Loigolactobacillus backii strain TMW 1.1989 plasmid pL11989-1, complete sequence.
type: Entry
definition: Loigolactobacillus backii strain TMW 1.1989 plasmid pL11989-1, complete sequence.
sequence version: NZ_CP014874.1
sequence date: 2023-02-06
sequence: sequence
division: CON
label: NZ_CP014874.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN04505727
keyword: RefSeq
source: Loigolactobacillus backii
organism: Loigolactobacillus backii
taxonomy: Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Loigolactobacillus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP014874.1.\nSource DNA or bacteria available from the culture collection of the\nTechnische Mikrobiologie Weihenstephan upon request and only if\npermitted by a potential cooperation partner. Individual decisions.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Celera Assembler v. 1\nAssembly Name :: Lbackii11989-1\nLong Assembly Name :: Lactobacillus backii TMW 1.1989 1\nGenome Coverage :: 89\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/05/2023 23:00:11\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,668\nCDSs (total) :: 2,582\nGenes (coding) :: 2,526\nCDSs (with protein) :: 2,526\nGenes (RNA) :: 86\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 67\nncRNAs :: 4\nPseudo Genes (total) :: 56\nCDSs (without protein) :: 56\nPseudo Genes (ambiguous residues) :: 0 of 56\nPseudo Genes (frameshifted) :: 13 of 56\nPseudo Genes (incomplete) :: 36 of 56\nPseudo Genes (internal stop) :: 16 of 56\nPseudo Genes (multiple problems) :: 9 of 56\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 28996
topology: circular
so has quality: SO_0000988
location: 1..28996
location: region:1-28996:1
RO_0002162: 375175

NZ_CP014874
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN04505727
type: BioSample
SIO_000068: biosample

1
title: Pediococcus and Lactobacillus from brewery environment - whole genome sequencing and assembly
author: Behr, J.
author: Geissler, A.J.
author: Vogel, R.F.
journal: Unpublished

2
title: Direct Submission
author: Behr, J.
author: Geissler, A.J.
author: Vogel, R.F.
journal: Submitted (18-MAR-2016) Technische Mikrobiologie, Technische Universitaet Muenchen, Gregor-Mendel-Strasse 4, Freising, Bavaria 85354, Germany

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28996:1
position: 28996
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-28996:1:source
so part of: sequence
organism: Loigolactobacillus backii
mol type: genomic DNA
strain: TMW 1.1989
isolation source: beer
plasmid: pL11989-1
country: Germany

375175
type: Taxonomy
SIO_000068: taxonomy

AYR53_RS13890
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13890
old locus tag: AYR53_12295
so part of: sequence
location: 21..434
location: region:21-434:1
so has part: feature:21-434:1:exon
subclass of: SO_0000010

78079395
type: Gene
SIO_000068: ncbigene

position:21:1
position: 21
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:434:1
position: 434
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21-434:1:exon

AYR53_RS13890
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13890
old locus tag: AYR53_12295
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002820251.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phosphatase PAP2 family protein
translation: MKSTILLVEDEAGLADSLKTEFELENFNVFWANDGLIALDMFRQNEAQIDLIILDWMLPHIQDQETQLITVLIGIGWIAMVAISRVYLRDHYLSDVLASVCLASGWWLLVTPAEAFIQAKMRQFLPEGMLKSWPHQN
SIO_010081: AYR53_RS13890
subclass of: SO_0000673
so part of: AYR53_RS13890
location: 21..434
location: region:21-434:1
so has part: feature:21-434:1:exon

WP_046870789.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21-434:1:exon

AYR53_RS12305
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12305
old locus tag: AYR53_12300
so part of: sequence
location: 416..1363
location: region:416-1363:1
so has part: feature:416-1363:1:exon
subclass of: SO_0000010

42983043
type: Gene
SIO_000068: ncbigene

position:416:1
position: 416
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1363:1
position: 1363
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:416-1363:1:exon

AYR53_RS12305
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12305
old locus tag: AYR53_12300
EC number: 2.4.-.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016373351.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: glycosyltransferase family 2 protein
translation: MATSKLTIVVPAYNEEEVLTSSVQKLLAVEDQIAAQTVLGQRADILIVDDGSMDHTWDIIEKLHAMTSRVRGLRFSRNFGHQSALIAGMSEAVKTADMIVTIDADLQDDPDKIGDMVDAYADGADIVYGVRNNRETDSWFKRTTAQGYYKTLKLLGVELVPNHADFRLMSKRAVETFLQYPERNIFIRGLIPKLGFKTAEVFYKRTPRMAGESKYPLKKMLAFAWDGITSLTIAPVRLILILGTLSCLLAVGMVVYAIVMKMLGLTVHGWSLLMVSLWFVGGIQMISLGVIGEYIGKLTTEVKHRPRYTVQTILD
SIO_010081: AYR53_RS12305
subclass of: SO_0000673
so part of: AYR53_RS12305
location: 416..1363
location: region:416-1363:1
so has part: feature:416-1363:1:exon

WP_068281294.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:416-1363:1:exon

AYR53_RS12310
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12310
old locus tag: AYR53_12305
so part of: sequence
location: 1373..3307
location: region:1373-3307:1
so has part: feature:1373-3307:1:exon
subclass of: SO_0000010

42983044
type: Gene
SIO_000068: ncbigene

position:1373:1
position: 1373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3307:1
position: 3307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1373-3307:1:exon

