Brassica napus mitochondrial linear plasmid, complete sequence.
type: Entry
definition: Brassica napus mitochondrial linear plasmid, complete sequence.
sequence version: NC_004946.1
sequence date: 2023-04-03
sequence: sequence
division: PLN
label: NC_004946.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Brassica napus (rape)
organism: Brassica napus
taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
reference: 1
references: 12207227
reference: 2
reference: 3
comment: PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence was derived from AB073400.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 11640
topology: linear
so has quality: SO_0000987
location: 1..11640
location: region:1-11640:1
RO_0002162: 3708

NC_004946
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: Structural features and expression analysis of a linear mitochondrial plasmid in rapeseed (Brassica napus L.)
author: Handa, H.
author: Itani, K.
author: Sato, H.
journal: Mol. Genet. Genomics
volume: 267
issue: 6
pages: 797-805
year: 2002
pubmed: 12207227

12207227
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (05-MAY-2009) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Handa, H.
journal: Submitted (23-OCT-2001) National Agricultural Research Center for Hokkaido Region, Laboratory of Plant Genecology; 1, Hitsuji-ga-oka, Toyohira-ku, Sapporo 062-8555, Japan

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11640:1
position: 11640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-11640:1:source
so part of: sequence
organism: Brassica napus
organelle: mitochondrion
mol type: genomic DNA
cultivar: Isuzu-natane
plasmid: linear plasmid

3708
type: Taxonomy
SIO_000068: taxonomy

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3708
note: terminal inverted repeat
rpt type: inverted
so part of: sequence
location: 1..327
location: region:1-327:1
so has part: feature:1-327:1:region

position:327:1
position: 327
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-327:1:region

BrnaMpl_p1
type: Gene
subclass of: SO_0000704
RO_0002162: 3708
gene: orf5
locus tag: BrnaMpl_p1
so part of: sequence
location: 230..3202
location: region:230-3202:1
so has part: feature:230-3202:1:exon
subclass of: SO_0000010

1466281
type: Gene
SIO_000068: ncbigene

position:230:1
position: 230
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3202:1
position: 3202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:230-3202:1:exon

BrnaMpl_p1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3708
gene: orf5
locus tag: BrnaMpl_p1
codon start: 1
product: hypothetical protein
translation: MFKYLATIRVIHNCFQKMNQTTSMLYRCYSNESEFDDSELFSNNIIHFIESCKIIDDDVNSSKKSYSEIFAENNILFFLEFISNLSNYINRLNYYYNTNMKCVNPYDGLIEAYISFNHKYPKYSDIEILSLAVMKLLLKYVYNQNIDGGKFTVGYTMSGINIDRISYILDKSIDLRNTNGEMKPSYGLYMKLIQLMLINAEKYQSSNIYDIRIRVYYQSKNKEQSHINISGLEEKEVNDLLFNIFQSEDFLSIKSSPPIVQSFKKKREIPKYITKVLNKTVKMKAFIVADIETIMYENDKGIHYHVPYAAGFLLIQPDVDVGSIPIHKFESYYSEDLYHDTFLERSDTMMVRFIERISNVSKNQNIKSIYFHNMSKFDGIILMKYYIIFYQDKYNIKALMRNNCLYQLSIYNKGNNLLLYKYMDSLKVLPGTLNNLGKAICPELGSKGSVNHESVKEDNLKFRKSELIDYMIQDIRLLGGIMCKIQANYFRQFDIGITEVLTISSLALLIYRMKYYDMDVFPIYIPSRNEDNFIRRGYYGGHSDVYIKKGENLNYYDVNSLYPYVMKEYPMPGGQPTWHSDFNGKDLNELFGFIEAYVECPTHIHKPFLPYKEHDILRFPTGIWVGVYFSEELKLAKSLGYTIIPIKGYLYEKNDKMVSPFKIFVESLFEKRIEAKKNGDEAMSYVYKTIMNSLYGRFGINPKSLITEICDKKRYDSLVKNIDIEYGMHLEDSYYLVRYYINTELSDDSKWNPPRNSAVQLSAAITAYARIYMYKYISRSDCYYTDTDSVVLQDSLPDEMISSSELGKFKLEHYEIEGIFLAPKSYILKKKGDPNYPIKKHKGVGKDYIDEKWYDDHSSNDNLIDFVDVSTNFKIDHFNFVIMKNKNQYRLNPNIRNKRMPILFLTEEGNQNWLYTKPIHIDKSNELYVRDQKNELEKLELEKENNKLTLKVEKMDELEKEIQFLNLNVEKLTNELLQNQDNINDTSKEE
SIO_010081: BrnaMpl_p1
subclass of: SO_0000673
so part of: BrnaMpl_p1
location: 230..3202
location: region:230-3202:1
so has part: feature:230-3202:1:exon

