Loigolactobacillus backii strain TMW 1.1989 plasmid pL11989-2, complete sequence.
type: Entry
definition: Loigolactobacillus backii strain TMW 1.1989 plasmid pL11989-2, complete sequence.
sequence version: NZ_CP014875.1
sequence date: 2023-02-06
sequence: sequence
division: CON
label: NZ_CP014875.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN04505727
keyword: RefSeq
source: Loigolactobacillus backii
organism: Loigolactobacillus backii
taxonomy: Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Loigolactobacillus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP014875.1.\nSource DNA or bacteria available from the culture collection of the\nTechnische Mikrobiologie Weihenstephan upon request and only if\npermitted by a potential cooperation partner. Individual decisions.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Celera Assembler v. 1\nAssembly Name :: Lbackii11989-1\nLong Assembly Name :: Lactobacillus backii TMW 1.1989 1\nGenome Coverage :: 89\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/05/2023 23:00:11\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,668\nCDSs (total) :: 2,582\nGenes (coding) :: 2,526\nCDSs (with protein) :: 2,526\nGenes (RNA) :: 86\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 67\nncRNAs :: 4\nPseudo Genes (total) :: 56\nCDSs (without protein) :: 56\nPseudo Genes (ambiguous residues) :: 0 of 56\nPseudo Genes (frameshifted) :: 13 of 56\nPseudo Genes (incomplete) :: 36 of 56\nPseudo Genes (internal stop) :: 16 of 56\nPseudo Genes (multiple problems) :: 9 of 56\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 22581
topology: circular
so has quality: SO_0000988
location: 1..22581
location: region:1-22581:1
RO_0002162: 375175

NZ_CP014875
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN04505727
type: BioSample
SIO_000068: biosample

1
title: Pediococcus and Lactobacillus from brewery environment - whole genome sequencing and assembly
author: Behr, J.
author: Geissler, A.J.
author: Vogel, R.F.
journal: Unpublished

2
title: Direct Submission
author: Behr, J.
author: Geissler, A.J.
author: Vogel, R.F.
journal: Submitted (18-MAR-2016) Technische Mikrobiologie, Technische Universitaet Muenchen, Gregor-Mendel-Strasse 4, Freising, Bavaria 85354, Germany

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22581:1
position: 22581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-22581:1:source
so part of: sequence
organism: Loigolactobacillus backii
mol type: genomic DNA
strain: TMW 1.1989
isolation source: beer
plasmid: pL11989-2
country: Germany

375175
type: Taxonomy
SIO_000068: taxonomy

AYR53_RS12480
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12480
old locus tag: AYR53_12475
so part of: sequence
location: complement(323..571)
location: region:323-571:-1
so has part: feature:323-571:-1:exon
subclass of: SO_0000010

42983075
type: Gene
SIO_000068: ncbigene

position:323:-1
position: 323
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:571:-1
position: 571
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:323-571:-1:exon

AYR53_RS12480
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12480
old locus tag: AYR53_12475
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003712273.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribbon-helix-helix domain-containing protein
translation: MSLDSFNHKKDEEMRESYETTLKDNKKDAVAFLKNISRKEVERKRSVTFSITESQLKKMDTAARKNGFKNRSEFLASIIDAI
SIO_010081: AYR53_RS12480
subclass of: SO_0000673
so part of: AYR53_RS12480
location: complement(323..571)
location: region:323-571:-1
so has part: feature:323-571:-1:exon

WP_002825834.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:323-571:-1:exon

AYR53_RS12485
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12485
old locus tag: AYR53_12480
so part of: sequence
location: complement(585..1391)
location: region:585-1391:-1
so has part: feature:585-1391:-1:exon
subclass of: SO_0000010

42983076
type: Gene
SIO_000068: ncbigene

position:585:-1
position: 585
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1391:-1
position: 1391
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:585-1391:-1:exon

AYR53_RS12485
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12485
old locus tag: AYR53_12480
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002825830.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MKIITFTAIKGGVGKTTLTLNYGDWLAKHGKKVLLIDLDHQCNLTTVFEKTRRNNTIAEAFKENDNAQKVKIDSVGPNLDLIAGFIDLDVLGSYLENNSNKEMMLFMWFKNNFDSLSLTDYDYILIDTHPDFSTITKNAIAISNYLLSPITPSEHGYNAKFDLETRLEKFRKSLFDYRTGETYVDAKLFFIGNMIRHNTSMSRDLLKHIEGDETVATIIPERELFNKATARHASIFELANRDESILKQNQKFIKHADHLFQELANETK
SIO_010081: AYR53_RS12485
subclass of: SO_0000673
so part of: AYR53_RS12485
location: complement(585..1391)
location: region:585-1391:-1
so has part: feature:585-1391:-1:exon

