Arabidopsis thaliana ecotype Col-0 mitochondrion, complete genome.
type: Entry
definition: Arabidopsis thaliana ecotype Col-0 mitochondrion, complete genome.
sequence version: NC_037304.1
sequence date: 2023-04-03
sequence: sequence
division: PLN
label: NC_037304.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Arabidopsis thaliana (thale cress)
organism: Arabidopsis thaliana
taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
reference: 1
references: 29519893
reference: 2
reference: 3
reference: 4
comment: PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to BK010421.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 367808
topology: circular
so has quality: SO_0000988
location: 1..367808
location: region:1-367808:1
RO_0002162: 3702

NC_037304
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: Correction of Persistent Errors in Arabidopsis Reference Mitochondrial Genomes
author: Sloan, D.B.
author: Wu, Z.
author: Sharbrough, J.
journal: Plant Cell
volume: 30
issue: 3
pages: 525-527
year: 2018
pubmed: 29519893

29519893
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (10-OCT-2018) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Binder, S.
author: Christensen, A.C.
author: Giege, P.
author: Ruwe, H.
author: Schmitz-Linneweber, C.
author: Sloan, D.B.
journal: Submitted (03-OCT-2018) Department of Biology, Colorado State University, Campus Delivery 1878, Fort Collins, CO 80523, USA
comments: Sequence update by submitter

4
title: Direct Submission
author: Sloan, D.B.
author: Wu, Z.
author: Sharbrough, J.
journal: Submitted (04-DEC-2017) Department of Biology, Colorado State University, Campus Delivery 1878, Fort Collins, CO 80523, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:367808:1
position: 367808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-367808:1:source
so part of: sequence
organism: Arabidopsis thaliana
organelle: mitochondrion
mol type: genomic DNA
ecotype: Col-0

3702
type: Taxonomy
SIO_000068: taxonomy

DA397_mgp37
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
gene: nad5
locus tag: DA397_mgp37
trans splicing: true
so part of: sequence
location: join(234352..236628,360107..360128,26817..28336)
location: region:26817-360128:1
so has part: feature:234352-236628:1:exon
so has part: feature:360107-360128:1:exon
so has part: feature:26817-28336:1:exon
subclass of: SO_0000010
subclass of: SO_0000011

36335705
type: Gene
SIO_000068: ncbigene

position:26817:1
position: 26817
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:360128:1
position: 360128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:234352-236628:1:exon

position:234352:1
position: 234352
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:236628:1
position: 236628
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:360107-360128:1:exon

position:360107:1
position: 360107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:26817-28336:1:exon

position:28336:1
position: 28336
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

DA397_mgp37
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3702
gene: nad5
locus tag: DA397_mgp37
exception: RNA editing
codon start: 1
product: NADH dehydrogenase subunit 5
translation: MYLLIVFLPLLGSSVAGFFGRFLGSEGSAIMTTTCVSFSSILSLIAFYEVALGASACYLRIAPWISSEMFDASWGFLFDSLTVVMLIVVTFISSLVHLYSISYMSEDPHSPRFMCYLSIFTFFMLMLVTGDNFLQLFLGWEGVGLASYLLIHFWFTRLQADKAAIKAMLVNRVGDFGLALGILGCFTLFQTVDFSTIFACASVPRNSWIFCNMRLNAISLICILLFIGAVGKSAQIGLHTWLPDAMEGPTPVSALIHAATMVTAGVFMIARCSPLFEYSPTALIVITFAGAMTSFLAATTGILQNDLKRVIAYSTCSQLGYMIFACGISNYSVSVFHLMNHAFFKALLFLSAGSVIHAMSDEQDMRKMGGLASSFPLTYAMMLIGSLSLIGFPFLTGFYSKDVILELAYTKYTISGNFAFWLGSISVLFTSYYSFRLLFLTFLVPTNSFGRDISRCHDAPIPMAIPSILLALGSLFVGYLAKDMMIGLGWNFWANSLLVLPKNEILAESEFAAPTIIKLIPILFSTLGAFVAYNVNLVADQFQRAFQTSTFCNRLYSFFNKRWFFDQVLNDFLVRSFLRFGYEVSFEALDKGAIEILGPYGISYTFRRLAERISQLQSGFVYHYAFAMLLGLTLFVTFFCMWDSLSSWVDNRLSFILIVSSFYTKSSQE
SIO_010081: DA397_mgp37
subclass of: SO_0000673
so part of: DA397_mgp37
location: join(234352..234581,235413..236628,360107..360128,26817..27211,28190..28336)
location: region:26817-360128:1
so has part: feature:234352-234581:1:exon
so has part: feature:235413-236628:1:exon
so has part: feature:360107-360128:1:exon
so has part: feature:26817-27211:1:exon
so has part: feature:28190-28336:1:exon

YP_009472097.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:234352-234581:1:exon

position:234581:1
position: 234581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:235413-236628:1:exon

position:235413:1
position: 235413
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:360107-360128:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:26817-27211:1:exon

position:27211:1
position: 27211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:28190-28336:1:exon

position:28190:1
position: 28190
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: Large2-1
rpt type: direct
so part of: sequence
location: 1..4193
location: region:1-4193:1
so has part: feature:1-4193:1:region

position:4193:1
position: 4193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-4193:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF139A
so part of: sequence
location: complement(363..782)
location: region:363-782:-1
so has part: feature:363-782:-1:region

position:363:-1
position: 363
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:782:-1
position: 782
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:363-782:-1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M112
so part of: sequence
location: complement(1828..1871)
location: region:1828-1871:-1
so has part: feature:1828-1871:-1:region

position:1828:-1
position: 1828
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1871:-1
position: 1871
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1828-1871:-1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M194
so part of: sequence
location: complement(1879..1903)
location: region:1879-1903:-1
so has part: feature:1879-1903:-1:region

position:1879:-1
position: 1879
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1903:-1
position: 1903
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1879-1903:-1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M113
so part of: sequence
location: complement(1930..1950)
location: region:1930-1950:-1
so has part: feature:1930-1950:-1:region

position:1930:-1
position: 1930
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1950:-1
position: 1950
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1930-1950:-1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M114
so part of: sequence
location: complement(1951..1975)
location: region:1951-1975:-1
so has part: feature:1951-1975:-1:region

position:1951:-1
position: 1951
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1975:-1
position: 1975
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1951-1975:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: BB-1
so part of: sequence
location: 1956..2100
location: region:1956-2100:1
so has part: feature:1956-2100:1:region

position:1956:1
position: 1956
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2100:1
position: 2100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1956-2100:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M1
so part of: sequence
location: 3581..3599
location: region:3581-3599:1
so has part: feature:3581-3599:1:region

position:3581:1
position: 3581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3599:1
position: 3599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3581-3599:1:region

5'UTR
type: Five Prime UTR
subclass of: SO_0000204
RO_0002162: 3702
note: cox2
so part of: sequence
location: 6059..6263
location: region:6059-6263:1
so has part: feature:6059-6263:1:region

position:6059:1
position: 6059
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6263:1
position: 6263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6059-6263:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: cox2; alternative 5' transcript end
so part of: sequence
location: 6113
location: region:6113-6113:1
so has part: feature:6113-6113:1:region

position:6113:1
position: 6113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6113-6113:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: D-1
rpt type: inverted
so part of: sequence
location: 6118..6569
location: region:6118-6569:1
so has part: feature:6118-6569:1:region

position:6118:1
position: 6118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6569:1
position: 6569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6118-6569:1:region

DA397_mgp01
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
gene: cox2
locus tag: DA397_mgp01
so part of: sequence
location: 6264..8389
location: region:6264-8389:1
so has part: feature:6264-8389:1:exon
subclass of: SO_0000010

36335641
type: Gene
SIO_000068: ncbigene

position:6264:1
position: 6264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8389:1
position: 8389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6264-8389:1:exon

DA397_mgp01
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3702
gene: cox2
locus tag: DA397_mgp01
exception: RNA editing
codon start: 1
product: cytochrome c oxidase subunit 2
translation: MIVLKWLFFTISPCDAAEPWQLGFQDAATPIMQGIIDLHHDIFFFLILILVFVLWILVRALWHFHYKKNAIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLTFDSYMIPEEDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISILVQREGVYYGQCSEICGTNHAFMPIVVEAVSRKDYGSWVSNQLIPQTGEA
SIO_010081: DA397_mgp01
subclass of: SO_0000673
so part of: DA397_mgp01
location: join(6264..6963,8307..8389)
location: region:6264-8389:1
so has part: feature:6264-6963:1:exon
so has part: feature:8307-8389:1:exon

YP_009472098.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6264-6963:1:exon

position:6963:1
position: 6963
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:8307-8389:1:exon

position:8307:1
position: 8307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

DA397_mgp01
type: Exon
subclass of: SO_0000147
RO_0002162: 3702
gene: cox2
locus tag: DA397_mgp01
number: 1
SIO_010081: DA397_mgp01
subclass of: SO_0000673
so part of: DA397_mgp01
location: 6264..6963
location: region:6264-6963:1
so has part: feature:6264-6963:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6264-6963:1:exon

DA397_mgp01
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: cox2
locus tag: DA397_mgp01
note: cox2; C to U RNA editing; CTC(L) to TTC(F)
SIO_010081: DA397_mgp01
subclass of: SO_0000673
so part of: DA397_mgp01
location: 6288
location: region:6288-6288:1
so has part: feature:6288-6288:1:exon

position:6288:1
position: 6288
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6288-6288:1:exon

DA397_mgp01
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: cox2
locus tag: DA397_mgp01
note: cox2; C to U RNA editing; synonymous
SIO_010081: DA397_mgp01
subclass of: SO_0000673
so part of: DA397_mgp01
location: 6290
location: region:6290-6290:1
so has part: feature:6290-6290:1:exon

position:6290:1
position: 6290
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6290-6290:1:exon

DA397_mgp01
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: cox2
locus tag: DA397_mgp01
note: cox2; C to U RNA editing; TCT(S) to TTT(F)
SIO_010081: DA397_mgp01
subclass of: SO_0000673
so part of: DA397_mgp01
location: 6334
location: region:6334-6334:1
so has part: feature:6334-6334:1:exon

position:6334:1
position: 6334
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6334-6334:1:exon

DA397_mgp01
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: cox2
locus tag: DA397_mgp01
note: cox2; C to U RNA editing (minor frequency); synonymous
SIO_010081: DA397_mgp01
subclass of: SO_0000673
so part of: DA397_mgp01
location: 6398
location: region:6398-6398:1
so has part: feature:6398-6398:1:exon

position:6398:1
position: 6398
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6398-6398:1:exon

DA397_mgp01
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: cox2
locus tag: DA397_mgp01
note: cox2; C to U RNA editing; synonymous
SIO_010081: DA397_mgp01
subclass of: SO_0000673
so part of: DA397_mgp01
location: 6401
location: region:6401-6401:1
so has part: feature:6401-6401:1:exon

position:6401:1
position: 6401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6401-6401:1:exon

DA397_mgp01
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: cox2
locus tag: DA397_mgp01
note: cox2; C to U RNA editing (minor frequency); CTT(L) to TTT(F)
SIO_010081: DA397_mgp01
subclass of: SO_0000673
so part of: DA397_mgp01
location: 6513
location: region:6513-6513:1
so has part: feature:6513-6513:1:exon

position:6513:1
position: 6513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6513-6513:1:exon

DA397_mgp01
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: cox2
locus tag: DA397_mgp01
note: cox2; C to U RNA editing; CGG(R) to TGG(W)
SIO_010081: DA397_mgp01
subclass of: SO_0000673
so part of: DA397_mgp01
location: 6516
location: region:6516-6516:1
so has part: feature:6516-6516:1:exon

position:6516:1
position: 6516
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6516-6516:1:exon

DA397_mgp01
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: cox2
locus tag: DA397_mgp01
note: cox2; C to U RNA editing; TCG(S) to TTG(L)
SIO_010081: DA397_mgp01
subclass of: SO_0000673
so part of: DA397_mgp01
location: 6541
location: region:6541-6541:1
so has part: feature:6541-6541:1:exon

position:6541:1
position: 6541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6541-6541:1:exon

