Stegostoma fasciatum isolate 6-17 chromosome 48, sSteFas1.1, whole genome shotgun sequence.
type: Entry
definition: Stegostoma fasciatum isolate 6-17 chromosome 48, sSteFas1.1, whole genome shotgun sequence.
sequence version: NC_063431.1
sequence date: 2022-06-06
sequence: sequence
division: CON
label: NC_063431.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA844100
dblink: SAMN18022887
keyword: WGS
keyword: RefSeq
source: Stegostoma fasciatum
organism: Stegostoma fasciatum
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Orectolobiformes; Stegostomatidae; Stegostoma.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM039274.1.\nAssembly name: sSteFas1.1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Squalomix on 2022/02/17. The\noriginal whole-genome shotgun project has the accession\nJAFIRC000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Squalomix\nAssembly Date :: 22-FEB-2021\nAssembly Method :: Platanus v. 1.2.4; P_RNA_scaffolder v.\n commit 7941e0f on May 30, at github;\n 3D-DNA v. 180922\nAssembly Name :: sSteFas1.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 95.8x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Stegostoma fasciatum Annotation\n Release 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 5523776
topology: linear
so has quality: SO_0000987
location: 1..5523776
location: region:1-5523776:1
RO_0002162: 378071

NC_063431
type: RefSeq
SIO_000068: refseq

PRJNA844100
type: BioProject
SIO_000068: bioproject

SAMN18022887
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5523776:1
position: 5523776
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5523776:1:source
so part of: sequence
organism: Stegostoma fasciatum
mol type: genomic DNA
isolate: 6-17
chromosome: 48
sex: female
tissue type: blood
dev stage: adult
collection date: 2019-07-11

378071
type: Taxonomy
SIO_000068: taxonomy

trnak-cuu
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: trnak-cuu
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(116191..116263)
location: region:116191-116263:-1
so has part: feature:116191-116263:-1:exon
subclass of: SO_0000663

125449901
type: Gene
SIO_000068: ncbigene

position:116191:-1
position: 116191
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:116263:-1
position: 116263
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:116191-116263:-1:exon

trnak-cuu
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 378071
gene: trnak-cuu
product: tRNA-Lys
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA lysine (anticodon CUU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(116228..116230),aa:Lys,seq:ctt)
SIO_010081: trnak-cuu
subclass of: SO_0000673
so part of: trnak-cuu
location: complement(116191..116263)
location: region:116191-116263:-1
so has part: feature:116191-116263:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:116191-116263:-1:exon

trnaf-aaa
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: trnaf-aaa
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(125746..125827)
location: region:125746-125827:-1
so has part: feature:125746-125827:-1:exon
subclass of: SO_0000663

125449904
type: Gene
SIO_000068: ncbigene

position:125746:-1
position: 125746
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:125827:-1
position: 125827
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:125746-125827:-1:exon

trnaf-aaa
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 378071
gene: trnaf-aaa
product: tRNA-Phe
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA phenylalanine (anticodon AAA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(125792..125794),aa:Phe,seq:aaa)
SIO_010081: trnaf-aaa
subclass of: SO_0000673
so part of: trnaf-aaa
location: complement(125746..125827)
location: region:125746-125827:-1
so has part: feature:125746-125827:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:125746-125827:-1:exon

LOC125449886
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: LOC125449886
note: Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
so part of: sequence
location: 195881..196059
location: region:195881-196059:1
so has part: feature:195881-196059:1:exon

125449886
type: Gene
SIO_000068: ncbigene

position:195881:1
position: 195881
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:196059:1
position: 196059
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:195881-196059:1:exon

LOC125449886
type: Exon
subclass of: SO_0000147
RO_0002162: 378071
gene: LOC125449886
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00004
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
SIO_010081: LOC125449886
subclass of: SO_0000673
so part of: LOC125449886
location: 195881..196059
location: region:195881-196059:1
so has part: feature:195881-196059:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:195881-196059:1:exon

LOC125449879
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: LOC125449879
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 341927..344440
location: region:341927-344440:1
so has part: feature:341927-344440:1:exon
subclass of: SO_0000011

125449879
type: Gene
SIO_000068: ncbigene

position:341927:1
position: 341927
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:344440:1
position: 344440
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:341927-344440:1:exon

LOC125449879
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 378071
nc RNA class: lncRNA
gene: LOC125449879
product: uncharacterized LOC125449879
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
transcript id: XR_007246982.1
SIO_010081: LOC125449879
subclass of: SO_0000673
so part of: LOC125449879
location: join(341927..342040,342804..342882,344308..344440)
location: region:341927-344440:1
so has part: feature:341927-342040:1:exon
so has part: feature:342804-342882:1:exon
so has part: feature:344308-344440:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:341927-342040:1:exon

position:342040:1
position: 342040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:342804-342882:1:exon

position:342804:1
position: 342804
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:342882:1
position: 342882
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:344308-344440:1:exon

position:344308:1
position: 344308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125449882
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: LOC125449882
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 499261..506371
location: region:499261-506371:1
so has part: feature:499261-506371:1:exon
subclass of: SO_0000011

125449882
type: Gene
SIO_000068: ncbigene

position:499261:1
position: 499261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:506371:1
position: 506371
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:499261-506371:1:exon

LOC125449882
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 378071
nc RNA class: lncRNA
gene: LOC125449882
product: uncharacterized LOC125449882
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_007246985.1
SIO_010081: LOC125449882
subclass of: SO_0000673
so part of: LOC125449882
location: join(499261..499449,502216..502370,505355..506371)
location: region:499261-506371:1
so has part: feature:499261-499449:1:exon
so has part: feature:502216-502370:1:exon
so has part: feature:505355-506371:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:499261-499449:1:exon

position:499449:1
position: 499449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:502216-502370:1:exon

position:502216:1
position: 502216
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:502370:1
position: 502370
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:505355-506371:1:exon

position:505355:1
position: 505355
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125449884
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: LOC125449884
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(599145..614211)
location: region:599145-614211:-1
so has part: feature:599145-614211:-1:exon
subclass of: SO_0000011

125449884
type: Gene
SIO_000068: ncbigene

position:599145:-1
position: 599145
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:614211:-1
position: 614211
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:599145-614211:-1:exon

LOC125449884
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 378071
nc RNA class: lncRNA
gene: LOC125449884
product: uncharacterized LOC125449884
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XR_007246988.1
SIO_010081: LOC125449884
subclass of: SO_0000673
so part of: LOC125449884
location: complement(join(599145..605478,610424..610473,614167..614211))
location: region:599145-614211:-1
so has part: feature:614167-614211:-1:exon
so has part: feature:610424-610473:-1:exon
so has part: feature:599145-605478:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:614167-614211:-1:exon

position:614167:-1
position: 614167
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:610424-610473:-1:exon

position:610424:-1
position: 610424
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:610473:-1
position: 610473
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:599145-605478:-1:exon

position:605478:-1
position: 605478
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

trnar-ucg
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: trnar-ucg
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(652823..652895)
location: region:652823-652895:-1
so has part: feature:652823-652895:-1:exon
subclass of: SO_0000663