AYR53_RS12310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12310
old locus tag: AYR53_12305
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003593321.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKIKPAFLPAILILCLLIGSIGNLTSVLGVPALLVVVLLGAGLYFGAPRLDHLSTRQLRWGIGLGLLAMLIAQVVVLHVMPNTVYHDPYRVLSQADQLAAGHMTWDITYFWRYANNVPLAYLLSLWLRLTQLVGLSTNLSVHLLSILVLDSFIALALHTIWQLSQRASLLVVAFGFFALSPFAYTYYLQVFYSDLPTMLVLLIIIRSLLNWSQKTSRQRWFAGSGLVVAVMLGAMLKPNLVVLLPALLIVGLILARQHLWRQAKLTLPILLIVLGFGLSLPATKVFDVAANYQPRTAFSFPATHWILMGYNQHSNGGYSGKDVGRAIKQPSQADRQRYNLKTIPKRIKTLGVVGVIRLWVVKLGIVLNVQGIQRWYNGGFRAAPSWYSNHAGFYQGLTVIGYVAATLLMWGALMLKLLRWRPDLTDPHQILALLAVTTALGYLAFHTLLWEVEPRYGQAILPLLWVALAAIPRQASQSRPRWANQASLLNGATASLVAFGAAGVLGAQLPQKQVIAAQRSQLSVQYHAKPKTVTPGTVLAEVVDVNAPANYFSVQIHAGSQVQVTLTNLATGQHYRLTMAGSVARLHHQLAAGQYRITVQNLTTRGQQVDVTHTYHYQLAAHPLTVNGQSQPTASLIYTCMQR
SIO_010081: AYR53_RS12310
subclass of: SO_0000673
so part of: AYR53_RS12310
location: 1373..3307
location: region:1373-3307:1
so has part: feature:1373-3307:1:exon

WP_057877478.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1373-3307:1:exon

AYR53_RS12315
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12315
old locus tag: AYR53_12310
so part of: sequence
location: 3323..3727
location: region:3323-3727:1
so has part: feature:3323-3727:1:exon
subclass of: SO_0000010

42983045
type: Gene
SIO_000068: ncbigene

position:3323:1
position: 3323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3727:1
position: 3727
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3323-3727:1:exon

AYR53_RS12315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12315
old locus tag: AYR53_12310
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016373353.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GtrA family protein
translation: MEKPITTLYSKYDTALRYLIVGGLTTGINVVLFFGLTHLAMPWFWANIIAWVLSVLFAFIANKKVVFNSADMTFRTVVKEGASFFTLRGASLLADTAILFIGLTLMHGSPLIVKLIDQVVVIVLNYGFSKLIFA
SIO_010081: AYR53_RS12315
subclass of: SO_0000673
so part of: AYR53_RS12315
location: 3323..3727
location: region:3323-3727:1
so has part: feature:3323-3727:1:exon

WP_011178835.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3323-3727:1:exon

AYR53_RS12320
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12320
old locus tag: AYR53_12315
pseudo: true
so part of: sequence
location: complement(<3926..4285)
location: region:3926-4285:-1
so has part: feature:3926-4285:-1:exon
subclass of: SO_0000010

42983046
type: Gene
SIO_000068: ncbigene

position:3926:-1
position: 3926
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:4285:-1
position: 4285
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3926-4285:-1:exon

AYR53_RS12320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12320
old locus tag: AYR53_12315
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003603791.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: MobA/MobL family protein
SIO_010081: AYR53_RS12320
subclass of: SO_0000673
so part of: AYR53_RS12320
location: complement(<3926..4285)
location: region:3926-4285:-1
so has part: feature:3926-4285:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3926-4285:-1:exon

AYR53_RS12325
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12325
old locus tag: AYR53_12320
so part of: sequence
location: 4573..4782
location: region:4573-4782:1
so has part: feature:4573-4782:1:exon
subclass of: SO_0000010

42983047
type: Gene
SIO_000068: ncbigene

position:4573:1
position: 4573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4782:1
position: 4782
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4573-4782:1:exon

AYR53_RS12325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12325
old locus tag: AYR53_12320
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015474621.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSQSNLEKQEAKLKQLNQKIKAEKNKIEQNLGKQIIRSANLDYGTLTTPQIKMIAKKVAAFLNQAQNNQ
SIO_010081: AYR53_RS12325
subclass of: SO_0000673
so part of: AYR53_RS12325
location: 4573..4782
location: region:4573-4782:1
so has part: feature:4573-4782:1:exon

WP_050894606.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4573-4782:1:exon

AYR53_RS13685
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13685
old locus tag: AYR53_12325
pseudo: true
so part of: sequence
location: 4802..5080
location: region:4802-5080:1
so has part: feature:4802-5080:1:exon
subclass of: SO_0000010

77610006
type: Gene
SIO_000068: ncbigene

position:4802:1
position: 4802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5080:1
position: 5080
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4802-5080:1:exon

AYR53_RS13685
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13685
old locus tag: AYR53_12325
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003603789.1
note: internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: hypothetical protein
SIO_010081: AYR53_RS13685
subclass of: SO_0000673
so part of: AYR53_RS13685
location: 4802..5080
location: region:4802-5080:1
so has part: feature:4802-5080:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4802-5080:1:exon

