Loigolactobacillus backii strain TMW 1.1989 plasmid pL11989-6, complete sequence.
type: Entry
definition: Loigolactobacillus backii strain TMW 1.1989 plasmid pL11989-6, complete sequence.
sequence version: NZ_CP014879.1
sequence date: 2023-02-06
sequence: sequence
division: CON
label: NZ_CP014879.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN04505727
keyword: RefSeq
source: Loigolactobacillus backii
organism: Loigolactobacillus backii
taxonomy: Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Loigolactobacillus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP014879.1.\nSource DNA or bacteria available from the culture collection of the\nTechnische Mikrobiologie Weihenstephan upon request and only if\npermitted by a potential cooperation partner. Individual decisions.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Celera Assembler v. 1\nAssembly Name :: Lbackii11989-1\nLong Assembly Name :: Lactobacillus backii TMW 1.1989 1\nGenome Coverage :: 89\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/05/2023 23:00:11\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,668\nCDSs (total) :: 2,582\nGenes (coding) :: 2,526\nCDSs (with protein) :: 2,526\nGenes (RNA) :: 86\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 67\nncRNAs :: 4\nPseudo Genes (total) :: 56\nCDSs (without protein) :: 56\nPseudo Genes (ambiguous residues) :: 0 of 56\nPseudo Genes (frameshifted) :: 13 of 56\nPseudo Genes (incomplete) :: 36 of 56\nPseudo Genes (internal stop) :: 16 of 56\nPseudo Genes (multiple problems) :: 9 of 56\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 12076
topology: circular
so has quality: SO_0000988
location: 1..12076
location: region:1-12076:1
RO_0002162: 375175

NZ_CP014879
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN04505727
type: BioSample
SIO_000068: biosample

1
title: Pediococcus and Lactobacillus from brewery environment - whole genome sequencing and assembly
author: Behr, J.
author: Geissler, A.J.
author: Vogel, R.F.
journal: Unpublished

2
title: Direct Submission
author: Behr, J.
author: Geissler, A.J.
author: Vogel, R.F.
journal: Submitted (18-MAR-2016) Technische Mikrobiologie, Technische Universitaet Muenchen, Gregor-Mendel-Strasse 4, Freising, Bavaria 85354, Germany

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12076:1
position: 12076
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-12076:1:source
so part of: sequence
organism: Loigolactobacillus backii
mol type: genomic DNA
strain: TMW 1.1989
isolation source: beer
plasmid: pL11989-6
country: Germany

375175
type: Taxonomy
SIO_000068: taxonomy

AYR53_RS13150
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13150
old locus tag: AYR53_13145
so part of: sequence
location: join(7857..12076,1..505)
location: region:1-12076:1
so has part: feature:7857-12076:1:exon
so has part: feature:1-505:1:exon
subclass of: SO_0000010

42983200
type: Gene
SIO_000068: ncbigene

urn:…
SIO_000300: 1
SIO_000628: feature:7857-12076:1:exon

position:7857:1
position: 7857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-505:1:exon

position:505:1
position: 505
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