125449905
type: Gene
SIO_000068: ncbigene

position:652823:-1
position: 652823
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:652895:-1
position: 652895
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:652823-652895:-1:exon

trnar-ucg
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 378071
gene: trnar-ucg
product: tRNA-Arg
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA arginine (anticodon UCG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(652860..652862),aa:Arg,seq:tcg)
SIO_010081: trnar-ucg
subclass of: SO_0000673
so part of: trnar-ucg
location: complement(652823..652895)
location: region:652823-652895:-1
so has part: feature:652823-652895:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:652823-652895:-1:exon

trnav-aac
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: trnav-aac
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 669798..669870
location: region:669798-669870:1
so has part: feature:669798-669870:1:exon
subclass of: SO_0000663

125449891
type: Gene
SIO_000068: ncbigene

position:669798:1
position: 669798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:669870:1
position: 669870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:669798-669870:1:exon

trnav-aac
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 378071
gene: trnav-aac
product: tRNA-Val
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA valine (anticodon AAC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:669831..669833,aa:Val,seq:aac)
SIO_010081: trnav-aac
subclass of: SO_0000673
so part of: trnav-aac
location: 669798..669870
location: region:669798-669870:1
so has part: feature:669798-669870:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:669798-669870:1:exon

trnas-aga
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: trnas-aga
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(769301..769382)
location: region:769301-769382:-1
so has part: feature:769301-769382:-1:exon
subclass of: SO_0000663

125449906
type: Gene
SIO_000068: ncbigene

position:769301:-1
position: 769301
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:769382:-1
position: 769382
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:769301-769382:-1:exon

trnas-aga
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 378071
gene: trnas-aga
product: tRNA-Ser
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA serine (anticodon AGA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(769347..769349),aa:Ser,seq:aga)
SIO_010081: trnas-aga
subclass of: SO_0000673
so part of: trnas-aga
location: complement(769301..769382)
location: region:769301-769382:-1
so has part: feature:769301-769382:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:769301-769382:-1:exon

trnai-aau
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: trnai-aau
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(785030..785103)
location: region:785030-785103:-1
so has part: feature:785030-785103:-1:exon
subclass of: SO_0000663

125449907
type: Gene
SIO_000068: ncbigene

position:785030:-1
position: 785030
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:785103:-1
position: 785103
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:785030-785103:-1:exon

trnai-aau
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 378071
gene: trnai-aau
product: tRNA-Ile
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA isoleucine (anticodon AAU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(785067..785069),aa:Ile,seq:aat)
SIO_010081: trnai-aau
subclass of: SO_0000673
so part of: trnai-aau
location: complement(785030..785103)
location: region:785030-785103:-1
so has part: feature:785030-785103:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:785030-785103:-1:exon

trnai-aau
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: trnai-aau
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(836923..836996)
location: region:836923-836996:-1
so has part: feature:836923-836996:-1:exon
subclass of: SO_0000663

125449908
type: Gene
SIO_000068: ncbigene

position:836923:-1
position: 836923
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:836996:-1
position: 836996
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:836923-836996:-1:exon

trnai-aau
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 378071
gene: trnai-aau
product: tRNA-Ile
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA isoleucine (anticodon AAU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(836960..836962),aa:Ile,seq:aat)
SIO_010081: trnai-aau
subclass of: SO_0000673
so part of: trnai-aau
location: complement(836923..836996)
location: region:836923-836996:-1
so has part: feature:836923-836996:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:836923-836996:-1:exon

trnar-ucg
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: trnar-ucg
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 1103558..1103630
location: region:1103558-1103630:1
so has part: feature:1103558-1103630:1:exon
subclass of: SO_0000663

125449902
type: Gene
SIO_000068: ncbigene

position:1103558:1
position: 1103558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1103630:1
position: 1103630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1103558-1103630:1:exon

trnar-ucg
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 378071
gene: trnar-ucg
product: tRNA-Arg
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA arginine (anticodon UCG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:1103591..1103593,aa:Arg,seq:tcg)
SIO_010081: trnar-ucg
subclass of: SO_0000673
so part of: trnar-ucg
location: 1103558..1103630
location: region:1103558-1103630:1
so has part: feature:1103558-1103630:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1103558-1103630:1:exon

LOC125449881
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: LOC125449881
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1120631..1133646
location: region:1120631-1133646:1
so has part: feature:1120631-1133646:1:exon
subclass of: SO_0000011

125449881
type: Gene
SIO_000068: ncbigene

position:1120631:1
position: 1120631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1133646:1
position: 1133646
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1120631-1133646:1:exon

LOC125449881
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 378071
nc RNA class: lncRNA
gene: LOC125449881
product: uncharacterized LOC125449881
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_007246984.1
SIO_010081: LOC125449881
subclass of: SO_0000673
so part of: LOC125449881
location: join(1120631..1120813,1121810..1121985,1132461..1133646)
location: region:1120631-1133646:1
so has part: feature:1120631-1120813:1:exon
so has part: feature:1121810-1121985:1:exon
so has part: feature:1132461-1133646:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1120631-1120813:1:exon

position:1120813:1
position: 1120813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1121810-1121985:1:exon

position:1121810:1
position: 1121810
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1121985:1
position: 1121985
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1132461-1133646:1:exon

position:1132461:1
position: 1132461
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125449888
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: LOC125449888
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(1137408..1137595)
location: region:1137408-1137595:-1
so has part: feature:1137408-1137595:-1:exon
subclass of: SO_0000623

125449888
type: Gene
SIO_000068: ncbigene

position:1137408:-1
position: 1137408
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1137595:-1
position: 1137595
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1137408-1137595:-1:exon

LOC125449888
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 378071
nc RNA class: snRNA
gene: LOC125449888
product: U2 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00004
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_007246991.1
SIO_010081: LOC125449888
subclass of: SO_0000673
so part of: LOC125449888
location: complement(1137408..1137595)
location: region:1137408-1137595:-1
so has part: feature:1137408-1137595:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1137408-1137595:-1:exon

LOC125449890
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: LOC125449890
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 1278884..1279073
location: region:1278884-1279073:1
so has part: feature:1278884-1279073:1:exon
subclass of: SO_0000623

125449890
type: Gene
SIO_000068: ncbigene

position:1278884:1
position: 1278884
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1279073:1
position: 1279073
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1278884-1279073:1:exon

LOC125449890
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 378071
nc RNA class: snRNA
gene: LOC125449890
product: U2 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00004
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_007246993.1
SIO_010081: LOC125449890
subclass of: SO_0000673
so part of: LOC125449890
location: 1278884..1279073
location: region:1278884-1279073:1
so has part: feature:1278884-1279073:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1278884-1279073:1:exon

LOC125449883
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: LOC125449883
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1294565..1305492
location: region:1294565-1305492:1
so has part: feature:1294565-1305492:1:exon
subclass of: SO_0000011

125449883
type: Gene
SIO_000068: ncbigene

position:1294565:1
position: 1294565
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1305492:1
position: 1305492
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1294565-1305492:1:exon

