Bacteroides xylanisolvens strain CL11T00C03 plasmid pBxylCL11T00C03-1, complete sequence.
Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.
Mobile Type VI secretion system loci of the gut Bacteroidales display extensive intra-ecosystem transfer, multi-species spread and geographical clustering
Submitted (25-JAN-2021) Department of Medicine/Division of Infectious Diseases, Brigham & Women's Hospital, 181 Longwood Avenue, Boston, MA 02115, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP072217.1.\nSequencing by the Institute for Genome Sciences, Genomics Resource\nCenter, School of Medicine, University of Maryland, 801 W.\nBaltimore Street, Baltimore, MD 21201, USA. Gene calling method:\nProdigal version 2.6.3. Annotated using a custom modification of\nProkka version 1.14.6.\nBacteria available from Dr. Laurie Comstock, Brigham & Women's\nHospital, 181 Longwood Avenue, Boston, MA 02115 USA.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 20-OCT-2020\nAssembly Method :: FALCON-Unzip v. 1.2.0\nAssembly Name :: BxylCL11T00C03_pbv2\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 287x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/20/2023 04:04:28\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,388\nCDSs (total) :: 5,299\nGenes (coding) :: 5,193\nCDSs (with protein) :: 5,193\nGenes (RNA) :: 89\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 72\nncRNAs :: 2\nPseudo Genes (total) :: 106\nCDSs (without protein) :: 106\nPseudo Genes (ambiguous residues) :: 0 of 106\nPseudo Genes (frameshifted) :: 24 of 106\nPseudo Genes (incomplete) :: 72 of 106\nPseudo Genes (internal stop) :: 22 of 106\nPseudo Genes (multiple problems) :: 10 of 106\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_005648610.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007756669.1
COORDINATES: similar to AA sequence:RefSeq:WP_007851311.1
COORDINATES: similar to AA sequence:RefSeq:WP_007756673.1
COORDINATES: similar to AA sequence:RefSeq:WP_005648574.1
COORDINATES: similar to AA sequence:RefSeq:WP_005648576.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008778074.1
COORDINATES: similar to AA sequence:RefSeq:WP_005648588.1
COORDINATES: similar to AA sequence:RefSeq:WP_009276889.1
COORDINATES: similar to AA sequence:RefSeq:WP_007659510.1
COORDINATES: similar to AA sequence:RefSeq:WP_005648596.1
COORDINATES: similar to AA sequence:RefSeq:WP_005868799.1
COORDINATES: similar to AA sequence:RefSeq:WP_008777460.1
COORDINATES: similar to AA sequence:RefSeq:WP_005648607.1
COORDINATES: similar to AA sequence:RefSeq:WP_007659518.1
COORDINATES: similar to AA sequence:RefSeq:WP_007851284.1
COORDINATES: similar to AA sequence:RefSeq:WP_009276883.1
COORDINATES: similar to AA sequence:RefSeq:WP_008777463.1
LuxR C-terminal-related transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014776477.1
COORDINATES: similar to AA sequence:RefSeq:WP_007756692.1
COORDINATES: similar to AA sequence:RefSeq:WP_007659494.1
COORDINATES: similar to AA sequence:RefSeq:WP_005842174.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007756700.1
COORDINATES: similar to AA sequence:RefSeq:WP_005842179.1
COORDINATES: similar to AA sequence:RefSeq:WP_007659499.1
COORDINATES: similar to AA sequence:RefSeq:WP_005842183.1
COORDINATES: similar to AA sequence:RefSeq:WP_005842185.1
COORDINATES: similar to AA sequence:RefSeq:WP_007659504.1
COORDINATES: similar to AA sequence:RefSeq:WP_005842190.1
COORDINATES: similar to AA sequence:RefSeq:WP_005842192.1
COORDINATES: similar to AA sequence:RefSeq:WP_005842194.1
COORDINATES: similar to AA sequence:RefSeq:WP_005842196.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005842198.1
COORDINATES: similar to AA sequence:RefSeq:WP_008778069.1