DA397_mgp01
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: cox2
locus tag: DA397_mgp01
note: cox2; C to U RNA editing; CGG(R) to TGG(W)
SIO_010081: DA397_mgp01
subclass of: SO_0000673
so part of: DA397_mgp01
location: 6642
location: region:6642-6642:1
so has part: feature:6642-6642:1:exon

position:6642:1
position: 6642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6642-6642:1:exon

DA397_mgp01
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: cox2
locus tag: DA397_mgp01
note: cox2; C to U RNA editing; TCA(S) to TTA(L)
SIO_010081: DA397_mgp01
subclass of: SO_0000673
so part of: DA397_mgp01
location: 6739
location: region:6739-6739:1
so has part: feature:6739-6739:1:exon

position:6739:1
position: 6739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6739-6739:1:exon

DA397_mgp01
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: cox2
locus tag: DA397_mgp01
note: cox2; C to U RNA editing (minor frequency); synonymous
SIO_010081: DA397_mgp01
subclass of: SO_0000673
so part of: DA397_mgp01
location: 6758
location: region:6758-6758:1
so has part: feature:6758-6758:1:exon

position:6758:1
position: 6758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6758-6758:1:exon

DA397_mgp01
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: cox2
locus tag: DA397_mgp01
note: cox2; C to U RNA editing; CCT(P) to CTT(L)
SIO_010081: DA397_mgp01
subclass of: SO_0000673
so part of: DA397_mgp01
location: 6820
location: region:6820-6820:1
so has part: feature:6820-6820:1:exon

position:6820:1
position: 6820
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6820-6820:1:exon

DA397_mgp01
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: cox2
locus tag: DA397_mgp01
note: cox2; C to U RNA editing; TCA(S) to TTA(L)
SIO_010081: DA397_mgp01
subclass of: SO_0000673
so part of: DA397_mgp01
location: 6844
location: region:6844-6844:1
so has part: feature:6844-6844:1:exon

position:6844:1
position: 6844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6844-6844:1:exon

DA397_mgp01
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: cox2
locus tag: DA397_mgp01
note: cox2; C to U RNA editing; ACG(T) to ATG(M)
SIO_010081: DA397_mgp01
subclass of: SO_0000673
so part of: DA397_mgp01
location: 6961
location: region:6961-6961:1
so has part: feature:6961-6961:1:exon

position:6961:1
position: 6961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6961-6961:1:exon

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M115
so part of: sequence
location: complement(7528..7543)
location: region:7528-7543:-1
so has part: feature:7528-7543:-1:region

position:7528:-1
position: 7528
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7543:-1
position: 7543
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7528-7543:-1:region

DA397_mgp01
type: Exon
subclass of: SO_0000147
RO_0002162: 3702
gene: cox2
locus tag: DA397_mgp01
number: 2
SIO_010081: DA397_mgp01
subclass of: SO_0000673
so part of: DA397_mgp01
location: 8307..8389
location: region:8307-8389:1
so has part: feature:8307-8389:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8307-8389:1:exon

DA397_mgp01
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: cox2
locus tag: DA397_mgp01
note: cox2; C to U RNA editing; CCT(P) to TCT(S)
SIO_010081: DA397_mgp01
subclass of: SO_0000673
so part of: DA397_mgp01
location: 8327
location: region:8327-8327:1
so has part: feature:8327-8327:1:exon

position:8327:1
position: 8327
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8327-8327:1:exon

DA397_mgp01
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: cox2
locus tag: DA397_mgp01
note: cox2; C to U RNA editing; CGG(R) to TGG(W)
SIO_010081: DA397_mgp01
subclass of: SO_0000673
so part of: DA397_mgp01
location: 8348
location: region:8348-8348:1
so has part: feature:8348-8348:1:exon

position:8348:1
position: 8348
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8348-8348:1:exon

3'UTR
type: Three Prime UTR
subclass of: SO_0000205
RO_0002162: 3702
note: cox2
so part of: sequence
location: 8390..8705
location: region:8390-8705:1
so has part: feature:8390-8705:1:region

position:8390:1
position: 8390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8705:1
position: 8705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8390-8705:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: II-1
rpt type: inverted
so part of: sequence
location: 8921..9013
location: region:8921-9013:1
so has part: feature:8921-9013:1:region

position:8921:1
position: 8921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9013:1
position: 9013
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8921-9013:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M2
so part of: sequence
location: 10376..10390
location: region:10376-10390:1
so has part: feature:10376-10390:1:region

position:10376:1
position: 10376
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10390:1
position: 10390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10376-10390:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M116
so part of: sequence
location: complement(10983..11006)
location: region:10983-11006:-1
so has part: feature:10983-11006:-1:region

position:10983:-1
position: 10983
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11006:-1
position: 11006
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10983-11006:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: Z-1
rpt type: direct
so part of: sequence
location: 11394..11535
location: region:11394-11535:1
so has part: feature:11394-11535:1:region

position:11394:1
position: 11394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11535:1
position: 11535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11394-11535:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M3
so part of: sequence
location: 11536..11550
location: region:11536-11550:1
so has part: feature:11536-11550:1:region

position:11536:1
position: 11536
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11550:1
position: 11550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11536-11550:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF116
so part of: sequence
location: complement(12758..13114)
location: region:12758-13114:-1
so has part: feature:12758-13114:-1:region

position:12758:-1
position: 12758
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13114:-1
position: 13114
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12758-13114:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF167
so part of: sequence
location: complement(13793..14296)
location: region:13793-14296:-1
so has part: feature:13793-14296:-1:region

position:13793:-1
position: 13793
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14296:-1
position: 14296
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13793-14296:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF121A
so part of: sequence
location: complement(14340..14705)
location: region:14340-14705:-1
so has part: feature:14340-14705:-1:region

position:14340:-1
position: 14340
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14705:-1
position: 14705
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14340-14705:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF143
so part of: sequence
location: 16424..16855
location: region:16424-16855:1
so has part: feature:16424-16855:1:region

position:16424:1
position: 16424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16855:1
position: 16855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16424-16855:1:region

3'UTR
type: Three Prime UTR
subclass of: SO_0000205
RO_0002162: 3702
note: ccmB
so part of: sequence
location: complement(17734..17813)
location: region:17734-17813:-1
so has part: feature:17734-17813:-1:region

position:17734:-1
position: 17734
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17813:-1
position: 17813
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17734-17813:-1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M195
so part of: sequence
location: complement(17734..17754)
location: region:17734-17754:-1
so has part: feature:17734-17754:-1:region

position:17754:-1
position: 17754
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17734-17754:-1:region

DA397_mgp02
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
alternative label: ccb2
alternative label: ccb206
gene: ccmB
locus tag: DA397_mgp02
gene synonym: ccb2; ccb206
so part of: sequence
location: complement(17814..18434)
location: region:17814-18434:-1
so has part: feature:17814-18434:-1:exon
subclass of: SO_0000010

36335642
type: Gene
SIO_000068: ncbigene

position:17814:-1
position: 17814
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18434:-1
position: 18434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17814-18434:-1:exon

DA397_mgp02
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3702
alternative label: ccb2
alternative label: ccb206
gene: ccmB
locus tag: DA397_mgp02
gene synonym: ccb2; ccb206
exception: RNA editing
codon start: 1
product: cytochrome c biogenesis B
translation: MRRLFLELYYKLIFSSTPITSFSLFLLYIVVTPLMLGFEKDFLCHFHLGLIWISLLFSFLSAPFFRNEKEDGTLELYYLSTYCLPKILLLQLVGHWVIQISCVFCGFPMLQLLYQFGRSGMDWLNILLGSLVLTLLCGIHSCLALGITSSSGWNSLQNLTTLPTLLPLTVFCTSIETEWFHVLLLIGYFFLFVSLFPILVSISLQD
SIO_010081: DA397_mgp02
subclass of: SO_0000673
so part of: DA397_mgp02
location: complement(17814..18434)
location: region:17814-18434:-1
so has part: feature:17814-18434:-1:exon

YP_009472099.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17814-18434:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing; TCG(S) to TTG(L)
so part of: sequence
location: 17839
location: region:17839-17839:1
so has part: feature:17839-17839:1:region

position:17839:1
position: 17839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17839-17839:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 17859
location: region:17859-17859:1
so has part: feature:17859-17859:1:region

position:17859:1
position: 17859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17859-17859:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing; TCT(S) to TTT(F)
so part of: sequence
location: 17866
location: region:17866-17866:1
so has part: feature:17866-17866:1:region

position:17866:1
position: 17866
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17866-17866:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing; TCC(S) to TTC(F)
so part of: sequence
location: 17869
location: region:17869-17869:1
so has part: feature:17869-17869:1:region

position:17869:1
position: 17869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17869-17869:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing; TCG(S) to TTG(L)
so part of: sequence
location: 17881
location: region:17881-17881:1
so has part: feature:17881-17881:1:region

position:17881:1
position: 17881
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17881-17881:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing; TCA(S) to TTA(L)
so part of: sequence
location: 17884
location: region:17884-17884:1
so has part: feature:17884-17884:1:region

position:17884:1
position: 17884
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17884-17884:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing; CGT(R) to TGT(C)
so part of: sequence
location: 17921
location: region:17921-17921:1
so has part: feature:17921-17921:1:region

position:17921:1
position: 17921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17921-17921:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing; TCT(S) to TTT(F)
so part of: sequence
location: 17923
location: region:17923-17923:1
so has part: feature:17923-17923:1:region

position:17923:1
position: 17923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17923-17923:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 17934
location: region:17934-17934:1
so has part: feature:17934-17934:1:region

position:17934:1
position: 17934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17934-17934:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing (minor frequency); CCC(P) to CTC(L)
so part of: sequence
location: 17935
location: region:17935-17935:1
so has part: feature:17935-17935:1:region

position:17935:1
position: 17935
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17935-17935:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing; TCA(S) to TTA(L)
so part of: sequence
location: 17950
location: region:17950-17950:1
so has part: feature:17950-17950:1:region

position:17950:1
position: 17950
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17950-17950:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 17955
location: region:17955-17955:1
so has part: feature:17955-17955:1:region

position:17955:1
position: 17955
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17955-17955:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing; CCA(P) to CTA(L)
so part of: sequence
location: 17959
location: region:17959-17959:1
so has part: feature:17959-17959:1:region

position:17959:1
position: 17959
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17959-17959:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing; CCA(P) to TTA(L)
so part of: sequence
location: 17960
location: region:17960-17960:1
so has part: feature:17960-17960:1:region

position:17960:1
position: 17960
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17960-17960:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing; TCG(S) to TTG(L)
so part of: sequence
location: 17968
location: region:17968-17968:1
so has part: feature:17968-17968:1:region

position:17968:1
position: 17968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17968-17968:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 17994
location: region:17994-17994:1
so has part: feature:17994-17994:1:region

position:17994:1
position: 17994
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17994-17994:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing; TCG(S) to TTG(L)
so part of: sequence
location: 18007
location: region:18007-18007:1
so has part: feature:18007-18007:1:region

position:18007:1
position: 18007
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18007-18007:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing; CGT(R) to TGT(C)
so part of: sequence
location: 18011
location: region:18011-18011:1
so has part: feature:18011-18011:1:region

position:18011:1
position: 18011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18011-18011:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 18029
location: region:18029-18029:1
so has part: feature:18029-18029:1:region

position:18029:1
position: 18029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18029-18029:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing; CCA(P) to CTA(L)
so part of: sequence
location: 18055
location: region:18055-18055:1
so has part: feature:18055-18055:1:region

position:18055:1
position: 18055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18055-18055:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing; CCA(P) to TTA(L)
so part of: sequence
location: 18056
location: region:18056-18056:1
so has part: feature:18056-18056:1:region

position:18056:1
position: 18056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18056-18056:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing; CGG(R) to TGG(W)
so part of: sequence
location: 18068
location: region:18068-18068:1
so has part: feature:18068-18068:1:region

position:18068:1
position: 18068
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18068-18068:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing; TCG(S) to TTG(L)
so part of: sequence
location: 18097
location: region:18097-18097:1
so has part: feature:18097-18097:1:region

position:18097:1
position: 18097
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18097-18097:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 18111
location: region:18111-18111:1
so has part: feature:18111-18111:1:region