WP_068281302.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:585-1391:-1:exon

AYR53_RS13895
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13895
so part of: sequence
location: 1744..1875
location: region:1744-1875:1
so has part: feature:1744-1875:1:exon
subclass of: SO_0000010

78079396
type: Gene
SIO_000068: ncbigene

position:1744:1
position: 1744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1875:1
position: 1875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1744-1875:1:exon

AYR53_RS13895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13895
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKNRKLGLVLLASAILTATYIPTSRASADTTQLKQTNVIKDAG
SIO_010081: AYR53_RS13895
subclass of: SO_0000673
so part of: AYR53_RS13895
location: 1744..1875
location: region:1744-1875:1
so has part: feature:1744-1875:1:exon

WP_257749690.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1744-1875:1:exon

AYR53_RS12490
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12490
old locus tag: AYR53_12485
so part of: sequence
location: 1918..2325
location: region:1918-2325:1
so has part: feature:1918-2325:1:exon
subclass of: SO_0000010

42983077
type: Gene
SIO_000068: ncbigene

position:1918:1
position: 1918
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2325:1
position: 2325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1918-2325:1:exon

AYR53_RS12490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12490
old locus tag: AYR53_12485
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTENQINQLDPYVKVVNNQYVLQLPENNNVSQSMVTEIEDELSQVNADIKSNGYTIKTNDKTYGASTSAAFGVVLAKSSSNPTIKRFWWGIRVYMRNKTAVNKEIAEFKNGQAIAEFGSLVSPPVGVTLLSILAI
SIO_010081: AYR53_RS12490
subclass of: SO_0000673
so part of: AYR53_RS12490
location: 1918..2325
location: region:1918-2325:1
so has part: feature:1918-2325:1:exon

WP_068226390.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1918-2325:1:exon

AYR53_RS12495
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12495
old locus tag: AYR53_12490
so part of: sequence
location: 2597..3499
location: region:2597-3499:1
so has part: feature:2597-3499:1:exon
subclass of: SO_0000010

42983078
type: Gene
SIO_000068: ncbigene

position:2597:1
position: 2597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3499:1
position: 3499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2597-3499:1:exon

AYR53_RS12495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12495
old locus tag: AYR53_12490
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014939245.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: metal ABC transporter solute-binding protein
translation: MLHKFSGFKAVLLVIAAVALGIGLTGCASNSASNGKIKITATTDFYGEVAKAVVGSKGDVTSIITNPNVDPHDYQASTKVAKETVGSKIVIANGIGYDGWMNNLVKDSSKVDYIKVGEDLMGKQNGDNPHLWYNPATMPKLANTIATKLGKLQPKNKAYFKKNAKKYIASLKPVNDKIAQLKQLAATKKNKEVYVSEPVFDYALEATGFKVGDPQFENDTEKGVDPSPQTIRTMQNGIKNHKIAFFVFNKQVDSKTVNNLVALAKQNKVPVLPVTETLPANKTYVSWMDAQYTQLMNILK
SIO_010081: AYR53_RS12495
subclass of: SO_0000673
so part of: AYR53_RS12495
location: 2597..3499
location: region:2597-3499:1
so has part: feature:2597-3499:1:exon

WP_068226392.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2597-3499:1:exon

AYR53_RS12500
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12500
old locus tag: AYR53_12495
so part of: sequence
location: 3684..4709
location: region:3684-4709:1
so has part: feature:3684-4709:1:exon
subclass of: SO_0000010

42983079
type: Gene
SIO_000068: ncbigene

position:3684:1
position: 3684
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4709:1
position: 4709
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3684-4709:1:exon

AYR53_RS12500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12500
old locus tag: AYR53_12495
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012695418.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS30 family transposase
translation: MTRIKNIISNQYHQLNLAERGRIESLRDLDWSIRRIAQALHRNPSTISRELKRGTTTQINASTHIFEQSYLAETGEAIYRKHRLNSCYRGLFDHCQTFCNALVTALKARPRMHSVDTFVHQFKTDHPRLVCPSTPTVYRYIDDQRLAIRNSDLPAKLRRRIKCPGAKHHRINKKNLGHSIEERPAMVQARQELGHWEGDLVKGKRVESEPALMTLTERVSRLEIIVKLPNYHADTCLKALQNTLYDYGTEHFKTITFDNGAEFSSLSQVKGTDIYFAHPYSPWELGTNENTNGLLREFFPKGRSLASASLIDIQLAQDTLNNRLRRSLNYRCPADLMPELA
SIO_010081: AYR53_RS12500
subclass of: SO_0000673
so part of: AYR53_RS12500
location: 3684..4709
location: region:3684-4709:1
so has part: feature:3684-4709:1:exon

WP_068281301.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3684-4709:1:exon

