Loigolactobacillus backii strain TMW 1.1989 plasmid pL11989-5, complete sequence.
type: Entry
definition: Loigolactobacillus backii strain TMW 1.1989 plasmid pL11989-5, complete sequence.
sequence version: NZ_CP014878.1
sequence date: 2023-02-06
sequence: sequence
division: CON
label: NZ_CP014878.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN04505727
keyword: RefSeq
source: Loigolactobacillus backii
organism: Loigolactobacillus backii
taxonomy: Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Loigolactobacillus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP014878.1.\nSource DNA or bacteria available from the culture collection of the\nTechnische Mikrobiologie Weihenstephan upon request and only if\npermitted by a potential cooperation partner. Individual decisions.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Celera Assembler v. 1\nAssembly Name :: Lbackii11989-1\nLong Assembly Name :: Lactobacillus backii TMW 1.1989 1\nGenome Coverage :: 89\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/05/2023 23:00:11\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,668\nCDSs (total) :: 2,582\nGenes (coding) :: 2,526\nCDSs (with protein) :: 2,526\nGenes (RNA) :: 86\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 67\nncRNAs :: 4\nPseudo Genes (total) :: 56\nCDSs (without protein) :: 56\nPseudo Genes (ambiguous residues) :: 0 of 56\nPseudo Genes (frameshifted) :: 13 of 56\nPseudo Genes (incomplete) :: 36 of 56\nPseudo Genes (internal stop) :: 16 of 56\nPseudo Genes (multiple problems) :: 9 of 56\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 31925
topology: circular
so has quality: SO_0000988
location: 1..31925
location: region:1-31925:1
RO_0002162: 375175

NZ_CP014878
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN04505727
type: BioSample
SIO_000068: biosample

1
title: Pediococcus and Lactobacillus from brewery environment - whole genome sequencing and assembly
author: Behr, J.
author: Geissler, A.J.
author: Vogel, R.F.
journal: Unpublished

2
title: Direct Submission
author: Behr, J.
author: Geissler, A.J.
author: Vogel, R.F.
journal: Submitted (18-MAR-2016) Technische Mikrobiologie, Technische Universitaet Muenchen, Gregor-Mendel-Strasse 4, Freising, Bavaria 85354, Germany

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31925:1
position: 31925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-31925:1:source
so part of: sequence
organism: Loigolactobacillus backii
mol type: genomic DNA
strain: TMW 1.1989
isolation source: beer
plasmid: pL11989-5
country: Germany

375175
type: Taxonomy
SIO_000068: taxonomy

AYR53_RS13830
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13830
so part of: sequence
location: join(31765..31925,1..5740)
location: region:1-31925:1
so has part: feature:31765-31925:1:exon
so has part: feature:1-5740:1:exon
subclass of: SO_0000010

77610034
type: Gene
SIO_000068: ncbigene

urn:…
SIO_000300: 1
SIO_000628: feature:31765-31925:1:exon

position:31765:1
position: 31765
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-5740:1:exon

position:5740:1
position: 5740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

AYR53_RS13830
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13830
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
GO component: GO:0009986 - cell surface [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: LPXTG cell wall anchor domain-containing protein
translation: MLNQQYCSKQCSDTKSAAQSAATVASSASDTKSATQSAATVASSASDTKRAAQSAATVASSASDTKSAAQSAATVASSASDTKSATQSAATAASSASDTKRAAQSAATAVSSASDTKSAAQSAATAVSSASDTKSAAQSAATAASSASDTKRAAQSAATAVSSASDTKSAAQSAATAVSSASDTKSAAQSAATAASSASDTNSFVQLMADNATAAYNSTPIDDATSTGFSVSDPDYPSGMWIDPDNSHYSYEWLQAKYGGNQIVFSTNRTGDGIVYVTELSALNKVLKQYTLNQNTQVTSAVFDSTTYYNDAYFEMVQSSNNSFVTKYNASKFDNNYYNTLSYFVPKLITQTTYYVDKDGKQITDSNGNPVAAYTQKGLVGQNYTTSDVTVVNGYYSIAPANSNGVMSPYGKIGASYVKNFHDGVVITYTQTGSDGTMSASIAQNGSVLETWTSIKPSDPTIMKKLGYTTYGIKNPYIPQTSDIKYVYNKLGNWIVYNPDGSTTSRIYPNDPSNPTKIADSSVPDYPVIAFIPGYILEDHMGTPLVPVDLDDHTKGYIPPTPSDNGTDTTITYTADKQKGSVSYVDDTTVKTLKTDSISGTTGSKSSYSTSGNIADYKKQGYALVTDGYPADLTFDNDDTTDQNFTVHLKHQLTPVNPTDPQTPGAPINPDDPDSPKWPISTNYDKTVNETVSYVDQNGHVVAKQHTDSVNFTRTVVVDNVTGEVITSGAGTTAWTATNGDTTFDAVVSPVVPGSVADKAQTAAVTGLNADSADVNETVTYTKVGSLVPSSSDGNFPGAPTVVYPNDPSDATKVTPAGVPTVPGYTAHDPEGHVLTPGSSYQPSDPTKDTTITYTADKQKGSVSYVDDTTVKTLKTDSISGTTGSKSSYSTSGNIADYKKQGYALVTDGYPADLTFDNDDTTDQNFTVHLKHQLTPVNPTDPQTPGAPINPDDPDSPKWPISTNYDKTVNETVSYVDQNGHVVAKQHTDSVNFTRTVVVDNVTGEVITSGAGTTAWTATNGDTTFDAVVSPVVPGSVADKAQTAAVTDLNADSADVNETVTYTKVGSLVPSSSDGNFPGAPTVVYPNDPSDATKVTPAGVPTVPGYTAHDPEGHVLTPGSSYQPSDPTKDTTITYTADKQKGSVSYVDDTTVKTLKTDSISGTTGSKSSYSTSGNIADYKKQGYALVTDGYPADLTFDNDDTTDQNFTVHLKHQLTPVNPTDPQTPGAPINPDDPDSPKWPISTNYDKTVNETVSYVDQNGHVVAKQHTDSVNFTRTVVVDNVTGEVITSGAGTTAWTATNGDTTFDAVVSPVVPGSVADKAQTAAVTGLNADSADVNETVTYTKVGSLVPSSSDGNFPGAPTVVYPNDPSDATKVTPAGVPTVPGYTAHDPEGHVLTPGSSYQPSDPTKDTTITYTADKQKGSVSYVDDTTVKTLKTDSISGTTGSKSSYSTSGNIADYKKQGYALVTDGYPADLTFDNDDTTDQNFTVHLKHQLTPVNPTDPQTPGAPINPDDPDSPKWPISTNYDKTVNETVSYVDQNGHVVAKQHTDSVNFTRTVVVDNVTGEVITSGAGTTAWTATNGDTTFDAVVSPVVPGSVADKAQTAAVTDLNADSADVNETVTYTKVGSLVPSSSDGNFPGAPTVVYPNDPSDATKVTPAGVPTVPGYTAHDPEGHVLTPGSSYQPSDPTKDTTITYTADKQKGSVSYVDDTTVKTLKTDSISGTTGSKSSYSTSGNIADYKKQGYALVTDGYPADLTFDNDDTTDQNFTVHLKHQNIQSTEAKTVTETIHYQGAGNQTPADNTAQVTFTRQVSTDTVTGEKTYGSWSADQSFAAVTSPVIKGYTPDQAEIGAQTVSGDASDLDFTVIYTKDAPTKPVNPSQPTTPAKPVNPSQPTTPAKPVNPSQPTTPAKPVQAGQAAATNFVDQRLPQTGETDQQHMTLSGLLLLAMSSVLGLFGMTKRQRKE
SIO_010081: AYR53_RS13830
subclass of: SO_0000673
so part of: AYR53_RS13830
location: join(31765..31925,1..5740)
location: region:1-31925:1
so has part: feature:31765-31925:1:exon
so has part: feature:1-5740:1:exon