position:18111:1
position: 18111
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18111-18111:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing; CGT(R) to TGT(C)
so part of: sequence
location: 18131
location: region:18131-18131:1
so has part: feature:18131-18131:1:region

position:18131:1
position: 18131
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18131-18131:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing; CGG(R) to TGG(W)
so part of: sequence
location: 18149
location: region:18149-18149:1
so has part: feature:18149-18149:1:region

position:18149:1
position: 18149
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18149-18149:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing (minor frequency); CGA(R) to TGA(*)
so part of: sequence
location: 18239
location: region:18239-18239:1
so has part: feature:18239-18239:1:region

position:18239:1
position: 18239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18239-18239:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing; CCT(P) to TTT(F)
so part of: sequence
location: 18241
location: region:18241-18241:1
so has part: feature:18241-18241:1:region

position:18241:1
position: 18241
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18241-18241:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing; CCT(P) to TTT(F)
so part of: sequence
location: 18242
location: region:18242-18242:1
so has part: feature:18242-18242:1:region

position:18242:1
position: 18242
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18242-18242:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing; CCT(P) to TCT(S)
so part of: sequence
location: 18254
location: region:18254-18254:1
so has part: feature:18254-18254:1:region

position:18254:1
position: 18254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18254-18254:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing; CCT(P) to CTT(L)
so part of: sequence
location: 18256
location: region:18256-18256:1
so has part: feature:18256-18256:1:region

position:18256:1
position: 18256
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18256-18256:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing; CCT(P) to TCT(S)
so part of: sequence
location: 18263
location: region:18263-18263:1
so has part: feature:18263-18263:1:region

position:18263:1
position: 18263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18263-18263:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing; CCG(P) to CTG(L)
so part of: sequence
location: 18271
location: region:18271-18271:1
so has part: feature:18271-18271:1:region

position:18271:1
position: 18271
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18271-18271:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing; CCT(P) to TCT(S)
so part of: sequence
location: 18275
location: region:18275-18275:1
so has part: feature:18275-18275:1:region

position:18275:1
position: 18275
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18275-18275:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing; synonymous
so part of: sequence
location: 18276
location: region:18276-18276:1
so has part: feature:18276-18276:1:region

position:18276:1
position: 18276
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18276-18276:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing; CGG(R) to TGG(W)
so part of: sequence
location: 18281
location: region:18281-18281:1
so has part: feature:18281-18281:1:region

position:18281:1
position: 18281
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18281-18281:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing; CCG(P) to CTG(L)
so part of: sequence
location: 18286
location: region:18286-18286:1
so has part: feature:18286-18286:1:region

position:18286:1
position: 18286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18286-18286:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing; CCG(P) to TTG(L)
so part of: sequence
location: 18287
location: region:18287-18287:1
so has part: feature:18287-18287:1:region

position:18287:1
position: 18287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18287-18287:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 18297
location: region:18297-18297:1
so has part: feature:18297-18297:1:region

position:18297:1
position: 18297
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18297-18297:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing; TCC(S) to TTC(F)
so part of: sequence
location: 18298
location: region:18298-18298:1
so has part: feature:18298-18298:1:region

position:18298:1
position: 18298
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18298-18298:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing; TCA(S) to TTA(L)
so part of: sequence
location: 18307
location: region:18307-18307:1
so has part: feature:18307-18307:1:region

position:18307:1
position: 18307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18307-18307:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 18345
location: region:18345-18345:1
so has part: feature:18345-18345:1:region

position:18345:1
position: 18345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18345-18345:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 18348
location: region:18348-18348:1
so has part: feature:18348-18348:1:region

position:18348:1
position: 18348
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18348-18348:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing; TCG(S) to TTG(L)
so part of: sequence
location: 18355
location: region:18355-18355:1
so has part: feature:18355-18355:1:region

position:18355:1
position: 18355
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18355-18355:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 18357
location: region:18357-18357:1
so has part: feature:18357-18357:1:region

position:18357:1
position: 18357
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18357-18357:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 18360
location: region:18360-18360:1
so has part: feature:18360-18360:1:region

position:18360:1
position: 18360
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18360-18360:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing; TCA(S) to TTA(L)
so part of: sequence
location: 18364
location: region:18364-18364:1
so has part: feature:18364-18364:1:region

position:18364:1
position: 18364
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18364-18364:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 18387
location: region:18387-18387:1
so has part: feature:18387-18387:1:region

position:18387:1
position: 18387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18387-18387:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 18390
location: region:18390-18390:1
so has part: feature:18390-18390:1:region

position:18390:1
position: 18390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18390-18390:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing (minor frequency); TCC(S) to TTC(F)
so part of: sequence
location: 18391
location: region:18391-18391:1
so has part: feature:18391-18391:1:region

position:18391:1
position: 18391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18391-18391:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; C to U RNA editing; CAT(H) to TAT(Y)
so part of: sequence
location: 18407
location: region:18407-18407:1
so has part: feature:18407-18407:1:region

position:18407:1
position: 18407
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18407-18407:1:region

5'UTR
type: Five Prime UTR
subclass of: SO_0000204
RO_0002162: 3702
note: ccmB
so part of: sequence
location: complement(18435..18781)
location: region:18435-18781:-1
so has part: feature:18435-18781:-1:region

position:18435:-1
position: 18435
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18781:-1
position: 18781
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18435-18781:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmB; alternative 5' transcript end
so part of: sequence
location: 18574
location: region:18574-18574:1
so has part: feature:18574-18574:1:region

position:18574:1
position: 18574
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18574-18574:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: A-1
rpt type: direct
so part of: sequence
location: 19682..20237
location: region:19682-20237:1
so has part: feature:19682-20237:1:region

position:19682:1
position: 19682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20237:1
position: 20237
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19682-20237:1:region

DA397_mgt01
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
gene: trnK(TTT)
locus tag: DA397_mgt01
note: anticodon:TTT; copy 1
so part of: sequence
location: 19928..20000
location: region:19928-20000:1
so has part: feature:19928-20000:1:exon
subclass of: SO_0000663

36335643
type: Gene
SIO_000068: ncbigene

position:19928:1
position: 19928
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20000:1
position: 20000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19928-20000:1:exon

DA397_mgt01
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3702
gene: trnK(TTT)
locus tag: DA397_mgt01
product: tRNA-Lys
SIO_010081: DA397_mgt01
subclass of: SO_0000673
so part of: DA397_mgt01
location: 19928..20000
location: region:19928-20000:1
so has part: feature:19928-20000:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:19928-20000:1:exon

DA397_mgp41
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
gene: rps19
locus tag: DA397_mgp41
note: copy 1
pseudo: true
so part of: sequence
location: 20041..20134
location: region:20041-20134:1
so has part: feature:20041-20134:1:exon

36335677
type: Gene
SIO_000068: ncbigene

position:20041:1
position: 20041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20134:1
position: 20134
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20041-20134:1:exon

DA397_mgp40
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
gene: rps3
locus tag: DA397_mgp40
so part of: sequence
location: 20165..23418
location: region:20165-23418:1
so has part: feature:20165-23418:1:exon
subclass of: SO_0000010
subclass of: SO_0000011

36335644
type: Gene
SIO_000068: ncbigene

position:20165:1
position: 20165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23418:1
position: 23418
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20165-23418:1:exon

DA397_mgp40
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3702
gene: rps3
locus tag: DA397_mgp40
exception: RNA editing
codon start: 1
product: ribosomal protein S3
translation: MARKGNPISVRLGKNRSSDSSWFSDYYYGKFVYQDVNLRSYFGSIRPPTRLTFGFRLGRCIILHFPKRTFIHFFLPRRPRRLKRREKTRPGKEKGRWWTTFGKAGPIECLHSSDDTEEERNEVRGRGARKRVESIRLDDRKKQNEIRGWPKKKQRYGYHDRLPSIKKNLSKSLRISGAFKHPKYAGVVNDIAFLIENDDSFKKTKLFKLFFQNKSRSDGPTSYLRTLPAVRPSLNFLVMQYFFNTKNQINFDPVVVLNHFVAPGAAEPSTMGRANAQGRSLQKRIRSRIAFFVESLTSEKKCLAEAKNRLTHFIRLANDLRFAGTTKTTISLFPFFGATFFFLRDGVGVYNNLDAREQLLNQLRVKCWNLVGKDKIMELIEKLKNLGGIEELIKVIDMMIEIILRKRGIPYRYNSYFYEVKKMRSFLSNRTNTKTLIESVKIKSVYQSASLIAQDISFQLKNKRRSFHSIFAKIVKEIPKGVEGIRICFSGRLKDAAEKAQTKCYKHRKTSCNVFNHKIDYAPVEVSTRYGILGVKVWISYSQKKGRRAISETYEI
SIO_010081: DA397_mgp40
subclass of: SO_0000673
so part of: DA397_mgp40
location: join(20165..20238,21822..23418)
location: region:20165-23418:1
so has part: feature:20165-20238:1:exon
so has part: feature:21822-23418:1:exon

YP_009472100.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20165-20238:1:exon

position:20238:1
position: 20238
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:21822-23418:1:exon

position:21822:1
position: 21822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

DA397_mgp40
type: Exon
subclass of: SO_0000147
RO_0002162: 3702
gene: rps3
locus tag: DA397_mgp40
number: 1
SIO_010081: DA397_mgp40
subclass of: SO_0000673
so part of: DA397_mgp40
location: 20165..20238
location: region:20165-20238:1
so has part: feature:20165-20238:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:20165-20238:1:exon

DA397_mgp40
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rps3
locus tag: DA397_mgp40
note: rps3; C to U RNA editing; CGG(R) to TGG(W)
SIO_010081: DA397_mgp40
subclass of: SO_0000673
so part of: DA397_mgp40
location: 20228
location: region:20228-20228:1
so has part: feature:20228-20228:1:exon

position:20228:1
position: 20228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20228-20228:1:exon

DA397_mgp40
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
gene: rps3
locus tag: DA397_mgp40
note: cosRNA M73
SIO_010081: DA397_mgp40
subclass of: SO_0000673
so part of: DA397_mgp40
location: 20272..20316
location: region:20272-20316:1
so has part: feature:20272-20316:1:exon

position:20272:1
position: 20272
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20316:1
position: 20316
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20272-20316:1:exon

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M117
so part of: sequence
location: complement(20421..20444)
location: region:20421-20444:-1
so has part: feature:20421-20444:-1:region

position:20421:-1
position: 20421
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20444:-1
position: 20444
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20421-20444:-1:region

DA397_mgp40
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
gene: rps3
locus tag: DA397_mgp40
note: cosRNA M4
SIO_010081: DA397_mgp40
subclass of: SO_0000673
so part of: DA397_mgp40
location: 21246..21260
location: region:21246-21260:1
so has part: feature:21246-21260:1:exon

position:21246:1
position: 21246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21260:1
position: 21260
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21246-21260:1:exon

DA397_mgp40
type: Exon
subclass of: SO_0000147
RO_0002162: 3702
gene: rps3
locus tag: DA397_mgp40
number: 2
SIO_010081: DA397_mgp40
subclass of: SO_0000673
so part of: DA397_mgp40
location: 21822..23418
location: region:21822-23418:1
so has part: feature:21822-23418:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:21822-23418:1:exon

DA397_mgp40
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rps3
locus tag: DA397_mgp40
note: rps3; C to U RNA editing (minor frequency); synonymous
SIO_010081: DA397_mgp40
subclass of: SO_0000673
so part of: DA397_mgp40
location: 21873
location: region:21873-21873:1
so has part: feature:21873-21873:1:exon

position:21873:1
position: 21873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21873-21873:1:exon

DA397_mgp40
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rps3
locus tag: DA397_mgp40
note: rps3; C to U RNA editing (minor frequency); synonymous
SIO_010081: DA397_mgp40
subclass of: SO_0000673
so part of: DA397_mgp40
location: 21934
location: region:21934-21934:1
so has part: feature:21934-21934:1:exon

position:21934:1
position: 21934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21934-21934:1:exon

