Trichormus variabilis 0441 plasmid unnamed3, complete sequence.
type: Entry
definition: Trichormus variabilis 0441 plasmid unnamed3, complete sequence.
sequence version: NZ_CP047245.1
sequence date: 2023-05-22
sequence: sequence
division: CON
label: NZ_CP047245.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN13702813
keyword: RefSeq
source: Trichormus variabilis 0441
organism: Trichormus variabilis 0441
taxonomy: Bacteria; Cyanobacteriota; Cyanophyceae; Nostocales; Nostocaceae; Trichormus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP047245.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 212.0x\nSequencing Technology :: Illumina HiSeq; Oxford Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/22/2023 16:18:53\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,971\nCDSs (total) :: 5,908\nGenes (coding) :: 5,820\nCDSs (with protein) :: 5,820\nGenes (RNA) :: 63\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 4\nPseudo Genes (total) :: 88\nCDSs (without protein) :: 88\nPseudo Genes (ambiguous residues) :: 0 of 88\nPseudo Genes (frameshifted) :: 23 of 88\nPseudo Genes (incomplete) :: 72 of 88\nPseudo Genes (internal stop) :: 21 of 88\nPseudo Genes (multiple problems) :: 23 of 88\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 35762
topology: circular
so has quality: SO_0000988
location: 1..35762
location: region:1-35762:1
RO_0002162: 375899

NZ_CP047245
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN13702813
type: BioSample
SIO_000068: biosample

1
title: Complete Genome Sequence of the Cyanobacterium Trichormus variabilis 0441 from Arshan thermal spring
author: Zhenavchuk, O.F.
author: Mikheeva, L.E.
author: Belykh, O.I.
author: Penin, A.
author: Kasianov, A.S.
journal: Unpublished

2
title: Direct Submission
author: Mikheeva, L.E.
author: Zhenavchuk, O.F.
author: Penin, A.
author: Kasianov, A.S.
journal: Submitted (31-DEC-2019) Faculty of Biology, Department of Genetics, Lomonosov Moscow State Univercity, Leninskie gory, Moscow 119234, Russia

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35762:1
position: 35762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-35762:1:source
so part of: sequence
organism: Trichormus variabilis 0441
mol type: genomic DNA
strain: 0441
isolation source: thermal spring
plasmid: unnamed3
country: Russia: Arshan
collection date: 2004-09
collected by: Department of Aquatic Microbiology, Limnological Institute SB RAS

375899
type: Taxonomy
SIO_000068: taxonomy

GSQ19_RS29370
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29370
old locus tag: GSQ19_29370
so part of: sequence
location: join(35069..35762,1..749)
location: region:1-35762:1
so has part: feature:35069-35762:1:exon
so has part: feature:1-749:1:exon
subclass of: SO_0000010

58727490
type: Gene
SIO_000068: ncbigene

urn:…
SIO_000300: 1
SIO_000628: feature:35069-35762:1:exon

position:35069:1
position: 35069
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-749:1:exon

position:749:1
position: 749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

GSQ19_RS29370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29370
old locus tag: GSQ19_29370
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: serine hydrolase
translation: MPKIYRKIKRSIKLDRVAILVALVISPIILVIILALNIFNKKEITASNKCHRELTIDLVSGNFTTVKNTVNKNQLICYYFNVLNNDKIVLFSKNKVIFRTPDNHQNIVQGSSNLNLSSAGIYSIVITTEQETEDYLFTLKLENNQILKKTQLKIVDKFSYKQENTNQESTNEALQPTYNVVTPPSFKPNSKLQSIVNDVVSLVASKGLPIDRLSVSLINLKNSDCCAYAQYLDQELRFPASVAKLFWMVYLYGQYETKRLPEGAVPYKNLAKMIQDSDNESASLIVDTISQTKSGESLPPDEIEQWVQKRLAMNSFFEKANYQQINISQKLFPTDYQKNDAPAGRDLQIRGSNESNPFRNYTTTYNVARLLLEIDQGKAISEKYSSSMKLLLKRSLRRRVWKKQEFNAIEGFLGESLPENAYFASKMGWNFNTRNDAAVIGSPDGKHKYILVIFGDDPSFYKDKKLFPELSRLVYERMTN
SIO_010081: GSQ19_RS29370
subclass of: SO_0000673
so part of: GSQ19_RS29370
location: join(35069..35762,1..749)
location: region:1-35762:1
so has part: feature:35069-35762:1:exon
so has part: feature:1-749:1:exon

WP_011316642.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:35069-35762:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-749:1:exon

GSQ19_RS29375
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29375
old locus tag: GSQ19_29375
so part of: sequence
location: 794..2572
location: region:794-2572:1
so has part: feature:794-2572:1:exon
subclass of: SO_0000010

58727491
type: Gene
SIO_000068: ncbigene

position:794:1
position: 794
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2572:1
position: 2572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:794-2572:1:exon

GSQ19_RS29375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29375
old locus tag: GSQ19_29375
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015081265.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: VWA domain-containing protein
translation: MQNLFRYLRTNKPLLFGIYGAIGCLIAAILLGEPLLALTKLAPSSQQTPQAIVLLIDASSSMSDGKLTEVKTAATKFVERRNLTQDKLAVVSFGLDIQTATPLTDNADTLESAIASLSEAGGTPMAQGLDAAIGELQATFLSRNILLFTDGVPDSQALASLSAQSARSQRINLIAVATGDADTNYLAQLTADPSLVFYANSGQFDQAFRNAEAAIYKQLVESEATGDYGVIYSALRTGGWTAFLAMGIALALIMGQNHYMHRRLFTFNQGSVSTIGSLAAGMVAGATGQLLFLPLTNGIPYIALVQSVLNWSVFGALFTGFLSLFIRRLQKLQLSSVLLTGAIGGALAAGAWLMSAAYVGDMLARFMAAIIFSICIRLLSGSTVLSLVALIAIATFGQLVFLSIPGFSILDTIGRIIGWAILGLLVGGGTRFFVPNLKLDKALFGGSIGGTLGAIGFLVAAGVFGDIPGRLSGAAILGFFIGLMIAWVEQEQLNHEPYLLVHWTSTEKTSLLLGAKPVLIGSSIDAQIPLNASEGFTPITAKIYQEGANIVMQFDPEYAGRKNMKQTLQELNVGDTRKLGNITIEVKAATNQ
SIO_010081: GSQ19_RS29375
subclass of: SO_0000673
so part of: GSQ19_RS29375
location: 794..2572
location: region:794-2572:1
so has part: feature:794-2572:1:exon

