Trichormus variabilis 0441 plasmid unnamed3, complete sequence.
Bacteria; Cyanobacteriota; Cyanophyceae; Nostocales; Nostocaceae; Trichormus.
Complete Genome Sequence of the Cyanobacterium Trichormus variabilis 0441 from Arshan thermal spring
Submitted (31-DEC-2019) Faculty of Biology, Department of Genetics, Lomonosov Moscow State Univercity, Leninskie gory, Moscow 119234, Russia
REFSEQ INFORMATION: The reference sequence is identical to\nCP047245.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 212.0x\nSequencing Technology :: Illumina HiSeq; Oxford Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/22/2023 16:18:53\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,971\nCDSs (total) :: 5,908\nGenes (coding) :: 5,820\nCDSs (with protein) :: 5,820\nGenes (RNA) :: 63\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 4\nPseudo Genes (total) :: 88\nCDSs (without protein) :: 88\nPseudo Genes (ambiguous residues) :: 0 of 88\nPseudo Genes (frameshifted) :: 23 of 88\nPseudo Genes (incomplete) :: 72 of 88\nPseudo Genes (internal stop) :: 21 of 88\nPseudo Genes (multiple problems) :: 23 of 88\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Department of Aquatic Microbiology, Limnological Institute SB RAS
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_015081265.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006196519.1
COORDINATES: similar to AA sequence:RefSeq:WP_006196518.1
COORDINATES: similar to AA sequence:RefSeq:WP_006278063.1
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006196516.1
protein phosphatase 2C domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015081259.1
GO:0004672 - protein kinase activity [Evidence IEA]
GO:0006468 - protein phosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011316665.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015116131.1
COORDINATES: similar to AA sequence:RefSeq:WP_016868610.1
GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017313954.1
COORDINATES: similar to AA sequence:RefSeq:WP_012411206.1
COORDINATES: similar to AA sequence:RefSeq:WP_012411205.1
COORDINATES: similar to AA sequence:RefSeq:WP_015173891.1
COORDINATES: similar to AA sequence:RefSeq:WP_017307357.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_012412899.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412898.1
COORDINATES: similar to AA sequence:RefSeq:WP_013293423.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF039385.1
COORDINATES: similar to AA sequence:RefSeq:WP_002785269.1
COORDINATES: similar to AA sequence:RefSeq:WP_006196528.1
COORDINATES: similar to AA sequence:RefSeq:WP_015081272.1
COORDINATES: similar to AA sequence:RefSeq:WP_006196526.1
COORDINATES: similar to AA sequence:RefSeq:WP_015081269.1
COORDINATES: similar to AA sequence:RefSeq:WP_006196523.1
COORDINATES: similar to AA sequence:RefSeq:WP_006196521.1