Sinorhizobium mexicanum strain ITTG R7 plasmid pEmeITTGR7a, complete sequence.
Sinorhizobium mexicanum (Ensifer mexicanus)
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
Complete genome sequence of Ensifer mexicanus ITTG R7 isolated from nodules of Acacia angustissima (Mill.) Kuntze
Submitted (26-JUN-2019) Ecological Genomics, Center for Genomic Sciences, Av. Universidad, Cuernavaca, Morelos 62210, Mexico
REFSEQ INFORMATION: The reference sequence is identical to\nCP041239.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 20-JUN-2019\nAssembly Method :: HGAP v. 3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 234.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/14/2023 12:09:28\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,641\nCDSs (total) :: 6,574\nGenes (coding) :: 6,410\nCDSs (with protein) :: 6,410\nGenes (RNA) :: 67\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 54\nncRNAs :: 4\nPseudo Genes (total) :: 164\nCDSs (without protein) :: 164\nPseudo Genes (ambiguous residues) :: 0 of 164\nPseudo Genes (frameshifted) :: 95 of 164\nPseudo Genes (incomplete) :: 116 of 164\nPseudo Genes (internal stop) :: 24 of 164\nPseudo Genes (multiple problems) :: 60 of 164\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_017275348.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014332786.1
GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0001072 - transcription antitermination factor activity, RNA binding [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015633599.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003518564.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558660.1
COORDINATES: protein motif:HMM:NF039808.1
COORDINATES: similar to AA sequence:RefSeq:WP_019998661.1
GO:0008641 - ubiquitin-like modifier activating enzyme activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025817.2
multiubiquitin domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015689786.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF014442.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020043707.1
COORDINATES: similar to AA sequence:RefSeq:WP_013067187.1
COORDINATES: similar to AA sequence:RefSeq:WP_004680481.1
COORDINATES: similar to AA sequence:RefSeq:WP_004680480.1
COORDINATES: similar to AA sequence:RefSeq:WP_011440488.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015951459.1
COORDINATES: similar to AA sequence:RefSeq:WP_003525992.1
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_018236744.1
GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_018517446.1
COORDINATES: similar to AA sequence:RefSeq:WP_018210733.1
COORDINATES: similar to AA sequence:RefSeq:WP_012650505.1
COORDINATES: similar to AA sequence:RefSeq:WP_007817586.1
COORDINATES: similar to AA sequence:RefSeq:WP_006337788.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013893907.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007815318.1
succinylglutamate desuccinylase/aspartoacylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018236817.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018236818.1
GO:0015109 - chromate transmembrane transporter activity [Evidence IEA]
GO:0015703 - chromate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003593552.1
sulfurtransferase/chromate resistance protein
COORDINATES: protein motif:HMM:NF024880.2
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012655.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010967863.1
COORDINATES: similar to AA sequence:RefSeq:WP_011970461.1
GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013845582.1
COORDINATES: similar to AA sequence:RefSeq:WP_005755276.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011970463.1
COORDINATES: similar to AA sequence:RefSeq:WP_018236827.1
COORDINATES: similar to AA sequence:RefSeq:WP_018236832.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018236833.1
COORDINATES: similar to AA sequence:RefSeq:WP_018236834.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016646 - oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018236835.1
aspartate/glutamate racemase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010967869.1
nickel ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010967868.1
COORDINATES: similar to AA sequence:RefSeq:WP_018428817.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013845584.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018236840.1
COORDINATES: protein motif:HMM:NF012706.2
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017277405.1
COORDINATES: similar to AA sequence:RefSeq:WP_013845585.1
COORDINATES: similar to AA sequence:RefSeq:WP_017277406.1
COORDINATES: similar to AA sequence:RefSeq:WP_006333708.1
COORDINATES: protein motif:HMM:NF013228.2
COORDINATES: similar to AA sequence:RefSeq:WP_011581267.1
COORDINATES: protein motif:HMM:NF019604.2
