Trichormus variabilis 0441 plasmid unnamed4, complete sequence.
type: Entry
definition: Trichormus variabilis 0441 plasmid unnamed4, complete sequence.
sequence version: NZ_CP047246.1
sequence date: 2023-05-22
sequence: sequence
division: CON
label: NZ_CP047246.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN13702813
keyword: RefSeq
source: Trichormus variabilis 0441
organism: Trichormus variabilis 0441
taxonomy: Bacteria; Cyanobacteriota; Cyanophyceae; Nostocales; Nostocaceae; Trichormus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP047246.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 212.0x\nSequencing Technology :: Illumina HiSeq; Oxford Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/22/2023 16:18:53\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,971\nCDSs (total) :: 5,908\nGenes (coding) :: 5,820\nCDSs (with protein) :: 5,820\nGenes (RNA) :: 63\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 4\nPseudo Genes (total) :: 88\nCDSs (without protein) :: 88\nPseudo Genes (ambiguous residues) :: 0 of 88\nPseudo Genes (frameshifted) :: 23 of 88\nPseudo Genes (incomplete) :: 72 of 88\nPseudo Genes (internal stop) :: 21 of 88\nPseudo Genes (multiple problems) :: 23 of 88\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 27054
topology: circular
so has quality: SO_0000988
location: 1..27054
location: region:1-27054:1
RO_0002162: 375899

NZ_CP047246
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN13702813
type: BioSample
SIO_000068: biosample

1
title: Complete Genome Sequence of the Cyanobacterium Trichormus variabilis 0441 from Arshan thermal spring
author: Zhenavchuk, O.F.
author: Mikheeva, L.E.
author: Belykh, O.I.
author: Penin, A.
author: Kasianov, A.S.
journal: Unpublished

2
title: Direct Submission
author: Mikheeva, L.E.
author: Zhenavchuk, O.F.
author: Penin, A.
author: Kasianov, A.S.
journal: Submitted (31-DEC-2019) Faculty of Biology, Department of Genetics, Lomonosov Moscow State Univercity, Leninskie gory, Moscow 119234, Russia

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27054:1
position: 27054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-27054:1:source
so part of: sequence
organism: Trichormus variabilis 0441
mol type: genomic DNA
strain: 0441
isolation source: thermal spring
plasmid: unnamed4
country: Russia: Arshan
collection date: 2004-09
collected by: Department of Aquatic Microbiology, Limnological Institute SB RAS

375899
type: Taxonomy
SIO_000068: taxonomy

GSQ19_RS29535
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29535
old locus tag: GSQ19_29535
so part of: sequence
location: join(25807..27054,1..762)
location: region:1-27054:1
so has part: feature:25807-27054:1:exon
so has part: feature:1-762:1:exon
subclass of: SO_0000010

58727523
type: Gene
SIO_000068: ncbigene

urn:…
SIO_000300: 1
SIO_000628: feature:25807-27054:1:exon

position:25807:1
position: 25807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-762:1:exon

position:762:1
position: 762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

GSQ19_RS29535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29535
old locus tag: GSQ19_29535
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRNWKQAIITQIVKWLTLLLPEGCQADIFAFQQQLELEQQNNTEIQLEILKVVKDAYIGLLKSIPTNLITFLEKLNPNYWTIQIYGTNYYPQALAQVETEFLKDYYNINHKSMQISGIALIIFYIILGVLDIWCLPEVKVTAWLIKLFVCFMLFLTTYLAFCPIVFNRYNQQIISFSLVTTVLGIILCMSLSRIDELGYHTYYGALLLIIFYTYLNSGLRFFNALIVSSILLFGYGVMNYVNQSTILDLHINNLRHFNNYFFLISSLIAGASASNLLERTIRLNFLIRYTISNSFLEFLNFFEFNKPEQFFENISKIRISPQILEKFLHQSFVSVPDTNFLYYKEGFLSKEKSLLKLPIKFKSEIEEAKIKSFKKYYAIMLFKKILSSTFQFVKGVFLWIQDINLIFIKKHYCSDYQKKLKKIERLFRLDYLQSSLISIRFASIYAFIFYGLFGLADIFCLPETKFVSIPIRIGVCITAMIWLLTSFFENFFKKFNQIIIVFVTLIASGGIIYMIASSRSTELGYTTYYAGLILVMFYIFLFSRLLFLNAMLVALFIVAGYGIIAVIYQNSLSSFQNTGLFINNTIFLAILCVVGSIACYLFEQNSRLDFLTRYTIAYKAQELLAYYEHTNPTPKELLDMINGIRHSPRKLQEFLTEILAFQSSKSGKN
SIO_010081: GSQ19_RS29535
subclass of: SO_0000673
so part of: GSQ19_RS29535
location: join(25807..27054,1..762)
location: region:1-27054:1
so has part: feature:25807-27054:1:exon
so has part: feature:1-762:1:exon