AYR53_RS12335
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12335
old locus tag: AYR53_12330
so part of: sequence
location: complement(5157..5891)
location: region:5157-5891:-1
so has part: feature:5157-5891:-1:exon
subclass of: SO_0000010

42983048
type: Gene
SIO_000068: ncbigene

position:5157:-1
position: 5157
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5891:-1
position: 5891
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5157-5891:-1:exon

AYR53_RS12335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12335
old locus tag: AYR53_12330
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014564422.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Fic family protein
translation: MAKTRTYMDKYKFTAAENQRFARANFTKLVHTNARFEGVNTTLPQTQTIMDGMSVAGVPVEDVLTIVNLKRGWQYITAQNSPLTLTMEKQINKIVAAEDALVPGELRQGKGGVNLGSDDFFEQPLINEKQEQSFLQKILADPRTTITDKALTVMYHNMRQQIFWDGNKRTATLSANKIMIDGGAGLINVPLDKWDQWNELIANYYRTNDMAKIKRWTYDNGIQGLQIRANLALKSVKDKTSKRI
SIO_010081: AYR53_RS12335
subclass of: SO_0000673
so part of: AYR53_RS12335
location: complement(5157..5891)
location: region:5157-5891:-1
so has part: feature:5157-5891:-1:exon

WP_046870851.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5157-5891:-1:exon

AYR53_RS12340
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12340
old locus tag: AYR53_12335
so part of: sequence
location: complement(5942..6139)
location: region:5942-6139:-1
so has part: feature:5942-6139:-1:exon
subclass of: SO_0000010

42983049
type: Gene
SIO_000068: ncbigene

position:5942:-1
position: 5942
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6139:-1
position: 6139
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5942-6139:-1:exon

AYR53_RS12340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12340
old locus tag: AYR53_12335
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003691009.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTKPSKEIETIDQLLADPWAVNIQDIWEQAAHNPDPDKRKLFDALHTYLLDKRQEQIINEKHFVI
SIO_010081: AYR53_RS12340
subclass of: SO_0000673
so part of: AYR53_RS12340
location: complement(5942..6139)
location: region:5942-6139:-1
so has part: feature:5942-6139:-1:exon

WP_054712554.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5942-6139:-1:exon

AYR53_RS12345
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12345
old locus tag: AYR53_12340
so part of: sequence
location: complement(6294..7397)
location: region:6294-7397:-1
so has part: feature:6294-7397:-1:exon
subclass of: SO_0000010

42983050
type: Gene
SIO_000068: ncbigene

position:6294:-1
position: 6294
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7397:-1
position: 7397
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6294-7397:-1:exon

AYR53_RS12345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12345
old locus tag: AYR53_12340
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016527414.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiator protein A
translation: MTKSTDFNYYDANSVYGSLFFQFPKVLMYGEQYKHLSDAAKLAYMVLKDRLEYSLRNHWIDEEGHVYFIFTNQELKDLFDCSNDKLAAVKKDLERAGLLYQKAMHFNPKTGKNEPNRLYLAELDMQSTDVYLRGEYAQKEPQTLATSENPKIGRSRETVGTLATSENPKIGHSRKFVDNTPQTLATSENPKIGHDLDKELKERDTNRYNIDTQKLDFSTAHFSPAEIQKQNQDLVNHANDFLTDEDSGLPVFLEPEAVQLLSFWCRTPQQMRRFIGIILNAKYRVEKDHQDIGVIIPLYDEELKPLMTKALRRYFNALRSNEKHIKNVENYLYGTMQNLFGVWWNKQAAREYAAKHPEEQNTDNERS
SIO_010081: AYR53_RS12345
subclass of: SO_0000673
so part of: AYR53_RS12345
location: complement(6294..7397)
location: region:6294-7397:-1
so has part: feature:6294-7397:-1:exon

WP_068281295.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6294-7397:-1:exon

AYR53_RS12350
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12350
old locus tag: AYR53_12345
so part of: sequence
location: 7976..8761
location: region:7976-8761:1
so has part: feature:7976-8761:1:exon
subclass of: SO_0000010

42983051
type: Gene
SIO_000068: ncbigene

position:7976:1
position: 7976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8761:1
position: 8761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7976-8761:1:exon

AYR53_RS12350
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12350
old locus tag: AYR53_12345
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003649838.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MNGKTLLNFNFKGGVGKTTLTVMETYLLGQEGKKVLLIDFDPQGNATEIMKETYKADLKPELSLYEGLLGGNLSKSIVSVTNQIDMIPTDWTLSLWIGAVEKVSRVKRNILLPQMLSKLKQNYDYIFIDVPPTINVFTNNAIMASDFISIVLQTQKQSYTSSLKTATHLGELREQYNGSFQLVGAILYLMKPRAKVDTEISAQAKDFFGEGVFSNSIRTQERVKTFANEGIRNKDHWDKRAIQMYQMVLNEQILRIQQLEE
SIO_010081: AYR53_RS12350
subclass of: SO_0000673
so part of: AYR53_RS12350
location: 7976..8761
location: region:7976-8761:1
so has part: feature:7976-8761:1:exon

WP_017866972.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7976-8761:1:exon

AYR53_RS12355
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12355
old locus tag: AYR53_12350
so part of: sequence
location: 8768..8983
location: region:8768-8983:1
so has part: feature:8768-8983:1:exon
subclass of: SO_0000010

42983052
type: Gene
SIO_000068: ncbigene

position:8768:1
position: 8768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8983:1
position: 8983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8768-8983:1:exon