COORDINATES: protein motif:HMM:NF013434.2
GO:0071949 - FAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015431.2
LysR substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF024754.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014528793.1
COORDINATES: similar to AA sequence:RefSeq:WP_014761974.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:1905887 - autoinducer AI-2 transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF015410.2
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013831444.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF020419.2
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: protein motif:HMM:NF036757.2
neuraminidase-like domain-containing protein
COORDINATES: protein motif:HMM:NF015497.2
SpvB/TcaC N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017264495.1
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: protein motif:HMM:NF012301.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:NF024242.2
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015927446.1
COORDINATES: similar to AA sequence:RefSeq:WP_011485975.1
COORDINATES: protein motif:HMM:NF015325.2
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011485974.1
COORDINATES: similar to AA sequence:RefSeq:WP_019400160.1
COORDINATES: similar to AA sequence:RefSeq:WP_009178491.1
GO:0009436 - glyoxylate catabolic process [Evidence IEA]; GO:0071704 - organic substance metabolic process [Evidence IEA]
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018699794.1
GO:0000334 - 3-hydroxyanthranilate 3,4-dioxygenase activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018430753.1
COORDINATES: similar to AA sequence:RefSeq:WP_018430743.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_008942935.1
COORDINATES: similar to AA sequence:RefSeq:WP_002711444.1
COORDINATES: similar to AA sequence:RefSeq:WP_019404705.1
GO:0015803 - branched-chain amino acid transport [Evidence IEA]
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_010683562.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611189.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018240560.1
COORDINATES: similar to AA sequence:RefSeq:WP_018010949.1
COORDINATES: similar to AA sequence:RefSeq:WP_018210340.1
COORDINATES: similar to AA sequence:RefSeq:WP_018010571.1
GO:0003684 - damaged DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003523541.1
COORDINATES: similar to AA sequence:RefSeq:WP_012092589.1
COORDINATES: similar to AA sequence:RefSeq:WP_003167762.1
COORDINATES: similar to AA sequence:RefSeq:WP_018097878.1
GO:0004751 - ribose-5-phosphate isomerase activity [Evidence IEA]
GO:0009052 - pentose-phosphate shunt, non-oxidative branch [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003525806.1
GO:0005886 - plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011969380.1
COORDINATES: similar to AA sequence:RefSeq:WP_017268874.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018097874.1
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015436616.1
GO:0008797 - aspartate ammonia-lyase activity [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018236806.1
dicarboxylate/amino acid:cation symporter
COORDINATES: similar to AA sequence:RefSeq:WP_004333028.1
COORDINATES: similar to AA sequence:RefSeq:WP_018236808.1
sigma-54 dependent transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018240275.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017265258.1
COORDINATES: similar to AA sequence:RefSeq:WP_014531420.1
COORDINATES: protein motif:HMM:NF014753.2
GO:0004371 - glycerone kinase activity [Evidence IEA]
GO:0006071 - glycerol metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007877234.1
COORDINATES: similar to AA sequence:RefSeq:WP_009734860.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0004784 - superoxide dismutase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009340103.1
GO:0016746 - acyltransferase activity [Evidence IEA]; GO:0071972 - peptidoglycan L,D-transpeptidase activity [Evidence IEA]
GO:0018104 - peptidoglycan-protein cross-linking [Evidence IEA]
COORDINATES: protein motif:HMM:NF012273.2
GO:0005515 - protein binding [Evidence IEA]
GO:0006749 - glutathione metabolic process [Evidence IEA]
glutathione S-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007877497.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019965979.1
COORDINATES: similar to AA sequence:RefSeq:WP_006049576.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018095195.1
COORDINATES: similar to AA sequence:RefSeq:WP_013845885.1
COORDINATES: similar to AA sequence:RefSeq:WP_010695610.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013094047.1
COORDINATES: similar to AA sequence:RefSeq:WP_017134354.1
COORDINATES: similar to AA sequence:RefSeq:WP_020719106.1
COORDINATES: similar to AA sequence:RefSeq:WP_015887514.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014331744.1
