Budorcas taxicolor isolate Tak-1 chromosome Y, Takin1.1, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Budorcas.
REFSEQ INFORMATION: The reference sequence is identical to\nCM041255.1.\nAssembly name: Takin1.1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Northwest A&F University on\n2022/04/22. The original whole-genome shotgun project has the\naccession JAKGDW000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Northwest A&F University\nAssembly Date :: 20-OCT-2021\nAssembly Method :: hifiasm v. 0.13\nAssembly Name :: Takin1.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 24.0x\nSequencing Technology :: PacBio Sequel; Illumina NovaSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Updated annotation\nAnnotation Name :: GCF_023091745.1-RS_2023_02\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 02/25/2023\n##Genome-Annotation-Data-END##
F-box-like/WD repeat-containing protein TBL1X; Derived by automated computational analysis using gene prediction method: Gnomon.
F-box-like/WD repeat-containing protein TBL1X, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 Proteins
F-box-like/WD repeat-containing protein TBL1X, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 30 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon.
F-box-like/WD repeat-containing protein TBL1X
G-protein coupled receptor 143-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
eukaryotic translation initiation factor 1A-like; Derived by automated computational analysis using gene prediction method: Gnomon.
eukaryotic translation initiation factor 1A-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
amelogenin, Y isoform; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
centriole and centriolar satellite protein OFD1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
centriole and centriolar satellite protein OFD1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
U6 spliceosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF00026
Derived by automated computational analysis using gene prediction method: cmsearch.
probable ubiquitin carboxyl-terminal hydrolase FAF-X; Derived by automated computational analysis using gene prediction method: Gnomon.
probable ubiquitin carboxyl-terminal hydrolase FAF-X
actin-related protein 2/3 complex subunit 1A-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
lysine-specific demethylase 6A-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
60S ribosomal protein L30-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins
ATP-dependent RNA helicase DDX3X-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins
protein Shroom2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
testis-specific Y-encoded protein 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
testis-specific Y-encoded protein 3-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: testis-specific Y-encoded protein 3-like
zinc finger Y-chromosomal protein; Derived by automated computational analysis using gene prediction method: Gnomon.
eukaryotic translation initiation factor 2 subunit 3, Y-linked-like; Derived by automated computational analysis using gene prediction method: Gnomon.
eukaryotic translation initiation factor 2 subunit 3, Y-linked-like, transcript variant X2
eukaryotic translation initiation factor 2 subunit 3, Y-linked-like, transcript variant X1
eukaryotic translation initiation factor 2 subunit 3, X-linked-like isoform X2
eukaryotic translation initiation factor 2 subunit 3, Y-linked-like isoform X1
testis-specific Y-encoded protein 4-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 280B-like; Derived by automated computational analysis using gene prediction method: Gnomon.
testis-specific Y-encoded protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
heat shock transcription factor, Y-linked-like; Derived by automated computational analysis using gene prediction method: Gnomon.
heat shock transcription factor, Y-linked-like
etoposide-induced protein 2.4 homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
melanoma antigen preferentially expressed in tumors-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 280A-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
eukaryotic translation initiation factor 1A, Y-chromosomal-like; Derived by automated computational analysis using gene prediction method: Gnomon.
ubiquitin-like modifier-activating enzyme 1; Derived by automated computational analysis using gene prediction method: Gnomon.
melanoma antigen preferentially expressed in tumors-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
40S ribosomal protein SA-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 32 Proteins
serine protease 52-like; Derived by automated computational analysis using gene prediction method: Gnomon.
BCL-6 corepressor-like; Derived by automated computational analysis using gene prediction method: Gnomon.
sex determining region Y; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: sex-determining region Y protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: zinc finger protein 280B-like
uncharacterized LOC128070949; Derived by automated computational analysis using gene prediction method: Gnomon.