AYR53_RS12355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12355
old locus tag: AYR53_12350
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003649837.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAEDFLNKVSKKASEQLKNLKSPYQFETERTKTVQLRMSTYKEVKRIAFENDEKIVDVLEKIIREGLAKRK
SIO_010081: AYR53_RS12355
subclass of: SO_0000673
so part of: AYR53_RS12355
location: 8768..8983
location: region:8768-8983:1
so has part: feature:8768-8983:1:exon

WP_003649837.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8768-8983:1:exon

AYR53_RS12360
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12360
old locus tag: AYR53_12355
pseudo: true
so part of: sequence
location: 9270..10508
location: region:9270-10508:1
so has part: feature:9270-10508:1:exon
subclass of: SO_0000010

42983053
type: Gene
SIO_000068: ncbigene

position:9270:1
position: 9270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10508:1
position: 10508
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9270-10508:1:exon

AYR53_RS12360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12360
old locus tag: AYR53_12355
inference: COORDINATES: similar to AA sequence:RefSeq:WP_050892470.1
note: internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: ISL3-like element IS1165 family transposase
SIO_010081: AYR53_RS12360
subclass of: SO_0000673
so part of: AYR53_RS12360
location: 9270..10508
location: region:9270-10508:1
so has part: feature:9270-10508:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9270-10508:1:exon

AYR53_RS12365
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12365
old locus tag: AYR53_12360
so part of: sequence
location: complement(10739..12103)
location: region:10739-12103:-1
so has part: feature:10739-12103:-1:exon
subclass of: SO_0000010

42983054
type: Gene
SIO_000068: ncbigene

position:10739:-1
position: 10739
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12103:-1
position: 12103
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10739-12103:-1:exon

AYR53_RS12365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12365
old locus tag: AYR53_12360
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020807835.1
GO function: GO:0016491 - oxidoreductase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: FAD-dependent oxidoreductase
translation: MDKRKIVIVGASHGGHESAIELLDKYNDVDVTVYEAGDFISFMSCGMQLYLENKVTAEDDVRNFAPEDVEKKGGHVYANHEVTAIHPEHKTVTVKDLTNNSEEEVQYDKLILSSGVTPKFLPVPGNDLKNIYLMRGRDWASKLMSAVNNPAIKNVAIVGAGYIGTEASEVFAKAGKHVTLMDMIDRPLGTYLNPELLDVLEPTFKKNMDLKMGVKIEGFNGNEKVESVKTDQGDIPADLVVVSAGVTPNTDWIKGTVDLDQRGWIKTDPYLRTNVKDVYAIGDAILPLSIPAGKPMPIALATTARREAQYVVDHIFEDKPDRAFKGVIGASALSVFDYHFATAGLNKFSAAKNKLDYQTSFYEDHMRPAYVPEADNPKVYVSLTFNPYTHQILGGAVLSKYDITAQGNVLALAISHKMRLEDLAEQDFFFQPGFDRQWSLLNLAAQHALGMARF
SIO_010081: AYR53_RS12365
subclass of: SO_0000673
so part of: AYR53_RS12365
location: complement(10739..12103)
location: region:10739-12103:-1
so has part: feature:10739-12103:-1:exon

WP_068281289.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10739-12103:-1:exon

AYR53_RS13565
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13565
old locus tag: AYR53_12365
pseudo: true
so part of: sequence
location: complement(12235..>12453)
location: region:12235-12453:-1
so has part: feature:12235-12453:-1:exon
subclass of: SO_0000010

42983270
type: Gene
SIO_000068: ncbigene

position:12235:-1
position: 12235
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12453:-1
position: 12453
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12235-12453:-1:exon

AYR53_RS13565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13565
old locus tag: AYR53_12365
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013854137.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: pyridoxamine 5'-phosphate oxidase family protein
SIO_010081: AYR53_RS13565
subclass of: SO_0000673
so part of: AYR53_RS13565
location: complement(12235..>12453)
location: region:12235-12453:-1
so has part: feature:12235-12453:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12235-12453:-1:exon

AYR53_RS13570
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS13570
old locus tag: AYR53_12370
pseudo: true
so part of: sequence
location: complement(<12457..12630)
location: region:12457-12630:-1
so has part: feature:12457-12630:-1:exon
subclass of: SO_0000010

42983271
type: Gene
SIO_000068: ncbigene

position:12457:-1
position: 12457
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:12630:-1
position: 12630
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12457-12630:-1:exon

AYR53_RS13570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS13570
old locus tag: AYR53_12370
inference: COORDINATES: similar to AA sequence:RefSeq:WP_053338758.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
SIO_010081: AYR53_RS13570
subclass of: SO_0000673
so part of: AYR53_RS13570
location: complement(<12457..12630)
location: region:12457-12630:-1
so has part: feature:12457-12630:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12457-12630:-1:exon

AYR53_RS12380
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12380
old locus tag: AYR53_12375
so part of: sequence
location: complement(12731..13147)
location: region:12731-13147:-1
so has part: feature:12731-13147:-1:exon
subclass of: SO_0000010

42983055
type: Gene
SIO_000068: ncbigene

position:12731:-1
position: 12731
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13147:-1
position: 13147
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12731-13147:-1:exon