WP_239693285.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31765-31925:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-5740:1:exon

AYR53_RS13020
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13020
old locus tag: AYR53_13015
so part of: sequence
location: 5752..6189
location: region:5752-6189:1
so has part: feature:5752-6189:1:exon
subclass of: SO_0000010

42983176
type: Gene
SIO_000068: ncbigene

position:5752:1
position: 5752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6189:1
position: 6189
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5752-6189:1:exon

AYR53_RS13020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13020
old locus tag: AYR53_13015
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010014573.1
GO function: GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MarR family transcriptional regulator
translation: MLNHRQTKIQFESLATLQAIQKQAYQMLMQGLTTTGFSMRECGILIYLEQHGQATASELADAFIVKRTLIFRNTWRLIQDNLIQSQVNQTDRRIVRLTLTTNGQETVQRSVRQVQANLKTFNQSHDLEKLTKQVETLSQQLAKIN
SIO_010081: AYR53_RS13020
subclass of: SO_0000673
so part of: AYR53_RS13020
location: 5752..6189
location: region:5752-6189:1
so has part: feature:5752-6189:1:exon

WP_068281351.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5752-6189:1:exon

AYR53_RS13435
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13435
pseudo: true
so part of: sequence
location: <6453..6878
location: region:6453-6878:1
so has part: feature:6453-6878:1:exon
subclass of: SO_0000010

42983245
type: Gene
SIO_000068: ncbigene

position:6453:1
position: 6453
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:6878:1
position: 6878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6453-6878:1:exon

AYR53_RS13435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13435
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002827301.1
note: internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: acyltransferase
SIO_010081: AYR53_RS13435
subclass of: SO_0000673
so part of: AYR53_RS13435
location: <6453..6878
location: region:6453-6878:1
so has part: feature:6453-6878:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6453-6878:1:exon

AYR53_RS13035
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13035
old locus tag: AYR53_13030
so part of: sequence
location: 7040..7609
location: region:7040-7609:1
so has part: feature:7040-7609:1:exon
subclass of: SO_0000010

42983177
type: Gene
SIO_000068: ncbigene

position:7040:1
position: 7040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7609:1
position: 7609
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7040-7609:1:exon

AYR53_RS13035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13035
old locus tag: AYR53_13030
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011674065.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MKYGYARVSTTDQKLANQIELLKLAGAEKIFQEKFTGTTTERPEFQKLLRVLKTGDTLIVTKLDRFARNTREALAIIQELFKENVKVNILNMGLIDNTPTGQLVFTIFSAFAQFERDMIVTRTQEGKVYAKQHDPLFREGRPKTYSEEQIRFAYELRKRGMTYKMIERKTGISKRTQQRRFKLVKNNIF
SIO_010081: AYR53_RS13035
subclass of: SO_0000673
so part of: AYR53_RS13035
location: 7040..7609
location: region:7040-7609:1
so has part: feature:7040-7609:1:exon

WP_068281349.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7040-7609:1:exon

AYR53_RS13440
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13440
so part of: sequence
location: complement(7704..7868)
location: region:7704-7868:-1
so has part: feature:7704-7868:-1:exon
subclass of: SO_0000010