AYR53_RS13150
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13150
old locus tag: AYR53_13145
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014335297.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DEAD/DEAH box helicase
translation: MNTHTFNDLIKQINQAAGDVQRERGTLFEKLVLAYLKHEPTYKALYQNVWLLSDVPDDYGISKKDTGVDLVAEQKNGDLVAIQAKFYTHKVGKDSINSFVAELGKSYYQHGLIVSTVDEWNINARETIEQNEKGIEIIGLSDLRNSQIDWSQFNFERPEKVTIKKPKQLRDYQQTAKENALNHFKEHDRGQLIMAPGTGKTFTSLKIAEALAKAQSTPFKVLYLVPSIQLLTQTLRGWNNDTELTMTSMAVTSDRDASRGTDGNEDIKAADIGYPATTSSQKILQNWRDFEEGQPTDMVVIFSTYQSIDVIGEAQKKGLPEFDFIISDEAHRTTGAHESTKEASIFAKVHSNRNVQGLKRMYQTATPKIFGESAKRNAKEKSILLASMDDESKYGAVFFRMGFGQAVSHGILTDYKVMVLAVDEAAIQKDMQRTLADPENGLNIDDVGRIVGIWNGMMRRNGYKNPVKNSPYDGAPLERAIAFTRTIEESKKVSDQFEDVVNDYIGNAVDEQSVHLSMRHADGQMNALQKGEILDWLANPNKPADEARIVSNVRFLTEGIDIPTLDAVIFLSPKKSQVDIVQAVGRIMRKAEGKDYGYIILPIVIPTDETPETILDNNKNYETVWQVINALRSVDERFEAMIDKLNMAKPKQLKVIGVGSAPDQMNDRESNTDIANPVSVQTELNLEWDKFEGAIFGKIVQKVGDRKYLENWSQDVAKIAERQISWIKNKLSDKKDPISLEFKKFVSSLQHNINQSIDENQAAEMLSQHLITKPIFEALFEEYSFVNQNPVSQAMESIVSELEKAGFAKEQENLEPLYESVRMRAEGIEKAEDKQKIIVTLYDKFFKTAFKSTTERLGIVFTPIEVVDFIVHSVDDVLKKHFDKSLASKNVHILDPFTGTGTFIVRTLTYLKEQMDAGKISLADITRKFTQELHANEIVLLSYYIAAINIEATFNEISGKEEGYVPFEGIVLTDTFESTETEDTDTLDDDYFGTNDERLKRQQEVPITAIIGNPPYSVGQNSENDNNQNLHYPKLEERISSTYTADSTAKLKQALYDSYVEAFRWASDRIGDRGVIAFVSNGAFVDNQSFDGFRKNLYTDFNHLYIYNLRGDQRTQGERSRREGGKIFGSGSRTPISISVLVKDGTDNHQLHYKDIGDYLSREDKLEILNSNSSIEGLEWLEILPDKNNDWINQRDSNYEIYPSVSDGTQNEIFNNYTLGVQTGRDWWTIGFSRDNTLKNANRMIDNYNSEVGRVSGQSDSLDNINMDPTFINWSDVLKKKLVRNEKIEVDENMMVITAFRPFTKKWMYYDSSIIHRVRQYKELGDFGRLIFTTGTGVSRDFSALVTTFIPNYHYLDTGRALFESKESELLGNVQQVTNISEYAQRMFNLSTDDMFYYVYAVLNSPAYKEKYANNLNKELARIPKLKDADEYVRIGKELIDLHLNYENQNPLDSVEVVESTSNYTVKKMKFKKVKVGGKSVNDRSTIIYNESIVIRNIPERSYEYVVNGRPAIEWIIDQYQVKKDNKSGIVDDPNYFSDNPKYILNLLLSVITVSMRTLELIDELPEFELLEKE
SIO_010081: AYR53_RS13150
subclass of: SO_0000673
so part of: AYR53_RS13150
location: join(7857..12076,1..505)
location: region:1-12076:1
so has part: feature:7857-12076:1:exon
so has part: feature:1-505:1:exon

WP_068281353.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7857-12076:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-505:1:exon

AYR53_RS13155
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13155
old locus tag: AYR53_13150
so part of: sequence
location: 512..715
location: region:512-715:1
so has part: feature:512-715:1:exon
subclass of: SO_0000010

42983201
type: Gene
SIO_000068: ncbigene

position:512:1
position: 512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:715:1
position: 715
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:512-715:1:exon

AYR53_RS13155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13155
old locus tag: AYR53_13150
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDETLLTLNTAFAKAITEVTVEKVTNKITQIKSNHDLKKQVTDYEQLVNDLLDNKNKFPRLQSKCNT
SIO_010081: AYR53_RS13155
subclass of: SO_0000673
so part of: AYR53_RS13155
location: 512..715
location: region:512-715:1
so has part: feature:512-715:1:exon

WP_068281354.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:512-715:1:exon

AYR53_RS13160
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13160
old locus tag: AYR53_13155
so part of: sequence
location: 784..1800
location: region:784-1800:1
so has part: feature:784-1800:1:exon
subclass of: SO_0000010

42983202
type: Gene
SIO_000068: ncbigene

position:784:1
position: 784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1800:1
position: 1800
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:784-1800:1:exon

AYR53_RS13160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13160
old locus tag: AYR53_13155
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003581316.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS30 family transposase
translation: MTNIKRTISKAYQQLSNFDRVRIETLLNQGFSQARIARELNRSRSTISREITRGSVLQRIPGHKVALIYFADTAAYLHAQRRERCRPKTMLEKNPEFYAACAAAIKQRPRVHSVDSFVHTFKREHADEVVPSTPTVYRDIEAGRFELRTHDLPRKPSLRIKRSHSHTRTNKTKLGTSIDERPIEVQDRRQGGHWEGDLVKGKRVDSEPALLVLTERTSRFEIIIKLANYKASTCKVGLQSIIDDYGAEYFTTITFDNGSEFAQLDSVEGTDVYFAHPYSPWERGTNENQNGLLREFIPKGRSLHHYDIIDIQSFQDALNSRPRRILGYRSAAELMPEL
SIO_010081: AYR53_RS13160
subclass of: SO_0000673
so part of: AYR53_RS13160
location: 784..1800
location: region:784-1800:1
so has part: feature:784-1800:1:exon