AYR53_RS12380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12380
old locus tag: AYR53_12375
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017260569.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cupin domain-containing protein
translation: MANEKFETQNVFGQGNKNDAYAQYFIGQSYLKNLVSSDDNVNVNVGNVTFEPGCRNDWHIHHNGYQILLVTGGEGWYQEDGKPAQLLHPGDVVTIHDGVKHWHGATKDSWFSHVAITTGTSEWLEPVSDVAYDALSKD
SIO_010081: AYR53_RS12380
subclass of: SO_0000673
so part of: AYR53_RS12380
location: complement(12731..13147)
location: region:12731-13147:-1
so has part: feature:12731-13147:-1:exon

WP_056986391.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12731-13147:-1:exon

AYR53_RS12385
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12385
old locus tag: AYR53_12380
so part of: sequence
location: complement(13147..13485)
location: region:13147-13485:-1
so has part: feature:13147-13485:-1:exon
subclass of: SO_0000010

42983056
type: Gene
SIO_000068: ncbigene

position:13485:-1
position: 13485
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13147-13485:-1:exon

AYR53_RS12385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12385
old locus tag: AYR53_12380
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010021054.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: carboxymuconolactone decarboxylase family protein
translation: MAKKQTAGRKQLGDFAPQFAALNDDVLFGEVWSKEDALSAHDRSLITIASIISAGNTEQLEAHLRIGKQNGITKDEIVAEITHLAFYAGWPKAWSAFNRAKEIWSDEEETHK
SIO_010081: AYR53_RS12385
subclass of: SO_0000673
so part of: AYR53_RS12385
location: complement(13147..13485)
location: region:13147-13485:-1
so has part: feature:13147-13485:-1:exon

WP_017260570.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13147-13485:-1:exon

AYR53_RS12390
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12390
old locus tag: AYR53_12385
so part of: sequence
location: complement(13947..14390)
location: region:13947-14390:-1
so has part: feature:13947-14390:-1:exon
subclass of: SO_0000010

42983057
type: Gene
SIO_000068: ncbigene

position:13947:-1
position: 13947
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14390:-1
position: 14390
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13947-14390:-1:exon

AYR53_RS12390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12390
old locus tag: AYR53_12385
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017260571.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MerR family transcriptional regulator
translation: MATKTAVTEKRYRIGEFATKTGLSGPTLRYYEKEGLVKPHRSDNGLRYYTDADASWIKFLLHLKGTGMTIEQLKQYVAWRAEGDATITKRLQLLKNVRRGFLQEFEELQHSMTILNDKIDWYQGKVDGHISDNEGFANYLASLNHEE
SIO_010081: AYR53_RS12390
subclass of: SO_0000673
so part of: AYR53_RS12390
location: complement(13947..14390)
location: region:13947-14390:-1
so has part: feature:13947-14390:-1:exon

WP_046871958.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13947-14390:-1:exon

AYR53_RS12395
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12395
old locus tag: AYR53_12390
so part of: sequence
location: complement(14481..14804)
location: region:14481-14804:-1
so has part: feature:14481-14804:-1:exon
subclass of: SO_0000010

42983058
type: Gene
SIO_000068: ncbigene

position:14481:-1
position: 14481
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14804:-1
position: 14804
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14481-14804:-1:exon

AYR53_RS12395
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12395
old locus tag: AYR53_12390
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017260572.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: multidrug efflux SMR transporter
translation: MGYVYLALAIVGELIGTNLLKASSGFTLLWPSLGALIAYGTCFYFLAVCMKTVNLNIAYALWAGIGVVLSTLVAVLFWKEPVNLANVIGIGFILVGVVILNLFGANG
SIO_010081: AYR53_RS12395
subclass of: SO_0000673
so part of: AYR53_RS12395
location: complement(14481..14804)
location: region:14481-14804:-1
so has part: feature:14481-14804:-1:exon

WP_046871959.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14481-14804:-1:exon

AYR53_RS12400
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12400
old locus tag: AYR53_12395
pseudo: true
so part of: sequence
location: complement(<15128..15844)
location: region:15128-15844:-1
so has part: feature:15128-15844:-1:exon
subclass of: SO_0000010

42983059
type: Gene
SIO_000068: ncbigene

position:15128:-1
position: 15128
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:15844:-1
position: 15844
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15128-15844:-1:exon

AYR53_RS12400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12400
old locus tag: AYR53_12395
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008215184.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DUF1003 domain-containing protein
SIO_010081: AYR53_RS12400
subclass of: SO_0000673
so part of: AYR53_RS12400
location: complement(<15128..15844)
location: region:15128-15844:-1
so has part: feature:15128-15844:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15128-15844:-1:exon

AYR53_RS12405
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12405
old locus tag: AYR53_12400
so part of: sequence
location: complement(16169..16906)
location: region:16169-16906:-1
so has part: feature:16169-16906:-1:exon
subclass of: SO_0000010

42983060
type: Gene
SIO_000068: ncbigene

position:16169:-1
position: 16169
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16906:-1
position: 16906
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16169-16906:-1:exon

AYR53_RS12405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12405
old locus tag: AYR53_12400
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016384005.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS30 family transposase
translation: MQKQDSTHRQKGQHLTSLERGKVAGFRQAGKSNRWIAAEIGRLEIRNIDLLEKTKRKTSHQHHTKAKRLAGRSIEERPKVVERRRQFGHWEMDTIVGKRNGKESVILTLIERKTRCQLLRLIEGRDADSVSYALRGIKREWGACIKTITADNGPEFTALNTAFAGTETEIFYAHPYTSCDRGTNEAHNRMIRQDFPKGMSLDDISPSQVQATQDRLNQLPRKQQGYCTPQQNFEAEARRVRRMAQ
SIO_010081: AYR53_RS12405
subclass of: SO_0000673
so part of: AYR53_RS12405
location: complement(16169..16906)
location: region:16169-16906:-1
so has part: feature:16169-16906:-1:exon