LOC125449883
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 378071
nc RNA class: lncRNA
gene: LOC125449883
product: uncharacterized LOC125449883, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XR_007246986.1
SIO_010081: LOC125449883
subclass of: SO_0000673
so part of: LOC125449883
location: join(1294565..1294643,1295864..1295994,1298099..1298185,1299194..1299252,1300612..1300684,1304530..1305492)
location: region:1294565-1305492:1
so has part: feature:1294565-1294643:1:exon
so has part: feature:1295864-1295994:1:exon
so has part: feature:1298099-1298185:1:exon
so has part: feature:1299194-1299252:1:exon
so has part: feature:1300612-1300684:1:exon
so has part: feature:1304530-1305492:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1294565-1294643:1:exon

position:1294643:1
position: 1294643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1295864-1295994:1:exon

position:1295864:1
position: 1295864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1295994:1
position: 1295994
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1298099-1298185:1:exon

position:1298099:1
position: 1298099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1298185:1
position: 1298185
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1299194-1299252:1:exon

position:1299194:1
position: 1299194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1299252:1
position: 1299252
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1300612-1300684:1:exon

position:1300612:1
position: 1300612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1300684:1
position: 1300684
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1304530-1305492:1:exon

position:1304530:1
position: 1304530
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125449883
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 378071
nc RNA class: lncRNA
gene: LOC125449883
product: uncharacterized LOC125449883, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XR_007246987.1
SIO_010081: LOC125449883
subclass of: SO_0000673
so part of: LOC125449883
location: join(1294565..1294643,1295864..1295994,1299194..1299252,1300612..1300684,1304530..1305492)
location: region:1294565-1305492:1
so has part: feature:1294565-1294643:1:exon
so has part: feature:1295864-1295994:1:exon
so has part: feature:1299194-1299252:1:exon
so has part: feature:1300612-1300684:1:exon
so has part: feature:1304530-1305492:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1294565-1294643:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1295864-1295994:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1299194-1299252:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1300612-1300684:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1304530-1305492:1:exon

trnam-cau
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: trnam-cau
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(1398806..1398878)
location: region:1398806-1398878:-1
so has part: feature:1398806-1398878:-1:exon
subclass of: SO_0000663

125449909
type: Gene
SIO_000068: ncbigene

position:1398806:-1
position: 1398806
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1398878:-1
position: 1398878
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1398806-1398878:-1:exon

trnam-cau
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 378071
gene: trnam-cau
product: tRNA-Met
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA methionine (anticodon CAU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(1398843..1398845),aa:Met, seq:cat)
SIO_010081: trnam-cau
subclass of: SO_0000673
so part of: trnam-cau
location: complement(1398806..1398878)
location: region:1398806-1398878:-1
so has part: feature:1398806-1398878:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1398806-1398878:-1:exon

LOC125449880
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: LOC125449880
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1403777..1441192
location: region:1403777-1441192:1
so has part: feature:1403777-1441192:1:exon
subclass of: SO_0000011

125449880
type: Gene
SIO_000068: ncbigene

position:1403777:1
position: 1403777
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1441192:1
position: 1441192
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1403777-1441192:1:exon

LOC125449880
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 378071
nc RNA class: lncRNA
gene: LOC125449880
product: uncharacterized LOC125449880
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
transcript id: XR_007246983.1
SIO_010081: LOC125449880
subclass of: SO_0000673
so part of: LOC125449880
location: join(1403777..1403963,1405814..1405968,1440946..1441192)
location: region:1403777-1441192:1
so has part: feature:1403777-1403963:1:exon
so has part: feature:1405814-1405968:1:exon
so has part: feature:1440946-1441192:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1403777-1403963:1:exon

position:1403963:1
position: 1403963
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1405814-1405968:1:exon

position:1405814:1
position: 1405814
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1405968:1
position: 1405968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1440946-1441192:1:exon

position:1440946:1
position: 1440946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125449887
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: LOC125449887
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(1449693..1449886)
location: region:1449693-1449886:-1
so has part: feature:1449693-1449886:-1:exon
subclass of: SO_0000623

125449887
type: Gene
SIO_000068: ncbigene

position:1449693:-1
position: 1449693
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1449886:-1
position: 1449886
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1449693-1449886:-1:exon

LOC125449887
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 378071
nc RNA class: snRNA
gene: LOC125449887
product: U2 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00004
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_007246990.1
SIO_010081: LOC125449887
subclass of: SO_0000673
so part of: LOC125449887
location: complement(1449693..1449886)
location: region:1449693-1449886:-1
so has part: feature:1449693-1449886:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1449693-1449886:-1:exon

trnaw-cca
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: trnaw-cca
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(1760761..1760832)
location: region:1760761-1760832:-1
so has part: feature:1760761-1760832:-1:exon
subclass of: SO_0000663

125449910
type: Gene
SIO_000068: ncbigene

position:1760761:-1
position: 1760761
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1760832:-1
position: 1760832
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1760761-1760832:-1:exon

trnaw-cca
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 378071
gene: trnaw-cca
product: tRNA-Trp
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA tryptophan (anticodon CCA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(1760798..1760800),aa:Trp, seq:cca)
SIO_010081: trnaw-cca
subclass of: SO_0000673
so part of: trnaw-cca
location: complement(1760761..1760832)
location: region:1760761-1760832:-1
so has part: feature:1760761-1760832:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1760761-1760832:-1:exon

LOC125449873
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: LOC125449873
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1842047..1859305)
location: region:1842047-1859305:-1
so has part: feature:1842047-1859305:-1:exon
subclass of: SO_0000011

125449873
type: Gene
SIO_000068: ncbigene

position:1842047:-1
position: 1842047
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1859305:-1
position: 1859305
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1842047-1859305:-1:exon

LOC125449873
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 378071
nc RNA class: lncRNA
gene: LOC125449873
product: uncharacterized LOC125449873
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
transcript id: XR_007246977.1
SIO_010081: LOC125449873
subclass of: SO_0000673
so part of: LOC125449873
location: complement(join(1842047..1843813,1854323..1854477,1858165..1859305))
location: region:1842047-1859305:-1
so has part: feature:1858165-1859305:-1:exon
so has part: feature:1854323-1854477:-1:exon
so has part: feature:1842047-1843813:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1858165-1859305:-1:exon

position:1858165:-1
position: 1858165
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1854323-1854477:-1:exon

position:1854323:-1
position: 1854323
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1854477:-1
position: 1854477
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1842047-1843813:-1:exon

position:1843813:-1
position: 1843813
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

trnat-ugu
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: trnat-ugu
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(1860723..1860795)
location: region:1860723-1860795:-1
so has part: feature:1860723-1860795:-1:exon
subclass of: SO_0000663

125449911
type: Gene
SIO_000068: ncbigene

position:1860723:-1
position: 1860723
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1860795:-1
position: 1860795
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1860723-1860795:-1:exon

trnat-ugu
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 378071
gene: trnat-ugu
product: tRNA-Thr
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA threonine (anticodon UGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(1860760..1860762),aa:Thr, seq:tgt)
SIO_010081: trnat-ugu
subclass of: SO_0000673
so part of: trnat-ugu
location: complement(1860723..1860795)
location: region:1860723-1860795:-1
so has part: feature:1860723-1860795:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1860723-1860795:-1:exon

LOC125449868
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: LOC125449868
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1866990..1893230
location: region:1866990-1893230:1
so has part: feature:1866990-1893230:1:exon
subclass of: SO_0000011

125449868
type: Gene
SIO_000068: ncbigene

position:1866990:1
position: 1866990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1893230:1
position: 1893230
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1866990-1893230:1:exon