AYR53_RS12505
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12505
old locus tag: AYR53_12500
so part of: sequence
location: complement(4834..5415)
location: region:4834-5415:-1
so has part: feature:4834-5415:-1:exon
subclass of: SO_0000010

42983080
type: Gene
SIO_000068: ncbigene

position:4834:-1
position: 4834
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5415:-1
position: 5415
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4834-5415:-1:exon

AYR53_RS12505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12505
old locus tag: AYR53_12500
function: Site-specific recombinases, DNA invertase Pin homologs
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015474630.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MKYGYARVSTTDQKLANQIELLKLAGAEKIFQEKFTGTTTERPEFQKLLRALKTGDTLIVTKLDRFARNTREALAIIQELFKENVKVNILNMGLIDNTPTGQLVFTIFSAFAQFERDMIVTRTQEGKLYAKQHDPLFREGRPKTYSDEQIRFAYELRKQGMTYKMIERKTGISKRTQQRRFKLIEKPSDTSKI
SIO_010081: AYR53_RS12505
subclass of: SO_0000673
so part of: AYR53_RS12505
location: complement(4834..5415)
location: region:4834-5415:-1
so has part: feature:4834-5415:-1:exon

WP_014940888.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4834-5415:-1:exon

AYR53_RS12510
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12510
old locus tag: AYR53_12505
so part of: sequence
location: 5609..5854
location: region:5609-5854:1
so has part: feature:5609-5854:1:exon
subclass of: SO_0000010

42983081
type: Gene
SIO_000068: ncbigene

position:5609:1
position: 5609
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5854:1
position: 5854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5609-5854:1:exon

AYR53_RS12510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12510
old locus tag: AYR53_12505
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLKIKAFLLGIAVLLGCASSVTVIQAAGLGGPNVGNYIYEDQEVVTNQQYEKLGDINGQIDTGPNPQRLYILVLSLKLESQ
SIO_010081: AYR53_RS12510
subclass of: SO_0000673
so part of: AYR53_RS12510
location: 5609..5854
location: region:5609-5854:1
so has part: feature:5609-5854:1:exon

WP_068281300.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5609-5854:1:exon

AYR53_RS12515
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12515
old locus tag: AYR53_12510
so part of: sequence
location: 5897..6490
location: region:5897-6490:1
so has part: feature:5897-6490:1:exon
subclass of: SO_0000010

42983082
type: Gene
SIO_000068: ncbigene

position:5897:1
position: 5897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6490:1
position: 6490
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5897-6490:1:exon

AYR53_RS12515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12515
old locus tag: AYR53_12510
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSDNDSIRRFNYLTDNDPKTKGIPEDIVNKTGEVLYGHNHYYDIDSDENGIPDWKNNYLICDLKNNRVYFDPSDQADSYITDLMFWKLKFGLADLTSGNTYQRMEALFELAERLEPKLQKVADNKEFIYSKSYYDIKNIVNWVLLVLGIIVGLVIWFIIHRQNKNHPHNSGGSELGNSDYDAGFDEGYYMGSQDPFM
SIO_010081: AYR53_RS12515
subclass of: SO_0000673
so part of: AYR53_RS12515
location: 5897..6490
location: region:5897-6490:1
so has part: feature:5897-6490:1:exon

WP_156520065.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5897-6490:1:exon

AYR53_RS12520
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12520
old locus tag: AYR53_12515
pseudo: true
so part of: sequence
location: <6702..6899
location: region:6702-6899:1
so has part: feature:6702-6899:1:exon
subclass of: SO_0000010

42983083
type: Gene
SIO_000068: ncbigene

position:6702:1
position: 6702
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:6899:1
position: 6899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6702-6899:1:exon

AYR53_RS12520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12520
old locus tag: AYR53_12515
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005917937.1
note: internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: site-specific integrase
SIO_010081: AYR53_RS12520
subclass of: SO_0000673
so part of: AYR53_RS12520
location: <6702..6899
location: region:6702-6899:1
so has part: feature:6702-6899:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6702-6899:1:exon

AYR53_RS12525
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12525
old locus tag: AYR53_12520
so part of: sequence
location: 7779..8984
location: region:7779-8984:1
so has part: feature:7779-8984:1:exon
subclass of: SO_0000010

42983084
type: Gene
SIO_000068: ncbigene

position:7779:1
position: 7779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8984:1
position: 8984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7779-8984:1:exon