WP_011316641.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:794-2572:1:exon

GSQ19_RS29380
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29380
old locus tag: GSQ19_29380
so part of: sequence
location: 2644..3027
location: region:2644-3027:1
so has part: feature:2644-3027:1:exon
subclass of: SO_0000010

58727492
type: Gene
SIO_000068: ncbigene

position:2644:1
position: 2644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3027:1
position: 3027
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2644-3027:1:exon

GSQ19_RS29380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29380
old locus tag: GSQ19_29380
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006196519.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVKYRFSLKVKGEDSEYSYFLDLTPNQENMPQQVFSSQIREDIRLNLQNQTLCAIKDFHLNQIINTWIQDIKEGYRDSTLTLQLPLLIEAGIAQINEQGNQENPHVVNPDLSNIEPVWGMLPPLNFS
SIO_010081: GSQ19_RS29380
subclass of: SO_0000673
so part of: GSQ19_RS29380
location: 2644..3027
location: region:2644-3027:1
so has part: feature:2644-3027:1:exon

WP_011316640.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2644-3027:1:exon

GSQ19_RS29385
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29385
old locus tag: GSQ19_29385
so part of: sequence
location: 3085..4479
location: region:3085-4479:1
so has part: feature:3085-4479:1:exon
subclass of: SO_0000010

58727493
type: Gene
SIO_000068: ncbigene

position:3085:1
position: 3085
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4479:1
position: 4479
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3085-4479:1:exon

GSQ19_RS29385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29385
old locus tag: GSQ19_29385
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006196518.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: VWA domain-containing protein
translation: MSNVLNVSITPHREFMPAETEGQKLFLMLKLRPTKEVAVSRPPTTFAFVIDTSGSMYEIVTGETTPTGVTYTQDAKEYSQVTGGKSKIDIVIESLLALVRSGRLEASDRVAIVQFDDTASQIIDLTPATQVSQLENAIAQLRSFSGGTRMGLGLRRALDMLSGQDMAVRRTLLFTDGQTFDEDICRALASDFATKNIPITALGVGEDFKEDLLSHLSDSTGGTLFYVVPGNAVGTQVSILDLPNRIIADYIQAQKEVITNLALTVKTVKGVELNRIVRAYPTQAEFSLTQESYPIGNAAAGDETIFILEFRMNSRPASRVRIAQLGLTYDIPGQNRRGELPPQNLVVQFVAGQGGATQVDQEVMDYVQQCNISNLVNQATKIADRDPQKAEELLETARRMTVRIGNKEMEESLNGAQQELRKTRQISAGTRKTVKMGAKGKTVKIGSDINDELSEEEMRKLTGT
SIO_010081: GSQ19_RS29385
subclass of: SO_0000673
so part of: GSQ19_RS29385
location: 3085..4479
location: region:3085-4479:1
so has part: feature:3085-4479:1:exon

WP_011316639.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3085-4479:1:exon

GSQ19_RS29390
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29390
old locus tag: GSQ19_29390
so part of: sequence
location: 4618..5181
location: region:4618-5181:1
so has part: feature:4618-5181:1:exon
subclass of: SO_0000010

58727494
type: Gene
SIO_000068: ncbigene

position:4618:1
position: 4618
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5181:1
position: 5181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4618-5181:1:exon

GSQ19_RS29390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29390
old locus tag: GSQ19_29390
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006278063.1
GO function: GO:0005515 - protein binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: FHA domain-containing protein
translation: MITCTACGYDKNPDDAEYCDACGSELQTVAAPTSTSSVAPTVLQSPIIEQEIPAPQIPQPTYPTSTPTSPTFSTTATTAKLISKQPGSPIAEFSLDSNAVVGIFDPDMGPVDIDLEEFPGGNTVSRNHAEIYIEGGVWKIKDLGSTNGVFIKQSSQTRFGARITVPETINFGDEIAFGKVRFLFQST
SIO_010081: GSQ19_RS29390
subclass of: SO_0000673
so part of: GSQ19_RS29390
location: 4618..5181
location: region:4618-5181:1
so has part: feature:4618-5181:1:exon

WP_011316638.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4618-5181:1:exon

GSQ19_RS29395
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29395
old locus tag: GSQ19_29395
so part of: sequence
location: 5275..7128
location: region:5275-7128:1
so has part: feature:5275-7128:1:exon
subclass of: SO_0000010

58727495
type: Gene
SIO_000068: ncbigene

position:5275:1
position: 5275
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7128:1
position: 7128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5275-7128:1:exon

GSQ19_RS29395
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29395
old locus tag: GSQ19_29395
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006196516.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: protein phosphatase 2C domain-containing protein
translation: MTSPSTDASSSLVIQENQSFQIDNFQVEVLSYLGQFTSDVYSFKVKICSIDSNSTQSKLGLLRVGSDRGGLHREIQLREALADYKMIAELITHITAESVIINPLSPILDIENQENKQDEIKNKTEDTENTTNSENLILHENVTDGNETKSAIDEDASYLSSLLEVDSEYLEDEYYPQIEICSADSGSKLILLSDFPENTTTLDTWLKSEYSLEEYLYITSQICQFFRYVCERNWCFISLEPRMIQTGTPSRFFDLTNAYPVGEILTSGLLGNYCASELAYNNNPIHESMSSYTVGALLYHSIHKQPLSPHQSIDLKISPIPRIYQILKICLSSIPEERFPLSQLLTILVETRQAIRAPKIKWNVASRSTVGLSTSRLQNEDNYGVRQQQLSDIETMILGVVADGMGGMSQGEVASKLSVQTVLDEPIPPEFKTVGQRNEWLMSLFQKANDVVSKNVKNGGTTLSVVLAIAQQLMVAHVGDSRIYLLRQGEIRQLSEDHSLVAMLVASGQITEAESLQHPDRNVLTKSLGSKSKLSDGYVQDLKRTTQELSMTLENADILLLCSDGVWDLVAKNEFVEIFNNNKDLQAAVDTTIEQVIERGASDNATLLAMQYQMEKS
SIO_010081: GSQ19_RS29395
subclass of: SO_0000673
so part of: GSQ19_RS29395
location: 5275..7128
location: region:5275-7128:1
so has part: feature:5275-7128:1:exon