WP_053359659.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:784-1800:1:exon

AYR53_RS13165
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13165
old locus tag: AYR53_13160
so part of: sequence
location: 1847..2164
location: region:1847-2164:1
so has part: feature:1847-2164:1:exon
subclass of: SO_0000010

42983203
type: Gene
SIO_000068: ncbigene

position:1847:1
position: 1847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2164:1
position: 2164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1847-2164:1:exon

AYR53_RS13165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13165
old locus tag: AYR53_13160
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTIRDKNKLELTARNYKERLEQVTISDSDIESLHNTVSTVLKIIKPLSQSGEQEDEKSIDIVLDLLNSDTLKTLQLLGYNYKKAIGEPLTQMTAEFLKAKLDTKK
SIO_010081: AYR53_RS13165
subclass of: SO_0000673
so part of: AYR53_RS13165
location: 1847..2164
location: region:1847-2164:1
so has part: feature:1847-2164:1:exon

WP_156520662.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1847-2164:1:exon

AYR53_RS13170
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13170
old locus tag: AYR53_13165
so part of: sequence
location: complement(2274..2618)
location: region:2274-2618:-1
so has part: feature:2274-2618:-1:exon
subclass of: SO_0000010

42983204
type: Gene
SIO_000068: ncbigene

position:2274:-1
position: 2274
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2618:-1
position: 2618
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2274-2618:-1:exon

AYR53_RS13170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13170
old locus tag: AYR53_13165
EC number: 3.1.-.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011241744.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system PemK/MazF family toxin
translation: MVSQGDIFYVNFNPSRGHEQMNKRPAIALSNDLVCQTSNMTIVAPISSTKRNFPMYHRLTSSQTVYGKVLLDQTIALDLRARHVTDETIVDHVSREELEEIITLYKLLFSIDDK
SIO_010081: AYR53_RS13170
subclass of: SO_0000673
so part of: AYR53_RS13170
location: complement(2274..2618)
location: region:2274-2618:-1
so has part: feature:2274-2618:-1:exon

WP_001748110.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2274-2618:-1:exon

AYR53_RS13175
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13175
old locus tag: AYR53_13170
so part of: sequence
location: complement(2612..2875)
location: region:2612-2875:-1
so has part: feature:2612-2875:-1:exon
subclass of: SO_0000010

42983205
type: Gene
SIO_000068: ncbigene

position:2612:-1
position: 2612
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2875:-1
position: 2875
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2612-2875:-1:exon

AYR53_RS13175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13175
old locus tag: AYR53_13170
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003715897.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AbrB/MazE/SpoVT family DNA-binding domain-containing protein
translation: MELIKEQTRLAKWGNSKAARIPSQIIKQLKLDDNQDMTITIENGSIVLTPIKKNPTNIHELFKDWKDDGKRDHELDWGKSEGNELQW
SIO_010081: AYR53_RS13175
subclass of: SO_0000673
so part of: AYR53_RS13175
location: complement(2612..2875)
location: region:2612-2875:-1
so has part: feature:2612-2875:-1:exon

WP_003643337.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2612-2875:-1:exon

AYR53_RS13180
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13180
old locus tag: AYR53_13175
so part of: sequence
location: 2961..3548
location: region:2961-3548:1
so has part: feature:2961-3548:1:exon
subclass of: SO_0000010

42983206
type: Gene
SIO_000068: ncbigene

position:2961:1
position: 2961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3548:1
position: 3548
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2961-3548:1:exon

AYR53_RS13180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13180
old locus tag: AYR53_13175
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005917937.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MQQVVLPIKDSNVLKEVQDTLLNNFKAGRRNYTIFQVGKATLLRVSDVMGLKQTDIFNPDGSIKQNAFIHDRKTGKPNTLYLKPVQTELLLYRQWLLDHRLASEWLFPSIQHPERHITEKQFYKIMSKVGDLLGINYLGTHTMRKTGAYRVYTQSNYNIGLVMHLLNHSSEAMTLAYLGLDQASTESMLDQIDFG
SIO_010081: AYR53_RS13180
subclass of: SO_0000673
so part of: AYR53_RS13180
location: 2961..3548
location: region:2961-3548:1
so has part: feature:2961-3548:1:exon

