Trichormus variabilis 0441 plasmid unnamed4, complete sequence.
Bacteria; Cyanobacteriota; Cyanophyceae; Nostocales; Nostocaceae; Trichormus.
Complete Genome Sequence of the Cyanobacterium Trichormus variabilis 0441 from Arshan thermal spring
Submitted (31-DEC-2019) Faculty of Biology, Department of Genetics, Lomonosov Moscow State Univercity, Leninskie gory, Moscow 119234, Russia
REFSEQ INFORMATION: The reference sequence is identical to\nCP047246.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 212.0x\nSequencing Technology :: Illumina HiSeq; Oxford Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/22/2023 16:18:53\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,971\nCDSs (total) :: 5,908\nGenes (coding) :: 5,820\nCDSs (with protein) :: 5,820\nGenes (RNA) :: 63\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 4\nPseudo Genes (total) :: 88\nCDSs (without protein) :: 88\nPseudo Genes (ambiguous residues) :: 0 of 88\nPseudo Genes (frameshifted) :: 23 of 88\nPseudo Genes (incomplete) :: 72 of 88\nPseudo Genes (internal stop) :: 21 of 88\nPseudo Genes (multiple problems) :: 23 of 88\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Department of Aquatic Microbiology, Limnological Institute SB RAS
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007358218.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016948706.1
COORDINATES: similar to AA sequence:RefSeq:WP_008177582.1
COORDINATES: protein motif:HMM:NF020289.2
COORDINATES: similar to AA sequence:RefSeq:WP_012412868.1
COORDINATES: similar to AA sequence:RefSeq:WP_017741147.1
COORDINATES: similar to AA sequence:RefSeq:WP_005986698.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013579.2
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015195721.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186391.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_015364289.1