DA397_mgp40
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rps3
locus tag: DA397_mgp40
note: rps3; C to U RNA editing (minor frequency); synonymous
SIO_010081: DA397_mgp40
subclass of: SO_0000673
so part of: DA397_mgp40
location: 21957
location: region:21957-21957:1
so has part: feature:21957-21957:1:exon

position:21957:1
position: 21957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21957-21957:1:exon

DA397_mgp40
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rps3
locus tag: DA397_mgp40
note: rps3; C to U RNA editing (minor frequency); synonymous
SIO_010081: DA397_mgp40
subclass of: SO_0000673
so part of: DA397_mgp40
location: 22017
location: region:22017-22017:1
so has part: feature:22017-22017:1:exon

position:22017:1
position: 22017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22017-22017:1:exon

DA397_mgp40
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rps3
locus tag: DA397_mgp40
note: rps3; C to U RNA editing (minor frequency); TCA(S) to TTA(L)
SIO_010081: DA397_mgp40
subclass of: SO_0000673
so part of: DA397_mgp40
location: 22262
location: region:22262-22262:1
so has part: feature:22262-22262:1:exon

position:22262:1
position: 22262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22262-22262:1:exon

DA397_mgp40
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rps3
locus tag: DA397_mgp40
note: rps3; C to U RNA editing; synonymous
SIO_010081: DA397_mgp40
subclass of: SO_0000673
so part of: DA397_mgp40
location: 22350
location: region:22350-22350:1
so has part: feature:22350-22350:1:exon

position:22350:1
position: 22350
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22350-22350:1:exon

DA397_mgp40
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rps3
locus tag: DA397_mgp40
note: rps3; C to U RNA editing (minor frequency); CAA(Q) to TAA(*)
SIO_010081: DA397_mgp40
subclass of: SO_0000673
so part of: DA397_mgp40
location: 22381
location: region:22381-22381:1
so has part: feature:22381-22381:1:exon

position:22381:1
position: 22381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22381-22381:1:exon

DA397_mgp40
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rps3
locus tag: DA397_mgp40
note: rps3; C to U RNA editing; TCG(S) to TTG(L)
SIO_010081: DA397_mgp40
subclass of: SO_0000673
so part of: DA397_mgp40
location: 22634
location: region:22634-22634:1
so has part: feature:22634-22634:1:exon

position:22634:1
position: 22634
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22634-22634:1:exon

DA397_mgp40
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rps3
locus tag: DA397_mgp40
note: rps3; C to U RNA editing (minor frequency); synonymous
SIO_010081: DA397_mgp40
subclass of: SO_0000673
so part of: DA397_mgp40
location: 23007
location: region:23007-23007:1
so has part: feature:23007-23007:1:exon

position:23007:1
position: 23007
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23007-23007:1:exon

DA397_mgp40
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rps3
locus tag: DA397_mgp40
note: rps3; C to U RNA editing; synonymous
SIO_010081: DA397_mgp40
subclass of: SO_0000673
so part of: DA397_mgp40
location: 23091
location: region:23091-23091:1
so has part: feature:23091-23091:1:exon

position:23091:1
position: 23091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23091-23091:1:exon

DA397_mgp40
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rps3
locus tag: DA397_mgp40
note: rps3; C to U RNA editing; CCG(P) to CTG(L)
SIO_010081: DA397_mgp40
subclass of: SO_0000673
so part of: DA397_mgp40
location: 23099
location: region:23099-23099:1
so has part: feature:23099-23099:1:exon

position:23099:1
position: 23099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23099-23099:1:exon

DA397_mgp40
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rps3
locus tag: DA397_mgp40
note: rps3; C to U RNA editing; synonymous
SIO_010081: DA397_mgp40
subclass of: SO_0000673
so part of: DA397_mgp40
location: 23217
location: region:23217-23217:1
so has part: feature:23217-23217:1:exon

position:23217:1
position: 23217
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23217-23217:1:exon

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: K-1
rpt type: inverted
so part of: sequence
location: 23253..23503
location: region:23253-23503:1
so has part: feature:23253-23503:1:region

position:23253:1
position: 23253
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23503:1
position: 23503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23253-23503:1:region

DA397_mgp40
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rps3
locus tag: DA397_mgp40
note: rps3; C to U RNA editing; CGT(R) to TGT(C)
SIO_010081: DA397_mgp40
subclass of: SO_0000673
so part of: DA397_mgp40
location: 23281
location: region:23281-23281:1
so has part: feature:23281-23281:1:exon

position:23281:1
position: 23281
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23281-23281:1:exon

DA397_mgp39
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
gene: rpl16
locus tag: DA397_mgp39
so part of: sequence
location: 23285..23824
location: region:23285-23824:1
so has part: feature:23285-23824:1:exon
subclass of: SO_0000010

36335645
type: Gene
SIO_000068: ncbigene

position:23285:1
position: 23285
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23824:1
position: 23824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23285-23824:1:exon

DA397_mgp39
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3702
gene: rpl16
locus tag: DA397_mgp39
exception: RNA editing
codon start: 1
product: ribosomal protein L16
translation: MYLTIKSIMLLWKYLLVTESQVSKCGFHIVKKKGDVLYPKRTKYSKYRKGRCSRGCKPDGTKLGFGRYGIKSCKAGRLSYRAIEAARRAIIGHFHRAMSGQFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQILFEMDGVSLANARQAATLAAHKLCLSTKFVQWS
SIO_010081: DA397_mgp39
subclass of: SO_0000673
so part of: DA397_mgp39
location: 23285..23824
location: region:23285-23824:1
so has part: feature:23285-23824:1:exon

YP_009472101.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23285-23824:1:exon

DA397_mgp39
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rpl16
locus tag: DA397_mgp39
note: rpl16; C to U RNA editing; CGG(R) to TGG(W)
SIO_010081: DA397_mgp39
subclass of: SO_0000673
so part of: DA397_mgp39
location: 23318
location: region:23318-23318:1
so has part: feature:23318-23318:1:exon

position:23318:1
position: 23318
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23318-23318:1:exon

DA397_mgp39
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rpl16
locus tag: DA397_mgp39
note: rps3; C to U RNA editing; GCG(A) to GTG(V)
SIO_010081: DA397_mgp39
subclass of: SO_0000673
so part of: DA397_mgp39
location: 23318
location: region:23318-23318:1
so has part: feature:23318-23318:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:23318-23318:1:exon

DA397_mgp39
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rpl16
locus tag: DA397_mgp39
note: rpl16; C to U RNA editing (minor frequency); synonymous
SIO_010081: DA397_mgp39
subclass of: SO_0000673
so part of: DA397_mgp39
location: 23327
location: region:23327-23327:1
so has part: feature:23327-23327:1:exon

position:23327:1
position: 23327
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23327-23327:1:exon

DA397_mgp39
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rpl16
locus tag: DA397_mgp39
note: rps3; C to U RNA editing (minor frequency); TCT(S) to TTT(F)
SIO_010081: DA397_mgp39
subclass of: SO_0000673
so part of: DA397_mgp39
location: 23327
location: region:23327-23327:1
so has part: feature:23327-23327:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:23327-23327:1:exon

DA397_mgp39
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rpl16
locus tag: DA397_mgp39
note: rpl16; C to U RNA editing; CAG(Q) to TAG(*); Internal stop codon may indicate rpl16 is a pseudogene or requires alternative start codon.
SIO_010081: DA397_mgp39
subclass of: SO_0000673
so part of: DA397_mgp39
location: 23345
location: region:23345-23345:1
so has part: feature:23345-23345:1:exon

position:23345:1
position: 23345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23345-23345:1:exon

DA397_mgp39
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rpl16
locus tag: DA397_mgp39
note: rps3; C to U RNA editing; TCA(S) to TTA(L)
SIO_010081: DA397_mgp39
subclass of: SO_0000673
so part of: DA397_mgp39
location: 23345
location: region:23345-23345:1
so has part: feature:23345-23345:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:23345-23345:1:exon

DA397_mgp39
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rpl16
locus tag: DA397_mgp39
note: rpl16; C to U RNA editing (minor frequency); TCA(S) to TTA(L)
SIO_010081: DA397_mgp39
subclass of: SO_0000673
so part of: DA397_mgp39
location: 23352
location: region:23352-23352:1
so has part: feature:23352-23352:1:exon

position:23352:1
position: 23352
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23352-23352:1:exon

DA397_mgp39
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rpl16
locus tag: DA397_mgp39
note: rpl16; C to U RNA editing; ACT(T) to ATT(I)
SIO_010081: DA397_mgp39
subclass of: SO_0000673
so part of: DA397_mgp39
location: 23493
location: region:23493-23493:1
so has part: feature:23493-23493:1:exon

position:23493:1
position: 23493
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23493-23493:1:exon

DA397_mgp39
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rpl16
locus tag: DA397_mgp39
note: rpl16; C to U RNA editing (minor frequency); synonymous
SIO_010081: DA397_mgp39
subclass of: SO_0000673
so part of: DA397_mgp39
location: 23590
location: region:23590-23590:1
so has part: feature:23590-23590:1:exon

position:23590:1
position: 23590
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23590-23590:1:exon

DA397_mgp39
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rpl16
locus tag: DA397_mgp39
note: rpl16; C to U RNA editing (minor frequency); synonymous
SIO_010081: DA397_mgp39
subclass of: SO_0000673
so part of: DA397_mgp39
location: 23710
location: region:23710-23710:1
so has part: feature:23710-23710:1:exon

position:23710:1
position: 23710
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23710-23710:1:exon

DA397_mgp39
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rpl16
locus tag: DA397_mgp39
note: rpl16; C to U RNA editing; CCA(P) to CTA(L)
SIO_010081: DA397_mgp39
subclass of: SO_0000673
so part of: DA397_mgp39
location: 23724
location: region:23724-23724:1
so has part: feature:23724-23724:1:exon

position:23724:1
position: 23724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23724-23724:1:exon

DA397_mgp39
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rpl16
locus tag: DA397_mgp39
note: rpl16; C to U RNA editing; CCA(P) to CTA(L)
SIO_010081: DA397_mgp39
subclass of: SO_0000673
so part of: DA397_mgp39
location: 23790
location: region:23790-23790:1
so has part: feature:23790-23790:1:exon

position:23790:1
position: 23790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23790-23790:1:exon

DA397_mgp39
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rpl16
locus tag: DA397_mgp39
note: rpl16; C to U RNA editing; TCG(S) to TTG(L)
SIO_010081: DA397_mgp39
subclass of: SO_0000673
so part of: DA397_mgp39
location: 23796
location: region:23796-23796:1
so has part: feature:23796-23796:1:exon

position:23796:1
position: 23796
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23796-23796:1:exon

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: HH-1
rpt type: inverted
so part of: sequence
location: 23851..23952
location: region:23851-23952:1
so has part: feature:23851-23952:1:region

position:23851:1
position: 23851
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23952:1
position: 23952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23851-23952:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: C to U RNA editing (minor frequency); noncoding
so part of: sequence
location: 23929
location: region:23929-23929:1
so has part: feature:23929-23929:1:region

position:23929:1
position: 23929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23929-23929:1:region

5'UTR
type: Five Prime UTR
subclass of: SO_0000204
RO_0002162: 3702
note: nad9
so part of: sequence
location: 24422..24664
location: region:24422-24664:1
so has part: feature:24422-24664:1:region

position:24422:1
position: 24422
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24664:1
position: 24664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24422-24664:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad9; alternative 5' transcript end
so part of: sequence
location: 24463
location: region:24463-24463:1
so has part: feature:24463-24463:1:region

position:24463:1
position: 24463
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24463-24463:1:region

DA397_mgp38
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
gene: nad9
locus tag: DA397_mgp38
so part of: sequence
location: 24665..25237
location: region:24665-25237:1
so has part: feature:24665-25237:1:exon
subclass of: SO_0000010

36335646
type: Gene
SIO_000068: ncbigene

position:24665:1
position: 24665
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25237:1
position: 25237
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24665-25237:1:exon

