Bacteroides xylanisolvens strain CL11T00C03 plasmid pBxylCL11T00C03-2, complete sequence.
Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.
Mobile Type VI secretion system loci of the gut Bacteroidales display extensive intra-ecosystem transfer, multi-species spread and geographical clustering
Submitted (25-JAN-2021) Department of Medicine/Division of Infectious Diseases, Brigham & Women's Hospital, 181 Longwood Avenue, Boston, MA 02115, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP072218.1.\nSequencing by the Institute for Genome Sciences, Genomics Resource\nCenter, School of Medicine, University of Maryland, 801 W.\nBaltimore Street, Baltimore, MD 21201, USA. Gene calling method:\nProdigal version 2.6.3. Annotated using a custom modification of\nProkka version 1.14.6.\nBacteria available from Dr. Laurie Comstock, Brigham & Women's\nHospital, 181 Longwood Avenue, Boston, MA 02115 USA.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 20-OCT-2020\nAssembly Method :: FALCON-Unzip v. 1.2.0\nAssembly Name :: BxylCL11T00C03_pbv2\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 287x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/20/2023 04:04:28\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,388\nCDSs (total) :: 5,299\nGenes (coding) :: 5,193\nCDSs (with protein) :: 5,193\nGenes (RNA) :: 89\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 72\nncRNAs :: 2\nPseudo Genes (total) :: 106\nCDSs (without protein) :: 106\nPseudo Genes (ambiguous residues) :: 0 of 106\nPseudo Genes (frameshifted) :: 24 of 106\nPseudo Genes (incomplete) :: 72 of 106\nPseudo Genes (internal stop) :: 22 of 106\nPseudo Genes (multiple problems) :: 10 of 106\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_008657007.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005683050.1
COORDINATES: similar to AA sequence:RefSeq:WP_004295511.1
COORDINATES: similar to AA sequence:RefSeq:WP_007560590.1
COORDINATES: protein motif:HMM:NF041418.1
COORDINATES: similar to AA sequence:RefSeq:WP_007209655.1
COORDINATES: similar to AA sequence:RefSeq:WP_004327436.1
GO:0004519 - endonuclease activity [Evidence IEA]
GO:0006401 - RNA catabolic process [Evidence IEA]
type II toxin-antitoxin system YoeB family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004295507.1