WP_153228488.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25807-27054:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-762:1:exon

GSQ19_RS29540
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29540
old locus tag: GSQ19_29540
so part of: sequence
location: complement(834..1724)
location: region:834-1724:-1
so has part: feature:834-1724:-1:exon
subclass of: SO_0000010

58727524
type: Gene
SIO_000068: ncbigene

position:834:-1
position: 834
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1724:-1
position: 1724
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:834-1724:-1:exon

GSQ19_RS29540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29540
old locus tag: GSQ19_29540
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007358218.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
translation: MSPVALVHTEERKQLAKLAPVDAQAKLIEMWLYGKSQRSQEAYRLYITKFLAFVAKPVPTITLEDLYDFAGHLDGLGLAPVTQKTYLSAVKSLLSFAQKIGMTPVNIGAAMSLNKTPDTLNERLLTESEVARLIGMELNLRNRGILQLLYAAGLRVSELCALKWKNLAPRGDSGQVTVLGKGNRTRSVLLPKSVWDNLMQLRGNAADSDPMFCSRKGKGHLDRKTINKIIAAAAKRAGLDAKVSPHWLRHAHATHSLERGANIGLVQQTLGHANVSTTSRYLHARPSDSSALYLPV
SIO_010081: GSQ19_RS29540
subclass of: SO_0000673
so part of: GSQ19_RS29540
location: complement(834..1724)
location: region:834-1724:-1
so has part: feature:834-1724:-1:exon

WP_016562536.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:834-1724:-1:exon

GSQ19_RS29545
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29545
old locus tag: GSQ19_29545
so part of: sequence
location: complement(2528..2812)
location: region:2528-2812:-1
so has part: feature:2528-2812:-1:exon
subclass of: SO_0000010

58727525
type: Gene
SIO_000068: ncbigene

position:2528:-1
position: 2528
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2812:-1
position: 2812
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2528-2812:-1:exon

GSQ19_RS29545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29545
old locus tag: GSQ19_29545
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016948706.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNSKPIPNSHSIIELSIAQERLRQARYSFNLALVTTALSACISIVGAGLLLSGKVPEGGVTAAGGIAASVRCVQLAKDTNDRLDKILAELDDET
SIO_010081: GSQ19_RS29545
subclass of: SO_0000673
so part of: GSQ19_RS29545
location: complement(2528..2812)
location: region:2528-2812:-1
so has part: feature:2528-2812:-1:exon

WP_016562537.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2528-2812:-1:exon

GSQ19_RS29550
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29550
old locus tag: GSQ19_29550
so part of: sequence
location: 2980..4443
location: region:2980-4443:1
so has part: feature:2980-4443:1:exon
subclass of: SO_0000010

58727526
type: Gene
SIO_000068: ncbigene

position:2980:1
position: 2980
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4443:1
position: 4443
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2980-4443:1:exon