AYR53_RS12525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12525
old locus tag: AYR53_12520
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016628116.1
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RepB family plasmid replication initiator protein
translation: MPIIPKNNEEKNKKVVCTLNDLEKRKVVEHNALIQSVAKMQKTALKMFELAVSCIDTENLPENNTVYLSKKELFSFFEVSSSSKHSQFKEAIEFMQKQAYFKIRSNKALGIEYESIVPIPYVKWNDYNDEVTIQFSEHIMPYLINLKAEFTQYKISELQKLNSKYSLILYRWLSMQYNQYEHYSVKGGRRAEQVEAYRNPSIPVKELRVITDTVNDYVRFQSLETWVLKKPLEEINAHTSFNVTYDKIKKGRSIDSIVFHIEKKRMADDNSYKLDNRAYQEDKKQKETDNRLLAGEALENKYTKLLIEHFLLSPYDMTDTATMAGLQKNVYPLYDELKDLRGLNGVKDHLSYVASKKEAYSKRNVAKYLKKAIEQYLPTVKLQDLEQPERAKVRGKGASHE
SIO_010081: AYR53_RS12525
subclass of: SO_0000673
so part of: AYR53_RS12525
location: 7779..8984
location: region:7779-8984:1
so has part: feature:7779-8984:1:exon

WP_010891346.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7779-8984:1:exon

AYR53_RS12530
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12530
old locus tag: AYR53_12525
so part of: sequence
location: 8977..9564
location: region:8977-9564:1
so has part: feature:8977-9564:1:exon
subclass of: SO_0000010

42983085
type: Gene
SIO_000068: ncbigene

position:8977:1
position: 8977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9564:1
position: 9564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8977-9564:1:exon

AYR53_RS12530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12530
old locus tag: AYR53_12525
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015081747.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSENLKTIKELADELGVSKSYIDKIIRILELHTKLDKVGNKYVISKKQEKSIKDRLRSSESTTKSHTKSTTKTHTEVDFEVDFLKEEILYLRKSHDKQLTNKDKQIETLSNLLDQQQRLALQDKKLLEEYKAENDRLKVLKMPSQETEFKHLDNQYKDEVNALKEKLENLQEQIKDQKRIEEQEKPRKWWGLWRK
SIO_010081: AYR53_RS12530
subclass of: SO_0000673
so part of: AYR53_RS12530
location: 8977..9564
location: region:8977-9564:1
so has part: feature:8977-9564:1:exon

WP_068281298.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8977-9564:1:exon

AYR53_RS12535
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12535
old locus tag: AYR53_12530
so part of: sequence
location: 9552..10754
location: region:9552-10754:1
so has part: feature:9552-10754:1:exon
subclass of: SO_0000010

42983086
type: Gene
SIO_000068: ncbigene

position:9552:1
position: 9552
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10754:1
position: 10754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9552-10754:1:exon

AYR53_RS12535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12535
old locus tag: AYR53_12530
EC number: 3.1.21.-
inference: COORDINATES: protein motif:HMM:NF013579.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006304 - DNA modification [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: restriction endonuclease subunit S
translation: MAKIDDSVKKKFPELRFPGFTDDWELRKLGEVYNFQYGQFNNNPDNGGQYPIYGANGIIGGYDEHNSENAIVIGHMGAYAGHVLWAEGKHFVTYNGTMGIADKSILNSNFGYYLVVSVNVPKLTAGSGQPFVSYSDLNGIKILIPTIEEQQKIGSFFKQLDNTIALHQRKLDLLKEQKKGYLQKMFPKNGAKVPELRFAGFADDWEERKLGDTETHFTDGNYGESYPSAKDMSDKANGIPFLRGSDFSNGYLDSSNANYIKPEKHTELTSGHIKQDDIVLAVRGSLGTLGYATKENEGWNINSQLAILRTNKSEISGMFLIQYLLGSKGQKEIFSRNTGTALKQLPIKQLKDIPVPVPTLLEQQKIGNFFKELDSTIALHQRKLDLLKEQKKGFLQKMFV
SIO_010081: AYR53_RS12535
subclass of: SO_0000673
so part of: AYR53_RS12535
location: 9552..10754
location: region:9552-10754:1
so has part: feature:9552-10754:1:exon

WP_167574667.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9552-10754:1:exon

AYR53_RS12540
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12540
old locus tag: AYR53_12535
so part of: sequence
location: complement(10872..11174)
location: region:10872-11174:-1
so has part: feature:10872-11174:-1:exon
subclass of: SO_0000010

42983087
type: Gene
SIO_000068: ncbigene

position:10872:-1
position: 10872
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11174:-1
position: 11174
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10872-11174:-1:exon

AYR53_RS12540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12540
old locus tag: AYR53_12535
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010625626.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system YafQ family toxin
translation: MQIKQTKSFERELKKLVKKHFPITVLKPCLEAIVEQDVLVLKQIKDHALKGNWRGYREFHPARYGNYGKNYDNWIVIYQLDHDELILLLVATGSHEILNQ
SIO_010081: AYR53_RS12540
subclass of: SO_0000673
so part of: AYR53_RS12540
location: complement(10872..11174)
location: region:10872-11174:-1
so has part: feature:10872-11174:-1:exon