42983246
type: Gene
SIO_000068: ncbigene

position:7704:-1
position: 7704
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7868:-1
position: 7868
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7704-7868:-1:exon

AYR53_RS13440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13440
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011674067.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MFS transporter
translation: MAQKEALTTALRKIKHTKNRQISQAFSHTYLVGAVIVLILSPIDLLTDRKPLKS
SIO_010081: AYR53_RS13440
subclass of: SO_0000673
so part of: AYR53_RS13440
location: complement(7704..7868)
location: region:7704-7868:-1
so has part: feature:7704-7868:-1:exon

WP_145912972.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7704-7868:-1:exon

AYR53_RS13040
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13040
old locus tag: AYR53_13035
so part of: sequence
location: complement(8477..8824)
location: region:8477-8824:-1
so has part: feature:8477-8824:-1:exon
subclass of: SO_0000010

42983178
type: Gene
SIO_000068: ncbigene

position:8477:-1
position: 8477
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8824:-1
position: 8824
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8477-8824:-1:exon

AYR53_RS13040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13040
old locus tag: AYR53_13035
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020090523.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF5388 domain-containing protein
translation: MGGLLKHGNDNQVKSPDKKVNVNVSSISRKQAGFGEDSAEKIPTFDVNMRVDNHTRNAVLALSKATADKRSASEMVSLMIESYLESLTPQTRDTYDELVSMMETKDKLDYKLKSK
SIO_010081: AYR53_RS13040
subclass of: SO_0000673
so part of: AYR53_RS13040
location: complement(8477..8824)
location: region:8477-8824:-1
so has part: feature:8477-8824:-1:exon

WP_062904338.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8477-8824:-1:exon

AYR53_RS13045
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13045
old locus tag: AYR53_13040
so part of: sequence
location: complement(8826..9626)
location: region:8826-9626:-1
so has part: feature:8826-9626:-1:exon
subclass of: SO_0000010

42983179
type: Gene
SIO_000068: ncbigene

position:8826:-1
position: 8826
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9626:-1
position: 9626
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8826-9626:-1:exon

AYR53_RS13045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13045
old locus tag: AYR53_13040
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004562667.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MIISCANEKGGTGKTSTTALISWELSNMGYKVLMVDCDPQANLTDLMIKTKSHENSSITIDPSLFALLINGKDLNDGIINIKNGLDLIPAAADMNLFSRWVDKQDIDEKAKVSYLKNSLSNISSKFDFVFLDVSPTMSLTNDNVFMCCDWIIVMLQTQQRALLGAKSFLSYLQTNLIDEFGAKVDVAGILPVLTKGQSIIDNAVLKQAVEEFGEDSIFENVITAMERVKRYDLTGITESSRSVWDKATHSTYTAVATELISRLEAE
SIO_010081: AYR53_RS13045
subclass of: SO_0000673
so part of: AYR53_RS13045
location: complement(8826..9626)
location: region:8826-9626:-1
so has part: feature:8826-9626:-1:exon

WP_062904339.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8826-9626:-1:exon

AYR53_RS13050
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13050
old locus tag: AYR53_13045
so part of: sequence
location: 10534..10761
location: region:10534-10761:1
so has part: feature:10534-10761:1:exon
subclass of: SO_0000010

42983180
type: Gene
SIO_000068: ncbigene

position:10534:1
position: 10534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10761:1
position: 10761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10534-10761:1:exon

AYR53_RS13050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13050
old locus tag: AYR53_13045
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016511930.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: BRCT domain-containing protein
translation: MTRDQAFSLAKVFGAKPQNWVTKQTDYLVVGLIETALGEEPITKKLLTGTPTISERDFLDWCQARLAQWSRSLGG
SIO_010081: AYR53_RS13050
subclass of: SO_0000673
so part of: AYR53_RS13050
location: 10534..10761
location: region:10534-10761:1
so has part: feature:10534-10761:1:exon

WP_171284700.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10534-10761:1:exon

AYR53_RS13055
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13055
old locus tag: AYR53_13050
pseudo: true
so part of: sequence
location: <11032..11342
location: region:11032-11342:1
so has part: feature:11032-11342:1:exon
subclass of: SO_0000010

42983181
type: Gene
SIO_000068: ncbigene

position:11032:1
position: 11032
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:11342:1
position: 11342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11032-11342:1:exon

AYR53_RS13055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13055
old locus tag: AYR53_13050
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014386872.1
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: plasmid replication initiation protein
SIO_010081: AYR53_RS13055
subclass of: SO_0000673
so part of: AYR53_RS13055
location: <11032..11342
location: region:11032-11342:1
so has part: feature:11032-11342:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11032-11342:1:exon

AYR53_RS13060
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13060
old locus tag: AYR53_13055
so part of: sequence
location: 11570..11845
location: region:11570-11845:1
so has part: feature:11570-11845:1:exon
subclass of: SO_0000010

42983182
type: Gene
SIO_000068: ncbigene

position:11570:1
position: 11570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11845:1
position: 11845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11570-11845:1:exon

AYR53_RS13060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13060
old locus tag: AYR53_13055
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005693113.1
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelB/DinJ family antitoxin
translation: MVVKEKKRVQVQIDKELADNTEAVLSQLGLNPTTAINMFYKRIVADAALPFKPALSEAERANLSLLKATKETPVTEFKDAKEVADWLNDPD
SIO_010081: AYR53_RS13060
subclass of: SO_0000673
so part of: AYR53_RS13060
location: 11570..11845
location: region:11570-11845:1
so has part: feature:11570-11845:1:exon

WP_068281347.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11570-11845:1:exon

