Arthrobacter agilis strain TMP24 plasmid pAAG24-152, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Arthrobacter.
Comprehensive characterization of bacterial community isolated from the temporary meltwater ponds of the coastal area of East Antarctica
Submitted (10-FEB-2023) Center of analytical and genetic engineering research, Institute of Microbiology, National Academy of Sciences of Belarus, Kuprevich 2, Minsk 220084, Belarus
REFSEQ INFORMATION: The reference sequence is identical to\nCP117870.1.\nBacteria and source DNA available from Belarusian collection of\nnon-pathogenic microorganisms.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 31-JAN-2023\nAssembly Method :: Barapost v. 2022-08-02_edition; Flye v.\n 2.9.1-b1780; SPAdes v. 3.15.4\nAssembly Name :: Aag24_v1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 240.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/19/2023 16:09:23\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,569\nCDSs (total) :: 3,511\nGenes (coding) :: 3,481\nCDSs (with protein) :: 3,481\nGenes (RNA) :: 58\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 3\nPseudo Genes (total) :: 30\nCDSs (without protein) :: 30\nPseudo Genes (ambiguous residues) :: 0 of 30\nPseudo Genes (frameshifted) :: 8 of 30\nPseudo Genes (incomplete) :: 22 of 30\nPseudo Genes (internal stop) :: 7 of 30\nPseudo Genes (multiple problems) :: 6 of 30\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Middle part of the water column of temporary meltwater pond
COORDINATES: protein motif:HMM:NF013793.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_076611735.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003791859.1
putative sulfate exporter family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_016996892.1
COORDINATES: protein motif:HMM:NF039693.1
COORDINATES: similar to AA sequence:RefSeq:WP_019663840.1
COORDINATES: similar to AA sequence:RefSeq:WP_010204309.1
COORDINATES: protein motif:HMM:NF024139.2
histone-like nucleoid-structuring protein Lsr2
COORDINATES: similar to AA sequence:RefSeq:WP_005065018.1
COORDINATES: similar to AA sequence:RefSeq:WP_017774296.1
GO:0003886 - DNA (cytosine-5-)-methyltransferase activity [Evidence IEA]
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007175798.1
GO:0004520 - endodeoxyribonuclease activity [Evidence IEA]
GO:0006298 - mismatch repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006787580.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0009036 - type II site-specific deoxyribonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: protein motif:HMM:NF037501.2
COORDINATES: protein motif:HMM:NF039412.1
COORDINATES: protein motif:HMM:NF025448.2
COORDINATES: similar to AA sequence:RefSeq:WP_013116496.1
COORDINATES: protein motif:HMM:NF021594.2
COORDINATES: similar to AA sequence:RefSeq:WP_007272296.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015489380.1
COORDINATES: similar to AA sequence:RefSeq:WP_019481149.1
COORDINATES: similar to AA sequence:RefSeq:WP_019481148.1
COORDINATES: similar to AA sequence:RefSeq:WP_009408064.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019483902.1
COORDINATES: similar to AA sequence:RefSeq:WP_003806351.1
COORDINATES: similar to AA sequence:RefSeq:WP_015491423.1
COORDINATES: similar to AA sequence:RefSeq:WP_015491422.1
COORDINATES: similar to AA sequence:RefSeq:WP_018552211.1
COORDINATES: similar to AA sequence:RefSeq:WP_009154776.1
COORDINATES: similar to AA sequence:RefSeq:WP_020638886.1
COORDINATES: similar to AA sequence:RefSeq:WP_018190537.1
COORDINATES: similar to AA sequence:RefSeq:WP_018769418.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014922339.1
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011776581.1
COORDINATES: similar to AA sequence:RefSeq:WP_015939033.1
COORDINATES: similar to AA sequence:RefSeq:WP_010242552.1
COORDINATES: protein motif:HMM:NF025895.2
COORDINATES: similar to AA sequence:RefSeq:WP_015772164.1
GO:0032784 - regulation of DNA-templated transcription elongation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020519402.1
COORDINATES: similar to AA sequence:RefSeq:WP_005271885.1
COORDINATES: similar to AA sequence:RefSeq:WP_005268939.1
COORDINATES: protein motif:HMM:NF013231.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF012791.2
COORDINATES: similar to AA sequence:RefSeq:WP_007537534.1