WP_005917927.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10872-11174:-1:exon

AYR53_RS12545
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12545
old locus tag: AYR53_12540
so part of: sequence
location: complement(11164..11442)
location: region:11164-11442:-1
so has part: feature:11164-11442:-1:exon
subclass of: SO_0000010

42983088
type: Gene
SIO_000068: ncbigene

position:11164:-1
position: 11164
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11442:-1
position: 11442
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11164-11442:-1:exon

AYR53_RS12545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12545
old locus tag: AYR53_12540
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003625288.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelB/DinJ family antitoxin
translation: MSNTIIKNKTISTRVTPDISERAKANLAKQGLTVSEYIRLSLVKAANNEVRLVSFLDSPEALAAKKEAETGQVKNMGSLTDFEDWIDKLDAN
SIO_010081: AYR53_RS12545
subclass of: SO_0000673
so part of: AYR53_RS12545
location: complement(11164..11442)
location: region:11164-11442:-1
so has part: feature:11164-11442:-1:exon

WP_057775598.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11164-11442:-1:exon

AYR53_RS12550
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12550
old locus tag: AYR53_12545
so part of: sequence
location: 11546..12133
location: region:11546-12133:1
so has part: feature:11546-12133:1:exon
subclass of: SO_0000010

42983089
type: Gene
SIO_000068: ncbigene

position:11546:1
position: 11546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12133:1
position: 12133
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11546-12133:1:exon

AYR53_RS12550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12550
old locus tag: AYR53_12545
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005917937.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MQQVVLPIKDSNVLKEVQDTLLNNFKAGRRNYTIFQVGKATLLRVSDVMGLKQADIFNPDGSIKQNAFIHDRKTGKPNTLYLKPVQTELLLYRQWLLDHKLESEWLFPSIQHPERHITEKQFYKIMSKVGDLLGINYLGTHTMRKTGAYRVYTQSNYNIGLVMHLLNHSSEAMTLAYLGLDQASTETMLDQIDFG
SIO_010081: AYR53_RS12550
subclass of: SO_0000673
so part of: AYR53_RS12550
location: 11546..12133
location: region:11546-12133:1
so has part: feature:11546-12133:1:exon

WP_068281311.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11546-12133:1:exon

AYR53_RS12555
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12555
old locus tag: AYR53_12550
so part of: sequence
location: 12487..12699
location: region:12487-12699:1
so has part: feature:12487-12699:1:exon
subclass of: SO_0000010

42983090
type: Gene
SIO_000068: ncbigene

position:12487:1
position: 12487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12699:1
position: 12699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12487-12699:1:exon

AYR53_RS12555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12555
old locus tag: AYR53_12550
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010620841.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLGVIKIDEKKVLKPIDEMLADPWQVDIQELFEAFVNEPGEIKRNLYDSLYTYILQKRQENIINRPSFVI
SIO_010081: AYR53_RS12555
subclass of: SO_0000673
so part of: AYR53_RS12555
location: 12487..12699
location: region:12487-12699:1
so has part: feature:12487-12699:1:exon

WP_068281310.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12487-12699:1:exon

AYR53_RS13385
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13385
pseudo: true
so part of: sequence
location: complement(<12835..13047)
location: region:12835-13047:-1
so has part: feature:12835-13047:-1:exon
subclass of: SO_0000010

42983240
type: Gene
SIO_000068: ncbigene

position:12835:-1
position: 12835
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:13047:-1
position: 13047
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12835-13047:-1:exon

AYR53_RS13385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13385
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003596745.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS5 family transposase
SIO_010081: AYR53_RS13385
subclass of: SO_0000673
so part of: AYR53_RS13385
location: complement(<12835..13047)
location: region:12835-13047:-1
so has part: feature:12835-13047:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12835-13047:-1:exon

AYR53_RS12560
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12560
old locus tag: AYR53_12555
so part of: sequence
location: 13328..13759
location: region:13328-13759:1
so has part: feature:13328-13759:1:exon
subclass of: SO_0000010

42983091
type: Gene
SIO_000068: ncbigene

position:13328:1
position: 13328
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13759:1
position: 13759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13328-13759:1:exon

AYR53_RS12560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12560
old locus tag: AYR53_12555
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016497299.1
GO process: GO:0006825 - copper ion transport [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CopY/TcrY family copper transport repressor
translation: MKDAKNVTITDSEWMVMRAIWTMGHATSRELIDAMNELEGWSASTTKTLLHRLIQKQAVAQHGGSRPFTYKPVVGEKESMAAAADDLFDHMCAMRAGSTIAGVIQSRELSRADIANLQAILAEKAKTAPEEVQCNCLPGDQTC
SIO_010081: AYR53_RS12560
subclass of: SO_0000673
so part of: AYR53_RS12560
location: 13328..13759
location: region:13328-13759:1
so has part: feature:13328-13759:1:exon