WP_068281356.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2961-3548:1:exon

AYR53_RS13185
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13185
old locus tag: AYR53_13180
so part of: sequence
location: complement(3830..5188)
location: region:3830-5188:-1
so has part: feature:3830-5188:-1:exon
subclass of: SO_0000010

42983207
type: Gene
SIO_000068: ncbigene

position:3830:-1
position: 3830
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5188:-1
position: 5188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3830-5188:-1:exon

AYR53_RS13185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13185
old locus tag: AYR53_13180
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003686724.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transposase
translation: MNIIRQKNTENELHNIVHQFTSLIGLSKLTKLVNYRRHSEISLMKVIEWLLTTKFLGRSLYRAHETPNFTSRTVRNNLNDGRINWQRLICQVGSHLIKHLRPFIDRRRRLALIIDDTLFSREYATQTELLARVFDHDKQLYIKGYRALTLGWSDANTFLPINFALMSSKKPQNVLGKSAKTTDQRTIAGRRRRQAQQKMNLVSLQLVKQALANGVLADYVLFDSWYSSPKMFYELTKLGLNGVGMLKRSSKIYYQYRGRQYSVKALYKRLQASKYQPKQAYQYSCFVEAHVGNQKFKLRLVFVANRARQDDYLVLATTQLGLQPQEIIQLYARRWQIENYFKVAKQYLRLDKSQVQNYDGLCGHLAIVMMTYDLLAWQERQNQDDRTIGDLFFIMNEAMPDIELSQALVWLLNSLKTIINHEVYARRAQIIQMMNQFFTFLPKRLVSLLTAS
SIO_010081: AYR53_RS13185
subclass of: SO_0000673
so part of: AYR53_RS13185
location: complement(3830..5188)
location: region:3830-5188:-1
so has part: feature:3830-5188:-1:exon

WP_056973869.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3830-5188:-1:exon

AYR53_RS13190
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13190
old locus tag: AYR53_13185
so part of: sequence
location: 6423..7352
location: region:6423-7352:1
so has part: feature:6423-7352:1:exon
subclass of: SO_0000010

42983208
type: Gene
SIO_000068: ncbigene

position:6423:1
position: 6423
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7352:1
position: 7352
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6423-7352:1:exon

AYR53_RS13190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13190
old locus tag: AYR53_13185
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016526818.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MSNEIVKYDPELNTIPLRKFTPVEMNLFFSIVSRMRDKGDETVRFSFDQLKELSAYKPTANNRFIDDIESTYQKILGLRFGRRSKDGLNREFFVMFTEFEINGHADDPYVDIKIYPKAIKLLNELESWVRYALSEFRDLKSSYAKTMFRLLKQFRTTGYAYFSVADFNELLDVPKSYKSSNINQSVLKPIKEELTPLFRGLTVRKKYGKGRGKPVIGYSFTWKPEKKDANDFSQGQFQDERQKLFNIQHNGELTEQEKWRAIDKVKGLTLGSTEKQALADKQAEHDKKIRDQARKEALAELRKGFGNNA
SIO_010081: AYR53_RS13190
subclass of: SO_0000673
so part of: AYR53_RS13190
location: 6423..7352
location: region:6423-7352:1
so has part: feature:6423-7352:1:exon

WP_068281357.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6423-7352:1:exon

AYR53_RS13195
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13195
old locus tag: AYR53_13190
so part of: sequence
location: 7345..7857
location: region:7345-7857:1
so has part: feature:7345-7857:1:exon
subclass of: SO_0000010

42983209
type: Gene
SIO_000068: ncbigene

position:7345:1
position: 7345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7345-7857:1:exon

AYR53_RS13195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13195
old locus tag: AYR53_13190
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002816266.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MPKTIRELADELGVSKQRIQQIIAKLSPSKTPNKEGNRYVLNAQDVKNIKALMGFENNKSSTSESTNRLVDYDVYLDVIDSIKEKDEQIKSLLEVQKQTQNLLDQQQRLALQDKKLLEEYRTEINDLKSSNMLTQDSEKDDSIQPGASVKNIKELPQKQNKKWWHFGRRI
SIO_010081: AYR53_RS13195
subclass of: SO_0000673
so part of: AYR53_RS13195
location: 7345..7857
location: region:7345-7857:1
so has part: feature:7345-7857:1:exon

WP_068281358.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7345-7857:1:exon