DA397_mgp38
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3702
gene: nad9
locus tag: DA397_mgp38
exception: RNA editing
codon start: 1
product: NADH dehydrogenase subunit 9
translation: MDNQFIFKYSWETLPKKWVKKMERSEHGNRFDTNTDYLFQLLCFLKLHTYTRVQVLIDICGVDYPSRKRRFEVVYNLLSTRYNSRIRVQTSADEVTRISSVVSLFPSAGWWEREVWDMFGVSFINHPDLRRILTDYGFEGHPLRKDFPLSGYVEVRYDDPEKRVVSEPIEMTQEFRYFDFASPWEQRSDG
SIO_010081: DA397_mgp38
subclass of: SO_0000673
so part of: DA397_mgp38
location: 24665..25237
location: region:24665-25237:1
so has part: feature:24665-25237:1:exon

YP_009472102.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24665-25237:1:exon

DA397_mgp38
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad9
locus tag: DA397_mgp38
note: nad9; C to U RNA editing; TCT(S) to TTT(F)
SIO_010081: DA397_mgp38
subclass of: SO_0000673
so part of: DA397_mgp38
location: 24756
location: region:24756-24756:1
so has part: feature:24756-24756:1:exon

position:24756:1
position: 24756
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24756-24756:1:exon

DA397_mgp38
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad9
locus tag: DA397_mgp38
note: nad9; C to U RNA editing; TCG(S) to TTG(L)
SIO_010081: DA397_mgp38
subclass of: SO_0000673
so part of: DA397_mgp38
location: 24831
location: region:24831-24831:1
so has part: feature:24831-24831:1:exon

position:24831:1
position: 24831
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24831-24831:1:exon

DA397_mgp38
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad9
locus tag: DA397_mgp38
note: nad9; C to U RNA editing; CAT(H) to TAT(Y)
SIO_010081: DA397_mgp38
subclass of: SO_0000673
so part of: DA397_mgp38
location: 24854
location: region:24854-24854:1
so has part: feature:24854-24854:1:exon

position:24854:1
position: 24854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24854-24854:1:exon

DA397_mgp38
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad9
locus tag: DA397_mgp38
note: nad9; C to U RNA editing; CCG(P) to TCG(S)
SIO_010081: DA397_mgp38
subclass of: SO_0000673
so part of: DA397_mgp38
location: 24962
location: region:24962-24962:1
so has part: feature:24962-24962:1:exon

position:24962:1
position: 24962
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24962-24962:1:exon

DA397_mgp38
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad9
locus tag: DA397_mgp38
note: nad9; C to U RNA editing; CGG(R) to TGG(W)
SIO_010081: DA397_mgp38
subclass of: SO_0000673
so part of: DA397_mgp38
location: 24992
location: region:24992-24992:1
so has part: feature:24992-24992:1:exon

position:24992:1
position: 24992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24992-24992:1:exon

DA397_mgp38
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad9
locus tag: DA397_mgp38
note: nad9; C to U RNA editing (minor frequency); synonymous
SIO_010081: DA397_mgp38
subclass of: SO_0000673
so part of: DA397_mgp38
location: 25036
location: region:25036-25036:1
so has part: feature:25036-25036:1:exon

position:25036:1
position: 25036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25036-25036:1:exon

DA397_mgp38
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad9
locus tag: DA397_mgp38
note: nad9; C to U RNA editing; TCA(S) to TTA(L)
SIO_010081: DA397_mgp38
subclass of: SO_0000673
so part of: DA397_mgp38
location: 25062
location: region:25062-25062:1
so has part: feature:25062-25062:1:exon

position:25062:1
position: 25062
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25062-25062:1:exon

DA397_mgp38
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad9
locus tag: DA397_mgp38
note: nad9; C to U RNA editing; CTT(L) to TTT(F)
SIO_010081: DA397_mgp38
subclass of: SO_0000673
so part of: DA397_mgp38
location: 25103
location: region:25103-25103:1
so has part: feature:25103-25103:1:exon

position:25103:1
position: 25103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25103-25103:1:exon

DA397_mgp38
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad9
locus tag: DA397_mgp38
note: nad9; C to U RNA editing (minor frequency); CAA(Q) to TAA(*)
SIO_010081: DA397_mgp38
subclass of: SO_0000673
so part of: DA397_mgp38
location: 25181
location: region:25181-25181:1
so has part: feature:25181-25181:1:exon

position:25181:1
position: 25181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25181-25181:1:exon

3'UTR
type: Three Prime UTR
subclass of: SO_0000205
RO_0002162: 3702
note: nad9
so part of: sequence
location: 25238..25292
location: region:25238-25292:1
so has part: feature:25238-25292:1:region

position:25238:1
position: 25238
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25292:1
position: 25292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25238-25292:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M74
so part of: sequence
location: 25259..25292
location: region:25259-25292:1
so has part: feature:25259-25292:1:region

position:25259:1
position: 25259
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25259-25292:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M118
so part of: sequence
location: complement(26375..26390)
location: region:26375-26390:-1
so has part: feature:26375-26390:-1:region

position:26375:-1
position: 26375
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26390:-1
position: 26390
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26375-26390:-1:region

DA397_mgp37
type: Exon
subclass of: SO_0000147
RO_0002162: 3702
gene: nad5
locus tag: DA397_mgp37
number: 4
SIO_010081: DA397_mgp37
subclass of: SO_0000673
so part of: DA397_mgp37
location: 26817..27211
location: region:26817-27211:1
so has part: feature:26817-27211:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:26817-27211:1:exon

DA397_mgp37
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad5
locus tag: DA397_mgp37
note: nad5; C to U RNA editing; CCC(P) to CTC(L)
SIO_010081: DA397_mgp37
subclass of: SO_0000673
so part of: DA397_mgp37
location: 26838
location: region:26838-26838:1
so has part: feature:26838-26838:1:exon

position:26838:1
position: 26838
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26838-26838:1:exon

DA397_mgp37
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad5
locus tag: DA397_mgp37
note: nad5; C to U RNA editing (minor frequency); synonymous
SIO_010081: DA397_mgp37
subclass of: SO_0000673
so part of: DA397_mgp37
location: 26842
location: region:26842-26842:1
so has part: feature:26842-26842:1:exon

position:26842:1
position: 26842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26842-26842:1:exon

DA397_mgp37
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad5
locus tag: DA397_mgp37
note: nad5; C to U RNA editing; ACC(T) to ATC(I)
SIO_010081: DA397_mgp37
subclass of: SO_0000673
so part of: DA397_mgp37
location: 26898
location: region:26898-26898:1
so has part: feature:26898-26898:1:exon

position:26898:1
position: 26898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26898-26898:1:exon

DA397_mgp37
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad5
locus tag: DA397_mgp37
note: nad5; C to U RNA editing; TCA(S) to TTA(L)
SIO_010081: DA397_mgp37
subclass of: SO_0000673
so part of: DA397_mgp37
location: 26928
location: region:26928-26928:1
so has part: feature:26928-26928:1:exon

position:26928:1
position: 26928
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26928-26928:1:exon

DA397_mgp37
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad5
locus tag: DA397_mgp37
note: nad5; C to U RNA editing; CCC(P) to CTC(L)
SIO_010081: DA397_mgp37
subclass of: SO_0000673
so part of: DA397_mgp37
location: 26958
location: region:26958-26958:1
so has part: feature:26958-26958:1:exon

position:26958:1
position: 26958
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26958-26958:1:exon

DA397_mgp37
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad5
locus tag: DA397_mgp37
note: nad5; C to U RNA editing (minor frequency); synonymous
SIO_010081: DA397_mgp37
subclass of: SO_0000673
so part of: DA397_mgp37
location: 27013
location: region:27013-27013:1
so has part: feature:27013-27013:1:exon

position:27013:1
position: 27013
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27013-27013:1:exon

DA397_mgp37
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad5
locus tag: DA397_mgp37
note: nad5; C to U RNA editing (minor frequency); synonymous
SIO_010081: DA397_mgp37
subclass of: SO_0000673
so part of: DA397_mgp37
location: 27079
location: region:27079-27079:1
so has part: feature:27079-27079:1:exon

position:27079:1
position: 27079
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27079-27079:1:exon

DA397_mgp37
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
gene: nad5
locus tag: DA397_mgp37
note: cosRNA M75
SIO_010081: DA397_mgp37
subclass of: SO_0000673
so part of: DA397_mgp37
location: 28152..28171
location: region:28152-28171:1
so has part: feature:28152-28171:1:exon

position:28152:1
position: 28152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28171:1
position: 28171
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28152-28171:1:exon

DA397_mgp37
type: Exon
subclass of: SO_0000147
RO_0002162: 3702
gene: nad5
locus tag: DA397_mgp37
number: 5
SIO_010081: DA397_mgp37
subclass of: SO_0000673
so part of: DA397_mgp37
location: 28190..28336
location: region:28190-28336:1
so has part: feature:28190-28336:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:28190-28336:1:exon

DA397_mgp37
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad5
locus tag: DA397_mgp37
note: nad5; C to U RNA editing (minor frequency); GCA(A) to GTA(V)
SIO_010081: DA397_mgp37
subclass of: SO_0000673
so part of: DA397_mgp37
location: 28206
location: region:28206-28206:1
so has part: feature:28206-28206:1:exon

position:28206:1
position: 28206
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28206-28206:1:exon

DA397_mgp37
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad5
locus tag: DA397_mgp37
note: nad5; C to U RNA editing; TCA(S) to TTA(L)
SIO_010081: DA397_mgp37
subclass of: SO_0000673
so part of: DA397_mgp37
location: 28221
location: region:28221-28221:1
so has part: feature:28221-28221:1:exon

position:28221:1
position: 28221
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28221-28221:1:exon

DA397_mgp37
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad5
locus tag: DA397_mgp37
note: nad5; C to U RNA editing; TCT(S) to TTT(F)
SIO_010081: DA397_mgp37
subclass of: SO_0000673
so part of: DA397_mgp37
location: 28242
location: region:28242-28242:1
so has part: feature:28242-28242:1:exon

position:28242:1
position: 28242
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28242-28242:1:exon

DA397_mgp37
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad5
locus tag: DA397_mgp37
note: nad5; C to U RNA editing; CGT(R) to TGT(C)
SIO_010081: DA397_mgp37
subclass of: SO_0000673
so part of: DA397_mgp37
location: 28244
location: region:28244-28244:1
so has part: feature:28244-28244:1:exon

position:28244:1
position: 28244
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28244-28244:1:exon

DA397_mgp37
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad5
locus tag: DA397_mgp37
note: nad5; C to U RNA editing (minor frequency); synonymous
SIO_010081: DA397_mgp37
subclass of: SO_0000673
so part of: DA397_mgp37
location: 28255
location: region:28255-28255:1
so has part: feature:28255-28255:1:exon

position:28255:1
position: 28255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28255-28255:1:exon

DA397_mgp37
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad5
locus tag: DA397_mgp37
note: nad5; C to U RNA editing (minor frequency); synonymous
SIO_010081: DA397_mgp37
subclass of: SO_0000673
so part of: DA397_mgp37
location: 28259
location: region:28259-28259:1
so has part: feature:28259-28259:1:exon

position:28259:1
position: 28259
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28259-28259:1:exon

DA397_mgp37
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad5
locus tag: DA397_mgp37
note: nad5; C to U RNA editing; TCG(S) to TTG(L)
SIO_010081: DA397_mgp37
subclass of: SO_0000673
so part of: DA397_mgp37
location: 28284
location: region:28284-28284:1
so has part: feature:28284-28284:1:exon

position:28284:1
position: 28284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28284-28284:1:exon