WP_002816262.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13328-13759:1:exon

AYR53_RS12565
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12565
old locus tag: AYR53_12560
so part of: sequence
location: 14010..16055
location: region:14010-16055:1
so has part: feature:14010-16055:1:exon
subclass of: SO_0000010

42983092
type: Gene
SIO_000068: ncbigene

position:14010:1
position: 14010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16055:1
position: 16055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14010-16055:1:exon

AYR53_RS12565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12565
old locus tag: AYR53_12560
EC number: 7.2.2.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006352438.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: heavy metal translocating P-type ATPase
translation: MANKEDHMNMKNMSAKNMENNESNMSHMGNLKVKFWVSVVLAIPVLLLAPIMGLSVSIISFSSPLIVGIIIVLFDTALYFYGGMPFLKGAKAEIQDKSPEMMTLVTLGISVSYFYSLYAFIANNFLNPANHVMDFSFELATLILIMLLGHWIEMNALMGAGAALQKMAALLPKTAHLVTDNGETKEVPVSDLKVGQAFQVRSGESIPADGVITAGESTVNEALVTGESAAVTKNVGDKVIGGATNNNGTLTVKISGTGDSGYLSQVMKMVQNAQQAKSKAEDKADLVAKYLFYAAFGVGIIAFFAWLPQGLATAMTIMVTVFVIACPHALGLAIPLVVSRSTTIGAQNGLLVRNRQAIEASQHVSHVLLDKTGTLTEGKFTVNALIPNDGIDETTLLSRLAALENNSTHPLAQAIITEAQAKDIEVVAAEKSQNIPGVGISGNVDGTDYTIVNGNYLTKQGIRFDEAAADKWAAKGNSVSFLLQGTQVQGMVAEGDTIKAGAKELISGLQRREITPVMLTGDNPKAAEHVANLLGLTEFHAGLLPDDKQKIIADYQAKGNHVIMVGDGVNDAPSLAAADIGIAIGAGTDVAIDSADVVLVKSEPSDILHFLDLAKITNRKMVQNLWWGAGYNIVAIPLAAGVLSFIGIILDPAVGAAVMAMSTIIVAINAMGLTGEKIKNV
SIO_010081: AYR53_RS12565
subclass of: SO_0000673
so part of: AYR53_RS12565
location: 14010..16055
location: region:14010-16055:1
so has part: feature:14010-16055:1:exon

WP_068281309.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14010-16055:1:exon

AYR53_RS12570
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12570
old locus tag: AYR53_12565
so part of: sequence
location: complement(16130..17380)
location: region:16130-17380:-1
so has part: feature:16130-17380:-1:exon
subclass of: SO_0000010

42983093
type: Gene
SIO_000068: ncbigene

position:16130:-1
position: 16130
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17380:-1
position: 17380
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16130-17380:-1:exon

AYR53_RS12570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12570
old locus tag: AYR53_12565
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014333962.1
GO function: GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO process: GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MFS transporter
translation: MLVKDTVPLPTPLIEVVKNYLIIKKAATIWYLTKKTGLATVLSIATILGMLPMVILSPFVGPMVDRWNKKGLLIFPDVFAACFAIILSVSGTVFHVFPLWLIFISLLMRSCAQTFQMPTIQSVMPTMVPDKEITRMNGQLGMVQSANMIIAPALGAFLFAFIPIEYLILLDVLGAIIGICILTWVQIPNNEKIDQPMHVLHNTRLGIKQLTNNKGLWYITLIGAVFTLTYMPAASMYPLMTMKYFQGTVSQAGLIEAIYSTSMLIGGTIIGLFGKWQDRMTPVIIAFFLVGIPTGISGILPGNQTGFLWFAALNIIEGIATPFFTTLLMAMIQQSYPAEELGQILGVLNSLLNLAGPIGLIFAGPLADVIGIERLFVIAGIGAAICGLVAVLMPITRQYDIRLHQKLAKLTEQPDK
SIO_010081: AYR53_RS12570
subclass of: SO_0000673
so part of: AYR53_RS12570
location: complement(16130..17380)
location: region:16130-17380:-1
so has part: feature:16130-17380:-1:exon

WP_068281308.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16130-17380:-1:exon

AYR53_RS12575
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12575
old locus tag: AYR53_12570
so part of: sequence
location: complement(17484..17840)
location: region:17484-17840:-1
so has part: feature:17484-17840:-1:exon
subclass of: SO_0000010

42983094
type: Gene
SIO_000068: ncbigene

position:17484:-1
position: 17484
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17840:-1
position: 17840
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17484-17840:-1:exon