AYR53_RS13065
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13065
old locus tag: AYR53_13060
so part of: sequence
location: 11898..12083
location: region:11898-12083:1
so has part: feature:11898-12083:1:exon
subclass of: SO_0000010

42983183
type: Gene
SIO_000068: ncbigene

position:11898:1
position: 11898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12083:1
position: 12083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11898-12083:1:exon

AYR53_RS13065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13065
old locus tag: AYR53_13060
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010620892.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKDTITINDFFEIAKETDLKDLLDKSLHEPDPEKRKVYDALYTYFLDKRQDEVIKRKDFVR
SIO_010081: AYR53_RS13065
subclass of: SO_0000673
so part of: AYR53_RS13065
location: 11898..12083
location: region:11898-12083:1
so has part: feature:11898-12083:1:exon

WP_010620892.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11898-12083:1:exon

AYR53_RS13070
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13070
old locus tag: AYR53_13065
so part of: sequence
location: 12080..12736
location: region:12080-12736:1
so has part: feature:12080-12736:1:exon
subclass of: SO_0000010

42983184
type: Gene
SIO_000068: ncbigene

position:12080:1
position: 12080
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12736:1
position: 12736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12080-12736:1:exon

AYR53_RS13070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13070
old locus tag: AYR53_13065
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007124583.1
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: zeta toxin family protein
translation: MIDKPQYIIVAGINGAGKSTLYDTFPILFDKTKRINADELLRQMGGDWHKDSDNLKVMKEEIKQLHYALDHQQSIHVETTLAGRGKAHKNGFEVTLLYVALRDENLAIQRVNERVQKGGHGVPVATIKKRYQQSKHNLPLVAFKSDKVMIYDNSEKFTSVYAREKGQVFKNDLRHFPWINQNITYPEKVQKQLQNFADQNPEIKPKNNPENKNDRPSY
SIO_010081: AYR53_RS13070
subclass of: SO_0000673
so part of: AYR53_RS13070
location: 12080..12736
location: region:12080-12736:1
so has part: feature:12080-12736:1:exon

WP_068281346.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12080-12736:1:exon

AYR53_RS13075
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13075
old locus tag: AYR53_13070
so part of: sequence
location: complement(12726..13004)
location: region:12726-13004:-1
so has part: feature:12726-13004:-1:exon
subclass of: SO_0000010

42983185
type: Gene
SIO_000068: ncbigene

position:12726:-1
position: 12726
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13004:-1
position: 13004
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12726-13004:-1:exon

AYR53_RS13075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13075
old locus tag: AYR53_13070
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003603789.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSNQYEKLVEQQARLKQKIEREDFKLRQSKYYESRQDRKARSRRLIQKGALLEKYFQADNLSIEQTEELLKTFANYVNAHKPDKLKNDQPNN
SIO_010081: AYR53_RS13075
subclass of: SO_0000673
so part of: AYR53_RS13075
location: complement(12726..13004)
location: region:12726-13004:-1
so has part: feature:12726-13004:-1:exon

WP_068281345.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12726-13004:-1:exon

AYR53_RS13080
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13080
old locus tag: AYR53_13075
so part of: sequence
location: complement(13027..13254)
location: region:13027-13254:-1
so has part: feature:13027-13254:-1:exon
subclass of: SO_0000010

42983186
type: Gene
SIO_000068: ncbigene

position:13027:-1
position: 13027
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13254:-1
position: 13254
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13027-13254:-1:exon

AYR53_RS13080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13080
old locus tag: AYR53_13075
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012552807.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIGGIVMSQSNLEKQEAKLKALNQKIKDEKNKIEQRLGKQIISQANLDYANLSNDQIKLLAKQFSEFLKVKSVDH
SIO_010081: AYR53_RS13080
subclass of: SO_0000673
so part of: AYR53_RS13080
location: complement(13027..13254)
location: region:13027-13254:-1
so has part: feature:13027-13254:-1:exon

WP_003555660.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13027-13254:-1:exon

AYR53_RS13085
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13085
old locus tag: AYR53_13080
so part of: sequence
location: 13507..15570
location: region:13507-15570:1
so has part: feature:13507-15570:1:exon
subclass of: SO_0000010

42983187
type: Gene
SIO_000068: ncbigene

position:13507:1
position: 13507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15570:1
position: 15570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13507-15570:1:exon

AYR53_RS13085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13085
old locus tag: AYR53_13080
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016511122.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobQ family relaxase
translation: MAIFHMSFSNISAGKGRSAIASAAYRSGEKLFDDQEGRHYFYARSVIPESFILTPKNAPAWASDREKLWNEVERKDRRANSRYAKEFNVALPVELSEDEQKELLTKYVQENFVDQGMVADVAIHRDHQDNPHAHVMLTNRPFNPDGTWGIKSKKQYILDENGNKMYTGTSKYPKSRKILMVDWDKKEKIIEWRHNWAVSVNQVLEQKNIPDRISEKSFTEQGIDDTPTQHEGINSKRYERKEFNQQVKNYRKAKASYKNNQEKAINRGHLDSLSEHFSFNEKRVVNELSHELKTYISLESLDDKRRMLFNWKNSTLIKHAVGEDVTKQLLTINQQESSLKKADELLNKVVDRTTKKLYPELNFEQTTQAERRELIKETESEQTVFKGSELNERLMNIRDDLLTQQLLTFTKRPYVGFKLLMQQEKEAKIDLKYTLMIHSDSLESLEHVDKGLLEKYSPAEQQTITRAVKDLRTIIAVKQVIQTQYHEVLKRAFPNGDLDDLSLVRQEQAYTAVMYYDPTLKPLKVETMAQWQENPPRVFSTQEHQLGLAYLSGQLSLDQLENHHLQRVLKHDGTKQLFLGECKVDPTIKNSQIEKIQKQLKEQQAKDDQYRKSQLAHYQPLNYKPVSPNYYLKTAFSDAIMTVLYARDEDYQRQRQAQGLKETEWEMAKKQRQHQTRNRHEDGGMHL
SIO_010081: AYR53_RS13085
subclass of: SO_0000673
so part of: AYR53_RS13085
location: 13507..15570
location: region:13507-15570:1
so has part: feature:13507-15570:1:exon