WP_056986395.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16169-16906:-1:exon

AYR53_RS12410
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12410
old locus tag: AYR53_12405
pseudo: true
so part of: sequence
location: complement(<17026..17361)
location: region:17026-17361:-1
so has part: feature:17026-17361:-1:exon
subclass of: SO_0000010

42983061
type: Gene
SIO_000068: ncbigene

position:17026:-1
position: 17026
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:17361:-1
position: 17361
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17026-17361:-1:exon

AYR53_RS12410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12410
old locus tag: AYR53_12405
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002823700.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: type II toxin-antitoxin system PemK/MazF family toxin
SIO_010081: AYR53_RS12410
subclass of: SO_0000673
so part of: AYR53_RS12410
location: complement(<17026..17361)
location: region:17026-17361:-1
so has part: feature:17026-17361:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17026-17361:-1:exon

AYR53_RS12415
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12415
old locus tag: AYR53_12410
so part of: sequence
location: complement(17351..17632)
location: region:17351-17632:-1
so has part: feature:17351-17632:-1:exon
subclass of: SO_0000010

42983062
type: Gene
SIO_000068: ncbigene

position:17351:-1
position: 17351
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17632:-1
position: 17632
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17351-17632:-1:exon

AYR53_RS12415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12415
old locus tag: AYR53_12410
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005693113.1
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelB/DinJ family antitoxin
translation: MAVKEKKRVQVKIDKDLADDTEAVLSELGLNPTTAINMFYKRIVANGALPFNASLSEEERANLRFLKATEGTPVTEFKDAKEVADWLNDPDED
SIO_010081: AYR53_RS12415
subclass of: SO_0000673
so part of: AYR53_RS12415
location: complement(17351..17632)
location: region:17351-17632:-1
so has part: feature:17351-17632:-1:exon

WP_002819873.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17351-17632:-1:exon

AYR53_RS12420
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12420
old locus tag: AYR53_12415
so part of: sequence
location: complement(17885..18193)
location: region:17885-18193:-1
so has part: feature:17885-18193:-1:exon
subclass of: SO_0000010

42983063
type: Gene
SIO_000068: ncbigene

position:17885:-1
position: 17885
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18193:-1
position: 18193
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17885-18193:-1:exon

AYR53_RS12420
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12420
old locus tag: AYR53_12415
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003603776.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRRFVGIILNAKYRVEKDHKDIGVIIPLDDEELKFLMTKALRRYFNALRSNEKHIKNVENYLYGTMQNLFGVWWNKQAAREYAAKRPEEEKSADNDNSGLYY
SIO_010081: AYR53_RS12420
subclass of: SO_0000673
so part of: AYR53_RS12420
location: complement(17885..18193)
location: region:17885-18193:-1
so has part: feature:17885-18193:-1:exon

WP_062916866.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17885-18193:-1:exon

AYR53_RS12430
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12430
old locus tag: AYR53_12425
so part of: sequence
location: 19733..20542
location: region:19733-20542:1
so has part: feature:19733-20542:1:exon
subclass of: SO_0000010

42983065
type: Gene
SIO_000068: ncbigene

position:19733:1
position: 19733
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20542:1
position: 20542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19733-20542:1:exon

AYR53_RS12430
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12430
old locus tag: AYR53_12425
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010623287.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MTQTITFGNFKGGVGKTSNSTLVALDLSNRGYKTLLVDLDPQGNATNLLLNTKVNIDGKVGHFKKSLMASIEDGDLTQSLIHIKENFDILASAPDFALFPRYMEKIKDYNERVKEFSNLIKPIKDKYDYVIIDTPPTISLITDSALYASDYCVIVMQTHEHSFEGAQAFIEYIQEQVIDTYKAPRLEIVGILAVLLQAGAPVDEATIQNAINQFGTENIFKHKIHSMQRIKRYGITGITFNTQFDRRVFKVYKDVTDEMLKRMEAIENG
SIO_010081: AYR53_RS12430
subclass of: SO_0000673
so part of: AYR53_RS12430
location: 19733..20542
location: region:19733-20542:1
so has part: feature:19733-20542:1:exon

WP_015474642.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19733-20542:1:exon

AYR53_RS12435
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12435
old locus tag: AYR53_12430
so part of: sequence
location: 20535..20864
location: region:20535-20864:1
so has part: feature:20535-20864:1:exon
subclass of: SO_0000010

42983066
type: Gene
SIO_000068: ncbigene

position:20535:1
position: 20535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20864:1
position: 20864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20535-20864:1:exon

AYR53_RS12435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12435
old locus tag: AYR53_12430
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004466180.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF5388 domain-containing protein
translation: MANKLIRSNRNPIKPDKQAEISDFSNSNKGIKTPQNQVASVTFDTNLKINNHIRNKLQAMAVLGYSDNQKAAIEVALSVYIESLTSDERKELEFQIDSLEKRDVRVKSK
SIO_010081: AYR53_RS12435
subclass of: SO_0000673
so part of: AYR53_RS12435
location: 20535..20864
location: region:20535-20864:1
so has part: feature:20535-20864:1:exon