LOC125449868
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 378071
nc RNA class: lncRNA
gene: LOC125449868
product: uncharacterized LOC125449868
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_007246971.1
SIO_010081: LOC125449868
subclass of: SO_0000673
so part of: LOC125449868
location: join(1866990..1867167,1870119..1870267,1886443..1886542,1892214..1893230)
location: region:1866990-1893230:1
so has part: feature:1866990-1867167:1:exon
so has part: feature:1870119-1870267:1:exon
so has part: feature:1886443-1886542:1:exon
so has part: feature:1892214-1893230:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1866990-1867167:1:exon

position:1867167:1
position: 1867167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1870119-1870267:1:exon

position:1870119:1
position: 1870119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1870267:1
position: 1870267
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1886443-1886542:1:exon

position:1886443:1
position: 1886443
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1886542:1
position: 1886542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1892214-1893230:1:exon

position:1892214:1
position: 1892214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

trnap-ugg
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: trnap-ugg
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 1940545..1940634
location: region:1940545-1940634:1
so has part: feature:1940545-1940634:1:exon
subclass of: SO_0000663

125449914
type: Gene
SIO_000068: ncbigene

position:1940545:1
position: 1940545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1940634:1
position: 1940634
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1940545-1940634:1:exon

trnap-ugg
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 378071
gene: trnap-ugg
product: tRNA-Pro
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA proline (anticodon UGG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:1940577..1940579,aa:Pro,seq:tgg)
SIO_010081: trnap-ugg
subclass of: SO_0000673
so part of: trnap-ugg
location: join(1940545..1940580,1940599..1940634)
location: region:1940545-1940634:1
so has part: feature:1940545-1940580:1:exon
so has part: feature:1940599-1940634:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1940545-1940580:1:exon

position:1940580:1
position: 1940580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1940599-1940634:1:exon

position:1940599:1
position: 1940599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

trnat-ugu
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: trnat-ugu
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(1945383..1945455)
location: region:1945383-1945455:-1
so has part: feature:1945383-1945455:-1:exon
subclass of: SO_0000663

125449912
type: Gene
SIO_000068: ncbigene

position:1945383:-1
position: 1945383
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1945455:-1
position: 1945455
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1945383-1945455:-1:exon

trnat-ugu
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 378071
gene: trnat-ugu
product: tRNA-Thr
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA threonine (anticodon UGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(1945420..1945422),aa:Thr, seq:tgt)
SIO_010081: trnat-ugu
subclass of: SO_0000673
so part of: trnat-ugu
location: complement(1945383..1945455)
location: region:1945383-1945455:-1
so has part: feature:1945383-1945455:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1945383-1945455:-1:exon

LOC125449867
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: LOC125449867
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2009734..2039764
location: region:2009734-2039764:1
so has part: feature:2009734-2039764:1:exon
subclass of: SO_0000011

125449867
type: Gene
SIO_000068: ncbigene

position:2009734:1
position: 2009734
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2039764:1
position: 2039764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2009734-2039764:1:exon

LOC125449867
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 378071
nc RNA class: lncRNA
gene: LOC125449867
product: uncharacterized LOC125449867, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
transcript id: XR_007246969.1
SIO_010081: LOC125449867
subclass of: SO_0000673
so part of: LOC125449867
location: join(2009734..2009997,2014842..2016479,2039612..2039764)
location: region:2009734-2039764:1
so has part: feature:2009734-2009997:1:exon
so has part: feature:2014842-2016479:1:exon
so has part: feature:2039612-2039764:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2009734-2009997:1:exon

position:2009997:1
position: 2009997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2014842-2016479:1:exon

position:2014842:1
position: 2014842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2016479:1
position: 2016479
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2039612-2039764:1:exon

position:2039612:1
position: 2039612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125449867
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 378071
nc RNA class: lncRNA
gene: LOC125449867
product: uncharacterized LOC125449867, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
transcript id: XR_007246970.1
SIO_010081: LOC125449867
subclass of: SO_0000673
so part of: LOC125449867
location: join(2009778..2009997,2014842..2014988,2016852..2017169)
location: region:2009778-2017169:1
so has part: feature:2009778-2009997:1:exon
so has part: feature:2014842-2014988:1:exon
so has part: feature:2016852-2017169:1:exon

position:2009778:1
position: 2009778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2017169:1
position: 2017169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2009778-2009997:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2014842-2014988:1:exon

position:2014988:1
position: 2014988
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2016852-2017169:1:exon

position:2016852:1
position: 2016852
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125449870
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: LOC125449870
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2022058..2030612
location: region:2022058-2030612:1
so has part: feature:2022058-2030612:1:exon
subclass of: SO_0000011

125449870
type: Gene
SIO_000068: ncbigene

position:2022058:1
position: 2022058
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2030612:1
position: 2030612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2022058-2030612:1:exon

LOC125449870
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 378071
nc RNA class: lncRNA
gene: LOC125449870
product: uncharacterized LOC125449870
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_007246975.1
SIO_010081: LOC125449870
subclass of: SO_0000673
so part of: LOC125449870
location: join(2022058..2023909,2029042..2030612)
location: region:2022058-2030612:1
so has part: feature:2022058-2023909:1:exon
so has part: feature:2029042-2030612:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2022058-2023909:1:exon

position:2023909:1
position: 2023909
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2029042-2030612:1:exon

position:2029042:1
position: 2029042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125449889
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: LOC125449889
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(2032687..2032868)
location: region:2032687-2032868:-1
so has part: feature:2032687-2032868:-1:exon
subclass of: SO_0000623

125449889
type: Gene
SIO_000068: ncbigene

position:2032687:-1
position: 2032687
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2032868:-1
position: 2032868
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2032687-2032868:-1:exon

LOC125449889
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 378071
nc RNA class: snRNA
gene: LOC125449889
product: U2 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00004
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_007246992.1
SIO_010081: LOC125449889
subclass of: SO_0000673
so part of: LOC125449889
location: complement(2032687..2032868)
location: region:2032687-2032868:-1
so has part: feature:2032687-2032868:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2032687-2032868:-1:exon

trnae-uuc
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: trnae-uuc
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(2161193..2161264)
location: region:2161193-2161264:-1
so has part: feature:2161193-2161264:-1:exon
subclass of: SO_0000663

125449913
type: Gene
SIO_000068: ncbigene

position:2161193:-1
position: 2161193
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2161264:-1
position: 2161264
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2161193-2161264:-1:exon

trnae-uuc
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 378071
gene: trnae-uuc
product: tRNA-Glu
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA glutamic acid (anticodon UUC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(2161229..2161231),aa:Glu, seq:ttc)
SIO_010081: trnae-uuc
subclass of: SO_0000673
so part of: trnae-uuc
location: complement(2161193..2161264)
location: region:2161193-2161264:-1
so has part: feature:2161193-2161264:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2161193-2161264:-1:exon

trnat-agu
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: trnat-agu
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 2511917..2511990
location: region:2511917-2511990:1
so has part: feature:2511917-2511990:1:exon
subclass of: SO_0000663