AYR53_RS12575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12575
old locus tag: AYR53_12570
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002834562.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system YafQ family toxin
translation: MKKLRFKPRATFNADLKRLASLDQSIIDEVRAAIDLLLEQQQLPSEFEDHELNRRMSGYNEFHLRDTPKNKTPSETNDVLVVYTIDKDELVLIGIRVGSHDRLFPGQNRSKRYRKNDE
SIO_010081: AYR53_RS12575
subclass of: SO_0000673
so part of: AYR53_RS12575
location: complement(17484..17840)
location: region:17484-17840:-1
so has part: feature:17484-17840:-1:exon

WP_056986335.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17484-17840:-1:exon

AYR53_RS12580
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12580
old locus tag: AYR53_12575
so part of: sequence
location: complement(17840..18118)
location: region:17840-18118:-1
so has part: feature:17840-18118:-1:exon
subclass of: SO_0000010

42983095
type: Gene
SIO_000068: ncbigene

position:18118:-1
position: 18118
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17840-18118:-1:exon

AYR53_RS12580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12580
old locus tag: AYR53_12575
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003586674.1
GO process: GO:0008219 - cell death [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system prevent-host-death family antitoxin
translation: MTLALTQSDFRANLKKYLDQVNDEDETVYIARSHSRAVAIVSQEKMDWLERALKAKEGSLEYAIARDQLIKRHVLPDDEIVESNDDYWGQFK
SIO_010081: AYR53_RS12580
subclass of: SO_0000673
so part of: AYR53_RS12580
location: complement(17840..18118)
location: region:17840-18118:-1
so has part: feature:17840-18118:-1:exon

WP_068281307.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17840-18118:-1:exon

AYR53_RS12585
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12585
old locus tag: AYR53_12580
so part of: sequence
location: 18195..18782
location: region:18195-18782:1
so has part: feature:18195-18782:1:exon
subclass of: SO_0000010

42983096
type: Gene
SIO_000068: ncbigene

position:18195:1
position: 18195
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18782:1
position: 18782
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18195-18782:1:exon

AYR53_RS12585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12585
old locus tag: AYR53_12580
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005917937.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MQQVVLPIKDSNVLKEVQDTLLNNFKAGRRNYTVFQVGKATLLRVSDVMRLKQTDIFNPDGSIKQNAFIHDRKTGKPNTLYLKPVQTELLLYRQWLLDHRPASEWLFPSIQHPERHITEKQFYKIMSKVGDLLGINYLGTHTMRKTGAYRVYTQSNYNIGLVMNLLNHSSEAMTLAYLGLDQASTETMLDQIDFG
SIO_010081: AYR53_RS12585
subclass of: SO_0000673
so part of: AYR53_RS12585
location: 18195..18782
location: region:18195-18782:1
so has part: feature:18195-18782:1:exon

WP_068281306.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18195-18782:1:exon

AYR53_RS12590
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12590
old locus tag: AYR53_12585
so part of: sequence
location: 18795..19154
location: region:18795-19154:1
so has part: feature:18795-19154:1:exon
subclass of: SO_0000010

42983097
type: Gene
SIO_000068: ncbigene

position:18795:1
position: 18795
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19154:1
position: 19154
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18795-19154:1:exon

AYR53_RS12590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12590
old locus tag: AYR53_12585
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002340715.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDLDFETNKYELFDDWHQNKIKQAFTQKLQQQAQIEKTHLPKLLSREDLKIRWQMNSRQSVHQVASKPDFPQPVFAFNHGKTPLYLATEIQIFEINHPWVITPGARLAYSHWILRNVID
SIO_010081: AYR53_RS12590
subclass of: SO_0000673
so part of: AYR53_RS12590
location: 18795..19154
location: region:18795-19154:1
so has part: feature:18795-19154:1:exon

WP_068281305.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18795-19154:1:exon

AYR53_RS12595
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12595
old locus tag: AYR53_12590
so part of: sequence
location: 19422..19631
location: region:19422-19631:1
so has part: feature:19422-19631:1:exon
subclass of: SO_0000010

42983098
type: Gene
SIO_000068: ncbigene

position:19422:1
position: 19422
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19631:1
position: 19631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19422-19631:1:exon

AYR53_RS12595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12595
old locus tag: AYR53_12590
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013721072.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSQSNLEKQEAKLKQLNQKIKAEKNKIEQNLGKQIIRSANLDYGTLTTPQIKMIAKKVAAFLNQAQNNR
SIO_010081: AYR53_RS12595
subclass of: SO_0000673
so part of: AYR53_RS12595
location: 19422..19631
location: region:19422-19631:1
so has part: feature:19422-19631:1:exon

WP_021816943.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19422-19631:1:exon