3'UTR
type: Three Prime UTR
subclass of: SO_0000205
RO_0002162: 3702
note: nad5
so part of: sequence
location: 28337..28422
location: region:28337-28422:1
so has part: feature:28337-28422:1:region

position:28337:1
position: 28337
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28422:1
position: 28422
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28337-28422:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M76
so part of: sequence
location: 28392..28422
location: region:28392-28422:1
so has part: feature:28392-28422:1:region

position:28392:1
position: 28392
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28392-28422:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M196
so part of: sequence
location: complement(29007..29030)
location: region:29007-29030:-1
so has part: feature:29007-29030:-1:region

position:29007:-1
position: 29007
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29030:-1
position: 29030
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29007-29030:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: I-1
rpt type: inverted
so part of: sequence
location: 30442..30722
location: region:30442-30722:1
so has part: feature:30442-30722:1:region

position:30442:1
position: 30442
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30722:1
position: 30722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30442-30722:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M77
so part of: sequence
location: 30706..30722
location: region:30706-30722:1
so has part: feature:30706-30722:1:region

position:30706:1
position: 30706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30706-30722:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: G-1
rpt type: inverted
so part of: sequence
location: 30938..31272
location: region:30938-31272:1
so has part: feature:30938-31272:1:region

position:30938:1
position: 30938
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31272:1
position: 31272
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30938-31272:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M5
so part of: sequence
location: 31032..31069
location: region:31032-31069:1
so has part: feature:31032-31069:1:region

position:31032:1
position: 31032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31069:1
position: 31069
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31032-31069:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF315
so part of: sequence
location: 31115..32062
location: region:31115-32062:1
so has part: feature:31115-32062:1:region

position:31115:1
position: 31115
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32062:1
position: 32062
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31115-32062:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF131
so part of: sequence
location: complement(31655..32050)
location: region:31655-32050:-1
so has part: feature:31655-32050:-1:region

position:31655:-1
position: 31655
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:32050:-1
position: 32050
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31655-32050:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: H-1
so part of: sequence
location: 31725..32066
location: region:31725-32066:1
so has part: feature:31725-32066:1:region

position:31725:1
position: 31725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32066:1
position: 32066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31725-32066:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M78
so part of: sequence
location: 31772..31793
location: region:31772-31793:1
so has part: feature:31772-31793:1:region

position:31772:1
position: 31772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31793:1
position: 31793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31772-31793:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M79
so part of: sequence
location: 33125..33148
location: region:33125-33148:1
so has part: feature:33125-33148:1:region

position:33125:1
position: 33125
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33148:1
position: 33148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33125-33148:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M6
so part of: sequence
location: 33421..33444
location: region:33421-33444:1
so has part: feature:33421-33444:1:region

position:33421:1
position: 33421
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33444:1
position: 33444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33421-33444:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M119
so part of: sequence
location: complement(33602..33625)
location: region:33602-33625:-1
so has part: feature:33602-33625:-1:region

position:33602:-1
position: 33602
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:33625:-1
position: 33625
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33602-33625:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: C-2
rpt type: inverted
so part of: sequence
location: 36362..36818
location: region:36362-36818:1
so has part: feature:36362-36818:1:region

position:36362:1
position: 36362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36818:1
position: 36818
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36362-36818:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: BB-2
so part of: sequence
location: 36473..36619
location: region:36473-36619:1
so has part: feature:36473-36619:1:region

position:36473:1
position: 36473
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36619:1
position: 36619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36473-36619:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M7
so part of: sequence
location: 36600..36631
location: region:36600-36631:1
so has part: feature:36600-36631:1:region

position:36600:1
position: 36600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36631:1
position: 36631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36600-36631:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: LL-1
so part of: sequence
location: 36656..36763
location: region:36656-36763:1
so has part: feature:36656-36763:1:region

position:36656:1
position: 36656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36763:1
position: 36763
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36656-36763:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M8
so part of: sequence
location: 36683..36713
location: region:36683-36713:1
so has part: feature:36683-36713:1:region

position:36683:1
position: 36683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36713:1
position: 36713
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36683-36713:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M9
so part of: sequence
location: 36762..36793
location: region:36762-36793:1
so has part: feature:36762-36793:1:region

position:36762:1
position: 36762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36793:1
position: 36793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36762-36793:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M152
so part of: sequence
location: 41418..41460
location: region:41418-41460:1
so has part: feature:41418-41460:1:region

position:41418:1
position: 41418
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41460:1
position: 41460
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41418-41460:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M210
so part of: sequence
location: 41447..41485
location: region:41447-41485:1
so has part: feature:41447-41485:1:region

position:41447:1
position: 41447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41485:1
position: 41485
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41447-41485:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: B-1
rpt type: inverted
so part of: sequence
location: 41464..41996
location: region:41464-41996:1
so has part: feature:41464-41996:1:region

position:41464:1
position: 41464
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41996:1
position: 41996
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41464-41996:1:region

DA397_mgt02
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
gene: trnS(GCT)
locus tag: DA397_mgt02
note: anticodon:GCT; copy 1
so part of: sequence
location: 41486..41573
location: region:41486-41573:1
so has part: feature:41486-41573:1:exon
subclass of: SO_0000663
subclass of: SO_0000011

36335647
type: Gene
SIO_000068: ncbigene

position:41486:1
position: 41486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41573:1
position: 41573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41486-41573:1:exon

DA397_mgt02
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3702
gene: trnS(GCT)
locus tag: DA397_mgt02
product: tRNA-Ser
SIO_010081: DA397_mgt02
subclass of: SO_0000673
so part of: DA397_mgt02
location: 41486..41573
location: region:41486-41573:1
so has part: feature:41486-41573:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:41486-41573:1:exon

DA397_mgt02
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
gene: trnS(GCT)
locus tag: DA397_mgt02
note: cosRNA M151
SIO_010081: DA397_mgt02
subclass of: SO_0000673
so part of: DA397_mgt02
location: 41486..41511
location: region:41486-41511:1
so has part: feature:41486-41511:1:exon

position:41511:1
position: 41511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41486-41511:1:exon

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M209
so part of: sequence
location: 41537..41576
location: region:41537-41576:1
so has part: feature:41537-41576:1:region

position:41537:1
position: 41537
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41576:1
position: 41576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41537-41576:1:region

DA397_mgp36
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
gene: trnF
locus tag: DA397_mgp36
note: mutation in anticodon changed GAA(Phe) to GTA(Tyr); copy 1
pseudo: true
so part of: sequence
location: 41880..41954
location: region:41880-41954:1
so has part: feature:41880-41954:1:exon
subclass of: SO_0000011

36335683
type: Gene
SIO_000068: ncbigene

position:41880:1
position: 41880
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41954:1
position: 41954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41880-41954:1:exon

DA397_mgp36
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
gene: trnF
locus tag: DA397_mgp36
note: cosRNA M150
pseudo: true
SIO_010081: DA397_mgp36
subclass of: SO_0000673
so part of: DA397_mgp36
location: 41880..41913
location: region:41880-41913:1
so has part: feature:41880-41913:1:exon

position:41913:1
position: 41913
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41880-41913:1:exon

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M149
so part of: sequence
location: 41955..41992
location: region:41955-41992:1
so has part: feature:41955-41992:1:region

position:41955:1
position: 41955
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41992:1
position: 41992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41955-41992:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M148
so part of: sequence
location: 41977..42017
location: region:41977-42017:1
so has part: feature:41977-42017:1:region

position:41977:1
position: 41977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42017:1
position: 42017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41977-42017:1:region

DA397_mgt03
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
gene: trnP(TGG)
locus tag: DA397_mgt03
note: anticodon:TGG
so part of: sequence
location: 42116..42190
location: region:42116-42190:1
so has part: feature:42116-42190:1:exon
subclass of: SO_0000663
subclass of: SO_0000011

36335678
type: Gene
SIO_000068: ncbigene

position:42116:1
position: 42116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42190:1
position: 42190
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42116-42190:1:exon

DA397_mgt03
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3702
gene: trnP(TGG)
locus tag: DA397_mgt03
product: tRNA-Pro
SIO_010081: DA397_mgt03
subclass of: SO_0000673
so part of: DA397_mgt03
location: 42116..42190
location: region:42116-42190:1
so has part: feature:42116-42190:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:42116-42190:1:exon

DA397_mgt03
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
gene: trnP(TGG)
locus tag: DA397_mgt03
note: cosRNA M147
SIO_010081: DA397_mgt03
subclass of: SO_0000673
so part of: DA397_mgt03
location: 42116..42140
location: region:42116-42140:1
so has part: feature:42116-42140:1:exon

position:42140:1
position: 42140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42116-42140:1:exon

DA397_mgt04
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
gene: trnC(GCA)
locus tag: DA397_mgt04
note: anticodon:GCA
so part of: sequence
location: 42546..42616
location: region:42546-42616:1
so has part: feature:42546-42616:1:exon
subclass of: SO_0000663
subclass of: SO_0000011

36335679
type: Gene
SIO_000068: ncbigene

position:42546:1
position: 42546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42616:1
position: 42616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42546-42616:1:exon

DA397_mgt04
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3702
gene: trnC(GCA)
locus tag: DA397_mgt04
product: tRNA-Cys
SIO_010081: DA397_mgt04
subclass of: SO_0000673
so part of: DA397_mgt04
location: 42546..42616
location: region:42546-42616:1
so has part: feature:42546-42616:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:42546-42616:1:exon

DA397_mgt04
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
gene: trnC(GCA)
locus tag: DA397_mgt04
note: cosRNA M146
SIO_010081: DA397_mgt04
subclass of: SO_0000673
so part of: DA397_mgt04
location: 42546..42577
location: region:42546-42577:1
so has part: feature:42546-42577:1:exon

position:42577:1
position: 42577
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42546-42577:1:exon

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M208
so part of: sequence
location: 42596..42619
location: region:42596-42619:1
so has part: feature:42596-42619:1:region

position:42596:1
position: 42596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42619:1
position: 42619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42596-42619:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF199
so part of: sequence
location: complement(42615..43214)
location: region:42615-43214:-1
so has part: feature:42615-43214:-1:region

position:42615:-1
position: 42615
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:43214:-1
position: 43214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42615-43214:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: chloroplast origin
so part of: sequence
location: 42682..43620
location: region:42682-43620:1
so has part: feature:42682-43620:1:region

position:42682:1
position: 42682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43620:1
position: 43620
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42682-43620:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M145
so part of: sequence
location: 42750..42772
location: region:42750-42772:1
so has part: feature:42750-42772:1:region

position:42750:1
position: 42750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42772:1
position: 42772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42750-42772:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M92
so part of: sequence
location: complement(43271..43291)
location: region:43271-43291:-1
so has part: feature:43271-43291:-1:region

position:43271:-1
position: 43271
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:43291:-1
position: 43291
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43271-43291:-1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M143
so part of: sequence
location: 43395..43409
location: region:43395-43409:1
so has part: feature:43395-43409:1:region

position:43395:1
position: 43395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43409:1
position: 43409
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43395-43409:1:region

DA397_mgt05
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
gene: trnN(GTT)
locus tag: DA397_mgt05
note: anticodon:GTT; chloroplast-like
so part of: sequence
location: 43544..43615
location: region:43544-43615:1
so has part: feature:43544-43615:1:exon
subclass of: SO_0000663
subclass of: SO_0000011

36335680
type: Gene
SIO_000068: ncbigene

position:43544:1
position: 43544
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43615:1
position: 43615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43544-43615:1:exon

DA397_mgt05
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3702
gene: trnN(GTT)
locus tag: DA397_mgt05
product: tRNA-Asn
SIO_010081: DA397_mgt05
subclass of: SO_0000673
so part of: DA397_mgt05
location: 43544..43615
location: region:43544-43615:1
so has part: feature:43544-43615:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:43544-43615:1:exon

DA397_mgt05
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
gene: trnN(GTT)
locus tag: DA397_mgt05
note: cosRNA M142
SIO_010081: DA397_mgt05
subclass of: SO_0000673
so part of: DA397_mgt05
location: 43544..43575
location: region:43544-43575:1
so has part: feature:43544-43575:1:exon

position:43575:1
position: 43575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43544-43575:1:exon

DA397_mgt06
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
alternative label: anticodon:GTA
gene: trnY(GTA)
locus tag: DA397_mgt06
gene synonym: anticodon:GTA
note: copy 1
so part of: sequence
location: 44462..44544
location: region:44462-44544:1
so has part: feature:44462-44544:1:exon
subclass of: SO_0000663

36335681
type: Gene
SIO_000068: ncbigene

position:44462:1
position: 44462
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44544:1
position: 44544
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44462-44544:1:exon

DA397_mgt06
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3702
alternative label: anticodon:GTA
gene: trnY(GTA)
locus tag: DA397_mgt06
gene synonym: anticodon:GTA
product: tRNA-Tyr
SIO_010081: DA397_mgt06
subclass of: SO_0000673
so part of: DA397_mgt06
location: 44462..44544
location: region:44462-44544:1
so has part: feature:44462-44544:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:44462-44544:1:exon