125449922
type: Gene
SIO_000068: ncbigene

position:2511917:1
position: 2511917
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2511990:1
position: 2511990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2511917-2511990:1:exon

trnat-agu
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 378071
gene: trnat-agu
product: tRNA-Thr
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA threonine (anticodon AGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:2511951..2511953,aa:Thr,seq:agt)
SIO_010081: trnat-agu
subclass of: SO_0000673
so part of: trnat-agu
location: 2511917..2511990
location: region:2511917-2511990:1
so has part: feature:2511917-2511990:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2511917-2511990:1:exon

trnat-agu
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: trnat-agu
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 2517626..2517699
location: region:2517626-2517699:1
so has part: feature:2517626-2517699:1:exon
subclass of: SO_0000663

125449923
type: Gene
SIO_000068: ncbigene

position:2517626:1
position: 2517626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2517699:1
position: 2517699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2517626-2517699:1:exon

trnat-agu
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 378071
gene: trnat-agu
product: tRNA-Thr
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA threonine (anticodon AGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:2517660..2517662,aa:Thr,seq:agt)
SIO_010081: trnat-agu
subclass of: SO_0000673
so part of: trnat-agu
location: 2517626..2517699
location: region:2517626-2517699:1
so has part: feature:2517626-2517699:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2517626-2517699:1:exon

LOC125449874
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: LOC125449874
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2582612..2602657
location: region:2582612-2602657:1
so has part: feature:2582612-2602657:1:exon
subclass of: SO_0000011

125449874
type: Gene
SIO_000068: ncbigene

position:2582612:1
position: 2582612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2602657:1
position: 2602657
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2582612-2602657:1:exon

LOC125449874
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 378071
nc RNA class: lncRNA
gene: LOC125449874
product: uncharacterized LOC125449874
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
transcript id: XR_007246978.1
SIO_010081: LOC125449874
subclass of: SO_0000673
so part of: LOC125449874
location: join(2582612..2582667,2583525..2583656,2584235..2584236,2602612..2602657)
location: region:2582612-2602657:1
so has part: feature:2582612-2582667:1:exon
so has part: feature:2583525-2583656:1:exon
so has part: feature:2584235-2584236:1:exon
so has part: feature:2602612-2602657:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2582612-2582667:1:exon

position:2582667:1
position: 2582667
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2583525-2583656:1:exon

position:2583525:1
position: 2583525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2583656:1
position: 2583656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2584235-2584236:1:exon

position:2584235:1
position: 2584235
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2584236:1
position: 2584236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2602612-2602657:1:exon

position:2602612:1
position: 2602612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125449872
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: LOC125449872
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2647053..2653508)
location: region:2647053-2653508:-1
so has part: feature:2647053-2653508:-1:exon
subclass of: SO_0000011

125449872
type: Gene
SIO_000068: ncbigene

position:2647053:-1
position: 2647053
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2653508:-1
position: 2653508
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2647053-2653508:-1:exon

LOC125449872
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 378071
nc RNA class: lncRNA
gene: LOC125449872
product: uncharacterized LOC125449872
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XR_007246976.1
SIO_010081: LOC125449872
subclass of: SO_0000673
so part of: LOC125449872
location: complement(join(2647053..2648255,2651713..2652011,2652825..2653508))
location: region:2647053-2653508:-1
so has part: feature:2652825-2653508:-1:exon
so has part: feature:2651713-2652011:-1:exon
so has part: feature:2647053-2648255:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2652825-2653508:-1:exon

position:2652825:-1
position: 2652825
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2651713-2652011:-1:exon

position:2651713:-1
position: 2651713
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2652011:-1
position: 2652011
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2647053-2648255:-1:exon

position:2648255:-1
position: 2648255
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC125449875
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: LOC125449875
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2675608..2684516)
location: region:2675608-2684516:-1
so has part: feature:2675608-2684516:-1:exon
subclass of: SO_0000011

125449875
type: Gene
SIO_000068: ncbigene

position:2675608:-1
position: 2675608
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2684516:-1
position: 2684516
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2675608-2684516:-1:exon

LOC125449875
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 378071
nc RNA class: lncRNA
gene: LOC125449875
product: uncharacterized LOC125449875
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XR_007246979.1
SIO_010081: LOC125449875
subclass of: SO_0000673
so part of: LOC125449875
location: complement(join(2675608..2675654,2683199..2683330,2684450..2684516))
location: region:2675608-2684516:-1
so has part: feature:2684450-2684516:-1:exon
so has part: feature:2683199-2683330:-1:exon
so has part: feature:2675608-2675654:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2684450-2684516:-1:exon

position:2684450:-1
position: 2684450
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2683199-2683330:-1:exon

position:2683199:-1
position: 2683199
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2683330:-1
position: 2683330
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2675608-2675654:-1:exon

position:2675654:-1
position: 2675654
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC125449866
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: LOC125449866
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2695867..2708073
location: region:2695867-2708073:1
so has part: feature:2695867-2708073:1:exon
subclass of: SO_0000011

125449866
type: Gene
SIO_000068: ncbigene

position:2695867:1
position: 2695867
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2708073:1
position: 2708073
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2695867-2708073:1:exon

LOC125449866
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 378071
nc RNA class: lncRNA
gene: LOC125449866
product: uncharacterized LOC125449866, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
transcript id: XR_007246968.1
SIO_010081: LOC125449866
subclass of: SO_0000673
so part of: LOC125449866
location: join(2695867..2695969,2697210..2697341,2699843..2699957,2707626..2708073)
location: region:2695867-2708073:1
so has part: feature:2695867-2695969:1:exon
so has part: feature:2697210-2697341:1:exon
so has part: feature:2699843-2699957:1:exon
so has part: feature:2707626-2708073:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2695867-2695969:1:exon

position:2695969:1
position: 2695969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2697210-2697341:1:exon

position:2697210:1
position: 2697210
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2697341:1
position: 2697341
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2699843-2699957:1:exon

position:2699843:1
position: 2699843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2699957:1
position: 2699957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2707626-2708073:1:exon

position:2707626:1
position: 2707626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125449866
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 378071
nc RNA class: lncRNA
gene: LOC125449866
product: uncharacterized LOC125449866, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
transcript id: XR_007246967.1
SIO_010081: LOC125449866
subclass of: SO_0000673
so part of: LOC125449866
location: join(2695867..2695969,2697210..2697341,2699843..2702113)
location: region:2695867-2702113:1
so has part: feature:2695867-2695969:1:exon
so has part: feature:2697210-2697341:1:exon
so has part: feature:2699843-2702113:1:exon

position:2702113:1
position: 2702113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2695867-2695969:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2697210-2697341:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2699843-2702113:1:exon

trnae-uuc
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: trnae-uuc
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(2849397..2849468)
location: region:2849397-2849468:-1
so has part: feature:2849397-2849468:-1:exon
subclass of: SO_0000663

125449915
type: Gene
SIO_000068: ncbigene

position:2849397:-1
position: 2849397
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2849468:-1
position: 2849468
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2849397-2849468:-1:exon

trnae-uuc
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 378071
gene: trnae-uuc
product: tRNA-Glu
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA glutamic acid (anticodon UUC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(2849433..2849435),aa:Glu, seq:ttc)
SIO_010081: trnae-uuc
subclass of: SO_0000673
so part of: trnae-uuc
location: complement(2849397..2849468)
location: region:2849397-2849468:-1
so has part: feature:2849397-2849468:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2849397-2849468:-1:exon