WP_041816175.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20535-20864:1:exon

AYR53_RS12440
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12440
old locus tag: AYR53_12435
so part of: sequence
location: complement(21109..21603)
location: region:21109-21603:-1
so has part: feature:21109-21603:-1:exon
subclass of: SO_0000010

42983067
type: Gene
SIO_000068: ncbigene

position:21109:-1
position: 21109
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21603:-1
position: 21603
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21109-21603:-1:exon

AYR53_RS12440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12440
old locus tag: AYR53_12435
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015474644.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RepB family protein
translation: MVDLTTIAEISKDLHISRARIYQIIDSLDDKDKPLKDSDNKYILSQDVVNAIHQYYANNTNKDRQDKSTSSNDQLVNILRRQLDEKDQQINKFQKLLDQQQQLNLSSQKLLENQKSEQNIKSNTVQSRENDSKGDSNDSDTNISKQNEKPSNETRENFWKRLFR
SIO_010081: AYR53_RS12440
subclass of: SO_0000673
so part of: AYR53_RS12440
location: complement(21109..21603)
location: region:21109-21603:-1
so has part: feature:21109-21603:-1:exon

WP_065937735.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21109-21603:-1:exon

AYR53_RS12445
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12445
old locus tag: AYR53_12440
so part of: sequence
location: 21858..22787
location: region:21858-22787:1
so has part: feature:21858-22787:1:exon
subclass of: SO_0000010

42983068
type: Gene
SIO_000068: ncbigene

position:21858:1
position: 21858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22787:1
position: 22787
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21858-22787:1:exon

AYR53_RS12445
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12445
old locus tag: AYR53_12440
inference: COORDINATES: similar to AA sequence:RefSeq:WP_053338758.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS30-like element ISLpl1 family transposase
translation: MSSITYSERIKIETFCELGLSNIQMGVRLNRSPSTISYELSRCQPYQAELAQTDAEYKRSRCGRKTKLSDELKQKILNHLRLSWSPGMIAHEFKLATKSIYNWLNQGRIGFPLNDLPEHGVRQRRNVDQRSKYNQSLGRSIEQRPMMINQRNRIGNFELDTVVGPRGHSKAVLLTLIDRKSRFLWAYRLKDRTTATVNEALTKFLTTFNGPVHSFTVDRGTEFSGLVSLESQYGIKTYYCHAYTPAERGSNERFNRNLRYFYPKGTRFEHISAQDLTTTLLQINQRPLKILDWQTPYQVMLTNLSKNSD
SIO_010081: AYR53_RS12445
subclass of: SO_0000673
so part of: AYR53_RS12445
location: 21858..22787
location: region:21858-22787:1
so has part: feature:21858-22787:1:exon

WP_068281291.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21858-22787:1:exon

AYR53_RS12450
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12450
old locus tag: AYR53_12445
so part of: sequence
location: 22949..23572
location: region:22949-23572:1
so has part: feature:22949-23572:1:exon
subclass of: SO_0000010

42983069
type: Gene
SIO_000068: ncbigene

position:22949:1
position: 22949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23572:1
position: 23572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22949-23572:1:exon

AYR53_RS12450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12450
old locus tag: AYR53_12445
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002831177.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MarC family protein
translation: MHLVQAFLLSFTAFFAIMNPFANLPMFVSLTADNSRKEINAIARLAFIVATVIVVLFAFLGNYIFTIFGINLAALRIMGGIILGLIGYHMIQGNVSPIQHDPEKSVKDSVNSSNTNVAISPLAMPILAGPGTIATTMNLASGTNPFIVVAAFVVLAVIAYFIFIYGEQIMDKLGNNIMNVITKLMGLILATIGVKMLIVGVQAAFHL
SIO_010081: AYR53_RS12450
subclass of: SO_0000673
so part of: AYR53_RS12450
location: 22949..23572
location: region:22949-23572:1
so has part: feature:22949-23572:1:exon

WP_002829857.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22949-23572:1:exon

AYR53_RS12455
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12455
old locus tag: AYR53_12450
pseudo: true
so part of: sequence
location: complement(23816..>24178)
location: region:23816-24178:-1
so has part: feature:23816-24178:-1:exon
subclass of: SO_0000010

42983070
type: Gene
SIO_000068: ncbigene

position:23816:-1
position: 23816
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24178:-1
position: 24178
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23816-24178:-1:exon

AYR53_RS12455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12455
old locus tag: AYR53_12450
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005919512.1
GO process: GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: SufD family Fe-S cluster assembly protein
SIO_010081: AYR53_RS12455
subclass of: SO_0000673
so part of: AYR53_RS12455
location: complement(23816..>24178)
location: region:23816-24178:-1
so has part: feature:23816-24178:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:23816-24178:-1:exon

AYR53_RS12460
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12460
old locus tag: AYR53_12455
so part of: sequence
location: complement(24252..24857)
location: region:24252-24857:-1
so has part: feature:24252-24857:-1:exon
subclass of: SO_0000010

42983071
type: Gene
SIO_000068: ncbigene

position:24252:-1
position: 24252
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24857:-1
position: 24857
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24252-24857:-1:exon