WP_011316637.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5275-7128:1:exon

GSQ19_RS29400
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29400
old locus tag: GSQ19_29400
so part of: sequence
location: 7224..8153
location: region:7224-8153:1
so has part: feature:7224-8153:1:exon
subclass of: SO_0000010

58727496
type: Gene
SIO_000068: ncbigene

position:7224:1
position: 7224
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8153:1
position: 8153
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7224-8153:1:exon

GSQ19_RS29400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29400
old locus tag: GSQ19_29400
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTHNENKNPFFQLITVKGWKVIKQLGLLIIICGSLYVLDNYYLKQNCEGQKTSLKCSLSPLVGDLGGNILQIAILIWFFEIGLRQESIKDMQEIFISTQPTKHIKGFYSKRADYKRLIEDSFDTANSSQEIKILCLSEEEVNFFTQQNLIIIRNKVIAGCQLKFLILHPQSCLLDCLDRVKFAEKATHKSLLEGLSGKLNQLVNMLEIYRATNQPIKGSIEVRFHKDLFSPIGYYSDSRNYRIVWMYFSDPNNGNEYPAFHISNKDLIDDAERHFDTLWQGSEKDILKVTQNNTNNKIKQIFQEISENK
SIO_010081: GSQ19_RS29400
subclass of: SO_0000673
so part of: GSQ19_RS29400
location: 7224..8153
location: region:7224-8153:1
so has part: feature:7224-8153:1:exon

WP_041457375.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7224-8153:1:exon

GSQ19_RS29405
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29405
old locus tag: GSQ19_29405
so part of: sequence
location: 8174..10297
location: region:8174-10297:1
so has part: feature:8174-10297:1:exon
subclass of: SO_0000010

58727497
type: Gene
SIO_000068: ncbigene

position:8174:1
position: 8174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10297:1
position: 10297
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8174-10297:1:exon

GSQ19_RS29405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29405
old locus tag: GSQ19_29405
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015081259.1
GO function: GO:0004672 - protein kinase activity [Evidence IEA]
GO process: GO:0006468 - protein phosphorylation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: protein kinase
translation: MSIQCPTCLTDNTDDAINCIACGTPLVYTSNSSASSALDLAAGTLLGQGRYQIEKVLGRGGFGITYQGIFLQNSAYIAIKELWPEGAARQKNTVLWPSSLPPIQKQQQLKKFQLEASYLHQCIHPNIVRIYEWFEENNTAYLVMELLSGRSLQDILEKEGPLPEDKVKYYLLQIAESLKVIHANRLLHRDIKPDNIIVDSQDRAVLIDFGAAREFMAGQTGDMTRILTPGYAPYEQYIQSGKRYPATDFYALCASMYELLTGQLPAEATERANTLLQGSTSTPLIPPRQLRPNLSPLIEKVILTGMQFRVEDRFQTADELIDALNGKFISPSHKRAQELVKQGKLAEAVLAYEKYLNSEPNNGEAAVELAIIQLHLDETQAEIAAKKAMQLKPNDGRSYGVLGLVNCRKSNWSEALKNLEQAANLAPQEVWIQANLAWALGKSGNWQQAENTVNKALQLDANCTFALGLQAWIAVNQEQWKSGIRTASQAIFKSKQSSYTNSQELQRWVYPYLIFALDKAVVTKQASDVERRIQEFITQVPDNSFGWGFKGWKAAVKCLWTDAISDFEQASRKSKVSSWILINQGIAQEYLHNFQAAIQAYETHTQQFSPHAFVLFRLGTLYGRLGQWEKARSYLEKAVHEKSNYAEAYHNLGWVLLNIKDQDGQVENFREILSSYRKAVELYTEQQKHPLAQGIKQVFQAVGVNNF
SIO_010081: GSQ19_RS29405
subclass of: SO_0000673
so part of: GSQ19_RS29405
location: 8174..10297
location: region:8174-10297:1
so has part: feature:8174-10297:1:exon

WP_011316666.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8174-10297:1:exon

GSQ19_RS29410
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29410
old locus tag: GSQ19_29410
so part of: sequence
location: complement(10798..11883)
location: region:10798-11883:-1
so has part: feature:10798-11883:-1:exon
subclass of: SO_0000010

58727498
type: Gene
SIO_000068: ncbigene

position:10798:-1
position: 10798
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11883:-1
position: 11883
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10798-11883:-1:exon

GSQ19_RS29410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29410
old locus tag: GSQ19_29410
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011316665.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MDVTNIEVSSVEILSLNPVKVVTSNTSQQVTPELVEEVIRQYYYRTPAVNNDEELILAWAGSQNREQTKRKYYRFGQKLLDWVRHQGIPDLRLLQQPKLLEFIASWGEVSPYTKSNQILMLRSLWSYGSAENIGYFLRNIASTINYDNFSNLPKAERYLEDWEMAKLADAAKQLSGKHWLVFCLLFYSGMRVGEVGRVTVPGDEAGKPREDFPGLYWHNFKWQFDPATDDRQRGYYTIKFRGKGGKYREIGLDYETSKLLKKYRGMASDKMPVFPNMSPDPKKRGLPLSDRAIKRLIQDISEVAKVKFSCHWLRHSHATRAVDSKPLFEVQDQLGHSKSDTTKTYVRPKKDAGTGTILPRF
SIO_010081: GSQ19_RS29410
subclass of: SO_0000673
so part of: GSQ19_RS29410
location: complement(10798..11883)
location: region:10798-11883:-1
so has part: feature:10798-11883:-1:exon

WP_011316665.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10798-11883:-1:exon

GSQ19_RS29415
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29415
old locus tag: GSQ19_29415
so part of: sequence
location: complement(12099..12617)
location: region:12099-12617:-1
so has part: feature:12099-12617:-1:exon
subclass of: SO_0000010

58727499
type: Gene
SIO_000068: ncbigene

position:12099:-1
position: 12099
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12617:-1
position: 12617
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12099-12617:-1:exon