WP_068281344.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13507-15570:1:exon

AYR53_RS13090
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
gene: topB
locus tag: AYR53_RS13090
old locus tag: AYR53_13085
so part of: sequence
location: 15667..17802
location: region:15667-17802:1
so has part: feature:15667-17802:1:exon
subclass of: SO_0000010

42983188
type: Gene
SIO_000068: ncbigene

position:15667:1
position: 15667
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17802:1
position: 17802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15667-17802:1:exon

AYR53_RS13090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
gene: topB
locus tag: AYR53_RS13090
old locus tag: AYR53_13085
EC number: 5.6.2.1
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002825295.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0003917 - DNA topoisomerase type I (single strand cut, ATP-independent) activity [Evidence IEA]
GO process: GO:0006265 - DNA topological change [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA topoisomerase III
translation: MTTVILAEKPSQARSYVQAFQKSTKKQGYYTVSDPVLPDNTLVTYGLGHLVELATPDKYDQKYQQWALSNLPIFPDKYKFEVSASKKAQFKVVKDLLTKADTIIVATDSGREGSNIAWSIMNQAHIDVKSKTIKRLWLNSLEKDAIITGFKNLGDWHKDYLAYKEAQTRQISDWLIGMNGSPLYTLLLRQKGVRGVYSIGRVQTPTLYMVYRRDQAIKNFKPEPYFELNAEILANQQKFVAKLDPYQRFKDETGIMTFMQAKHVQKGSQGGLIKDVQKQAKKRASPQLFSLSSLQSAMNKRYHASASQTLAAIQSLYEAKLLSYPRTDCAYITDEEFEYLVANLTKYLGLVSKPVALTNTTPNKRYVDGKKVEEHYAIIMTKVVPTKEKLASLPKLQQQVYDLVLRTTLAMFADPYEYEETTIITQVGDANFKATGKVPTKQGWQALFDDHKVDQQEAATLPIVHQGDQVQANLQTPQKETTPPVPFTEGTLITAMKTAGKTLDDEEAQAILKDVQGIGTSATRANVLEVLKKRGYLVTEKNKLHVSEVGITLCKAVELEPLLTSPEMTAKWEQALQQISTEERTPDNFLSQIKNFVAKLIADVPTQLTGNAAIKQQINHQQQAQKSDEVFLETPQATVLNKQKFYIVKPKQGEDFTLPKKWSSKTLGKTAIKALVTKGETSKLKGFKSKKGKSFGAKLKLDGHKLSFDFD
SIO_010081: AYR53_RS13090
subclass of: SO_0000673
so part of: AYR53_RS13090
location: 15667..17802
location: region:15667-17802:1
so has part: feature:15667-17802:1:exon

WP_068281343.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15667-17802:1:exon

AYR53_RS13095
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13095
old locus tag: AYR53_13090
so part of: sequence
location: 17924..18139
location: region:17924-18139:1
so has part: feature:17924-18139:1:exon
subclass of: SO_0000010

42983189
type: Gene
SIO_000068: ncbigene

position:17924:1
position: 17924
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18139:1
position: 18139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17924-18139:1:exon

AYR53_RS13095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13095
old locus tag: AYR53_13090
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015474742.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDNKLAVIGSELPVLQAKGTYKYLKEITGNGAYYQVAWQKLADGYIALYGTTPIQINVAPILNDIFENEEG
SIO_010081: AYR53_RS13095
subclass of: SO_0000673
so part of: AYR53_RS13095
location: 17924..18139
location: region:17924-18139:1
so has part: feature:17924-18139:1:exon

WP_008855344.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17924-18139:1:exon

AYR53_RS13100
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13100
old locus tag: AYR53_13095
so part of: sequence
location: 18143..19267
location: region:18143-19267:1
so has part: feature:18143-19267:1:exon
subclass of: SO_0000010

42983190
type: Gene
SIO_000068: ncbigene

position:18143:1
position: 18143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19267:1
position: 19267
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18143-19267:1:exon

AYR53_RS13100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13100
old locus tag: AYR53_13095
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002346505.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPSKADVKAWKAQLVAQAEQQILKLTDSDRFKQYLNTLAKFHHYSARNIDLIYAQNPQATQVAGFKQWQTAFNRTVKRGAKAIRIAAPIIKKLTPAEKKRLDTTDERAIVGYRYLPVFDVSQTSGEPVLSAKDFVKENLADHQNVTSLYNAFKDYLNQQTDLKVSEVPLASLNGAKGYFQPSTNEIVIGGDEPDNALKLKTLYHEYAHSQLHGLKSAFKDRPRAYQETQAEAVAYVAMQNIGVDTSNYSLGYVATWAKDKAVIHSALSEIQQVSNKVIELSDGLTKQLGLQEAQKEPEHNLKKLSAHDLNKSYQGLQQQVQQATNPQQKSELKNKLNDVHQKISKRTQKQLQAFAEQNPEIKQPESELDQSLKR
SIO_010081: AYR53_RS13100
subclass of: SO_0000673
so part of: AYR53_RS13100
location: 18143..19267
location: region:18143-19267:1
so has part: feature:18143-19267:1:exon