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M207
so part of: sequence
location: 44732..44748
location: region:44732-44748:1
so has part: feature:44732-44748:1:region

position:44732:1
position: 44732
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44748:1
position: 44748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44732-44748:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M206
so part of: sequence
location: 47209..47226
location: region:47209-47226:1
so has part: feature:47209-47226:1:region

position:47209:1
position: 47209
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:47226:1
position: 47226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:47209-47226:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: N-2
rpt type: inverted
so part of: sequence
location: 48899..49185
location: region:48899-49185:1
so has part: feature:48899-49185:1:region

position:48899:1
position: 48899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:49185:1
position: 49185
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:48899-49185:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: atp6; t-element (tRNA-like structure)
so part of: sequence
location: 49221..49280
location: region:49221-49280:1
so has part: feature:49221-49280:1:region

position:49221:1
position: 49221
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:49280:1
position: 49280
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49221-49280:1:region

5'UTR
type: Five Prime UTR
subclass of: SO_0000204
RO_0002162: 3702
note: atp6
so part of: sequence
location: 49223..49422
location: region:49223-49422:1
so has part: feature:49223-49422:1:region

position:49223:1
position: 49223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:49422:1
position: 49422
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49223-49422:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: V-1
so part of: sequence
location: 49243..49418
location: region:49243-49418:1
so has part: feature:49243-49418:1:region

position:49243:1
position: 49243
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:49418:1
position: 49418
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49243-49418:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M141
so part of: sequence
location: 49267..49284
location: region:49267-49284:1
so has part: feature:49267-49284:1:region

position:49267:1
position: 49267
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:49284:1
position: 49284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49267-49284:1:region

DA397_mgp35
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
gene: atp6
locus tag: DA397_mgp35
note: copy 1
so part of: sequence
location: 49423..50580
location: region:49423-50580:1
so has part: feature:49423-50580:1:exon
subclass of: SO_0000010

36335682
type: Gene
SIO_000068: ncbigene

position:49423:1
position: 49423
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:50580:1
position: 50580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49423-50580:1:exon

DA397_mgp35
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3702
gene: atp6
locus tag: DA397_mgp35
exception: RNA editing
codon start: 1
product: ATPase subunit 6
translation: MRRIFLFDENSLNSSSTIDTSSASTIDTSFASQCTNFSSGQASGTQDTHAGIFEDCPGLNPNDERVVELQCEIREKCEALTQDPEMGLILGEALHAESDNVPFLQSIADDLTQNGVSGEAFQEALNIVGQAAASPLDQFEIVPLIPMHIGNFYFSFTNSSLFMLLTLSFFLLLIHFVTKKGGGNLVPNAWQSLVELLYDFVLNLVKEQIGGLSGNVKQMFFPCILVTFLFLLFCNLQGMIPYSFTVTSHFLITLALSFSIFIGITIVGFQRHGLHFFSFLLPAGVPLPLAPFLVLLELISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNDIFYFIGALGPLFIVLALTGLELGVAILQAYVFTILICIYLNDAINLH
SIO_010081: DA397_mgp35
subclass of: SO_0000673
so part of: DA397_mgp35
location: 49423..50580
location: region:49423-50580:1
so has part: feature:49423-50580:1:exon

YP_009472103.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:49423-50580:1:exon

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: Large1-1
rpt type: inverted
so part of: sequence
location: 49820..56409
location: region:49820-56409:1
so has part: feature:49820-56409:1:region

position:49820:1
position: 49820
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:56409:1
position: 56409
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49820-56409:1:region

DA397_mgp35
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: atp6
locus tag: DA397_mgp35
note: atp6; C to U RNA editing; CCA(P) to TCA(S)
SIO_010081: DA397_mgp35
subclass of: SO_0000673
so part of: DA397_mgp35
location: 49897
location: region:49897-49897:1
so has part: feature:49897-49897:1:exon

position:49897:1
position: 49897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49897-49897:1:exon

3'UTR
type: Three Prime UTR
subclass of: SO_0000205
RO_0002162: 3702
note: atp6
so part of: sequence
location: 50581..50625
location: region:50581-50625:1
so has part: feature:50581-50625:1:region

position:50581:1
position: 50581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:50625:1
position: 50625
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:50581-50625:1:region

DA397_mgt07
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
gene: trnS(TGA)
locus tag: DA397_mgt07
note: anticodon:TGA; copy 1
so part of: sequence
location: 50626..50712
location: region:50626-50712:1
so has part: feature:50626-50712:1:exon
subclass of: SO_0000663

36335653
type: Gene
SIO_000068: ncbigene

position:50626:1
position: 50626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:50712:1
position: 50712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:50626-50712:1:exon

DA397_mgt07
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3702
gene: trnS(TGA)
locus tag: DA397_mgt07
product: tRNA-Ser
SIO_010081: DA397_mgt07
subclass of: SO_0000673
so part of: DA397_mgt07
location: 50626..50712
location: region:50626-50712:1
so has part: feature:50626-50712:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:50626-50712:1:exon

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M205
so part of: sequence
location: 50810..50849
location: region:50810-50849:1
so has part: feature:50810-50849:1:region

position:50810:1
position: 50810
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:50849:1
position: 50849
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:50810-50849:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: Y-1
so part of: sequence
location: 50976..51150
location: region:50976-51150:1
so has part: feature:50976-51150:1:region

position:50976:1
position: 50976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:51150:1
position: 51150
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:50976-51150:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF106G
so part of: sequence
location: 53104..53424
location: region:53104-53424:1
so has part: feature:53104-53424:1:region

position:53104:1
position: 53104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:53424:1
position: 53424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:53104-53424:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF152A
so part of: sequence
location: 53969..54427
location: region:53969-54427:1
so has part: feature:53969-54427:1:region

position:53969:1
position: 53969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:54427:1
position: 54427
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:53969-54427:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M140
so part of: sequence
location: 54443..54466
location: region:54443-54466:1
so has part: feature:54443-54466:1:region

position:54443:1
position: 54443
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:54466:1
position: 54466
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:54443-54466:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M139
so part of: sequence
location: 57261..57284
location: region:57261-57284:1
so has part: feature:57261-57284:1:region

position:57261:1
position: 57261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:57284:1
position: 57284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:57261-57284:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF106F
so part of: sequence
location: 57883..58203
location: region:57883-58203:1
so has part: feature:57883-58203:1:region

position:57883:1
position: 57883
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:58203:1
position: 58203
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:57883-58203:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M91
so part of: sequence
location: complement(57936..57959)
location: region:57936-57959:-1
so has part: feature:57936-57959:-1:region

position:57936:-1
position: 57936
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:57959:-1
position: 57959
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:57936-57959:-1:region

DA397_mgp34
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
gene: nad1
locus tag: DA397_mgp34
trans splicing: true
so part of: sequence
location: join(complement(82937..83321),58315..59481,230304..234132)
location: region:58315-234132:1
so has part: feature:82937-83321:-1:exon
so has part: feature:58315-59481:1:exon
so has part: feature:230304-234132:1:exon
subclass of: SO_0000010

36335702
type: Gene
SIO_000068: ncbigene

position:58315:1
position: 58315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:234132:-1
position: 234132
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:82937-83321:-1:exon

position:82937:-1
position: 82937
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:83321:-1
position: 83321
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:58315-59481:1:exon

position:59481:1
position: 59481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:230304-234132:1:exon

position:230304:1
position: 230304
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:234132:1
position: 234132
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

DA397_mgp34
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3702
gene: nad1
locus tag: DA397_mgp34
exception: RNA editing
trans splicing: true
note: start codon produced by C-to-U RNA editing
codon start: 1
product: NADH dehydrogenase subunit 1
translation: MYIAVPAEILGIILPLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGLKLILKEPISPSSANFFLFRMAPVATFMLSLVAWAVVPFDYGMVLSDLNIGLLYLFAISSLGVYGIIIAGWSSISKYAFLGALRSAAQMVSYEVSIGLILITVLICVGSCNLSEIVMAQKQIWFGIPLFPVLVMFFISCLAETNRAPFDLPEAEAELVAGYNVEYSSMGFALFFLGEYANMILMSGLCTLFFLGGWLPILDLPIFKKIPGSIWFSIKVLFFLFLYIWVRAAFPRYRYDQLMGLGWKVFLPLSLARVVPVSGLLVTFQWLP
SIO_010081: DA397_mgp34
subclass of: SO_0000673
so part of: DA397_mgp34
location: join(complement(82937..83321),58315..58397,59290..59481,230304..230362,233874..234132)
location: region:58315-234132:1
so has part: feature:82937-83321:-1:exon
so has part: feature:58315-58397:1:exon
so has part: feature:59290-59481:1:exon
so has part: feature:230304-230362:1:exon
so has part: feature:233874-234132:1:exon

YP_009472104.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:82937-83321:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:58315-58397:1:exon

position:58397:1
position: 58397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:59290-59481:1:exon

position:59290:1
position: 59290
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:230304-230362:1:exon

position:230362:1
position: 230362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:233874-234132:1:exon

position:233874:1
position: 233874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

DA397_mgp34
type: Exon
subclass of: SO_0000147
RO_0002162: 3702
gene: nad1
locus tag: DA397_mgp34
number: 2
SIO_010081: DA397_mgp34
subclass of: SO_0000673
so part of: DA397_mgp34
location: 58315..58397
location: region:58315-58397:1
so has part: feature:58315-58397:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:58315-58397:1:exon

DA397_mgp34
type: Exon
subclass of: SO_0000147
RO_0002162: 3702
gene: nad1
locus tag: DA397_mgp34
number: 3
SIO_010081: DA397_mgp34
subclass of: SO_0000673
so part of: DA397_mgp34
location: 59290..59481
location: region:59290-59481:1
so has part: feature:59290-59481:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:59290-59481:1:exon

DA397_mgp34
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad1
locus tag: DA397_mgp34
note: nad1; C to U RNA editing; CCC(P) to TCC(S)
SIO_010081: DA397_mgp34
subclass of: SO_0000673
so part of: DA397_mgp34
location: 59311
location: region:59311-59311:1
so has part: feature:59311-59311:1:exon

position:59311:1
position: 59311
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59311-59311:1:exon

DA397_mgp34
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad1
locus tag: DA397_mgp34
note: nad1; C to U RNA editing; synonymous
SIO_010081: DA397_mgp34
subclass of: SO_0000673
so part of: DA397_mgp34
location: 59313
location: region:59313-59313:1
so has part: feature:59313-59313:1:exon

position:59313:1
position: 59313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59313-59313:1:exon

DA397_mgp34
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad1
locus tag: DA397_mgp34
note: nad1; C to U RNA editing; CGT(R) to TGT(C)
SIO_010081: DA397_mgp34
subclass of: SO_0000673
so part of: DA397_mgp34
location: 59314
location: region:59314-59314:1
so has part: feature:59314-59314:1:exon

position:59314:1
position: 59314
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59314-59314:1:exon

DA397_mgp34
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad1
locus tag: DA397_mgp34
note: nad1; C to U RNA editing; TCG(S) to TTG(L)
SIO_010081: DA397_mgp34
subclass of: SO_0000673
so part of: DA397_mgp34
location: 59321
location: region:59321-59321:1
so has part: feature:59321-59321:1:exon

position:59321:1
position: 59321
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59321-59321:1:exon

DA397_mgp34
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad1
locus tag: DA397_mgp34
note: nad1; C to U RNA editing; TCT(S) to TTT(F)
SIO_010081: DA397_mgp34
subclass of: SO_0000673
so part of: DA397_mgp34
location: 59357
location: region:59357-59357:1
so has part: feature:59357-59357:1:exon

position:59357:1
position: 59357
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59357-59357:1:exon

DA397_mgp34
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad1
locus tag: DA397_mgp34
note: nad1; C to U RNA editing; CTT(L) to TTT(F)
SIO_010081: DA397_mgp34
subclass of: SO_0000673
so part of: DA397_mgp34
location: 59392
location: region:59392-59392:1
so has part: feature:59392-59392:1:exon

position:59392:1
position: 59392
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59392-59392:1:exon

