Loigolactobacillus backii strain TMW 1.1989 plasmid pL11989-7, complete sequence.
type: Entry
definition: Loigolactobacillus backii strain TMW 1.1989 plasmid pL11989-7, complete sequence.
sequence version: NZ_CP014880.1
sequence date: 2023-02-06
sequence: sequence
division: CON
label: NZ_CP014880.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN04505727
keyword: RefSeq
source: Loigolactobacillus backii
organism: Loigolactobacillus backii
taxonomy: Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Loigolactobacillus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP014880.1.\nSource DNA or bacteria available from the culture collection of the\nTechnische Mikrobiologie Weihenstephan upon request and only if\npermitted by a potential cooperation partner. Individual decisions.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Celera Assembler v. 1\nAssembly Name :: Lbackii11989-1\nLong Assembly Name :: Lactobacillus backii TMW 1.1989 1\nGenome Coverage :: 89\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/05/2023 23:00:11\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,668\nCDSs (total) :: 2,582\nGenes (coding) :: 2,526\nCDSs (with protein) :: 2,526\nGenes (RNA) :: 86\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 67\nncRNAs :: 4\nPseudo Genes (total) :: 56\nCDSs (without protein) :: 56\nPseudo Genes (ambiguous residues) :: 0 of 56\nPseudo Genes (frameshifted) :: 13 of 56\nPseudo Genes (incomplete) :: 36 of 56\nPseudo Genes (internal stop) :: 16 of 56\nPseudo Genes (multiple problems) :: 9 of 56\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 7030
topology: circular
so has quality: SO_0000988
location: 1..7030
location: region:1-7030:1
RO_0002162: 375175

NZ_CP014880
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN04505727
type: BioSample
SIO_000068: biosample

1
title: Pediococcus and Lactobacillus from brewery environment - whole genome sequencing and assembly
author: Behr, J.
author: Geissler, A.J.
author: Vogel, R.F.
journal: Unpublished

2
title: Direct Submission
author: Behr, J.
author: Geissler, A.J.
author: Vogel, R.F.
journal: Submitted (18-MAR-2016) Technische Mikrobiologie, Technische Universitaet Muenchen, Gregor-Mendel-Strasse 4, Freising, Bavaria 85354, Germany

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7030:1
position: 7030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-7030:1:source
so part of: sequence
organism: Loigolactobacillus backii
mol type: genomic DNA
strain: TMW 1.1989
isolation source: beer
plasmid: pL11989-7
country: Germany

375175
type: Taxonomy
SIO_000068: taxonomy

AYR53_RS13200
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13200
old locus tag: AYR53_13195
so part of: sequence
location: complement(328..1413)
location: region:328-1413:-1
so has part: feature:328-1413:-1:exon
subclass of: SO_0000010

42983210
type: Gene
SIO_000068: ncbigene

position:328:-1
position: 328
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1413:-1
position: 1413
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:328-1413:-1:exon

AYR53_RS13200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13200
old locus tag: AYR53_13195
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004906452.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobV family relaxase
translation: MSFAVARMTKIKADNLVGIGNHDQRKTTNHSNEDIDVSRSHLNYDLVAGRTDNFKTDIEAYINENKASKRAVRKDAVLVNEWIITSDKDFFEQLDEAETRKYFETAKQYFADNYGDENIRYAVVHMDEKTPHMHMGIVPFDDGKKLSAKRIFNREALQHIQEELPQYLKENGFAVQRGNKNKERKNLSVPEYKAMREELKKIETEKQETQAKLADTKKQLDEIKPRDTKKIASKPTLMNKNKVTVDKSDLADLEQRAVTSDAYNFEKIHLEVENHSLRNDLSEAKGRNYELKKENERLQKLVGTLQGIIRNVDEFLYKKLGINLPEKWLERAGLKVSSKKAPESSQKLDRHKSDELGGPHL
SIO_010081: AYR53_RS13200
subclass of: SO_0000673
so part of: AYR53_RS13200
location: complement(328..1413)
location: region:328-1413:-1
so has part: feature:328-1413:-1:exon

WP_068281359.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:328-1413:-1:exon

AYR53_RS13205
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13205
old locus tag: AYR53_13200
so part of: sequence
location: complement(2085..2411)
location: region:2085-2411:-1
so has part: feature:2085-2411:-1:exon
subclass of: SO_0000010

42983211
type: Gene
SIO_000068: ncbigene

position:2085:-1
position: 2085
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2411:-1
position: 2411
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2085-2411:-1:exon

AYR53_RS13205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13205
old locus tag: AYR53_13200
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015474710.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: bacteriocin immunity protein
translation: MSFFKNNTKRIPTEVKLLTDIQNALADAPTTEEKPFLLEAEQSLKNKKYLPKILSDLQFFLTPLAIKSALSPKVKVIYLNLISDKYQTSTTGSGIGMIFGGFSGFGGR
SIO_010081: AYR53_RS13205
subclass of: SO_0000673
so part of: AYR53_RS13205
location: complement(2085..2411)
location: region:2085-2411:-1
so has part: feature:2085-2411:-1:exon

WP_046870862.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2085-2411:-1:exon

AYR53_RS13210
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13210
old locus tag: AYR53_13205
so part of: sequence
location: complement(2463..3119)
location: region:2463-3119:-1
so has part: feature:2463-3119:-1:exon
subclass of: SO_0000010

42983212
type: Gene
SIO_000068: ncbigene

position:2463:-1
position: 2463
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3119:-1
position: 3119
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2463-3119:-1:exon