NP_862323.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:230-3202:1:exon

BrnaMpl_p2
type: Gene
subclass of: SO_0000704
RO_0002162: 3708
gene: orf2
locus tag: BrnaMpl_p2
so part of: sequence
location: complement(3535..4611)
location: region:3535-4611:-1
so has part: feature:3535-4611:-1:exon
subclass of: SO_0000010

1466278
type: Gene
SIO_000068: ncbigene

position:3535:-1
position: 3535
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4611:-1
position: 4611
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3535-4611:-1:exon

BrnaMpl_p2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3708
gene: orf2
locus tag: BrnaMpl_p2
codon start: 1
product: hypothetical protein
translation: MKNLNNILLLIRSYWKDHLPSKVLDDENQYLSKTEDEIFHLRLCNLIHVVHTRLNEDYDCYKLTSGEIYEILDLVYNKKYVIDNMKLVEKMSEEGKNDFCELEGEVYRLPSINNQIIRRFPVDLIVQSLPNVSYFSKDLVSPDIRYIDKGTNFIKSSFSDTVVITAFILVFIKSITEELTFFRKSCYLKYQTDDEFISFNETLDKWGGLNNFIVISLHKTIYSYSKSRVLEKVAPLVNSDHYLMSILNSLIYNQILDEEGKDYSYPIGSPLIPILDNVLSNIFLDDLDQKIEDQFPHIQYARYQHIMVLSKPTTDKEVFDNTLNQIFLDIQISPYYISNIDINQILPYFMEEQNCVSK
SIO_010081: BrnaMpl_p2
subclass of: SO_0000673
so part of: BrnaMpl_p2
location: complement(3535..4611)
location: region:3535-4611:-1
so has part: feature:3535-4611:-1:exon

NP_862324.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3535-4611:-1:exon

BrnaMpl_p3
type: Gene
subclass of: SO_0000704
RO_0002162: 3708
gene: orf3
locus tag: BrnaMpl_p3
so part of: sequence
location: complement(5040..5993)
location: region:5040-5993:-1
so has part: feature:5040-5993:-1:exon
subclass of: SO_0000010

1466279
type: Gene
SIO_000068: ncbigene

position:5040:-1
position: 5040
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5993:-1
position: 5993
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5040-5993:-1:exon

BrnaMpl_p3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3708
gene: orf3
locus tag: BrnaMpl_p3
codon start: 1
product: hypothetical protein
translation: MIFSNRMYDSTLFHKRMMCVSQKRTMMSFVNQCKYSLYKNMYHKIIYFSFLKKPLSVEIQSPDVLLENRIYSPYFMKISERIHNKSVYMINQYWRNRLNYITSFYKSYIDELVKSTFHKYNQPLDLTGLHPDVQIIQRLRHAYLILRFKQSMMKSGFTYKNMKELLDYRTTLFSILVTIITLLMEISPEALLIKPDAFFCEKLPEVLNYVREGYVHNVWTTPSEPINCVGKDILPQTTSFDPLHLSKKLIQPIEENEIEEIEIEESIEELLIPQTPGMVRRKTIAYMFATMMIVITILDQSGYSHIIELEKAFYSIG
SIO_010081: BrnaMpl_p3
subclass of: SO_0000673
so part of: BrnaMpl_p3
location: complement(5040..5993)
location: region:5040-5993:-1
so has part: feature:5040-5993:-1:exon

NP_862325.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5040-5993:-1:exon

BrnaMpl_p4
type: Gene
subclass of: SO_0000704
RO_0002162: 3708
gene: orf4
locus tag: BrnaMpl_p4
so part of: sequence
location: complement(6374..7462)
location: region:6374-7462:-1
so has part: feature:6374-7462:-1:exon
subclass of: SO_0000010

1466280
type: Gene
SIO_000068: ncbigene

position:6374:-1
position: 6374
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7462:-1
position: 7462
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6374-7462:-1:exon

BrnaMpl_p4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3708
gene: orf4
locus tag: BrnaMpl_p4
codon start: 1
product: hypothetical protein
translation: MNMILSFRMYDSTLSQKCYPKLLFSNYNFSGKIICSGVQVRTVSPSSLFKMRKLYSLMMTTRESNNRNQSMKTISESNSRNQSMLKEHGEVCIKPNQSSSFRSSSISSEKYGSVADATPLLRSGLTNTSAIGGVVSSSGRKEALGKIVQDSSNVIDLSIGERLLLNDESRMRMKFSSFSTSGLKSLDPSMSMTLNILHRKGIKVPQILSDVVLSNPIFLSDISLFVLIFIGIMFNDHIYLIHMSSNPLALFCKVYPAFTDNLRDIYVNNLCRIDKKPIPCECGDIFNNIVKEQVPENIYDPLDLNELSPPKKVKNLICALGGIILLMFFLEKTGGTEILKDATFFQWYQGFQVNHMTLYKSK
SIO_010081: BrnaMpl_p4
subclass of: SO_0000673
so part of: BrnaMpl_p4
location: complement(6374..7462)
location: region:6374-7462:-1
so has part: feature:6374-7462:-1:exon