GSQ19_RS29550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29550
old locus tag: GSQ19_29550
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008177582.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: pentapeptide repeat-containing protein
translation: MTDPSLGRKKRKITIPASLEGVEIAEKALVRLGFDSKSNFAKSQLLARTTVTKFFQCEPIQLDSFKKICKELKLNWREIAGILEKEQSEQLEINDCNSLDTNKGVEPVQTLRRQVTVIDEQSQIILVAIVLEGDINSVPNHKVLESILREYSGKTIKIIDVKKGSIKLFVEGSQEDIERLISLIDSGELTTISGFPVKDIQVLSESSNDDEITESDDKWRLVQEIISHPVKGRKLSYANLSGADLSGAYLSGAYLSGAYLSGADLSGADLSGADLSGADLSGADLSDANLSGADLSGANLSDANLSGAYLSGANLNGADLSGAYLSDAYLNGADLSGANLSGANLNGADLSGANLSGANLSGVNLIRANLSGASLSFTILSGVNLGFTILSGVNLSGADLSGVNLIRANLSGADLSGANLSGANLSGANLRDANLRDANLRDAIVVNALFGESLGLTEHLRHDLKRRGAIFGDRPPRPPRPPVFAPR
SIO_010081: GSQ19_RS29550
subclass of: SO_0000673
so part of: GSQ19_RS29550
location: 2980..4443
location: region:2980-4443:1
so has part: feature:2980-4443:1:exon

WP_153228487.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2980-4443:1:exon

GSQ19_RS29555
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29555
old locus tag: GSQ19_29555
so part of: sequence
location: 5386..8001
location: region:5386-8001:1
so has part: feature:5386-8001:1:exon
subclass of: SO_0000010

58727527
type: Gene
SIO_000068: ncbigene

position:5386:1
position: 5386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8001:1
position: 8001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5386-8001:1:exon

GSQ19_RS29555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29555
old locus tag: GSQ19_29555
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKNLNSREICVKYLDSLETKQRINDTKNALLRYFVPSVGGPAVSAAKRRPMTPEEAKAGFEFLKQISLEELANAPDWALKTLEERDVTSSQKERVRGDLRNLVDWAIEKGYLPPPHNPIPQDICDRIQLGRFEGLNLNPATSFDIFQEYFQQLQDQEAKNDVKNGIIRYFVPATGGPLLFHKPALESEVTAAFQHLKSVPLEYLNEAPSIVTPALEALNLSQTQQTRIRSVLRDFIDWARNQSYLPDPNYIAPWGGEYTPIPLAISAFPEKSKSVLDIYNSYCKYLQNQGKQKEIAALRSIVLKYLVPACGGSTLKGKKASNTEINTGISYLEQTSIEQLYNAIELVKSQFEISGVESQKRYTPRSKLKAWIDWAKSEGYFSKIEARQQPQPVFNTFYKNGVRRKRKKPGKKLHENRCPVHALCAKKFSDDYINPNLKQQIEDYKAWRLSNDVRPGAIVTEEEQLLQILGWLHRYENVPLEQLSFECLITKSPLLFWAKNYSDYQKYFFAREQGIQTARKQADQDIERVRHYLDFTGTNPNSQKKRISLIIAVGKFLYRDLIGTDDFPTAKPIPIILRLLQVQDEIGKKAQRTPQSTSYHETSVSWSEAIEAMEKQRRRADQVILYTTTTYVRRGYREYQRPETALAHELQKFLSIAFCILVPSRSRTFYELRIGETFKEGILTETKFLSVEEVKNQCKEKDLKDNIKFYIHLNEEDYKSGKSIAPVLINNGGWWVELPNINFGDKCLYDYVRRWLAWGRYARSPIEHNYFFRHAFSPKPLKTGNWGSRIRNIFNTWTGVPVPPNSVRKMFASQFPDYRGSAALLLQHSESIHETNYDMRHSLLKMQPVINANQQFIADRLAEYSQDVINN
SIO_010081: GSQ19_RS29555
subclass of: SO_0000673
so part of: GSQ19_RS29555
location: 5386..8001
location: region:5386-8001:1
so has part: feature:5386-8001:1:exon

WP_016562540.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5386-8001:1:exon

GSQ19_RS29560
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29560
old locus tag: GSQ19_29560
so part of: sequence
location: complement(8189..10660)
location: region:8189-10660:-1
so has part: feature:8189-10660:-1:exon
subclass of: SO_0000010