COORDINATES: similar to AA sequence:RefSeq:WP_015887516.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014331742.1
COORDINATES: similar to AA sequence:RefSeq:WP_015887518.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]; GO:0019808 - polyamine binding [Evidence IEA]
GO:0015846 - polyamine transport [Evidence IEA]
spermidine/putrescine ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_015887519.1
COORDINATES: similar to AA sequence:RefSeq:WP_014331739.1
mandelate racemase/muconate lactonizing enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014331738.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015887522.1
COORDINATES: similar to AA sequence:RefSeq:WP_015887523.1
COORDINATES: similar to AA sequence:RefSeq:WP_014331735.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
GMC family oxidoreductase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014331734.1
COORDINATES: similar to AA sequence:RefSeq:WP_012651092.1
GO:0008802 - betaine-aldehyde dehydrogenase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0019285 - glycine betaine biosynthetic process from choline [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018041914.1
rhodanese-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007560606.1
quinoprotein dehydrogenase-associated SoxYZ-like carrier
COORDINATES: similar to AA sequence:RefSeq:WP_012253348.1
quinoprotein relay system zinc metallohydrolase 2
COORDINATES: similar to AA sequence:RefSeq:WP_007535322.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020749734.1
COORDINATES: similar to AA sequence:RefSeq:WP_010967830.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014990191.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018896448.1
COORDINATES: similar to AA sequence:RefSeq:WP_007821728.1
iron chelate uptake ABC transporter family permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007878446.1
GO:0006826 - iron ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007821730.1
COORDINATES: similar to AA sequence:RefSeq:WP_007878442.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0015343 - siderophore-iron transmembrane transporter activity [Evidence IEA]
GO:0015891 - siderophore transport [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018896453.1
MurR/RpiR family transcriptional regulator
COORDINATES: protein motif:HMM:NF015581.2
COORDINATES: protein motif:HMM:NF014068.2
GO:0019172 - glyoxalase III activity [Evidence IEA]
type 1 glutamine amidotransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008840707.1
COORDINATES: similar to AA sequence:RefSeq:WP_012706218.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_043766018.1
leucine zipper domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017268387.1
GO:0045148 - tripeptide aminopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018098119.1
COORDINATES: similar to AA sequence:RefSeq:WP_012061947.1
COORDINATES: similar to AA sequence:RefSeq:WP_017272228.1
COORDINATES: similar to AA sequence:RefSeq:WP_010975490.1
COORDINATES: similar to AA sequence:RefSeq:WP_014530541.1
COORDINATES: similar to AA sequence:RefSeq:WP_015243219.1
COORDINATES: similar to AA sequence:RefSeq:WP_010975487.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012384461.1
COORDINATES: similar to AA sequence:RefSeq:WP_012384462.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007842058.1
COORDINATES: similar to AA sequence:RefSeq:WP_012384464.1
COORDINATES: similar to AA sequence:RefSeq:WP_012384465.1
COORDINATES: similar to AA sequence:RefSeq:WP_008970407.1
COORDINATES: similar to AA sequence:RefSeq:WP_012706293.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017996016.1
COORDINATES: similar to AA sequence:RefSeq:WP_003562240.1
COORDINATES: protein motif:HMM:NF024583.2
COORDINATES: protein motif:HMM:NF014667.2
COORDINATES: protein motif:HMM:NF020650.2
COORDINATES: similar to AA sequence:RefSeq:WP_006201468.1
COORDINATES: similar to AA sequence:RefSeq:WP_015886881.1
COORDINATES: protein motif:HMM:NF014717.2
COORDINATES: similar to AA sequence:RefSeq:WP_018234708.1
COORDINATES: similar to AA sequence:RefSeq:WP_018236948.1
GO:0070191 - methionine-R-sulfoxide reductase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014762676.1
YeeE/YedE thiosulfate transporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015886698.1
COORDINATES: similar to AA sequence:RefSeq:WP_015886699.1
COORDINATES: similar to AA sequence:RefSeq:WP_014531590.1
COORDINATES: similar to AA sequence:RefSeq:WP_017270063.1
COORDINATES: similar to AA sequence:RefSeq:WP_017265831.1
COORDINATES: similar to AA sequence:RefSeq:WP_011970595.1
COORDINATES: similar to AA sequence:RefSeq:WP_015342173.1
COORDINATES: similar to AA sequence:RefSeq:WP_015342174.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_002718026.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: similar to AA sequence:RefSeq:WP_013078843.1