LOC125449877
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: LOC125449877
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2873208..2877752
location: region:2873208-2877752:1
so has part: feature:2873208-2877752:1:exon
subclass of: SO_0000011

125449877
type: Gene
SIO_000068: ncbigene

position:2873208:1
position: 2873208
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2877752:1
position: 2877752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2873208-2877752:1:exon

LOC125449877
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 378071
nc RNA class: lncRNA
gene: LOC125449877
product: uncharacterized LOC125449877
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_007246981.1
SIO_010081: LOC125449877
subclass of: SO_0000673
so part of: LOC125449877
location: join(2873208..2874379,2876815..2877752)
location: region:2873208-2877752:1
so has part: feature:2873208-2874379:1:exon
so has part: feature:2876815-2877752:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2873208-2874379:1:exon

position:2874379:1
position: 2874379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2876815-2877752:1:exon

position:2876815:1
position: 2876815
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125449869
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: LOC125449869
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2884982..2901883
location: region:2884982-2901883:1
so has part: feature:2884982-2901883:1:exon
subclass of: SO_0000011

125449869
type: Gene
SIO_000068: ncbigene

position:2884982:1
position: 2884982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2901883:1
position: 2901883
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2884982-2901883:1:exon

LOC125449869
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 378071
nc RNA class: lncRNA
gene: LOC125449869
product: uncharacterized LOC125449869, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_007246972.1
SIO_010081: LOC125449869
subclass of: SO_0000673
so part of: LOC125449869
location: join(2884982..2885045,2889446..2889598,2895824..2895921,2901482..2901883)
location: region:2884982-2901883:1
so has part: feature:2884982-2885045:1:exon
so has part: feature:2889446-2889598:1:exon
so has part: feature:2895824-2895921:1:exon
so has part: feature:2901482-2901883:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2884982-2885045:1:exon

position:2885045:1
position: 2885045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2889446-2889598:1:exon

position:2889446:1
position: 2889446
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2889598:1
position: 2889598
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2895824-2895921:1:exon

position:2895824:1
position: 2895824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2895921:1
position: 2895921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2901482-2901883:1:exon

position:2901482:1
position: 2901482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125449869
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 378071
nc RNA class: lncRNA
gene: LOC125449869
product: uncharacterized LOC125449869, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_007246973.1
SIO_010081: LOC125449869
subclass of: SO_0000673
so part of: LOC125449869
location: join(2885031..2885045,2889446..2889487,2895824..2895921,2901482..2901883)
location: region:2885031-2901883:1
so has part: feature:2885031-2885045:1:exon
so has part: feature:2889446-2889487:1:exon
so has part: feature:2895824-2895921:1:exon
so has part: feature:2901482-2901883:1:exon

position:2885031:1
position: 2885031
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2885031-2885045:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2889446-2889487:1:exon

position:2889487:1
position: 2889487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2895824-2895921:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2901482-2901883:1:exon

LOC125449869
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 378071
nc RNA class: lncRNA
gene: LOC125449869
product: uncharacterized LOC125449869, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XR_007246974.1
SIO_010081: LOC125449869
subclass of: SO_0000673
so part of: LOC125449869
location: join(2891381..2891465,2895824..2895921,2901482..2901883)
location: region:2891381-2901883:1
so has part: feature:2891381-2891465:1:exon
so has part: feature:2895824-2895921:1:exon
so has part: feature:2901482-2901883:1:exon

position:2891381:1
position: 2891381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2891381-2891465:1:exon

position:2891465:1
position: 2891465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2895824-2895921:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2901482-2901883:1:exon

LOC125449878
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: LOC125449878
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2901977..2922658
location: region:2901977-2922658:1
so has part: feature:2901977-2922658:1:exon
subclass of: SO_0000010

125449878
type: Gene
SIO_000068: ncbigene

position:2901977:1
position: 2901977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2922658:1
position: 2922658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2901977-2922658:1:exon

LOC125449878
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 378071
gene: LOC125449878
product: zinc finger protein 239-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 97% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_048525814.1
SIO_010081: LOC125449878
subclass of: SO_0000673
so part of: LOC125449878
location: join(2901977..2902818,2916947..2917284,2922644..2922658)
location: region:2901977-2922658:1
so has part: feature:2901977-2902818:1:exon
so has part: feature:2916947-2917284:1:exon
so has part: feature:2922644-2922658:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2901977-2902818:1:exon

position:2902818:1
position: 2902818
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2916947-2917284:1:exon

position:2916947:1
position: 2916947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2917284:1
position: 2917284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2922644-2922658:1:exon

position:2922644:1
position: 2922644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125449878
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 378071
gene: LOC125449878
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein 239-like
translation: MPEYQSSDTGERLWKCADCKKEFLHSSQLETDHQSHTGERPFTRFDCGMGFTQSSNLLKHQRVHTGEKPFTCSECGKAFTQTLQMLIHQRIHIGERLLTCSVCGKGFADSNSPLIHQRLHSGERPFMSSECGKVFTVIQTANMVVTIVLSRKSYGLSRCITYYMVSMAAGDLLVIITSVILNRIASMYFPISFLSITPLCSLRSVLKYGTFSMSAWLTVAFTIDRFVEICCQKLKTKYCTKRIAGLVIVIVCAVGVR
SIO_010081: LOC125449878
subclass of: SO_0000673
so part of: LOC125449878
location: join(2902398..2902818,2916947..2917284,2922644..2922658)
location: region:2902398-2922658:1
so has part: feature:2902398-2902818:1:exon
so has part: feature:2916947-2917284:1:exon
so has part: feature:2922644-2922658:1:exon

XP_048381771.1
type: Protein
SIO_000068: ncbiprotein

position:2902398:1
position: 2902398
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2902398-2902818:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2916947-2917284:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2922644-2922658:1:exon

trnap-agg
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: trnap-agg
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(2979630..2979719)
location: region:2979630-2979719:-1
so has part: feature:2979630-2979719:-1:exon
subclass of: SO_0000663

125449916
type: Gene
SIO_000068: ncbigene

position:2979630:-1
position: 2979630
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2979719:-1
position: 2979719
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2979630-2979719:-1:exon

trnap-agg
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 378071
gene: trnap-agg
product: tRNA-Pro
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA proline (anticodon AGG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(2979685..2979687),aa:Pro, seq:agg)
SIO_010081: trnap-agg
subclass of: SO_0000673
so part of: trnap-agg
location: complement(join(2979630..2979665,2979684..2979719))
location: region:2979630-2979719:-1
so has part: feature:2979684-2979719:-1:exon
so has part: feature:2979630-2979665:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2979684-2979719:-1:exon

position:2979684:-1
position: 2979684
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2979630-2979665:-1:exon

position:2979665:-1
position: 2979665
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

trnan-guu
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: trnan-guu
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(3051724..3051797)
location: region:3051724-3051797:-1
so has part: feature:3051724-3051797:-1:exon
subclass of: SO_0000663