AYR53_RS13210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13210
old locus tag: AYR53_13205
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010008895.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication protein
translation: MKSESKIDWTVPRPNKNPKTKQPYKRGRNWGIVVYPESLPENWKDIIRQEPIAVSPLHDKDVNPDGKKKKSHYHLVLNYKGNKSFEQIDEIARSLRAPAPQRISSLTGAVRYLTHMDNPEKYQYDNADIETFGGFDLESCLALSTGDKRQALRDMLAFISENEIMHLKDFADYCMSEEAPAGWFELLTERNTLFIKEYIKSNWQKQQYASNNINKMSD
SIO_010081: AYR53_RS13210
subclass of: SO_0000673
so part of: AYR53_RS13210
location: complement(2463..3119)
location: region:2463-3119:-1
so has part: feature:2463-3119:-1:exon

WP_068281360.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2463-3119:-1:exon

AYR53_RS13215
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13215
old locus tag: AYR53_13210
so part of: sequence
location: complement(3176..3334)
location: region:3176-3334:-1
so has part: feature:3176-3334:-1:exon
subclass of: SO_0000010

42983213
type: Gene
SIO_000068: ncbigene

position:3176:-1
position: 3176
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3334:-1
position: 3334
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3176-3334:-1:exon

AYR53_RS13215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13215
old locus tag: AYR53_13210
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016176882.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: protein repA
translation: MVEVEKKKITLSIPVETNGKLEELAQKYGMTKSGLVNFLVNQVAEAGTIYRQ
SIO_010081: AYR53_RS13215
subclass of: SO_0000673
so part of: AYR53_RS13215
location: complement(3176..3334)
location: region:3176-3334:-1
so has part: feature:3176-3334:-1:exon

WP_068281361.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3176-3334:-1:exon

AYR53_RS13220
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13220
old locus tag: AYR53_13215
so part of: sequence
location: complement(3868..4953)
location: region:3868-4953:-1
so has part: feature:3868-4953:-1:exon
subclass of: SO_0000010

42983214
type: Gene
SIO_000068: ncbigene

position:3868:-1
position: 3868
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4953:-1
position: 4953
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3868-4953:-1:exon

AYR53_RS13220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13220
old locus tag: AYR53_13215
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004906452.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobV family relaxase
translation: MSFAVARMTKIKADNLVGIGNHDQRKTTNHSNEDIDVSRSHLNYDLVAGRTDNFKTDIEAYINENKASKRAVRKDAVLVNEWIITSDKDFFEQLDEAETRKYFETAKQYFADNYGDENIRYAVVHMDEKTPHMHMGIVPFDDGKKLSAKRIFNREALQHIQEELPQYLKENGFAVQRGNKNKERKNLSVPEYKAMREELKKIETEKQETQAKLADTKKQLDEIKPRDTKKIASKPTLMNKNKVTVDKSDLADLEQRAVTSDAYNFEKIHLEVENHSLRNDLSEAKGRNYELKKENERLQKLVGTLQGIIRNVDEFLYKKLGINLPEKWLERAGLKVSSKKAPESSQKLDRHKSDELGGPHL
SIO_010081: AYR53_RS13220
subclass of: SO_0000673
so part of: AYR53_RS13220
location: complement(3868..4953)
location: region:3868-4953:-1
so has part: feature:3868-4953:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3868-4953:-1:exon

AYR53_RS13225
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13225
old locus tag: AYR53_13220
so part of: sequence
location: complement(5497..5838)
location: region:5497-5838:-1
so has part: feature:5497-5838:-1:exon
subclass of: SO_0000010

42983215
type: Gene
SIO_000068: ncbigene

position:5497:-1
position: 5497
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5838:-1
position: 5838
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5497-5838:-1:exon

AYR53_RS13225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13225
old locus tag: AYR53_13220
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDEKQKKLSLLIDRAYKKADATKFNALRQNLLIYQQDLDSDTSYTDILKSLQYDLFNADKTLPFGKRISGLPIELVQLAEYVNSQLQESNVSNKLNFWGNLRNTLSRISFYTH
SIO_010081: AYR53_RS13225
subclass of: SO_0000673
so part of: AYR53_RS13225
location: complement(5497..5838)
location: region:5497-5838:-1
so has part: feature:5497-5838:-1:exon

WP_068281362.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5497-5838:-1:exon

AYR53_RS13230
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13230
old locus tag: AYR53_13225
so part of: sequence
location: complement(5950..6705)
location: region:5950-6705:-1
so has part: feature:5950-6705:-1:exon
subclass of: SO_0000010

42983216
type: Gene
SIO_000068: ncbigene

position:5950:-1
position: 5950
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6705:-1
position: 6705
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5950-6705:-1:exon

AYR53_RS13230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13230
old locus tag: AYR53_13225
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016511792.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MSTSKKAVLAIENLLSRQEYMVYQGNDLAKAFGGLSSFEQRVLDYCFSFVKKEDKAREVYEVTALEIIKHFGLNTSGQNYQRIAAAFKRLNENTALYLPVRRDDGTRGIRLTQLFSMIDFYVDGAVRFRFSEDAAPLVFGLTKNFYSFHLWELSRIKGKYTLILLKLWEAKRSGNEVRTTIEAPVSEWQSWFLGTDKKVSNSRFYTSILNRAMEELELKLNIDCFLTSLKSGRKIVSYRLEILDKSKLVNS
SIO_010081: AYR53_RS13230
subclass of: SO_0000673
so part of: AYR53_RS13230
location: complement(5950..6705)
location: region:5950-6705:-1
so has part: feature:5950-6705:-1:exon

WP_068281363.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5950-6705:-1:exon