GSQ19_RS29415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29415
old locus tag: GSQ19_29415
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015116131.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTDHKTLPSEMIRVPTALIPAVKELSKLHRQGHTIALLQALEELFTQFDSKIDSDIAPSSKSILQLEKKLETKLDAITKKLELMERAMASGRYSSNTRPRRQAYSHQQPQVELLPRTNESLAQRLGVTPQSLIIETEKLSPKEFISWSRHRDPMSVGWEWDVRTELYHPVKQ
SIO_010081: GSQ19_RS29415
subclass of: SO_0000673
so part of: GSQ19_RS29415
location: complement(12099..12617)
location: region:12099-12617:-1
so has part: feature:12099-12617:-1:exon

WP_011316664.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12099-12617:-1:exon

GSQ19_RS29420
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
gene: dnaB
locus tag: GSQ19_RS29420
old locus tag: GSQ19_29420
so part of: sequence
location: complement(12825..14174)
location: region:12825-14174:-1
so has part: feature:12825-14174:-1:exon
subclass of: SO_0000010

58727500
type: Gene
SIO_000068: ncbigene

position:12825:-1
position: 12825
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14174:-1
position: 14174
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12825-14174:-1:exon

GSQ19_RS29420
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
gene: dnaB
locus tag: GSQ19_RS29420
old locus tag: GSQ19_29420
EC number: 3.6.4.12
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016868610.1
GO function: GO:0003678 - DNA helicase activity [Evidence IEA]
GO process: GO:0006260 - DNA replication [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replicative DNA helicase
translation: MSENLNFGDSNKLPPQNIEAEEAILGGILLDPDAISRVSDRLVPEAFYISAHKDIYQAAVRLHAQDKPTDLLSVTSWLTDRDLLFRIGGRNKLATLVDRTVSAVNIDALAVLVMEKYLRRELIKAGNEIVHLAHDQEEEIAKQLETAESKILEINNSAIASTSQPIHLSDILINAYSSIEEKSMGISPPGVKTGFYDLDAMIGGFKTGKLITIAGRPAMGKSSFLGNLAFNISSLEKLPTVIFSLEMTKEEWGDRFLSQDARIDSSYLQQGKIIKHQWEPLAQSIGRLSELPIYIDDSPVITVNSIRSKVKRIVAEYGHIGMVGIDYLQLMEGTDGDSYNLAFQIGKITRQLKQLARECNTTIVMLSQLNRGVESRTIKRPMMSDLRESGRIEEDSDLILLLYRDEYYYPDTIDRGIAEVIIAKNRGGPTGTTKLLFDAQFTQFKNLAR
SIO_010081: GSQ19_RS29420
subclass of: SO_0000673
so part of: GSQ19_RS29420
location: complement(12825..14174)
location: region:12825-14174:-1
so has part: feature:12825-14174:-1:exon

WP_011316663.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12825-14174:-1:exon

GSQ19_RS29425
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29425
old locus tag: GSQ19_29425
so part of: sequence
location: complement(14174..15142)
location: region:14174-15142:-1
so has part: feature:14174-15142:-1:exon
subclass of: SO_0000010

58727501
type: Gene
SIO_000068: ncbigene

position:15142:-1
position: 15142
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14174-15142:-1:exon

GSQ19_RS29425
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29425
old locus tag: GSQ19_29425
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017313954.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MarR family transcriptional regulator
translation: MTQLKIQGTFYPLQHEEWLRACRELTPAQRDVLYYLRTLDPYSSGLEVSPAQIAKDLSTPEKVVHRSTIGRALKVLDEKGFIDMELLKVKVNILPKGLHCCLSTSCAEATSCAEATSCAEATSCAEATSCAEATSCDETTVLPTGNLGDHDATSVIMTQQARSLRNKHEPEASPDKDSSTSKINKTYLDFLDSLSEGEREKFFEFGKKKAAELPKSPTLPLKWIEKNFEDIRSQWFQTRDEKNQKYNFAAYSQAQHQMWYGQLQALVCGAIQSGDKARLEQFLKDDFYSSWLNWAKTAREDVREFLASNPIPTENPVKAQVK
SIO_010081: GSQ19_RS29425
subclass of: SO_0000673
so part of: GSQ19_RS29425
location: complement(14174..15142)
location: region:14174-15142:-1
so has part: feature:14174-15142:-1:exon

WP_158647793.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14174-15142:-1:exon

GSQ19_RS29430
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29430
old locus tag: GSQ19_29430
so part of: sequence
location: 15518..15958
location: region:15518-15958:1
so has part: feature:15518-15958:1:exon
subclass of: SO_0000010

58727502
type: Gene
SIO_000068: ncbigene

position:15518:1
position: 15518
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15958:1
position: 15958
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15518-15958:1:exon

GSQ19_RS29430
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29430
old locus tag: GSQ19_29430
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKLNNCVPSVSSSVSPLSQSFDSTIKKYSISAKKLSSETRVSENHISEFRRGKCDVSTTVLSKLLDGMETLAPGAKQYFCYLMSGHQQSSSLKQSLVEIIQVADEDELLDAMGAIANRFRHLRAFGVAESEYESSTHLKLLKAKHL
SIO_010081: GSQ19_RS29430
subclass of: SO_0000673
so part of: GSQ19_RS29430
location: 15518..15958
location: region:15518-15958:1
so has part: feature:15518-15958:1:exon

WP_011316661.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15518-15958:1:exon

GSQ19_RS29435
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29435
old locus tag: GSQ19_29435
so part of: sequence
location: complement(16121..16504)
location: region:16121-16504:-1
so has part: feature:16121-16504:-1:exon
subclass of: SO_0000010

58727503
type: Gene
SIO_000068: ncbigene

position:16121:-1
position: 16121
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16504:-1
position: 16504
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16121-16504:-1:exon

GSQ19_RS29435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29435
old locus tag: GSQ19_29435
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012411206.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS1 family transposase
translation: MNTQESFNLNKLRCEVAMQQALQSWQPKPQVSGMECPKCNSHLLGKHGREPDGVQRYICKNCSRVFRARPLITCNCLIPGKELRCQSCPQFQEFLGIVKQKVDKLRCLSFQDLQSLKLSSETTQNST
SIO_010081: GSQ19_RS29435
subclass of: SO_0000673
so part of: GSQ19_RS29435
location: complement(16121..16504)
location: region:16121-16504:-1
so has part: feature:16121-16504:-1:exon

WP_011316660.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16121-16504:-1:exon