WP_068281342.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18143-19267:1:exon

AYR53_RS13105
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13105
old locus tag: AYR53_13100
so part of: sequence
location: 19556..20926
location: region:19556-20926:1
so has part: feature:19556-20926:1:exon
subclass of: SO_0000010

42983191
type: Gene
SIO_000068: ncbigene

position:19556:1
position: 19556
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20926:1
position: 20926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19556-20926:1:exon

AYR53_RS13105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13105
old locus tag: AYR53_13100
inference: COORDINATES: protein motif:HMM:NF024935.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transposase
translation: MNSFYQKSSLLTTLHAYFFDLKAAGLSKPMGLNYFWLCLALLVIGDRHSIRHLFEQFLGRVTKHSLNTFYRALAVIGDHLPQLEVRNLTYLLTLIPTTCQDLPLLLVLDDTVQPKFGHKFTGVKYLFDHAAHTGKRLVNAHDFVTLGLMIPTQRDQDDQPVYTFLPLATHLYQAEQATKYQQAAQMIKTTLKSIASDQQVFLLCDSWYPKAEINQLVMTQPNLAMIANVRKDTAMFGLPKRTGKRGRPRKYGDQIHLGNIALNLCSAGDQIGIVRCLTRLMPQPVYMIRVQRKTTCRLFMATSAPEELAAITTETLAVDPTQLTYRTPETSAPAPALRALAYYQKRWAIETYFYEMKTFWHFGDYAVRSVGKIEADHHLLNTAYTLMIVLPLTQPRLAFLATKSLRERKLWLSRQIQAALFLASLARQVQRRLKTTPAKVVIQWLASCWSGVSEKL
SIO_010081: AYR53_RS13105
subclass of: SO_0000673
so part of: AYR53_RS13105
location: 19556..20926
location: region:19556-20926:1
so has part: feature:19556-20926:1:exon

WP_068279923.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19556-20926:1:exon

AYR53_RS13600
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13600
so part of: sequence
location: complement(20910..20978)
location: region:20910-20978:-1
so has part: feature:20910-20978:-1:exon
subclass of: SO_0000010

42983277
type: Gene
SIO_000068: ncbigene

position:20910:-1
position: 20910
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20978:-1
position: 20978
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20910-20978:-1:exon

AYR53_RS13600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13600
inference: COORDINATES: protein motif:HMM:NF028245.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: putative holin-like toxin
translation: MLLFGTFLIALLSYIQHFTAFH
SIO_010081: AYR53_RS13600
subclass of: SO_0000673
so part of: AYR53_RS13600
location: complement(20910..20978)
location: region:20910-20978:-1
so has part: feature:20910-20978:-1:exon

WP_239691386.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20910-20978:-1:exon

AYR53_RS13110
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13110
old locus tag: AYR53_13105
so part of: sequence
location: complement(21192..22394)
location: region:21192-22394:-1
so has part: feature:21192-22394:-1:exon
subclass of: SO_0000010

42983192
type: Gene
SIO_000068: ncbigene

position:21192:-1
position: 21192
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22394:-1
position: 22394
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21192-22394:-1:exon

AYR53_RS13110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13110
old locus tag: AYR53_13105
EC number: 3.1.21.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003606688.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006304 - DNA modification [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: restriction endonuclease subunit S
translation: MKDKQAKYPQLRFKGFTDPWEKRKLSSISERVTRKNKNNESTLPLTISAQDGLVDQNDFFNKQVASRDVTGYFLVKNGEFAYNKSYSNGYPWGAIKRLDKYDMGVLSTLYIVFRPTKINSQFLVSYYDTTRWYREVSKNAAEGARNHGLLNIAPTDFFNTLLVVPKIVDEQQKIGSFFKQLDDIIALHQRKLDLLKEQKKGYLQKMFPKNGAKVPELRFAGFADAWEQRKLGDEVRIVMGQSPNSENYTDDPNDYILVQGNADMKNGRVLPRVWTTQVTKQAEKDDLILSVRAPVGDIGKTAYDVVIGRGVAAIKGNEFIFQNLGKMKSDGYWTRYSTGSTFESINSTDIKEAIISVPAIEEQDKIGSFFKLLDNTIALHQRKLEKLQELKKGYLQKMFC
SIO_010081: AYR53_RS13110
subclass of: SO_0000673
so part of: AYR53_RS13110
location: complement(21192..22394)
location: region:21192-22394:-1
so has part: feature:21192-22394:-1:exon

WP_068281341.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21192-22394:-1:exon

AYR53_RS13115
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13115
old locus tag: AYR53_13110
so part of: sequence
location: complement(22384..24006)
location: region:22384-24006:-1
so has part: feature:22384-24006:-1:exon
subclass of: SO_0000010

42983193
type: Gene
SIO_000068: ncbigene

position:22384:-1
position: 22384
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24006:-1
position: 24006
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22384-24006:-1:exon