NP_862326.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6374-7462:-1:exon

BrnaMpl_p5
type: Gene
subclass of: SO_0000704
RO_0002162: 3708
gene: orf1
locus tag: BrnaMpl_p5
so part of: sequence
location: 6765..7175
location: region:6765-7175:1
so has part: feature:6765-7175:1:exon
subclass of: SO_0000010

1466277
type: Gene
SIO_000068: ncbigene

position:6765:1
position: 6765
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7175:1
position: 7175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6765-7175:1:exon

BrnaMpl_p5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3708
gene: orf1
locus tag: BrnaMpl_p5
codon start: 1
product: hypothetical protein
translation: MIPINIKTNKEMSDRKIGFDNTTSERIWGTFMPFLCKIFNVIDIEGSKLFNPDVENDENFILILLSSFNNNLSPIDKSITLLLSCTIFPKASFLPLDETTPPIALVLVKPLLRSGVASATDPYFSLEIDELLKEDD
SIO_010081: BrnaMpl_p5
subclass of: SO_0000673
so part of: BrnaMpl_p5
location: 6765..7175
location: region:6765-7175:1
so has part: feature:6765-7175:1:exon

NP_862327.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6765-7175:1:exon

BrnaMpl_p6
type: Gene
subclass of: SO_0000704
RO_0002162: 3708
gene: orf6
locus tag: BrnaMpl_p6
so part of: sequence
location: complement(8175..11411)
location: region:8175-11411:-1
so has part: feature:8175-11411:-1:exon
subclass of: SO_0000010

1466282
type: Gene
SIO_000068: ncbigene

position:8175:-1
position: 8175
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11411:-1
position: 11411
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8175-11411:-1:exon

BrnaMpl_p6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3708
gene: orf6
locus tag: BrnaMpl_p6
codon start: 1
product: hypothetical protein
translation: MFKYLATIRVIHNCFQKMNQTTSMLYRCYSNESSDENSDSDNIVYNKKILIEKYDETKNVLLKKFWKDCESTIKERGLNNTTLQVSEYNQSVFKLLRDNKFILNEENPNRDEDLQKLELEIENLTVKFDKETIFKSSFTLIELLLKDKRCCVRDYLKDHLPDKCLSAIYKLNEYTIECGIIHVLGSLFDHLNDINHIRLSTLIDHLEMHIVTQLVLLYRSFNPNLTYYELKYLKLDDYVIYDLVEDKKVKGKPNATIKIRNYILGKKLVEFMTERGIITILNKGNENVNYKTEGYKDNLLYVECAFDINLLPIKLNLPMISPPVDWYSIKKDNNPNVPTYMSDIKGGYLVGATGEFYNRFKLLTSKNIDRFYLSFRKDPSNMLEILSFLQRQKFLINKSMLKFIKDNRLALENVDLLIDQCLANINTLAAYELLDEMFYRTDLKTNIKGYFRLDELKENLNKRIQRARYEEFIFQLADAYADYPLYLPAFLDFRGRIYRSGVLHFHERDLAKSLIIFSNSEKDINEINNFSENRIDSGIYNLAIATGFKYQKFSNYKESYDWIKNELIPNQSNILEFARNADDPFQFLSKALYLLYFISENEKGTSFYSSDLRYLLNEIPVSQDASASAYQIMSFLLLNEDLGKGTNMIYGSEDKIQDLYSSLKDELVEYLLKTKCSNDYPQCEDFVKTQIDRKFVKRLFMPLIYGKTIMSMTNDIKLYSERKLPYKAYFKIANDCLEFWRMKFPDIVNLMKLLNLVGWFKSQMNKPVLYGHMLFTTHQFYTKSVKTQISIYDRKTKKRHRVTLKLPTPERDIRKSQVSTCVNFIHQRDACIAMLVVDKLNRYHEHASMYTVHDNFITSPYYSNIIDISNQNYQFKIPSLYLEAFKYIEKPSNIVMTFLMNNLIYFESESYNMIYTCHISFNTLYNLVIKKYKGNPSEIREEIKYFHDDVSSIFRKNKKVFDDNLSDNIIITDELSLIAKNKFYDMYQNILGNFLPDLPGKGVNYIFDREDFRYFLKLNRDSFCHTKVDKKTWDIKTNIFLTCFDQYYTNITDTKYESYPEGLKHQIESYNPNYSLHY
SIO_010081: BrnaMpl_p6
subclass of: SO_0000673
so part of: BrnaMpl_p6
location: complement(8175..11411)
location: region:8175-11411:-1
so has part: feature:8175-11411:-1:exon

NP_862328.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8175-11411:-1:exon

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3708
note: terminal inverted repeat
rpt type: inverted
so part of: sequence
location: 11314..11640
location: region:11314-11640:1
so has part: feature:11314-11640:1:region

position:11314:1
position: 11314
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11314-11640:1:region