GSQ19_RS29440
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
gene: xisF
locus tag: GSQ19_RS29440
old locus tag: GSQ19_29440
so part of: sequence
location: complement(16526..18061)
location: region:16526-18061:-1
so has part: feature:16526-18061:-1:exon
subclass of: SO_0000010

58727504
type: Gene
SIO_000068: ncbigene

position:16526:-1
position: 16526
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18061:-1
position: 18061
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16526-18061:-1:exon

GSQ19_RS29440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
gene: xisF
locus tag: GSQ19_RS29440
old locus tag: GSQ19_29440
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012411205.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: fdxN element excision recombinase XisF
translation: MTEKTKIIVGYARVSSREQAVDSHALEQQIARLKAAGATEIFIDIESGSNDNRPALKKLMNLVELRQVNEVIITRIDRKARSLVKLRECIDIYQKAGVNLRILDQQIDLNTSQGKLMANVLGSLAEWETDALSDRIRHGKQHRRNQRAACESYPWGYQVIKDKYQLDTRLFLCLISDRPDNYLDLYNEDDVTKLPGLTIKQIARDCVDIFLQVQGVSRALKVIFAKYGLPRKHHKRNSRDSILHWTNAGFNNWLTNPVLCGHTAYFQRITISKGKRKKNKPEDWQIIHDTHPEHRLITDAEAVEIQQILKFNSKTGHFSFNQDPNHPVCYREYAYQTGLVFCAECGSKCITKSAKHKKGMYYYFACRYAGMGCGNKKSTRKCNIENALINTLVQRSQSLANELDQQATREQEKSEKLKQLESRLEALEKIPGFDPDLEKLKEKIRLQIAEEVNPFLSDSILSRSTEEIIRAGNNLAIWHTLSPDEKVKIYHQIVHQITIRNAEVEEVILKI
SIO_010081: GSQ19_RS29440
subclass of: SO_0000673
so part of: GSQ19_RS29440
location: complement(16526..18061)
location: region:16526-18061:-1
so has part: feature:16526-18061:-1:exon

WP_011316659.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16526-18061:-1:exon

GSQ19_RS29445
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29445
old locus tag: GSQ19_29445
so part of: sequence
location: complement(18058..18249)
location: region:18058-18249:-1
so has part: feature:18058-18249:-1:exon
subclass of: SO_0000010

58727505
type: Gene
SIO_000068: ncbigene

position:18058:-1
position: 18058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18249:-1
position: 18249
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18058-18249:-1:exon

GSQ19_RS29445
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29445
old locus tag: GSQ19_29445
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKIIAGYARVSSREQAVDSHALKQQTTRLKSAGATEIYQVIQSVSKDDRPRFKNRHYLKKLRL
SIO_010081: GSQ19_RS29445
subclass of: SO_0000673
so part of: GSQ19_RS29445
location: complement(18058..18249)
location: region:18058-18249:-1
so has part: feature:18058-18249:-1:exon

WP_011316658.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18058-18249:-1:exon

GSQ19_RS29450
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29450
old locus tag: GSQ19_29450
so part of: sequence
location: complement(18537..19634)
location: region:18537-19634:-1
so has part: feature:18537-19634:-1:exon
subclass of: SO_0000010

58727506
type: Gene
SIO_000068: ncbigene

position:18537:-1
position: 18537
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19634:-1
position: 19634
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18537-19634:-1:exon

GSQ19_RS29450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29450
old locus tag: GSQ19_29450
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNFYRSPHNINNMTEEEIREWAESVFQRPKALQELPLILTPEYLFQTPQKLRRQSSVIKSRLDAWILHAREEDERLRIERRFIPFVEIYIPDTSDGKQFFTIAKAIGEIPMQAGVLPKNQNQGYWLKTDHYFYQARGVLFAHKLLGVIPNPLEKHGLFWEYLPETSIRNLDLITNVDLAEYQLIKEGECYIQQWVAERNIVYPFNNPFELFLSIHQSAFLNSWALGPACQESEWLSIEQQEDFLAVRIRLLEQIPWIKREKERGTYQQQEQQYLKFLKKDKWYGYFILALRSHQWELAECWQQYTRALKAAKTAYIDDFYWQGGQPYKAQEIPVGEQPHQTRRTKKRQRVEGVINVLGYILWQWT
SIO_010081: GSQ19_RS29450
subclass of: SO_0000673
so part of: GSQ19_RS29450
location: complement(18537..19634)
location: region:18537-19634:-1
so has part: feature:18537-19634:-1:exon

WP_011316657.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18537-19634:-1:exon

GSQ19_RS29455
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29455
old locus tag: GSQ19_29455
so part of: sequence
location: 20273..21046
location: region:20273-21046:1
so has part: feature:20273-21046:1:exon
subclass of: SO_0000010

58727507
type: Gene
SIO_000068: ncbigene

position:20273:1
position: 20273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21046:1
position: 21046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20273-21046:1:exon

GSQ19_RS29455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29455
old locus tag: GSQ19_29455
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015173891.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MSKTRIIALFNQSGGVAKTTLTQNLGYHLALKKRRVLLVDMDPQASLTTFMGLESDELDQTIQQAIVDNQPLPIHPELIHGMALVPADINLAASEMQLASAIAREYRLKNALTTVQDKYDFILIDCPPSLGLLSIISLTAATHILVPIQCQFKSFKGTELLLSTVAQVRSHTNPNLQFAGFVPTMFDSRTAQESRTVKAVQEQLSDIGTVYPPIPKTIAFADASERRVPLTLFDKNHPAVSVLKKIANSLDKLELLP
SIO_010081: GSQ19_RS29455
subclass of: SO_0000673
so part of: GSQ19_RS29455
location: 20273..21046
location: region:20273-21046:1
so has part: feature:20273-21046:1:exon

WP_011316656.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20273-21046:1:exon

GSQ19_RS29460
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29460
old locus tag: GSQ19_29460
so part of: sequence
location: 21043..22005
location: region:21043-22005:1
so has part: feature:21043-22005:1:exon
subclass of: SO_0000010

58727508
type: Gene
SIO_000068: ncbigene

position:21043:1
position: 21043
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22005:1
position: 22005
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21043-22005:1:exon