58727528
type: Gene
SIO_000068: ncbigene

position:8189:-1
position: 8189
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10660:-1
position: 10660
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8189-10660:-1:exon

GSQ19_RS29560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29560
old locus tag: GSQ19_29560
inference: COORDINATES: protein motif:HMM:NF020289.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNIKKFIQQFGGTLPSKQENTENHLLHPPNLNNSDNSDKPKLTFLQRALNFLYGDKPWICVNNTLYYWTGTHYQQSSESDERRKITDFCNSYTVERKKDGVTFPYAKPACVNEVLRWAKYCCEVNSELINPPGLNCTNGVLQIEWKGSIPQWKLINHTPNLYYIYKPIVTYNPNADHTNCDRLLKALDKPEQEIFLRTIAASLDLATVRQHKGRLVRALLLKGDGSNGKDTLREIVAAMYGYQGVTGLTLSDFYKYDHGTKSALAELINSRVNWASENFNETSIDKLQSLKAFITGNNLTSKRGRDGIDYKPSAICLFNINDTPNLKAISESITSRWAILDFSKIFKAAADSSKGELQADPRFQNDTEFIQNEVLPAFLNRVLQALGDLMRDGIDYSCTQKTLENIQKDNSHLLQFCEDVGLAYEPNGTVTAHEIWDLLEQWYQDNDILIYEIDKNGQRKAIWSQQPTNSDKNVKAPNQVIARFKRLFPKVEEINISKPGGGKSWKGLKGIGFKQSTLPQASPDITPSDTPITPNTSPEDSLQGNGFHPIHPNPLITEEEGKKWGSSLNYLPEQQESKEPDTSIIPLSSEEKSKKIASSEIYSTKLLLPSKVEDSDLDEIDKKAEAVKPERQIIIRKFDSSSPRLCLFFEESEELLINVILPLSPEIKIGSRVQVLRPFLKSICGIVDNIYYDKFGIRKAWVSIDYENPLNKEYECCIDESVLMQVKFSNLDDVGLLLLDDVVLFQYIFSGNIPQKDIKYFLGIYKIFLVALLMNCRYFLSLKMINIKKKNTDLIDFDEITIPKVMLQFADKMQKMNNTDIEY
SIO_010081: GSQ19_RS29560
subclass of: SO_0000673
so part of: GSQ19_RS29560
location: complement(8189..10660)
location: region:8189-10660:-1
so has part: feature:8189-10660:-1:exon

WP_153228486.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8189-10660:-1:exon

GSQ19_RS29565
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29565
old locus tag: GSQ19_29565
so part of: sequence
location: complement(10829..12925)
location: region:10829-12925:-1
so has part: feature:10829-12925:-1:exon
subclass of: SO_0000010

58727529
type: Gene
SIO_000068: ncbigene

position:10829:-1
position: 10829
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12925:-1
position: 12925
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10829-12925:-1:exon

GSQ19_RS29565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29565
old locus tag: GSQ19_29565
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012412868.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication-related protein
translation: MVQAKNTAAQPTLLPSDPLGQRFLKHFHHGWGFIYAPTPNTGERPNWRTETRHPLEPRNLWQQYLNPNILIGLRFDKETNYLLLDVDQLSSLHPTSDELKYRQVLDCMEEIGLCRPVPIQSSERGGLHIYYFLEDDQHSYSLARTVQYALEAAGFKIRGGELEIFPNCKAYSKGKPSNFNAHRLPLQAGSYLLDDSLEPWSNNIEDLLNTADWSAAGQDYETLAAAIAQAKSKKVIKFPYGQGSKAKQWQHELTERITEGWTGPGQTNELLKNMGCLGVVFRHLSGKELVDYIVTTSRNSPGYEKWCGHQHEIEQRAREWAQSCERYYTPYASYPQRVNSYKEQFGTVDENKVIELHPNQQRQQETLERIRSIVAHLQQTLTFPERTSDRVESIIAASKAQYGKGISQTTLYKQLYLPLWHPDHQNLKEEQPVNLCSKSNIAIFNPGQYPQIPDPWLEEIVAETDSTQVKQEQALENYTPPPYMKVLYMTSALALPPATPNADLDQMQKSFSTTNSSKFLNVITDKQNQCLSSQSGLLNENKQSLFNNEILAKSITSSVIQPVDIKIDSKHIITLKNECFSVTEPSVPNSKLEDTNQIAIKQDVPLQDEILNSEDYRQIIRLRLQANTQARYWVKMYCMTEKLSLLPLERIKLEQMIQRLLMLKCSSLILQQEAQEWLEANQSLLEMAYQIGVDLNSV
SIO_010081: GSQ19_RS29565
subclass of: SO_0000673
so part of: GSQ19_RS29565
location: complement(10829..12925)
location: region:10829-12925:-1
so has part: feature:10829-12925:-1:exon