GO:0004616 - phosphogluconate dehydrogenase (decarboxylating) activity [Evidence IEA]
GO:0006098 - pentose-phosphate shunt [Evidence IEA]
decarboxylating 6-phosphogluconate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_011931161.1
COORDINATES: similar to AA sequence:RefSeq:WP_019481180.1
helicase associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020098443.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689577.1
COORDINATES: similar to AA sequence:RefSeq:WP_018769835.1
COORDINATES: similar to AA sequence:RefSeq:WP_015772089.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011689580.1
COORDINATES: similar to AA sequence:RefSeq:WP_011186907.1
COORDINATES: similar to AA sequence:RefSeq:WP_019056160.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
glycoside hydrolase family 2 TIM barrel-domain containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009359350.1
COORDINATES: similar to AA sequence:RefSeq:WP_013602299.1
COORDINATES: similar to AA sequence:RefSeq:WP_019481563.1
COORDINATES: similar to AA sequence:RefSeq:WP_009357498.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_076612333.1
COORDINATES: similar to AA sequence:RefSeq:WP_013603183.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019481178.1
COORDINATES: protein motif:HMM:NF041492.1
COORDINATES: similar to AA sequence:RefSeq:WP_010143323.1
COORDINATES: similar to AA sequence:RefSeq:WP_019483190.1
COORDINATES: similar to AA sequence:RefSeq:WP_019483188.1
COORDINATES: similar to AA sequence:RefSeq:WP_011776989.1
GO:0017004 - cytochrome complex assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007633604.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_007633606.1
COORDINATES: protein motif:HMM:NF011362.0
GO:0005886 - plasma membrane [Evidence IEA]
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008720468.1
COORDINATES: similar to AA sequence:RefSeq:WP_011755106.1
heavy metal-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013599276.1
COORDINATES: similar to AA sequence:RefSeq:WP_005058070.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014923528.1
COORDINATES: protein motif:HMM:NF020387.2
COORDINATES: similar to AA sequence:RefSeq:WP_013115718.1
isoprenylcysteine carboxylmethyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002856944.1
vitamin K epoxide reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019311195.1
COORDINATES: similar to AA sequence:RefSeq:WP_013603034.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003884804.1
COORDINATES: similar to AA sequence:RefSeq:WP_003804068.1
COORDINATES: protein motif:HMM:NF016149.2
COORDINATES: similar to AA sequence:RefSeq:WP_013866068.1
COORDINATES: similar to AA sequence:RefSeq:WP_018384781.1
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_017829577.1
metal-dependent transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015402268.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02937.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_019481991.1
COORDINATES: protein motif:HMM:NF033748.1
COORDINATES: similar to AA sequence:RefSeq:WP_018779530.1
COORDINATES: similar to AA sequence:RefSeq:WP_019483229.1
LysM peptidoglycan-binding domain-containing protein
COORDINATES: nucleotide motif:Rfam:14.4:RF00379
cyclic di-AMP (ydaO/yuaA leader) riboswitch senses the signaling molecule cyclic di-AMP; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_019483230.1
metal-sensitive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011691589.1
four-helix bundle copper-binding protein
COORDINATES: protein motif:HMM:NF012621.2
heavy metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019484083.1
GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]; GO:0043682 - P-type divalent copper transporter activity [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010080267.1
COORDINATES: similar to AA sequence:RefSeq:WP_019481453.1
COORDINATES: protein motif:HMM:NF025700.2
COORDINATES: protein motif:HMM:NF014581.2
TraM recognition domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019481165.1
COORDINATES: similar to AA sequence:RefSeq:WP_019481164.1
transglycosylase SLT domain-containing protein
COORDINATES: protein motif:HMM:NF013209.2
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: similar to AA sequence:RefSeq:WP_013603139.1
COORDINATES: similar to AA sequence:RefSeq:WP_017832719.1
COORDINATES: similar to AA sequence:RefSeq:WP_018771443.1