COORDINATES: similar to AA sequence:RefSeq:WP_014193122.1
COORDINATES: similar to AA sequence:RefSeq:WP_003600927.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_019170378.1
COORDINATES: similar to AA sequence:RefSeq:WP_008840476.1
COORDINATES: similar to AA sequence:RefSeq:WP_008840478.1
COORDINATES: similar to AA sequence:RefSeq:WP_014761913.1
COORDINATES: similar to AA sequence:RefSeq:WP_005822315.1
COORDINATES: similar to AA sequence:RefSeq:WP_019858880.1
COORDINATES: protein motif:HMM:NF013116.2
COORDINATES: similar to AA sequence:RefSeq:WP_003375771.1
COORDINATES: protein motif:HMM:NF024260.2
COORDINATES: similar to AA sequence:RefSeq:WP_014493455.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762534.1
COORDINATES: similar to AA sequence:RefSeq:WP_012114957.1
COORDINATES: similar to AA sequence:RefSeq:WP_012114958.1
glutathione-dependent disulfide-bond oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_013521172.1
COORDINATES: similar to AA sequence:RefSeq:WP_008593025.1
GO:0005247 - voltage-gated chloride channel activity [Evidence IEA]
GO:0006821 - chloride transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002118292.1
COORDINATES: similar to AA sequence:RefSeq:WP_003464980.1
COORDINATES: similar to AA sequence:RefSeq:WP_008124147.1
COORDINATES: similar to AA sequence:RefSeq:WP_015688644.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0003955 - NAD(P)H dehydrogenase (quinone) activity [Evidence IEA]
GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015934090.1
COORDINATES: similar to AA sequence:RefSeq:WP_012248800.1
COORDINATES: similar to AA sequence:RefSeq:WP_014526768.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003551415.1
GO:0003870 - 5-aminolevulinate synthase activity [Evidence IEA]
GO:0006783 - heme biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004670352.1
GO:0051082 - unfolded protein binding [Evidence IEA]
GO:0017004 - cytochrome complex assembly [Evidence IEA]
c-type cytochrome biogenesis protein CcmI
COORDINATES: similar to AA sequence:RefSeq:WP_012557065.1
GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007626673.1
COORDINATES: similar to AA sequence:RefSeq:WP_016553313.1
cytochrome c-type biogenesis protein CcmH
COORDINATES: similar to AA sequence:RefSeq:WP_011427389.1
COORDINATES: similar to AA sequence:RefSeq:WP_017962447.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
DsbE family thiol:disulfide interchange protein
COORDINATES: similar to AA sequence:RefSeq:WP_007814554.1
GO:0017004 - cytochrome complex assembly [Evidence IEA]; GO:0015886 - heme transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017989729.1
COORDINATES: similar to AA sequence:RefSeq:WP_012078815.1
COORDINATES: similar to AA sequence:RefSeq:WP_018857014.1
COORDINATES: similar to AA sequence:RefSeq:WP_008836278.1
GO:0033744 - L-methionine:thioredoxin-disulfide S-oxidoreductase activity [Evidence IEA]; GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
peptide-methionine (S)-S-oxide reductase MsrA
COORDINATES: similar to AA sequence:RefSeq:WP_014493434.1
COORDINATES: similar to AA sequence:RefSeq:WP_014493435.1
COORDINATES: similar to AA sequence:RefSeq:WP_015887326.1
COORDINATES: similar to AA sequence:RefSeq:WP_003464988.1
COORDINATES: protein motif:HMM:NF019886.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma factor-like helix-turn-helix DNA-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009453084.1
COORDINATES: similar to AA sequence:RefSeq:WP_008451893.1
COORDINATES: protein motif:HMM:NF021530.2
COORDINATES: similar to AA sequence:RefSeq:WP_014493452.1
COORDINATES: similar to AA sequence:RefSeq:WP_014493453.1
GO:0055085 - transmembrane transport [Evidence IEA]; GO:0042908 - xenobiotic transport [Evidence IEA]
multidrug efflux RND transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008965774.1
COORDINATES: similar to AA sequence:RefSeq:WP_012078814.1
COORDINATES: similar to AA sequence:RefSeq:WP_019858868.1
COORDINATES: similar to AA sequence:RefSeq:WP_014493466.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014493465.1
GO:0043546 - molybdopterin cofactor binding [Evidence IEA]
xanthine dehydrogenase family protein molybdopterin-binding subunit
COORDINATES: protein motif:HMM:NF020123.2
COORDINATES: similar to AA sequence:RefSeq:WP_003519251.1
DNA starvation/stationary phase protection protein
COORDINATES: similar to AA sequence:RefSeq:WP_014493460.1
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: similar to AA sequence:RefSeq:WP_018068930.1
COORDINATES: similar to AA sequence:RefSeq:WP_008528708.1
GO:0004853 - uroporphyrinogen decarboxylase activity [Evidence IEA]
GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017041406.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