125449917
type: Gene
SIO_000068: ncbigene

position:3051724:-1
position: 3051724
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3051797:-1
position: 3051797
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3051724-3051797:-1:exon

trnan-guu
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 378071
gene: trnan-guu
product: tRNA-Asn
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA asparagine (anticodon GUU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(3051761..3051763),aa:Asn, seq:gtt)
SIO_010081: trnan-guu
subclass of: SO_0000673
so part of: trnan-guu
location: complement(3051724..3051797)
location: region:3051724-3051797:-1
so has part: feature:3051724-3051797:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3051724-3051797:-1:exon

trnan-guu
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: trnan-guu
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 3055068..3055141
location: region:3055068-3055141:1
so has part: feature:3055068-3055141:1:exon
subclass of: SO_0000663

125449892
type: Gene
SIO_000068: ncbigene

position:3055068:1
position: 3055068
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3055141:1
position: 3055141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3055068-3055141:1:exon

trnan-guu
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 378071
gene: trnan-guu
product: tRNA-Asn
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA asparagine (anticodon GUU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:3055102..3055104,aa:Asn,seq:gtt)
SIO_010081: trnan-guu
subclass of: SO_0000673
so part of: trnan-guu
location: 3055068..3055141
location: region:3055068-3055141:1
so has part: feature:3055068-3055141:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3055068-3055141:1:exon

trnah-gug
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: trnah-gug
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(3230506..3230579)
location: region:3230506-3230579:-1
so has part: feature:3230506-3230579:-1:exon
subclass of: SO_0000663

125449918
type: Gene
SIO_000068: ncbigene

position:3230506:-1
position: 3230506
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3230579:-1
position: 3230579
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3230506-3230579:-1:exon

trnah-gug
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 378071
gene: trnah-gug
product: tRNA-His
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA histidin (anticodon GUG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(3230543..3230545),aa:His, seq:gtg)
SIO_010081: trnah-gug
subclass of: SO_0000673
so part of: trnah-gug
location: complement(3230506..3230579)
location: region:3230506-3230579:-1
so has part: feature:3230506-3230579:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3230506-3230579:-1:exon

trnan-guu
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: trnan-guu
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 3233847..3233920
location: region:3233847-3233920:1
so has part: feature:3233847-3233920:1:exon
subclass of: SO_0000663

125449893
type: Gene
SIO_000068: ncbigene

position:3233847:1
position: 3233847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3233920:1
position: 3233920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3233847-3233920:1:exon

trnan-guu
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 378071
gene: trnan-guu
product: tRNA-Asn
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA asparagine (anticodon GUU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:3233881..3233883,aa:Asn,seq:gtt)
SIO_010081: trnan-guu
subclass of: SO_0000673
so part of: trnan-guu
location: 3233847..3233920
location: region:3233847-3233920:1
so has part: feature:3233847-3233920:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3233847-3233920:1:exon

LOC125449876
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: LOC125449876
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3385814..3386410
location: region:3385814-3386410:1
so has part: feature:3385814-3386410:1:exon
subclass of: SO_0000011

125449876
type: Gene
SIO_000068: ncbigene

position:3385814:1
position: 3385814
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3386410:1
position: 3386410
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3385814-3386410:1:exon

LOC125449876
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 378071
nc RNA class: lncRNA
gene: LOC125449876
product: uncharacterized LOC125449876
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XR_007246980.1
SIO_010081: LOC125449876
subclass of: SO_0000673
so part of: LOC125449876
location: join(3385814..3385845,3386044..3386410)
location: region:3385814-3386410:1
so has part: feature:3385814-3385845:1:exon
so has part: feature:3386044-3386410:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3385814-3385845:1:exon

position:3385845:1
position: 3385845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3386044-3386410:1:exon

position:3386044:1
position: 3386044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

trnas-gcu
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: trnas-gcu
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(3808934..3809015)
location: region:3808934-3809015:-1
so has part: feature:3808934-3809015:-1:exon
subclass of: SO_0000663

125449919
type: Gene
SIO_000068: ncbigene

position:3808934:-1
position: 3808934
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3809015:-1
position: 3809015
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3808934-3809015:-1:exon

trnas-gcu
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 378071
gene: trnas-gcu
product: tRNA-Ser
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA serine (anticodon GCU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(3808980..3808982),aa:Ser, seq:gct)
SIO_010081: trnas-gcu
subclass of: SO_0000673
so part of: trnas-gcu
location: complement(3808934..3809015)
location: region:3808934-3809015:-1
so has part: feature:3808934-3809015:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3808934-3809015:-1:exon

LOC125449865
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: LOC125449865
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3867182..3886914)
location: region:3867182-3886914:-1
so has part: feature:3867182-3886914:-1:exon
subclass of: SO_0000011

125449865
type: Gene
SIO_000068: ncbigene

position:3867182:-1
position: 3867182
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3886914:-1
position: 3886914
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3867182-3886914:-1:exon

LOC125449865
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 378071
nc RNA class: lncRNA
gene: LOC125449865
product: uncharacterized LOC125449865, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_007246966.1
SIO_010081: LOC125449865
subclass of: SO_0000673
so part of: LOC125449865
location: complement(join(3867182..3867775,3883246..3883400,3886742..3886914))
location: region:3867182-3886914:-1
so has part: feature:3886742-3886914:-1:exon
so has part: feature:3883246-3883400:-1:exon
so has part: feature:3867182-3867775:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3886742-3886914:-1:exon

position:3886742:-1
position: 3886742
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3883246-3883400:-1:exon

position:3883246:-1
position: 3883246
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3883400:-1
position: 3883400
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3867182-3867775:-1:exon

position:3867775:-1
position: 3867775
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC125449865
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 378071
nc RNA class: lncRNA
gene: LOC125449865
product: uncharacterized LOC125449865, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_007246965.1
SIO_010081: LOC125449865
subclass of: SO_0000673
so part of: LOC125449865
location: complement(join(3880669..3880850,3883246..3883400,3886742..3886914))
location: region:3880669-3886914:-1
so has part: feature:3886742-3886914:-1:exon
so has part: feature:3883246-3883400:-1:exon
so has part: feature:3880669-3880850:-1:exon

position:3880669:-1
position: 3880669
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3886742-3886914:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3883246-3883400:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3880669-3880850:-1:exon

position:3880850:-1
position: 3880850
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC125449885
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: LOC125449885
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4099970..4123982)
location: region:4099970-4123982:-1
so has part: feature:4099970-4123982:-1:exon
subclass of: SO_0000011

125449885
type: Gene
SIO_000068: ncbigene

position:4099970:-1
position: 4099970
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4123982:-1
position: 4123982
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4099970-4123982:-1:exon

LOC125449885
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 378071
nc RNA class: lncRNA
gene: LOC125449885
product: uncharacterized LOC125449885
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_007246989.1
SIO_010081: LOC125449885
subclass of: SO_0000673
so part of: LOC125449885
location: complement(join(4099970..4100278,4116229..4116366,4123959..4123982))
location: region:4099970-4123982:-1
so has part: feature:4123959-4123982:-1:exon
so has part: feature:4116229-4116366:-1:exon
so has part: feature:4099970-4100278:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4123959-4123982:-1:exon

position:4123959:-1
position: 4123959
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4116229-4116366:-1:exon

position:4116229:-1
position: 4116229
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4116366:-1
position: 4116366
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4099970-4100278:-1:exon

position:4100278:-1
position: 4100278
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

trnal-caa
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: trnal-caa
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 4193821..4193935
location: region:4193821-4193935:1
so has part: feature:4193821-4193935:1:exon
subclass of: SO_0000663