AYR53_RS12460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12460
old locus tag: AYR53_12455
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013729126.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MATIGYARVSSKEQHLDRQLNALKNVDKLFTDKLSGATTNRPELQKMLAYIREGDIVLVTELDRLGRNNQDLTKIMNSIQDKGATLDVLNLPSMTGISDPNLRQLMTNLIIELYKYQAESERKRIIERQQQGIALAKQQGKYHGRKAQYNQDDPRLQHAFKLYQAGMSDVDVARNTGIKRTTFIRYRKKFKIVRGGVHEAT
SIO_010081: AYR53_RS12460
subclass of: SO_0000673
so part of: AYR53_RS12460
location: complement(24252..24857)
location: region:24252-24857:-1
so has part: feature:24252-24857:-1:exon

WP_024855745.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24252-24857:-1:exon

AYR53_RS12465
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12465
old locus tag: AYR53_12460
so part of: sequence
location: complement(25239..25787)
location: region:25239-25787:-1
so has part: feature:25239-25787:-1:exon
subclass of: SO_0000010

42983072
type: Gene
SIO_000068: ncbigene

position:25239:-1
position: 25239
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25787:-1
position: 25787
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25239-25787:-1:exon

AYR53_RS12465
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12465
old locus tag: AYR53_12460
inference: COORDINATES: protein motif:HMM:NF012655.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TetR/AcrR family transcriptional regulator
translation: MTDLRNKRTEMLIENSFIQLVRQQGFNNVSVIDISNKALINRQTFYRHYQDKYHLAAKMIQDFVSTYDSVLKKRSNLNKQNQNFLSITSILAPDIKNLLIKQREKILALRSIQLDSKDFSSEIKRVLRNNLVSMLEEKPDKFEMSLLTSLILGSFNYLIDEQELPDTSQIQHAITGILCLIS
SIO_010081: AYR53_RS12465
subclass of: SO_0000673
so part of: AYR53_RS12465
location: complement(25239..25787)
location: region:25239-25787:-1
so has part: feature:25239-25787:-1:exon

WP_068281292.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25239-25787:-1:exon

AYR53_RS12470
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12470
old locus tag: AYR53_12465
so part of: sequence
location: 25952..27214
location: region:25952-27214:1
so has part: feature:25952-27214:1:exon
subclass of: SO_0000010

42983073
type: Gene
SIO_000068: ncbigene

position:25952:1
position: 25952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27214:1
position: 27214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25952-27214:1:exon

AYR53_RS12470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12470
old locus tag: AYR53_12465
inference: COORDINATES: protein motif:HMM:NF024110.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter permease
translation: MFDVIRSKRYWLALLLVGAIIGIVSFALIGIRNSVKVKQIPVALVNEDKGTLSNKIESKLRKKFNGKDSKIKWVSPQKDGFNDQKYYGAFIIRSGFSKELQQQNESLKAQIISQKLTTLQKKEELPDSAKSQLLQAKFVTQKPVHPAQIKISINQGMNAQISQLLSQALPQIANALSSRISAQQQSVLSKNKINLSAKSWDLVSTPISVSTHESNKIEKNTVNGTAPMLLVALAWFSALIPSLILWREHTKRSASKFLNATTITSQLITGLVASILSATVGFLFVNVCFNLTIPNPINFIGLMSISIFVFYLIITCVLDWLGFAFYPLLLVVWFLASSVMSYAPEALDPLYRKGIYSWVPMRFSMQTLTNTLYFHNGSSTTMSSLLVLLIIGFVAAILMYSSGYLKHYLFTVRPHRKINN
SIO_010081: AYR53_RS12470
subclass of: SO_0000673
so part of: AYR53_RS12470
location: 25952..27214
location: region:25952-27214:1
so has part: feature:25952-27214:1:exon

WP_068281293.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25952-27214:1:exon

AYR53_RS12475
type: Gene
subclass of: SO_0000704
RO_0002162: 375175
locus tag: AYR53_RS12475
old locus tag: AYR53_12470
so part of: sequence
location: complement(28028..28945)
location: region:28028-28945:-1
so has part: feature:28028-28945:-1:exon
subclass of: SO_0000010

42983074
type: Gene
SIO_000068: ncbigene

position:28028:-1
position: 28028
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28945:-1
position: 28945
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28028-28945:-1:exon

AYR53_RS12475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 375175
locus tag: AYR53_RS12475
old locus tag: AYR53_12470
inference: COORDINATES: similar to AA sequence:RefSeq:WP_032488692.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS30 family transposase
translation: MTSLSSQERTVIQTLLELNYSIRAIARFINRSPATVSVEIHQVTPYKADIAHALALKKRHLRGRHHTLTPAIAVFLNEHIGILKWSPETAAHVLGLPFKTIYNWLNAGRLKLSLADLPDKGIRQKRQSDGRRQVFVHGRSIESRPKSVQARQDFGHFEVDTMQSGKKRGEVLVTITERLSRQHIVRQVSGRNSQAVTPVLIHFFQGIENAKSITVDRGREFVKYDEIEQKLGIPVYFAHPYSPEERGSNEILNRYVRRFIPKERKIETVSAKELDQINHWINARPMKTLNWQSPRKVFQQFAVFG
SIO_010081: AYR53_RS12475
subclass of: SO_0000673
so part of: AYR53_RS12475
location: complement(28028..28945)
location: region:28028-28945:-1
so has part: feature:28028-28945:-1:exon

WP_046870788.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28028-28945:-1:exon