Mycolicibacterium pallens strain JCM 16370 plasmid unnamed2, complete sequence.
Mycolicibacterium pallens (Mycobacterium pallens)
Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycolicibacterium.
Complete Genome Sequences of 14 Nontuberculous Mycobacteria Type Strains
Microbiol Resour Announc 12 (2), e0121422 (2023)
Submitted (27-JUL-2021) Department of Mycobacterium reference and research, Research Institute of Tuberculosis, 3-1-24 matsuyama, kiyose, tokyo 204-8533, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nCP080335.1.\nBacteria and source DNA available from Japan Collection of\nMicroorganisms (JCM).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Flye v. 2.8.3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 99.0x; 60.4\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 06/25/2023 10:37:53\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,982\nCDSs (total) :: 5,926\nGenes (coding) :: 5,795\nCDSs (with protein) :: 5,795\nGenes (RNA) :: 56\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 3\nPseudo Genes (total) :: 131\nCDSs (without protein) :: 131\nPseudo Genes (ambiguous residues) :: 0 of 131\nPseudo Genes (frameshifted) :: 63 of 131\nPseudo Genes (incomplete) :: 66 of 131\nPseudo Genes (internal stop) :: 17 of 131\nPseudo Genes (multiple problems) :: 13 of 131\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
GO:0008490 - arsenite secondary active transmembrane transporter activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011892552.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
low molecular weight phosphatase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008264008.1
COORDINATES: similar to AA sequence:RefSeq:WP_005088170.1
COORDINATES: similar to AA sequence:RefSeq:WP_007172373.1
COORDINATES: similar to AA sequence:RefSeq:WP_012296244.1
COORDINATES: similar to AA sequence:RefSeq:WP_007172489.1
COORDINATES: similar to AA sequence:RefSeq:WP_013882287.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007171712.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_020667328.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005460725.1
COORDINATES: similar to AA sequence:RefSeq:WP_005086299.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
NAD(P)-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014805589.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005112719.1
GO:0003676 - nucleic acid binding [Evidence IEA]
helicase associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011331630.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:NP_215335.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0015415 - ATPase-coupled phosphate ion transmembrane transporter activity [Evidence IEA]
phosphate ABC transporter ATP-binding protein PstB
COORDINATES: similar to AA sequence:RefSeq:WP_019931435.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015415 - ATPase-coupled phosphate ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014981494.1
phosphate ABC transporter permease subunit PstC
COORDINATES: similar to AA sequence:RefSeq:WP_005112724.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0015415 - ATPase-coupled phosphate ion transmembrane transporter activity [Evidence IEA]; GO:0042301 - phosphate ion binding [Evidence IEA]
phosphate ABC transporter substrate-binding protein PstS
COORDINATES: similar to AA sequence:RefSeq:WP_013018663.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005086294.1
GO:0030612 - arsenate reductase (thioredoxin) activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF023257.2
COORDINATES: similar to AA sequence:RefSeq:WP_005112717.1
GO:0006817 - phosphate ion transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005112718.1
COORDINATES: similar to AA sequence:RefSeq:WP_008376397.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007770479.1