125449894
type: Gene
SIO_000068: ncbigene

position:4193821:1
position: 4193821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4193935:1
position: 4193935
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4193821-4193935:1:exon

trnal-caa
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 378071
gene: trnal-caa
product: tRNA-Leu
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA leucine (anticodon CAA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:4193855..4193857,aa:Leu,seq:caa)
SIO_010081: trnal-caa
subclass of: SO_0000673
so part of: trnal-caa
location: join(4193821..4193858,4193901..4193935)
location: region:4193821-4193935:1
so has part: feature:4193821-4193858:1:exon
so has part: feature:4193901-4193935:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4193821-4193858:1:exon

position:4193858:1
position: 4193858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4193901-4193935:1:exon

position:4193901:1
position: 4193901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

trnal-aag
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: trnal-aag
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(4429693..4429774)
location: region:4429693-4429774:-1
so has part: feature:4429693-4429774:-1:exon
subclass of: SO_0000663

125449920
type: Gene
SIO_000068: ncbigene

position:4429693:-1
position: 4429693
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4429774:-1
position: 4429774
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4429693-4429774:-1:exon

trnal-aag
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 378071
gene: trnal-aag
product: tRNA-Leu
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA leucine (anticodon AAG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(4429738..4429740),aa:Leu, seq:aag)
SIO_010081: trnal-aag
subclass of: SO_0000673
so part of: trnal-aag
location: complement(4429693..4429774)
location: region:4429693-4429774:-1
so has part: feature:4429693-4429774:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4429693-4429774:-1:exon

trnak-cuu
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: trnak-cuu
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(4433799..4433871)
location: region:4433799-4433871:-1
so has part: feature:4433799-4433871:-1:exon
subclass of: SO_0000663

125449921
type: Gene
SIO_000068: ncbigene

position:4433799:-1
position: 4433799
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4433871:-1
position: 4433871
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4433799-4433871:-1:exon

trnak-cuu
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 378071
gene: trnak-cuu
product: tRNA-Lys
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA lysine (anticodon CUU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(4433836..4433838),aa:Lys, seq:ctt)
SIO_010081: trnak-cuu
subclass of: SO_0000673
so part of: trnak-cuu
location: complement(4433799..4433871)
location: region:4433799-4433871:-1
so has part: feature:4433799-4433871:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4433799-4433871:-1:exon

trnas-cga
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: trnas-cga
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 4504922..4505003
location: region:4504922-4505003:1
so has part: feature:4504922-4505003:1:exon
subclass of: SO_0000663

125449895
type: Gene
SIO_000068: ncbigene

position:4504922:1
position: 4504922
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4505003:1
position: 4505003
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4504922-4505003:1:exon

trnas-cga
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 378071
gene: trnas-cga
product: tRNA-Ser
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA serine (anticodon CGA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:4504955..4504957,aa:Ser,seq:cga)
SIO_010081: trnas-cga
subclass of: SO_0000673
so part of: trnas-cga
location: 4504922..4505003
location: region:4504922-4505003:1
so has part: feature:4504922-4505003:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4504922-4505003:1:exon

trnak-cuu
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: trnak-cuu
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 4622764..4622836
location: region:4622764-4622836:1
so has part: feature:4622764-4622836:1:exon
subclass of: SO_0000663

125449896
type: Gene
SIO_000068: ncbigene

position:4622764:1
position: 4622764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4622836:1
position: 4622836
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4622764-4622836:1:exon

trnak-cuu
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 378071
gene: trnak-cuu
product: tRNA-Lys
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA lysine (anticodon CUU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:4622797..4622799,aa:Lys,seq:ctt)
SIO_010081: trnak-cuu
subclass of: SO_0000673
so part of: trnak-cuu
location: 4622764..4622836
location: region:4622764-4622836:1
so has part: feature:4622764-4622836:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4622764-4622836:1:exon

trnal-aag
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: trnal-aag
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 4626871..4626952
location: region:4626871-4626952:1
so has part: feature:4626871-4626952:1:exon
subclass of: SO_0000663

125449897
type: Gene
SIO_000068: ncbigene

position:4626871:1
position: 4626871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4626952:1
position: 4626952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4626871-4626952:1:exon

trnal-aag
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 378071
gene: trnal-aag
product: tRNA-Leu
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA leucine (anticodon AAG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:4626905..4626907,aa:Leu,seq:aag)
SIO_010081: trnal-aag
subclass of: SO_0000673
so part of: trnal-aag
location: 4626871..4626952
location: region:4626871-4626952:1
so has part: feature:4626871-4626952:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4626871-4626952:1:exon

trnal-caa
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: trnal-caa
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 5292745..5292859
location: region:5292745-5292859:1
so has part: feature:5292745-5292859:1:exon
subclass of: SO_0000663

125449898
type: Gene
SIO_000068: ncbigene

position:5292745:1
position: 5292745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5292859:1
position: 5292859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5292745-5292859:1:exon

trnal-caa
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 378071
gene: trnal-caa
product: tRNA-Leu
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA leucine (anticodon CAA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:5292779..5292781,aa:Leu,seq:caa)
SIO_010081: trnal-caa
subclass of: SO_0000673
so part of: trnal-caa
location: join(5292745..5292782,5292814..5292859)
location: region:5292745-5292859:1
so has part: feature:5292745-5292782:1:exon
so has part: feature:5292814-5292859:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5292745-5292782:1:exon

position:5292782:1
position: 5292782
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5292814-5292859:1:exon

position:5292814:1
position: 5292814
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

trnal-caa
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: trnal-caa
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 5326721..5326835
location: region:5326721-5326835:1
so has part: feature:5326721-5326835:1:exon
subclass of: SO_0000663

125449899
type: Gene
SIO_000068: ncbigene

position:5326721:1
position: 5326721
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5326835:1
position: 5326835
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5326721-5326835:1:exon

trnal-caa
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 378071
gene: trnal-caa
product: tRNA-Leu
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA leucine (anticodon CAA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:5326755..5326757,aa:Leu,seq:caa)
SIO_010081: trnal-caa
subclass of: SO_0000673
so part of: trnal-caa
location: join(5326721..5326758,5326790..5326835)
location: region:5326721-5326835:1
so has part: feature:5326721-5326758:1:exon
so has part: feature:5326790-5326835:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5326721-5326758:1:exon

position:5326758:1
position: 5326758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5326790-5326835:1:exon

position:5326790:1
position: 5326790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

trnaw-cca
type: Gene
subclass of: SO_0000704
RO_0002162: 378071
gene: trnaw-cca
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 5481543..5481614
location: region:5481543-5481614:1
so has part: feature:5481543-5481614:1:exon
subclass of: SO_0000663

125449900
type: Gene
SIO_000068: ncbigene

position:5481543:1
position: 5481543
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5481614:1
position: 5481614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5481543-5481614:1:exon

trnaw-cca
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 378071
gene: trnaw-cca
product: tRNA-Trp
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA tryptophan (anticodon CCA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:5481575..5481577,aa:Trp,seq:cca)
SIO_010081: trnaw-cca
subclass of: SO_0000673
so part of: trnaw-cca
location: 5481543..5481614
location: region:5481543-5481614:1
so has part: feature:5481543-5481614:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5481543-5481614:1:exon