WP_016562542.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10829-12925:-1:exon

GSQ19_RS29570
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29570
old locus tag: GSQ19_29570
so part of: sequence
location: complement(14078..14377)
location: region:14078-14377:-1
so has part: feature:14078-14377:-1:exon
subclass of: SO_0000010

58727530
type: Gene
SIO_000068: ncbigene

position:14078:-1
position: 14078
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14377:-1
position: 14377
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14078-14377:-1:exon

GSQ19_RS29570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29570
old locus tag: GSQ19_29570
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017741147.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MMTQSITQQTIASTPEEGADVTQSFLSGANHPAINQADSQATLEREPIKHTLIGSSKAVTATIRSLHQLRYAEVGDWSPLLPTGNTGEVMSILVRSILV
SIO_010081: GSQ19_RS29570
subclass of: SO_0000673
so part of: GSQ19_RS29570
location: complement(14078..14377)
location: region:14078-14377:-1
so has part: feature:14078-14377:-1:exon

WP_016562543.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14078-14377:-1:exon

GSQ19_RS30405
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS30405
so part of: sequence
location: complement(14694..14819)
location: region:14694-14819:-1
so has part: feature:14694-14819:-1:exon
subclass of: SO_0000010

77058233
type: Gene
SIO_000068: ncbigene

position:14694:-1
position: 14694
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14819:-1
position: 14819
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14694-14819:-1:exon

GSQ19_RS30405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS30405
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLYSKVESDRTQRQPEKRSPITPFIGRLDGGKVAKLLSAAT
SIO_010081: GSQ19_RS30405
subclass of: SO_0000673
so part of: GSQ19_RS30405
location: complement(14694..14819)
location: region:14694-14819:-1
so has part: feature:14694-14819:-1:exon

WP_255449101.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14694-14819:-1:exon

GSQ19_RS29575
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29575
old locus tag: GSQ19_29575
so part of: sequence
location: 14873..15070
location: region:14873-15070:1
so has part: feature:14873-15070:1:exon
subclass of: SO_0000010

58727531
type: Gene
SIO_000068: ncbigene

position:14873:1
position: 14873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15070:1
position: 15070
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14873-15070:1:exon

GSQ19_RS29575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29575
old locus tag: GSQ19_29575
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: plasmid partition protein ParG
translation: MPCQNDGMAKPEDTVKLIIGKELKIRFKSLCVQAETDMSSVAKELIAAWCDEQERKIASGQPKKL
SIO_010081: GSQ19_RS29575
subclass of: SO_0000673
so part of: GSQ19_RS29575
location: 14873..15070
location: region:14873-15070:1
so has part: feature:14873-15070:1:exon

WP_016562544.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14873-15070:1:exon

GSQ19_RS29580
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29580
old locus tag: GSQ19_29580
so part of: sequence
location: 15067..15321
location: region:15067-15321:1
so has part: feature:15067-15321:1:exon
subclass of: SO_0000010

58727532
type: Gene
SIO_000068: ncbigene

position:15067:1
position: 15067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15321:1
position: 15321
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15067-15321:1:exon

