Flammeovirga kamogawensis strain YS10 plasmid p2, complete sequence.
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Flammeovirgaceae; Flammeovirga.
Comparative genomic studies on the polysaccharide-degrading batcterial strains of the Flammeovirga genus
Submitted (29-MAY-2021) Shandong University, National Glycoengineering Research Center, No. 72, Binhai Road, Jimo District, Qingdao, Shandong 266237, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP076131.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 01-APR-2021\nAssembly Method :: Unicycler v. 0.4.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 480.0x\nSequencing Technology :: PacBio; Illumina NovaSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/06/2022 22:59:26\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 5,396\nCDSs (total) :: 5,264\nGenes (coding) :: 5,245\nCDSs (with protein) :: 5,245\nGenes (RNA) :: 132\nrRNAs :: 10, 10, 10 (5S, 16S, 23S)\ncomplete rRNAs :: 10, 10, 10 (5S, 16S, 23S)\ntRNAs :: 99\nncRNAs :: 3\nPseudo Genes (total) :: 19\nCDSs (without protein) :: 19\nPseudo Genes (ambiguous residues) :: 0 of 19\nPseudo Genes (frameshifted) :: 1 of 19\nPseudo Genes (incomplete) :: 15 of 19\nPseudo Genes (internal stop) :: 3 of 19\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Flammeovirga kamogawensis
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF016214.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF033580.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015022922.1
COORDINATES: similar to AA sequence:RefSeq:WP_016195603.1
HipA N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010608662.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF013235.2
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:NF014273.2
ParB/Srx family N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF013122.2
GO:0004527 - exonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016274.2
COORDINATES: similar to AA sequence:RefSeq:WP_003778092.1
COORDINATES: similar to AA sequence:RefSeq:WP_000796364.1
COORDINATES: similar to AA sequence:RefSeq:WP_016778482.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF018649.2
isoprenylcysteine carboxylmethyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007395634.1
cation diffusion facilitator family transporter
COORDINATES: protein motif:HMM:NF024096.2
PD-(D/E)XK nuclease-like domain-containing protein
COORDINATES: protein motif:HMM:NF022151.2
COORDINATES: protein motif:HMM:NF014505.2
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: protein motif:HMM:NF025652.2
COORDINATES: protein motif:HMM:NF024242.2
COORDINATES: similar to AA sequence:RefSeq:WP_015728261.1
COORDINATES: protein motif:HMM:NF018627.2
COORDINATES: similar to AA sequence:RefSeq:WP_017085698.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF015347.2
BspA family leucine-rich repeat surface protein
COORDINATES: similar to AA sequence:RefSeq:WP_007811005.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF020795.2