AYR53_RS13115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13115
old locus tag: AYR53_13110
EC number: 2.1.1.72
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003553103.1
GO function: GO:0015666 - restriction endodeoxyribonuclease activity [Evidence IEA]; GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO process: GO:0006306 - DNA methylation [Evidence IEA]; GO:0009307 - DNA restriction-modification system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type I restriction-modification system subunit M
translation: MSEKTTQASQLESALWNAADVLRGKMDASEYKNYLLGLIFYRFLSEKTLTTFSEWAGETENVTQKYAQYMDPQFELEGVSVQPSLVEYLQNTLGYLIQPQALYTTLIGKIQAHTFALDDLSQALHDLEQSTQNLSSAQDFSGLFADVDLSSNKLGSSLQQRNQTISDTMLALNAIDLVHHQGDVLGDAYEYLIAQFASDSGKKAGEFYTPRQVSDIIAQIVTYQRNAGDKQVRTIYDPAVGSGSLLLNVGQHVQDPNLVGYHGQELNTTTYNLARMNLMLHGVSYDDMHLRNGDTLSKDWPVDEPYLFDAVVMNPPYSAHWDNSDKRLSDPRFRDYGVLPPKSKADFAFLLHGFYHLQEHGTMGIVLPHGVLFRGAKEGKIRQKLLLDNRIDAIIGLPANIFHSTGIPTLIMILKKHKTTDDVLFIDASREFEKDKNQNKLTAANIQKIVTTYQNRQDVDKYAHVASPAEIKENDYNLNIPRYVDTFEPEPDIDLNQVKADLKQLDEKISQNEQAFNELASQLVATHVNDQSKPEAHNEG
SIO_010081: AYR53_RS13115
subclass of: SO_0000673
so part of: AYR53_RS13115
location: complement(22384..24006)
location: region:22384-24006:-1
so has part: feature:22384-24006:-1:exon

WP_068281340.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22384-24006:-1:exon

AYR53_RS13120
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13120
old locus tag: AYR53_13115
so part of: sequence
location: complement(24020..27187)
location: region:24020-27187:-1
so has part: feature:24020-27187:-1:exon
subclass of: SO_0000010

42983194
type: Gene
SIO_000068: ncbigene

position:24020:-1
position: 24020
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27187:-1
position: 27187
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24020-27187:-1:exon

AYR53_RS13120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13120
old locus tag: AYR53_13115
EC number: 3.1.21.3
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015639662.1
GO component: GO:0019812 - type I site-specific deoxyribonuclease complex [Evidence IEA]
GO function: GO:0009035 - type I site-specific deoxyribonuclease activity [Evidence IEA]
GO process: GO:0009307 - DNA restriction-modification system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HsdR family type I site-specific deoxyribonuclease
translation: MLELSFEKEVVKTLTTGSNQWVERKDLYGATPDQLWANFRDKLNNNNYAKLQGYPLTDTEFNQVKRAIEVRTPYEAAKLLAAENGIGKVEVERDDAKLGTVTLELFWKADVAGGKSSYEVVRQAVRPRLAGTQDVDPDRRFDVTLLINGLPLIQLELKKATVELNQAFNQIEKYAQEGKYTGIYSLLQMFVIMTPDSTAYFANAEPDHFNKAFLFNWRTRDNHPVENGLAFTRQVLNIPMAHKMVSEYTVIDQERQSLILLRPYQIYAIEAVMHRIHDHQDGFVWHTTGSGKTLTSYKTAKLAAQDPGVDKVIFLVDRRDLDEQTTSNFSAYAANDDIAINEAQNTGDLMRKLQQNDGKVLVTSIQKLHRAVKKTQAQLATGKQSRFSKTLKQRVIFFVDEAHRSQFGKMQKEIRAAFVNSNWYGYTGTPIFNENKKQLKGDLAVTTEELFGKVCHVYNLRDALEDQAVLPFNVEHVTTIGKDTLITRALEKETQRVKTRRDKQGRLLSTADEAKIQAKIQAMSVKDLEETYLTPADFETDEHINQVVQYILQKGPRKTSLGHGNYNAILTTSSIEMAQRYYQAFKAAKRATHNQLDPDWPRIAITYSLSENEDQSAQKHDQMATILKDYNQQYHTNFDLTDLNLYNEDVAKRAARREAVFAHLQTDQEINLVIVVRRLLTGFDAPRLNTLFVDRTLAYQELIQAYSRTNRLQNRELKQEGQIVTFRVPAIMEANEREAYKLYSGEGSFNVIIRPTYQQAVLKFQKAVVDLKAIAPTPTAADDLKGTTAKVQFVKAFRQVNQQLNSLSMYNDFTWKNSEKAFGIAQPEVESYTGKYLRIKAAVTNQDPDIVPEELAALDFSLAVGSVVLVDYDYLTQLIQDWIDEQQQYTTPDQAQAHMTDYLQNSAKVQASLNKLAETQPQQAQLIREAMPYIEQQMQQSQQQSTPNQVPVALNARELVADYAQKQLVKKTTTFAHTWGLDQAALLRVAREHTVGTDEWHHEQELTQSANLAAALQAQTTTGPKIPAILPLYRIKSQNAWRQFIEHDLAIYLQK
SIO_010081: AYR53_RS13120
subclass of: SO_0000673
so part of: AYR53_RS13120
location: complement(24020..27187)
location: region:24020-27187:-1
so has part: feature:24020-27187:-1:exon

WP_068281339.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24020-27187:-1:exon

AYR53_RS13835
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13835
so part of: sequence
location: complement(28042..28224)
location: region:28042-28224:-1
so has part: feature:28042-28224:-1:exon
subclass of: SO_0000010

77610035
type: Gene
SIO_000068: ncbigene

position:28042:-1
position: 28042
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28224:-1
position: 28224
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28042-28224:-1:exon

AYR53_RS13835
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13835
inference: COORDINATES: protein motif:HMM:NF028245.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNRVEKLRRWLFSIGGGAYGVKPLKPINPNERSSLSVRCGRFTINAGFRYLYRGLNCINC
SIO_010081: AYR53_RS13835
subclass of: SO_0000673
so part of: AYR53_RS13835
location: complement(28042..28224)
location: region:28042-28224:-1
so has part: feature:28042-28224:-1:exon