GSQ19_RS29580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29580
old locus tag: GSQ19_29580
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTGQDSEKGKGFLSFTFSLSSAYSCQYLRRELLAKEVFSRSMADSVTLATLGFSRDTDTVGECNTYLYLKVLFKLKPSICRCIF
SIO_010081: GSQ19_RS29580
subclass of: SO_0000673
so part of: GSQ19_RS29580
location: 15067..15321
location: region:15067-15321:1
so has part: feature:15067-15321:1:exon

WP_159368362.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15067-15321:1:exon

GSQ19_RS29585
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29585
old locus tag: GSQ19_29585
so part of: sequence
location: 16055..18808
location: region:16055-18808:1
so has part: feature:16055-18808:1:exon
subclass of: SO_0000010

58727533
type: Gene
SIO_000068: ncbigene

position:16055:1
position: 16055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18808:1
position: 18808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16055-18808:1:exon

GSQ19_RS29585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29585
old locus tag: GSQ19_29585
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005986698.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO process: GO:0006306 - DNA methylation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: N-6 DNA methylase
translation: MHPKSVDFVKECPLNTKEIIDRIFKDPGTKYELTEFESLGKPIHEILSIYPKTAATGRDAGKTKYYLKSFIPFSSGNEEVQVFVEDGKSAPEEIVRQLWVYNLIHQYGYKDDEIALEVSVQFGTEVGTKAADVIVYTDNSKETPKIIVECKKPKRKDGIEQLKSYMNAKGAPVAVWSNGSDNIILYRPYPKDYDTLSDIPKRGQEPKDVLETKKTIYQLKQDFNFKKIIQDLEELVLADSGKDEFNEIFKLIFAKIWDEKEALQNRQGGTVEFAKAVDSDITYDRINGLFKRACEEWSGIFRDHEDIELAKRHLQVCIGPIEGLRLMGSNLRIMDDAFEYLLPTEAKKKKGQFFTPRHVVEMCVRMLNPTQKEYVMDPACGSGGFLLHAMDWCYPANDNEKRELRKHRYAAKYLWGIDFESRAAKTSRALMLIAGDGHTNIFGPDVSSLDPKTWYESASGQSLMHGLRQAKLTAVKIPENETLKDDDKAWEYFEGLKFDVILANPPFAGEIKDRKMLVHYDLAKPSLKRAGDDKAPKEERDVLFIERILKMLRPGGRAAIVLPQGKFNNSSLAFIREWILKKARLLAVVGLHPNTFKPHTGTKTSVLFVQKYTEQQLADIARVHDEVAKDCPAYEAEIQSLLDDESEVSEEAIPEAVADLISEIFSEPEAEDITEENGEDEAGDNEMVELPSDEERLVQAEEKVDNLKAELSRVQQQLADFDIDVEVLKQQQQAEIDNITNTFDGTKRELSTYLKPIKAAHKEAMKEFKVAHKQKIKQYNVEIKRLEKEIPNAERDLKLLTNRGKLELILADNDLIATLKEHWIVAEVAKRLDYPIFMAVSERGGKNNSGDYEYMLEDGHLVEDISGQPKINQDLVNYDFTAADLADATSIPDDQLCIAEAFVRFAQEQEFAFWRAK
SIO_010081: GSQ19_RS29585
subclass of: SO_0000673
so part of: GSQ19_RS29585
location: 16055..18808
location: region:16055-18808:1
so has part: feature:16055-18808:1:exon

WP_016562527.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16055-18808:1:exon

GSQ19_RS29590
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29590
old locus tag: GSQ19_29590
so part of: sequence
location: 19246..20193
location: region:19246-20193:1
so has part: feature:19246-20193:1:exon
subclass of: SO_0000010

58727534
type: Gene
SIO_000068: ncbigene

position:19246:1
position: 19246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20193:1
position: 20193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19246-20193:1:exon

