Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed2, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.
Complete genome of Paenibacillus cellulosilyticus KACC 14175
Submitted (08-JUN-2020) College of Agriculture and Life Sciences, Kyungpook National University, Daehak-ro, Daegu 41566, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP054610.1.\nBacteria and source DNA available from Shin's Lab.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 07-FEB-2020\nAssembly Method :: HGAP v. 4\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 137.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/09/2023 04:42:59\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,271\nCDSs (total) :: 6,115\nGenes (coding) :: 6,028\nCDSs (with protein) :: 6,028\nGenes (RNA) :: 156\nrRNAs :: 12, 13, 13 (5S, 16S, 23S)\ncomplete rRNAs :: 12, 13, 13 (5S, 16S, 23S)\ntRNAs :: 114\nncRNAs :: 4\nPseudo Genes (total) :: 87\nCDSs (without protein) :: 87\nPseudo Genes (ambiguous residues) :: 0 of 87\nPseudo Genes (frameshifted) :: 34 of 87\nPseudo Genes (incomplete) :: 59 of 87\nPseudo Genes (internal stop) :: 12 of 87\nPseudo Genes (multiple problems) :: 15 of 87\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF024139.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF024949.2
helix-turn-helix transcriptional regulator
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF013623.2
COORDINATES: similar to AA sequence:RefSeq:WP_007781840.1
COORDINATES: similar to AA sequence:RefSeq:WP_007781843.1
COORDINATES: similar to AA sequence:RefSeq:WP_006039096.1
COORDINATES: protein motif:HMM:TIGR01671.1
COORDINATES: similar to AA sequence:RefSeq:WP_013841123.1
COORDINATES: similar to AA sequence:RefSeq:WP_019123622.1
COORDINATES: similar to AA sequence:RefSeq:WP_006857541.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005832086.1
COORDINATES: similar to AA sequence:RefSeq:WP_011877557.1
COORDINATES: similar to AA sequence:RefSeq:WP_007129561.1
COORDINATES: similar to AA sequence:RefSeq:WP_018306296.1
COORDINATES: protein motif:HMM:NF016432.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma factor-like helix-turn-helix DNA-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_005551828.1
COORDINATES: protein motif:HMM:NF015211.2
COORDINATES: similar to AA sequence:RefSeq:WP_015552401.1
COORDINATES: protein motif:HMM:NF020438.2
COORDINATES: similar to AA sequence:RefSeq:WP_017814450.1
COORDINATES: protein motif:HMM:NF013884.2
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
COORDINATES: protein motif:HMM:NF014548.2
COORDINATES: similar to AA sequence:RefSeq:WP_012422920.1
COORDINATES: similar to AA sequence:RefSeq:WP_015846711.1
COORDINATES: similar to AA sequence:RefSeq:WP_015846710.1
COORDINATES: similar to AA sequence:RefSeq:WP_018671962.1