GSQ19_RS29460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29460
old locus tag: GSQ19_29460
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017307357.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParB/RepB/Spo0J family partition protein
translation: MSSKRNEPYAAIKKPVELLFGSSTTATQPDSTLNATSTVAIDKIHLPTSQPRRYFDEHKLEELSRSIKELGILEPLLVRPLPGGDYELVAGERRYRAATMAGLTEVPIVAKAMDDTITYQVRLVENLQREDLNTLEETEGILELLALRLAISVDETVKLLQKMENEAKGKITRNVTGNSQTLLIEEVFTALGSMRWDSFVRNRLPLLNLPPDVLEVVRSGRLEYTKARAIARVKDQEIRIELVETAIDYNLSLSEIKQKVKEIEQQSESQSSSPTESTSLKERVDDTWRRFKKAKVWDDPKKKARIEKVLAQLEALMKED
SIO_010081: GSQ19_RS29460
subclass of: SO_0000673
so part of: GSQ19_RS29460
location: 21043..22005
location: region:21043-22005:1
so has part: feature:21043-22005:1:exon

WP_011316655.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21043-22005:1:exon

GSQ19_RS29465
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29465
old locus tag: GSQ19_29465
so part of: sequence
location: 22189..22599
location: region:22189-22599:1
so has part: feature:22189-22599:1:exon
subclass of: SO_0000010

58727509
type: Gene
SIO_000068: ncbigene

position:22189:1
position: 22189
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22599:1
position: 22599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22189-22599:1:exon

GSQ19_RS29465
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29465
old locus tag: GSQ19_29465
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012412899.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKIEQTVLEVSGVEITKTILVDLQKLSSYSGEPIAAVYADNLLRTMRKMRDKLPFDPYTEVVMALHDALAFQNRWIDYNASQYKGVCELLTSLVNQETINNSSVEDSILALENLGFDTLPFGVKIDHGLDTDEDEE
SIO_010081: GSQ19_RS29465
subclass of: SO_0000673
so part of: GSQ19_RS29465
location: 22189..22599
location: region:22189-22599:1
so has part: feature:22189-22599:1:exon

WP_011316654.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22189-22599:1:exon

GSQ19_RS29470
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29470
old locus tag: GSQ19_29470
so part of: sequence
location: 22606..23454
location: region:22606-23454:1
so has part: feature:22606-23454:1:exon
subclass of: SO_0000010

58727510
type: Gene
SIO_000068: ncbigene

position:22606:1
position: 22606
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23454:1
position: 23454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22606-23454:1:exon

GSQ19_RS29470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29470
old locus tag: GSQ19_29470
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012412898.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEDNSAPQHFLDTSVLRSLLLGTQIYKQYFESQFTDQPLYISNYVQMEMRRSYLMNLISFYFVLRLETINNIGDAIALWSNRFKTSELKAILQLIPQLFSTHQLNFSSRQDKETALSILGIYIKRFELLLRKKFNNTNADATACARAIVALNLDLQNAAAGLKQFADEFGDVNTCRSKCQIDQFLLVQYRSEIEQLVQIASQLPKNSNTRGFIKIVNNLKEILAQGAAACDCKRCEKIGDAVIAVNAPRNMQLEHTDNSFDYLCPPINQPHYKHPSENQIVK
SIO_010081: GSQ19_RS29470
subclass of: SO_0000673
so part of: GSQ19_RS29470
location: 22606..23454
location: region:22606-23454:1
so has part: feature:22606-23454:1:exon

WP_011316653.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22606-23454:1:exon

GSQ19_RS29480
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29480
old locus tag: GSQ19_29480
pseudo: true
so part of: sequence
location: <23674..23832
location: region:23674-23832:1
so has part: feature:23674-23832:1:exon
subclass of: SO_0000010

58727512
type: Gene
SIO_000068: ncbigene

position:23674:1
position: 23674
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:23832:1
position: 23832
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23674-23832:1:exon

GSQ19_RS29480
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29480
old locus tag: GSQ19_29480
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013293423.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
SIO_010081: GSQ19_RS29480
subclass of: SO_0000673
so part of: GSQ19_RS29480
location: <23674..23832
location: region:23674-23832:1
so has part: feature:23674-23832:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:23674-23832:1:exon

GSQ19_RS29485
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29485
old locus tag: GSQ19_29485
so part of: sequence
location: 24310..24870
location: region:24310-24870:1
so has part: feature:24310-24870:1:exon
subclass of: SO_0000010

58727513
type: Gene
SIO_000068: ncbigene

position:24310:1
position: 24310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24870:1
position: 24870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24310-24870:1:exon

GSQ19_RS29485
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29485
old locus tag: GSQ19_29485
inference: COORDINATES: protein motif:HMM:NF039385.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF6232 family protein
translation: MLSQFLPDEPNQPTEIKTSIIKIRGKTLIYGNVVYQIHNIASIGLVDLTTTVIKPMPKLFVVLPIIGVIFLFITSYIAKLIGFLLIVIGAWLIYQHNLNKTKTTERYGMTIYTNSGTKTILTSRSEDFLKKVILTLYTVMNSDELKAVNFNFETLDMSVDNSIKVGKNIGSPLNTGHIGGDVVNQV
SIO_010081: GSQ19_RS29485
subclass of: SO_0000673
so part of: GSQ19_RS29485
location: 24310..24870
location: region:24310-24870:1
so has part: feature:24310-24870:1:exon

WP_011316652.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24310-24870:1:exon

GSQ19_RS29490
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29490
old locus tag: GSQ19_29490
so part of: sequence
location: 24910..25296
location: region:24910-25296:1
so has part: feature:24910-25296:1:exon
subclass of: SO_0000010

58727514
type: Gene
SIO_000068: ncbigene

position:24910:1
position: 24910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25296:1
position: 25296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24910-25296:1:exon

GSQ19_RS29490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29490
old locus tag: GSQ19_29490
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002785269.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEDRSIKIGKNIGSPSNTGYIGGDVINEVKDSLNTYTQEQKQRLSEAAAEIQELLRQLEKSYPTDTTTGKMTVATEAIKHIDSNPKLHDRILSALKAGGVQALAQLLNHPAASFVISALEDWQKSKDI
SIO_010081: GSQ19_RS29490
subclass of: SO_0000673
so part of: GSQ19_RS29490
location: 24910..25296
location: region:24910-25296:1
so has part: feature:24910-25296:1:exon

WP_011316651.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24910-25296:1:exon