GSQ19_RS29590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29590
old locus tag: GSQ19_29590
EC number: 3.1.21.-
inference: COORDINATES: protein motif:HMM:NF013579.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006304 - DNA modification [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: restriction endonuclease subunit S
translation: MSTFLNSKYGRFQSLREAAGNVQLNLYVRNIGNIVVPRFGQLEREISDLTKKAYCLRESSKEVYIQAQQSLESELGLDKLHFDKPVSYTAQFSDLEMSHRNDAQHYQPRFTQLLEHLEKFPTKRVREVCRYNRRGIQPIYSDNGTHAVVNSQHLGEKHINYDGLQKTTERAFNASPEAHIQQDDLLIYTTGAYIGRTNVYLDDIPAFASNHVNILRLSPQIDHAYMAMVFQSIVGQFQTQKYARGSAQAELYPTDINKFVVPLLQPEKQTEIGNLVRESLVKKRESSQLLDQAKSRVEQLIEEAVGNCSGTHPGL
SIO_010081: GSQ19_RS29590
subclass of: SO_0000673
so part of: GSQ19_RS29590
location: 19246..20193
location: region:19246-20193:1
so has part: feature:19246-20193:1:exon

WP_159368363.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19246-20193:1:exon

GSQ19_RS29595
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29595
old locus tag: GSQ19_29595
so part of: sequence
location: 20962..21714
location: region:20962-21714:1
so has part: feature:20962-21714:1:exon
subclass of: SO_0000010

58727535
type: Gene
SIO_000068: ncbigene

position:20962:1
position: 20962
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21714:1
position: 21714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20962-21714:1:exon

GSQ19_RS29595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29595
old locus tag: GSQ19_29595
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015195721.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MSRVFAVFNQAGGVGKTTLTMNLGYQLQLHNYKVLLIDIDPQASLTSFMGIEPESLEKTPFDALINEEPLFILKNQHGMDIAPTNINLSVAEIQLVNMDFREVRLKEALEPIRHEYDFILIDCPPSLGLLSYSSLVAASHLLIPIETHYKAFQGTNLLLQTIAQVKKRGNRNLKIAGFVPSRYAASNSQDQRTLKAISEQFSDIALVLDPIPRATAFVDASEQQVPLAIYEPKHPVLKVLDNIAKKMEQL
SIO_010081: GSQ19_RS29595
subclass of: SO_0000673
so part of: GSQ19_RS29595
location: 20962..21714
location: region:20962-21714:1
so has part: feature:20962-21714:1:exon

WP_153228490.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20962-21714:1:exon

GSQ19_RS29600
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29600
old locus tag: GSQ19_29600
so part of: sequence
location: 21714..22664
location: region:21714-22664:1
so has part: feature:21714-22664:1:exon
subclass of: SO_0000010

58727536
type: Gene
SIO_000068: ncbigene

position:22664:1
position: 22664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21714-22664:1:exon

GSQ19_RS29600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29600
old locus tag: GSQ19_29600
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015186391.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParB/RepB/Spo0J family partition protein
translation: MVRSRKTEQPYKAKANIDVLMGEEQPSIEPLLLPIDSISLPEGQPRRYFDSVKMEQLIQSIKTHGILENLLVRPLPDQENQYELVAGERRYRAAIASGLKEVPVTIRELTPEQALQLALVENLLREDLNPVEETEGILQLLSIRLNMPVAEVPNLLYRMQHEAKGKVAQNVLGNQQGQAIITVFEELGKLSWESFVSSRLPLLKLPAEVLEALRAGKIAYTKAQLIARVKDKEHRQSLLEEAIAADLSLNEIKERVKALQPPTDTETPQATIQAVTRRINQSKVWENPKKWKQVQTLLKKLEALIAEENATDQTNS
SIO_010081: GSQ19_RS29600
subclass of: SO_0000673
so part of: GSQ19_RS29600
location: 21714..22664
location: region:21714-22664:1
so has part: feature:21714-22664:1:exon

WP_016562530.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21714-22664:1:exon

GSQ19_RS29605
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29605
old locus tag: GSQ19_29605
so part of: sequence
location: complement(23011..23934)
location: region:23011-23934:-1
so has part: feature:23011-23934:-1:exon
subclass of: SO_0000010

58727537
type: Gene
SIO_000068: ncbigene

position:23011:-1
position: 23011
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23934:-1
position: 23934
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23011-23934:-1:exon