AYR53_RS12600
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12600
old locus tag: AYR53_12595
so part of: sequence
location: 19651..19929
location: region:19651-19929:1
so has part: feature:19651-19929:1:exon
subclass of: SO_0000010

42983099
type: Gene
SIO_000068: ncbigene

position:19651:1
position: 19651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19929:1
position: 19929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19651-19929:1:exon

AYR53_RS12600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12600
old locus tag: AYR53_12595
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003603789.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPNQYEKLVEQQARLKQKIEQEDFKLRQSKYYENRQARKARSRRLIQKGALLEKYFQADNLSVEQTEELLKIFADYVNAHKPDKLKNDQPNN
SIO_010081: AYR53_RS12600
subclass of: SO_0000673
so part of: AYR53_RS12600
location: 19651..19929
location: region:19651-19929:1
so has part: feature:19651-19929:1:exon

WP_068226384.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19651-19929:1:exon

AYR53_RS12605
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12605
old locus tag: AYR53_12600
so part of: sequence
location: complement(20095..20802)
location: region:20095-20802:-1
so has part: feature:20095-20802:-1:exon
subclass of: SO_0000010

42983100
type: Gene
SIO_000068: ncbigene

position:20095:-1
position: 20095
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20802:-1
position: 20802
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20095-20802:-1:exon

AYR53_RS12605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12605
old locus tag: AYR53_12600
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005728426.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Fic family protein
translation: MAKTRTYMDKYKFTAAENQRFARANFTKLVHTNARFEGVNTTLPQTQTIMDGMSVAGVPVEDVLTIVNLKRGWQYITAQNSPLTLTMEKQINKIVAAEDALVPGELRQGKGGVDLGSEDFFEPPLINEKQEQSFLQKILADPGTTITDKALTVMYHNMRQQIFWDGNKRTATLSANKIMIDGGAGLINVPLDKWDQWNELIANYYQTNDMTKIKQWTYDNGIQGLQIRANKKIKC
SIO_010081: AYR53_RS12605
subclass of: SO_0000673
so part of: AYR53_RS12605
location: complement(20095..20802)
location: region:20095-20802:-1
so has part: feature:20095-20802:-1:exon

WP_100071711.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20095-20802:-1:exon

AYR53_RS12610
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12610
old locus tag: AYR53_12605
so part of: sequence
location: complement(20853..21050)
location: region:20853-21050:-1
so has part: feature:20853-21050:-1:exon
subclass of: SO_0000010

42983101
type: Gene
SIO_000068: ncbigene

position:20853:-1
position: 20853
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21050:-1
position: 21050
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20853-21050:-1:exon

AYR53_RS12610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12610
old locus tag: AYR53_12605
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003691009.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIKSSKEVETIDQLLADPWAVDIQDIWEQAAHNPDPDKRKLFDALHTYLLDKRQEQIINEKHFVI
SIO_010081: AYR53_RS12610
subclass of: SO_0000673
so part of: AYR53_RS12610
location: complement(20853..21050)
location: region:20853-21050:-1
so has part: feature:20853-21050:-1:exon

WP_068281304.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20853-21050:-1:exon

AYR53_RS12615
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12615
old locus tag: AYR53_12610
so part of: sequence
location: complement(21200..22300)
location: region:21200-22300:-1
so has part: feature:21200-22300:-1:exon
subclass of: SO_0000010

42983102
type: Gene
SIO_000068: ncbigene

position:21200:-1
position: 21200
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22300:-1
position: 22300
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21200-22300:-1:exon

AYR53_RS12615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12615
old locus tag: AYR53_12610
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013729138.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiator protein A
translation: MDQSNFNFTNAKRAYEVKFYALPQILLQGEKYKDLSDSAILLYSVLRDRLSYSLSNNWVDENNNVYFIYTNNELKDLRNWSNNKINKIKHELIDANLLYQKHMGFNPRSGKNEPNRLYLADLEVTAKDVYIKREPLKSPEPLGTSGLLKKRNPHDTVEPLGTNGLLKKRNPHDTVSDTSESLGTSGLLKKRQDLDYTNNLDTNRYNIDTQKLDFSTANFSPAEIQKQNQDLVNHANDFLTDEDSGLPVFLEPEAVQLLSFWCRTPQQMRRFIGIILNAKYRVEKDHQDIGVLIPLDDEELKPLMTKALRRYFNALRSNENHIKNVENYLYGTMQNLFGIWWNKQAAREYAAKHPEEQNTDNERSWN
SIO_010081: AYR53_RS12615
subclass of: SO_0000673
so part of: AYR53_RS12615
location: complement(21200..22300)
location: region:21200-22300:-1
so has part: feature:21200-22300:-1:exon

WP_068281303.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21200-22300:-1:exon