GSQ19_RS29495
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29495
old locus tag: GSQ19_29495
so part of: sequence
location: 26144..26896
location: region:26144-26896:1
so has part: feature:26144-26896:1:exon
subclass of: SO_0000010

58727515
type: Gene
SIO_000068: ncbigene

position:26144:1
position: 26144
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26896:1
position: 26896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26144-26896:1:exon

GSQ19_RS29495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29495
old locus tag: GSQ19_29495
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006196528.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGVVYIGDRKTGKTNLAMELANPKNEYVKVTSLDYENLKQRLYDVNTGEFRATDAEQAIYAEYLDIQVRLPTGNKQVLVDWIDTPGEVWRKTWQVDNQDKWQKFLETIHESEGILLILPPHRGLTFKSGVDTEQFMNQQQWCNRFDRWVEFFRQDCSKTRHILICINKADLFCDLSKEAAQLAYNPNGAQMNWQQRHTYVLQRYFRPIHSQLAQINSNVLGLSVRCFITSIYNRSLLELPWIYLGSFLAR
SIO_010081: GSQ19_RS29495
subclass of: SO_0000673
so part of: GSQ19_RS29495
location: 26144..26896
location: region:26144-26896:1
so has part: feature:26144-26896:1:exon

WP_011316650.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26144-26896:1:exon

GSQ19_RS29500
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29500
old locus tag: GSQ19_29500
so part of: sequence
location: 26912..27736
location: region:26912-27736:1
so has part: feature:26912-27736:1:exon
subclass of: SO_0000010

58727516
type: Gene
SIO_000068: ncbigene

position:26912:1
position: 26912
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27736:1
position: 27736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26912-27736:1:exon

GSQ19_RS29500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29500
old locus tag: GSQ19_29500
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015081272.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGNIRVIGPRGSGKTTYLAALAYQPVQPGSKTKKFQVQAINEDTRKLAEKAEALIMEGGSLEPTGVLVKTIDDVPVYSFNIEIKKLLLREKPINLAVRDYPGEIFDELEVGLTNHIQTEFIDECLAKDVAGCLIMLTEWKQGTDKHYSRVLQRFIELMDSQGRINDLRLAVAMSKCERGELWPGRLDPEIDLFNTHLPKTTKILKEKIPERNLNFYAISTFGVLGRNNPRPNRVEEWGTNGRNSILREANRWRPYNLIAPLYWLSTGRRMRNDA
SIO_010081: GSQ19_RS29500
subclass of: SO_0000673
so part of: GSQ19_RS29500
location: 26912..27736
location: region:26912-27736:1
so has part: feature:26912-27736:1:exon

WP_011316649.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26912-27736:1:exon

GSQ19_RS29505
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29505
old locus tag: GSQ19_29505
so part of: sequence
location: 27726..28631
location: region:27726-28631:1
so has part: feature:27726-28631:1:exon
subclass of: SO_0000010

58727517
type: Gene
SIO_000068: ncbigene

position:27726:1
position: 27726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28631:1
position: 28631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27726-28631:1:exon

GSQ19_RS29505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29505
old locus tag: GSQ19_29505
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006196526.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MMRDLFKKISAEPQQTSSVLRVIGDRSSGKTTYMASLARWPNADPSSPVQSVIPVGEAGQELINKAQNLLEQGLALEASNLDASAADVKDYSLRITLKGQFSWKNAKASVASQLINLNISCKDYAGEFFADLLQQAGNPKLGDYLDDCSQATGIMFLVDGNSRRKDIEYLAGLDKLLPLLDRADLVTGKRRISLVLTKCEQSELWVNRHKPAFLAEARFPQVYRKLQTWQQMGAGTVDYFTTSAFGMLGNTFPEPNVNLLSRGRDGIAAVIKDPKRWRPFGLVAPIYWLCTGDRHKELDKG
SIO_010081: GSQ19_RS29505
subclass of: SO_0000673
so part of: GSQ19_RS29505
location: 27726..28631
location: region:27726-28631:1
so has part: feature:27726-28631:1:exon

WP_011316648.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27726-28631:1:exon

GSQ19_RS29510
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29510
old locus tag: GSQ19_29510
so part of: sequence
location: 28636..30849
location: region:28636-30849:1
so has part: feature:28636-30849:1:exon
subclass of: SO_0000010

58727518
type: Gene
SIO_000068: ncbigene

position:28636:1
position: 28636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30849:1
position: 30849
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28636-30849:1:exon

GSQ19_RS29510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29510
old locus tag: GSQ19_29510
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNPATIEIHEFSTGIRPEKTADNGWVSRGFTGQYMNMTLPSVPSPVERSIANREFAVTEGASSDQPAIIGRVVGSGENVWSVVAVVTRGRDEIGRSLSVYRYFLCQGDKENLRLILAWWERQGMPKFNPFDSKTVRQPNLFDVNSVPPPNISQEARDLPMDSSDPILLTPTHQYNLQTINILAIRKFNTHSNGQPASWAFNVEALEQPRRFQVIQAASQRAYEILNRAIKNFPQFSAPVIADEEALKSAIRSLINSSQVKPEAIQAIIEALQNQQISKEYWHSLFDGQGAQTAYNQKIYSPQMVKLITLRAMVIPETITEFLAWLNVKHPKDKPDENQIVSLDFQASVRSKFPKEKLADGIKYILPKLLKQTIKPESVYWLFSNNSAWVSCRKQFIEDTVNDLNVIKEHFLNTQGKSTFPNELLKCDSENWKKLISYWKMVYSGKSYVEYYQPFAELFEYIKEYYLSAYFYQVSRGLVPKDIFDKVAQKNNIRSNSMTVLDLRLEREVTWFESLLNFILQEFIVPIQIVIPLSIFIFIGGLFVGSRFLAPEQSTVKQPIFKESSTISGNQGDRDIPEFNKNGQIKSNTSVSGSDIPLELNNKKTPTATLKSLDLNKGLQKFNTTSKVIQKIVSELANELNRDPQEIQTALKFILKDTQLDYAGAIDQERNGTDLVKEQKRWVRAIYKYQEGIDPSNAYGIMTDPENQSGGKTYKDLKQDIKKYFNPDYQGENPPRIR
SIO_010081: GSQ19_RS29510
subclass of: SO_0000673
so part of: GSQ19_RS29510
location: 28636..30849
location: region:28636-30849:1
so has part: feature:28636-30849:1:exon