SbcC/MukB-like Walker B domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018493549.1
COORDINATES: similar to AA sequence:RefSeq:WP_012651950.1
GO:0004109 - coproporphyrinogen oxidase activity [Evidence IEA]
oxygen-dependent coproporphyrinogen oxidase
COORDINATES: protein motif:HMM:NF012422.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007632513.1
GO:0004418 - hydroxymethylbilane synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006315202.1
COORDINATES: similar to AA sequence:RefSeq:WP_020051606.1
GO:0004325 - ferrochelatase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019831847.1
COORDINATES: similar to AA sequence:RefSeq:WP_018240022.1
COORDINATES: similar to AA sequence:RefSeq:WP_010967638.1
COORDINATES: similar to AA sequence:RefSeq:WP_014328680.1
GO:0008535 - respiratory chain complex IV assembly [Evidence IEA]
cbb3-type cytochrome oxidase assembly protein CcoS
COORDINATES: similar to AA sequence:RefSeq:WP_018243968.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]
GO:0015439 - ABC-type heme transporter activity [Evidence IEA]
GO:0015886 - heme transport [Evidence IEA]
heme ABC exporter ATP-binding protein CcmA
COORDINATES: similar to AA sequence:RefSeq:WP_003589746.1
GO:0015232 - heme transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007766126.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0004733 - pyridoxamine-phosphate oxidase activity [Evidence IEA]
GO:0008615 - pyridoxine biosynthetic process [Evidence IEA]
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007565469.1
COORDINATES: similar to AA sequence:RefSeq:WP_014874052.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654541.1
COORDINATES: similar to AA sequence:RefSeq:WP_018429618.1
COORDINATES: similar to AA sequence:RefSeq:WP_018446487.1
COORDINATES: similar to AA sequence:RefSeq:WP_012564274.1
COORDINATES: similar to AA sequence:RefSeq:WP_018237291.1
COORDINATES: similar to AA sequence:RefSeq:WP_003546170.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]
cytochrome-c oxidase, cbb3-type subunit III
COORDINATES: similar to AA sequence:RefSeq:WP_008839045.1
cbb3-type cytochrome c oxidase subunit 3
COORDINATES: similar to AA sequence:RefSeq:WP_019403445.1
cytochrome-c oxidase, cbb3-type subunit II
COORDINATES: similar to AA sequence:RefSeq:WP_018237295.1
cytochrome-c oxidase, cbb3-type subunit I
COORDINATES: similar to AA sequence:RefSeq:WP_020013440.1
COORDINATES: similar to AA sequence:RefSeq:WP_010140378.1
GO:0004671 - protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity [Evidence IEA]
GO:0006481 - C-terminal protein methylation [Evidence IEA]
isoprenylcysteine carboxylmethyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007635327.1
COORDINATES: similar to AA sequence:RefSeq:WP_004178046.1
GO:0015385 - sodium:proton antiporter activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009859330.1
COORDINATES: similar to AA sequence:RefSeq:WP_018904403.1
COORDINATES: similar to AA sequence:RefSeq:WP_007877480.1
gluconate 2-dehydrogenase subunit 3 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007413333.1
COORDINATES: similar to AA sequence:RefSeq:WP_010909577.1
COORDINATES: protein motif:HMM:NF019205.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00229.1
PAS domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_009491820.1
COORDINATES: similar to AA sequence:RefSeq:WP_009622999.1
COORDINATES: similar to AA sequence:RefSeq:WP_009859401.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654429.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517713.1
COORDINATES: protein motif:HMM:NF014608.2
COORDINATES: similar to AA sequence:RefSeq:WP_019861420.1
COORDINATES: similar to AA sequence:RefSeq:WP_019831910.1
GO:0016746 - acyltransferase activity [Evidence IEA]
GO:0006635 - fatty acid beta-oxidation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017133651.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013958578.1
COORDINATES: similar to AA sequence:RefSeq:WP_006049577.1
glutathione S-transferase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019404143.1
GO:0033743 - peptide-methionine (R)-S-oxide reductase activity [Evidence IEA]
peptide-methionine (R)-S-oxide reductase MsrB
COORDINATES: similar to AA sequence:RefSeq:WP_019404142.1
COORDINATES: similar to AA sequence:RefSeq:WP_012078822.1
COORDINATES: similar to AA sequence:RefSeq:WP_008308691.1
GO:0052699 - ergothioneine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016842717.1
COORDINATES: similar to AA sequence:RefSeq:WP_011653600.1
COORDINATES: similar to AA sequence:RefSeq:WP_015161461.1
COORDINATES: similar to AA sequence:RefSeq:WP_014493444.1
GO:0030745 - dimethylhistidine N-methyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF020909.2
COORDINATES: similar to AA sequence:RefSeq:WP_014490483.1
