINATES: similar to AA sequence:RefSeq:WP_014375081.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009773796.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_014923418.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007633606.1
COORDINATES: similar to AA sequence:RefSeq:WP_013882287.1
COORDINATES: similar to AA sequence:RefSeq:WP_016997175.1
COORDINATES: similar to AA sequence:RefSeq:WP_018779732.1
COORDINATES: similar to AA sequence:RefSeq:WP_005272797.1
COORDINATES: similar to AA sequence:RefSeq:WP_017834365.1
plasmid mobilization relaxosome protein MobC
COORDINATES: protein motif:HMM:NF013540.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013599276.1
COORDINATES: similar to AA sequence:RefSeq:WP_005058070.1
COORDINATES: similar to AA sequence:RefSeq:WP_014923528.1
COORDINATES: protein motif:HMM:NF033679.1
COORDINATES: similar to AA sequence:RefSeq:WP_017832678.1
COORDINATES: similar to AA sequence:RefSeq:WP_013603147.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017572475.1
COORDINATES: similar to AA sequence:RefSeq:WP_017832681.1
COORDINATES: similar to AA sequence:RefSeq:WP_017832683.1
COORDINATES: similar to AA sequence:RefSeq:WP_017832684.1