WP_011316647.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28636-30849:1:exon

GSQ19_RS29515
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29515
old locus tag: GSQ19_29515
so part of: sequence
location: 30864..31949
location: region:30864-31949:1
so has part: feature:30864-31949:1:exon
subclass of: SO_0000010

58727519
type: Gene
SIO_000068: ncbigene

position:30864:1
position: 30864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31949:1
position: 31949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30864-31949:1:exon

GSQ19_RS29515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29515
old locus tag: GSQ19_29515
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015081269.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRIYLYILAGIISALLGWNIGQFLLTDLGLLKPFPEIILFPCVAISLAIGMVMNEIFISNPTRPKLSFRIAKTPLLIAFGLGLLAGLIAGGISQILFLPQIRVPTPIVRSLGWLLIGASVGLAEGLTWRWHSMEAGDAKRFWQRFFTSLIGASTASLVAAGLFEYIRKALGTMPPEFQGIEDPLGFSILGLLLGLVFSITNSPSYLGALRAGAGFEYTGPNYVDIDTQFQSVDQKIPYIDNSLLKFVSEGDTYEIEEGLSIQLPGTGTIRIGSAVKKSHIYIPNLPLHVADLILKKREAILSPNPQSFKTIEVNGERLTSRREIRLKHNYVLTFHTVKTDGNNEEKFYRFVYYNRFLDPQA
SIO_010081: GSQ19_RS29515
subclass of: SO_0000673
so part of: GSQ19_RS29515
location: 30864..31949
location: region:30864-31949:1
so has part: feature:30864-31949:1:exon

WP_011316646.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30864-31949:1:exon

GSQ19_RS29520
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29520
old locus tag: GSQ19_29520
so part of: sequence
location: 31963..33174
location: region:31963-33174:1
so has part: feature:31963-33174:1:exon
subclass of: SO_0000010

58727520
type: Gene
SIO_000068: ncbigene

position:31963:1
position: 31963
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33174:1
position: 33174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31963-33174:1:exon

GSQ19_RS29520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29520
old locus tag: GSQ19_29520
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006196523.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: vWA domain-containing protein
translation: MVAAFASPSFGQAKVAEIVGKPTVNDDRVTIRIKVKSAEERPIMGLQDTDFKLLVDQKEAVFKNKDWKSPEETTPPPAWIIVLLDFSGSMNKLDSRGTKKIEGAIKAIRQLTSVLKDRGENTQVAIVPFGEAGANCPQGYPVNKDTLDKFFAANDFKLQNNLDYLASLTPCASTNLYEPLKKAVKFLANTSDSRFYLPKDSPQTPPRLSIILLSDGYHNFANEAQDFQSLTTLLKRNTNIIVHTLGYGLTPEQLAQKYKLGKPATRADINSGKVPEAEFVDQQRLAEIAKITGGIAEFSGDAEAIAENLRIFLNALLGEYEITYTQPNAERGSKHDVQVVVTSSTNKPVKSPAKAYTITVFGRSLPLAVRLAMLACILVLISLGGILPFYFWGQHLKKEALGD
SIO_010081: GSQ19_RS29520
subclass of: SO_0000673
so part of: GSQ19_RS29520
location: 31963..33174
location: region:31963-33174:1
so has part: feature:31963-33174:1:exon

WP_224311961.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31963-33174:1:exon

GSQ19_RS29525
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29525
old locus tag: GSQ19_29525
so part of: sequence
location: 33183..34055
location: region:33183-34055:1
so has part: feature:33183-34055:1:exon
subclass of: SO_0000010

58727521
type: Gene
SIO_000068: ncbigene

position:33183:1
position: 33183
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34055:1
position: 34055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33183-34055:1:exon

GSQ19_RS29525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29525
old locus tag: GSQ19_29525
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNILLKLASPLFVIPLIVSGCTSSSGNTQNVISPNPSKCPDKSDAVLDAKKVKTINLSTQKITESGIVNQDKSVGYVFEAQAGQKLVYNTIQKVCISVYTPDNQLLNSGVLPITGKYTVQIAIPQGSTTFDLAMNLETQSTPSVPSPTVTPTTVNPPLVTTPPSVSPSPTPTNTFISRPLPTKLIEDYFAEINNDQYRNAWNILPVELQEDKKLHPNGYDSFLEWYKGKVDFINIHNISLVESNQNSATVKMKSTYDMKSGKKAPVNLKFYMIWNKSKQKWDISETKVID
SIO_010081: GSQ19_RS29525
subclass of: SO_0000673
so part of: GSQ19_RS29525
location: 33183..34055
location: region:33183-34055:1
so has part: feature:33183-34055:1:exon

WP_011316644.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:33183-34055:1:exon

GSQ19_RS29530
type: Gene
subclass of: SO_0000704
RO_0002162: 375899
locus tag: GSQ19_RS29530
old locus tag: GSQ19_29530
so part of: sequence
location: 34152..35069
location: region:34152-35069:1
so has part: feature:34152-35069:1:exon
subclass of: SO_0000010

58727522
type: Gene
SIO_000068: ncbigene

position:34152:1
position: 34152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34152-35069:1:exon

GSQ19_RS29530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375899
locus tag: GSQ19_RS29530
old locus tag: GSQ19_29530
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006196521.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ARC6/PARC6 family protein
translation: MKRIICYLTLLIISGCQQVTTSAPVASTCPEKPANTLAEKDVQEIVLDEQTLSKSGQASANKSIGYKFAAKSGQKFSFSTDTDICVWLYTPDSQILNGGDLPQTGKYILQVAALNGSKTFDMKMTLGILQASTSPTATPSDSITPSPTSVIPTPTPTPTPTPILTPTSGADLTQEQALNIVKEWYAAKPQVFAPPFDTSLVDKLATGKLYEKTTSSDPDIGPIAWLKASNSYYKYNQSEIRNVIEFANSGKQPYIKVRVFEELYLYGRNGNIDRQNSGSYQGNFIYFFEKDSNGVWKIYDYSKVN
SIO_010081: GSQ19_RS29530
subclass of: SO_0000673
so part of: GSQ19_RS29530
location: 34152..35069
location: region:34152-35069:1
so has part: feature:34152-35069:1:exon

WP_011316643.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:34152-35069:1:exon