GSQ19_RS29605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29605
old locus tag: GSQ19_29605
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: NHL repeat-containing protein
translation: MNAQLKCLQSAYYYQEPSQSTKGRYRIIEVQPHATGLRLPSHMAVMENGTVLVGEFAGGVVRDVTEAGDYSHVDKGTFFKGMQHPGGIHQLSNGRVIAADSGTGRIYDISKGGTASESNLIFTGVPHPYGIIEYQGGIYTTFSNNSMAGIAKIQEGEKYVREKHTYVTGFPVVLTLEPYRTLVGCGGSWTGSGFGNRLLFSHSALGAVFDVTNGGVYEELRDNLYAWGLDRPLGMTTDPIDGHVYICERGAGVIKRIHPNGGYSRFAEPLLAGFRDCSCIRFTKDGKFAYICDRAVGTVYRAELLYY
SIO_010081: GSQ19_RS29605
subclass of: SO_0000673
so part of: GSQ19_RS29605
location: complement(23011..23934)
location: region:23011-23934:-1
so has part: feature:23011-23934:-1:exon

WP_016562531.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23011-23934:-1:exon

GSQ19_RS29610
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29610
old locus tag: GSQ19_29610
so part of: sequence
location: complement(24540..24905)
location: region:24540-24905:-1
so has part: feature:24540-24905:-1:exon
subclass of: SO_0000010

58727538
type: Gene
SIO_000068: ncbigene

position:24540:-1
position: 24540
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24905:-1
position: 24905
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24540-24905:-1:exon

GSQ19_RS29610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29610
old locus tag: GSQ19_29610
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNPKDAAAVGGVSTTGGIAMTGAGAKLVVDAAAIGVGVSNAVAAGLGTSTVAAGLGTSTVAAGLGTSTVAAGTATGIAATLGSTAQVMASVGGVALGATGVPLALAGAGVLGYGIYKLVRG
SIO_010081: GSQ19_RS29610
subclass of: SO_0000673
so part of: GSQ19_RS29610
location: complement(24540..24905)
location: region:24540-24905:-1
so has part: feature:24540-24905:-1:exon

WP_153228489.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24540-24905:-1:exon

GSQ19_RS29615
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29615
old locus tag: GSQ19_29615
so part of: sequence
location: complement(24905..25114)
location: region:24905-25114:-1
so has part: feature:24905-25114:-1:exon
subclass of: SO_0000010

58727539
type: Gene
SIO_000068: ncbigene

position:25114:-1
position: 25114
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24905-25114:-1:exon

GSQ19_RS29615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29615
old locus tag: GSQ19_29615
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPLSHLREAGISATLSAVLVLTGITFVSAKIALFPLPVVVAGLSTIIVGFAFGIRAAYFTFLYYQNGGF
SIO_010081: GSQ19_RS29615
subclass of: SO_0000673
so part of: GSQ19_RS29615
location: complement(24905..25114)
location: region:24905-25114:-1
so has part: feature:24905-25114:-1:exon

WP_016562532.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24905-25114:-1:exon

GSQ19_RS29620
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29620
old locus tag: GSQ19_29620
so part of: sequence
location: 25341..25745
location: region:25341-25745:1
so has part: feature:25341-25745:1:exon
subclass of: SO_0000010

58727540
type: Gene
SIO_000068: ncbigene

position:25341:1
position: 25341
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25745:1
position: 25745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25341-25745:1:exon

GSQ19_RS29620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29620
old locus tag: GSQ19_29620
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015364289.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PadR family transcriptional regulator
translation: MSKKTKEQALVISALEEDLLTLLYQRSLYGLEFVNAIKEASRGTRELGLGSLYPTLARLEKNKLVTWRWGDEQTGPRRKYYDITPFGRATLENTWRFRKALLECSVEAESETFEHENQSVVGETKSLMSKFSKE
SIO_010081: GSQ19_RS29620
subclass of: SO_0000673
so part of: GSQ19_RS29620
location: 25341..25745
location: region:25341-25745:1
so has part: feature:25341-25745:1:exon

WP_016562533.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25341-25745:1:exon