COORDINATES: similar to AA sequence:RefSeq:WP_008952964.1
COORDINATES: similar to AA sequence:RefSeq:WP_003555132.1
COORDINATES: protein motif:HMM:NF025887.2
COORDINATES: similar to AA sequence:RefSeq:WP_076612228.1
COORDINATES: similar to AA sequence:RefSeq:WP_018069713.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549367.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018069720.1
COORDINATES: similar to AA sequence:RefSeq:WP_018069721.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549373.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549375.1
COORDINATES: similar to AA sequence:RefSeq:WP_012557369.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
sulfoxide reductase heme-binding subunit YedZ
COORDINATES: similar to AA sequence:RefSeq:WP_009859404.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0022904 - respiratory electron transport chain [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018069743.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549387.1
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF018264.2
COORDINATES: similar to AA sequence:RefSeq:WP_017992370.1
COORDINATES: protein motif:HMM:NF017128.2
COORDINATES: similar to AA sequence:RefSeq:WP_023759937.1
COORDINATES: similar to AA sequence:RefSeq:WP_010969460.1
COORDINATES: similar to AA sequence:RefSeq:WP_018444521.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427422.1
COORDINATES: similar to AA sequence:RefSeq:WP_015341926.1
COORDINATES: similar to AA sequence:RefSeq:WP_012655047.1
DUF3991 and toprim domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003525125.1
COORDINATES: similar to AA sequence:RefSeq:WP_018240610.1
COORDINATES: similar to AA sequence:RefSeq:WP_013650718.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018245370.1
GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018245369.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_015341931.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_010974883.1
COORDINATES: similar to AA sequence:RefSeq:WP_012650573.1
COORDINATES: similar to AA sequence:RefSeq:WP_018325591.1
COORDINATES: similar to AA sequence:RefSeq:WP_018240814.1
COORDINATES: similar to AA sequence:RefSeq:WP_014989427.1
COORDINATES: similar to AA sequence:RefSeq:WP_018516741.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018098121.1
COORDINATES: similar to AA sequence:RefSeq:WP_012477327.1
COORDINATES: similar to AA sequence:RefSeq:WP_012559843.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427437.1
COORDINATES: similar to AA sequence:RefSeq:WP_018326261.1
COORDINATES: similar to AA sequence:RefSeq:WP_015341943.1
COORDINATES: similar to AA sequence:RefSeq:WP_015341944.1
COORDINATES: similar to AA sequence:RefSeq:WP_018098125.1
Ti-type conjugative transfer system protein TraG
COORDINATES: similar to AA sequence:RefSeq:WP_018516734.1
type IV conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_015341946.1
COORDINATES: similar to AA sequence:RefSeq:WP_020048127.1
Ti-type conjugative transfer relaxase TraA
COORDINATES: similar to AA sequence:RefSeq:WP_011427444.1
GO:0008233 - peptidase activity [Evidence IEA]
conjugative transfer signal peptidase TraF
COORDINATES: similar to AA sequence:RefSeq:WP_020048129.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558649.1
COORDINATES: similar to AA sequence:RefSeq:WP_018098132.1
COORDINATES: similar to AA sequence:RefSeq:WP_018245318.1
COORDINATES: similar to AA sequence:RefSeq:WP_003551594.1
COORDINATES: similar to AA sequence:RefSeq:WP_018482035.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875418.1
COORDINATES: similar to AA sequence:RefSeq:WP_018097602.1
autoinducer binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013984777.1
IncP-type conjugal transfer protein TrbI
COORDINATES: similar to AA sequence:RefSeq:WP_020048152.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427455.1
GO:0009291 - unidirectional conjugation [Evidence IEA]
P-type conjugative transfer protein TrbG
COORDINATES: similar to AA sequence:RefSeq:WP_018482029.1
COORDINATES: similar to AA sequence:RefSeq:WP_010875424.1
P-type conjugative transfer protein TrbL
COORDINATES: similar to AA sequence:RefSeq:WP_014858036.1
GO:0009292 - horizontal gene transfer [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014858035.1
P-type conjugative transfer protein TrbJ
COORDINATES: similar to AA sequence:RefSeq:WP_018098144.1
COORDINATES: similar to AA sequence:RefSeq:WP_013984785.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858032.1
COORDINATES: similar to AA sequence:RefSeq:WP_004129936.1
COORDINATES: similar to AA sequence:RefSeq:WP_007539592.1
GO:0061579 - N-acyl homoserine lactone synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010875046.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858028.1
COORDINATES: similar to AA sequence:RefSeq:WP_014858027.1