WP_239693284.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28042-28224:-1:exon

AYR53_RS13130
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13130
old locus tag: AYR53_13125
so part of: sequence
location: complement(28410..29324)
location: region:28410-29324:-1
so has part: feature:28410-29324:-1:exon
subclass of: SO_0000010

42983196
type: Gene
SIO_000068: ncbigene

position:28410:-1
position: 28410
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29324:-1
position: 29324
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28410-29324:-1:exon

AYR53_RS13130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13130
old locus tag: AYR53_13125
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016526899.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HU-CCDC81 and SPOR domain-containing protein
translation: MKKVAKLIGLSIILLILISISTLIDQKQSSFAVVNKVLTLFIGAWFPKLFRYSVDLVDNDNWKASQRKLERAGILKKNTIIRISFAYLFRIKVDGKYFLVPNTRSHKYQPVGGAYKFCNEEAQYLSNSMSVENDDRVPVNKTTQNDYRLLVKNKHLRDFVKRFDITEHRENGSNLSREFEEEIFSTGILTKKSFGSNLSYRYCGRHMTDIQYGSIFKHFELLLADIFEVQLSEKQEELFRTLMEEKSDKYYFATSDEIKSFGVSTVTNKFTDNIATHTPKIITENTEKLGKREKSSPQIEVSLN
SIO_010081: AYR53_RS13130
subclass of: SO_0000673
so part of: AYR53_RS13130
location: complement(28410..29324)
location: region:28410-29324:-1
so has part: feature:28410-29324:-1:exon

WP_068281338.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28410-29324:-1:exon

AYR53_RS13135
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13135
old locus tag: AYR53_13130
so part of: sequence
location: complement(29345..30703)
location: region:29345-30703:-1
so has part: feature:29345-30703:-1:exon
subclass of: SO_0000010

42983197
type: Gene
SIO_000068: ncbigene

position:29345:-1
position: 29345
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:30703:-1
position: 30703
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29345-30703:-1:exon

AYR53_RS13135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13135
old locus tag: AYR53_13130
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016526900.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: nucleotidyltransferase
translation: MYDCSRNFNEFYHTKVILPEKSQNELRKKRKTNIKRLKSGLSEYNSENNTGFRISEERIQGSMAMHTVVQNDENDYDIDVGIVFESDNLDEIGPHAIKNILENALKRKMGQFAVEPLVKTSCVRMEYSNGYHVDFAIFKRSKIYLENEYTYEHAGAKWSTRHIKALEEWFNTETSKTNDNLRKIVRLSKMFCKSRKTWKNMPSGLIQTVLCDEAITNDYSRTDELFYYTMKKIVDRLNVNLEVNAPVDNERKLVIRDIDYTRVQNWKNRLENELTKLDVLFNPDCTFAEAVDAWGLFFNHSYWKELNMHETRKSLREDTQEVFNNTEEHIEDKYLVNEHYDVSINCKISGNGIRPMPIEKYLDSYFAKFIPHNFSVTCKIDHADCPPFDKVLWKVLNVGKESVKRNDIRGQILDRGEKITENTIFRGQHYIECYLIKNDICIAIGHVDIPIG
SIO_010081: AYR53_RS13135
subclass of: SO_0000673
so part of: AYR53_RS13135
location: complement(29345..30703)
location: region:29345-30703:-1
so has part: feature:29345-30703:-1:exon

WP_068281337.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29345-30703:-1:exon

AYR53_RS13140
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13140
old locus tag: AYR53_13135
so part of: sequence
location: complement(31024..31365)
location: region:31024-31365:-1
so has part: feature:31024-31365:-1:exon
subclass of: SO_0000010

42983198
type: Gene
SIO_000068: ncbigene

position:31024:-1
position: 31024
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31365:-1
position: 31365
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31024-31365:-1:exon

AYR53_RS13140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13140
old locus tag: AYR53_13135
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNQSTFQLLGNVASADFYLCEGSDITLISDNNAYNMKALAQEALKLRVPNSLTVIDLNNFYVGMIPIDHNQILTMIPHINTTIIPFNYQEITNFIGSRIFGVGKYFHSKSTRP
SIO_010081: AYR53_RS13140
subclass of: SO_0000673
so part of: AYR53_RS13140
location: complement(31024..31365)
location: region:31024-31365:-1
so has part: feature:31024-31365:-1:exon

WP_057784218.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31024-31365:-1:exon

AYR53_RS13145
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13145
old locus tag: AYR53_13140
so part of: sequence
location: 31502..31705
location: region:31502-31705:1
so has part: feature:31502-31705:1:exon
subclass of: SO_0000010

42983199
type: Gene
SIO_000068: ncbigene

position:31502:1
position: 31502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31705:1
position: 31705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31502-31705:1:exon

AYR53_RS13145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13145
old locus tag: AYR53_13140
inference: COORDINATES: protein motif:HMM:TIGR03715.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: KxYKxGKxW signal peptide domain-containing protein
translation: MGEKKLHYKMYKDGKKFVFAAIATLSFFVFGGVSTVAVHADTTSGNSTAATVNTSEQAHQHYCSSMQ
SIO_010081: AYR53_RS13145
subclass of: SO_0000673
so part of: AYR53_RS13145
location: 31502..31705
location: region:31502-31705:1
so has part: feature:31502-31705:1:exon

WP_068477294.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31502-31705:1:exon