DA397_mgp34
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad1
locus tag: DA397_mgp34
note: nad1; C to U RNA editing; CGT(R) to TGT(C)
SIO_010081: DA397_mgp34
subclass of: SO_0000673
so part of: DA397_mgp34
location: 59401
location: region:59401-59401:1
so has part: feature:59401-59401:1:exon

position:59401:1
position: 59401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59401-59401:1:exon

DA397_mgp34
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad1
locus tag: DA397_mgp34
note: nad1; C to U RNA editing; TCA(S) to TTA(L)
SIO_010081: DA397_mgp34
subclass of: SO_0000673
so part of: DA397_mgp34
location: 59456
location: region:59456-59456:1
so has part: feature:59456-59456:1:exon

position:59456:1
position: 59456
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:59456-59456:1:exon

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M204
so part of: sequence
location: 60844..60878
location: region:60844-60878:1
so has part: feature:60844-60878:1:region

position:60844:1
position: 60844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:60878:1
position: 60878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:60844-60878:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: SS-1
rpt type: direct
so part of: sequence
location: 60912..60988
location: region:60912-60988:1
so has part: feature:60912-60988:1:region

position:60912:1
position: 60912
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:60988:1
position: 60988
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:60912-60988:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF251
so part of: sequence
location: 63611..64366
location: region:63611-64366:1
so has part: feature:63611-64366:1:region

position:63611:1
position: 63611
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:64366:1
position: 64366
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:63611-64366:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M27
so part of: sequence
location: complement(65441..65462)
location: region:65441-65462:-1
so has part: feature:65441-65462:-1:region

position:65441:-1
position: 65441
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:65462:-1
position: 65462
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:65441-65462:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF105A
so part of: sequence
location: complement(65469..65786)
location: region:65469-65786:-1
so has part: feature:65469-65786:-1:region

position:65469:-1
position: 65469
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:65786:-1
position: 65786
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:65469-65786:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: EE-2
rpt type: direct
so part of: sequence
location: 65547..65673
location: region:65547-65673:1
so has part: feature:65547-65673:1:region

position:65547:1
position: 65547
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:65673:1
position: 65673
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:65547-65673:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: Q-1
rpt type: direct
so part of: sequence
location: 66858..67062
location: region:66858-67062:1
so has part: feature:66858-67062:1:region

position:66858:1
position: 66858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:67062:1
position: 67062
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:66858-67062:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M90
so part of: sequence
location: complement(66871..66910)
location: region:66871-66910:-1
so has part: feature:66871-66910:-1:region

position:66871:-1
position: 66871
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:66910:-1
position: 66910
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:66871-66910:-1:region

3'UTR
type: Three Prime UTR
subclass of: SO_0000205
RO_0002162: 3702
note: atp1
so part of: sequence
location: complement(66938..67097)
location: region:66938-67097:-1
so has part: feature:66938-67097:-1:region

position:66938:-1
position: 66938
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:67097:-1
position: 67097
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:66938-67097:-1:region

DA397_mgp33
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
gene: atp1
locus tag: DA397_mgp33
so part of: sequence
location: complement(67098..68621)
location: region:67098-68621:-1
so has part: feature:67098-68621:-1:exon
subclass of: SO_0000010
subclass of: SO_0000011

36335640
type: Gene
SIO_000068: ncbigene

position:67098:-1
position: 67098
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:68621:-1
position: 68621
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:67098-68621:-1:exon

DA397_mgp33
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3702
gene: atp1
locus tag: DA397_mgp33
exception: RNA editing
codon start: 1
product: ATPase subunit 1
translation: MELSPRAAELTNLFESRIRNFYANFQVDEIGRVVSVGDGIAQVYGLNEIQAGEMVLFANGVKGMALNLENENVGIVVFGGDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDGKGALSDHEQRRVEVKAPGILERKSVHEPMQTGLKAVDSLVPIGRGQRELLIGDRQTGKTTIAIDTILNQKQINSRATSESETMYCVYVAIGQKRSTVGQLIQTLEEANALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAFPGDVFYLHSRLLERAAKRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLDRISQYEKAILNSVKPELLQALKGGLTNERKMELDAFLKERALALI
SIO_010081: DA397_mgp33
subclass of: SO_0000673
so part of: DA397_mgp33
location: complement(67098..68621)
location: region:67098-68621:-1
so has part: feature:67098-68621:-1:exon

YP_009472105.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:67098-68621:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: atp1; C to U RNA editing; CCA(P) to CTA(L)
so part of: sequence
location: 67138
location: region:67138-67138:1
so has part: feature:67138-67138:1:region

position:67138:1
position: 67138
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:67138-67138:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: atp1; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 67197
location: region:67197-67197:1
so has part: feature:67197-67197:1:region

position:67197:1
position: 67197
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:67197-67197:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: atp1; C to U RNA editing; CCA(P) to CTA(L)
so part of: sequence
location: 67207
location: region:67207-67207:1
so has part: feature:67207-67207:1:region

position:67207:1
position: 67207
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:67207-67207:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: atp1; C to U RNA editing; CCG(P) to CTG(L)
so part of: sequence
location: 67330
location: region:67330-67330:1
so has part: feature:67330-67330:1:region

position:67330:1
position: 67330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:67330-67330:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: atp1; C to U RNA editing; TCA(S) to TTA(L)
so part of: sequence
location: 67444
location: region:67444-67444:1
so has part: feature:67444-67444:1:region

position:67444:1
position: 67444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:67444-67444:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: atp1; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 67512
location: region:67512-67512:1
so has part: feature:67512-67512:1:region

position:67512:1
position: 67512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:67512-67512:1:region

DA397_mgp33
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
gene: atp1
locus tag: DA397_mgp33
note: cosRNA M89
SIO_010081: DA397_mgp33
subclass of: SO_0000673
so part of: DA397_mgp33
location: complement(68430..68465)
location: region:68430-68465:-1
so has part: feature:68430-68465:-1:exon

position:68430:-1
position: 68430
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:68465:-1
position: 68465
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:68430-68465:-1:exon

5'UTR
type: Five Prime UTR
subclass of: SO_0000204
RO_0002162: 3702
note: atp1
so part of: sequence
location: complement(68622..68982)
location: region:68622-68982:-1
so has part: feature:68622-68982:-1:region

position:68622:-1
position: 68622
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:68982:-1
position: 68982
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:68622-68982:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: T-1
rpt type: inverted
so part of: sequence
location: 68660..68844
location: region:68660-68844:1
so has part: feature:68660-68844:1:region

position:68660:1
position: 68660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:68844:1
position: 68844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:68660-68844:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M138
so part of: sequence
location: 68686..68709
location: region:68686-68709:1
so has part: feature:68686-68709:1:region

position:68686:1
position: 68686
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:68709:1
position: 68709
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:68686-68709:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: atp1; alternative 5' transcript end
so part of: sequence
location: 68745
location: region:68745-68745:1
so has part: feature:68745-68745:1:region

position:68745:1
position: 68745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:68745-68745:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF294
so part of: sequence
location: complement(68768..69652)
location: region:68768-69652:-1
so has part: feature:68768-69652:-1:region

position:68768:-1
position: 68768
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:69652:-1
position: 69652
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:68768-69652:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: atp1; alternative 5' transcript end
so part of: sequence
location: 68888
location: region:68888-68888:1
so has part: feature:68888-68888:1:region

position:68888:1
position: 68888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:68888-68888:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF101B
so part of: sequence
location: complement(69711..70016)
location: region:69711-70016:-1
so has part: feature:69711-70016:-1:region

position:69711:-1
position: 69711
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:70016:-1
position: 70016
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:69711-70016:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF113
so part of: sequence
location: complement(70152..70493)
location: region:70152-70493:-1
so has part: feature:70152-70493:-1:region

position:70152:-1
position: 70152
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:70493:-1
position: 70493
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:70152-70493:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: atp1; alternative 5' transcript end (minor frequency)
so part of: sequence
location: 70518
location: region:70518-70518:1
so has part: feature:70518-70518:1:region

position:70518:1
position: 70518
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:70518-70518:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M26
so part of: sequence
location: complement(71440..71463)
location: region:71440-71463:-1
so has part: feature:71440-71463:-1:region

position:71440:-1
position: 71440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:71463:-1
position: 71463
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:71440-71463:-1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M137
so part of: sequence
location: 71869..71891
location: region:71869-71891:1
so has part: feature:71869-71891:1:region

position:71869:1
position: 71869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:71891:1
position: 71891
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:71869-71891:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M88
so part of: sequence
location: complement(71876..71899)
location: region:71876-71899:-1
so has part: feature:71876-71899:-1:region

position:71876:-1
position: 71876
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:71899:-1
position: 71899
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:71876-71899:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: EE-1
rpt type: direct
so part of: sequence
location: 73611..73737
location: region:73611-73737:1
so has part: feature:73611-73737:1:region

position:73611:1
position: 73611
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:73737:1
position: 73737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:73611-73737:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF145B
so part of: sequence
location: 73865..74302
location: region:73865-74302:1
so has part: feature:73865-74302:1:region

position:73865:1
position: 73865
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:74302:1
position: 74302
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:73865-74302:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M136
so part of: sequence
location: 74083..74106
location: region:74083-74106:1
so has part: feature:74083-74106:1:region

position:74083:1
position: 74083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:74106:1
position: 74106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:74083-74106:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF102
so part of: sequence
location: 75447..75815
location: region:75447-75815:1
so has part: feature:75447-75815:1:region

position:75447:1
position: 75447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:75815:1
position: 75815
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:75447-75815:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M25
so part of: sequence
location: complement(76574..76597)
location: region:76574-76597:-1
so has part: feature:76574-76597:-1:region

position:76574:-1
position: 76574
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:76597:-1
position: 76597
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:76574-76597:-1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M135
so part of: sequence
location: 77339..77362
location: region:77339-77362:1
so has part: feature:77339-77362:1:region

position:77339:1
position: 77339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:77362:1
position: 77362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:77339-77362:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF205
so part of: sequence
location: complement(77477..78094)
location: region:77477-78094:-1
so has part: feature:77477-78094:-1:region

position:77477:-1
position: 77477
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:78094:-1
position: 78094
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:77477-78094:-1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M134
so part of: sequence
location: 77752..77775
location: region:77752-77775:1
so has part: feature:77752-77775:1:region

position:77752:1
position: 77752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:77775:1
position: 77775
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:77752-77775:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M24
so part of: sequence
location: complement(77937..77960)
location: region:77937-77960:-1
so has part: feature:77937-77960:-1:region

position:77937:-1
position: 77937
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:77960:-1
position: 77960
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:77937-77960:-1:region

5'UTR
type: Five Prime UTR
subclass of: SO_0000204
RO_0002162: 3702
note: rps7
so part of: sequence
location: 79111..79558
location: region:79111-79558:1
so has part: feature:79111-79558:1:region

position:79111:1
position: 79111
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:79558:1
position: 79558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:79111-79558:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: CC-1
rpt type: direct
so part of: sequence
location: 79223..79370
location: region:79223-79370:1
so has part: feature:79223-79370:1:region

position:79223:1
position: 79223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:79370:1
position: 79370
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:79223-79370:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M133
so part of: sequence
location: 79375..79398
location: region:79375-79398:1
so has part: feature:79375-79398:1:region

position:79375:1
position: 79375
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:79398:1
position: 79398
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:79375-79398:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M132
so part of: sequence
location: 79507..79530
location: region:79507-79530:1
so has part: feature:79507-79530:1:region

position:79507:1
position: 79507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:79530:1
position: 79530
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:79507-79530:1:region

DA397_mgp32
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
gene: rps7
locus tag: DA397_mgp32
so part of: sequence
location: 79559..80005
location: region:79559-80005:1
so has part: feature:79559-80005:1:exon
subclass of: SO_0000010

36335652
type: Gene
SIO_000068: ncbigene

position:79559:1
position: 79559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:80005:1
position: 80005
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:79559-80005:1:exon

DA397_mgp32
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3702
gene: rps7
locus tag: DA397_mgp32
exception: RNA editing
codon start: 1
product: ribosomal protein S7
translation: MGGLDGEQKLLIKKLVNFRMKEGKRTRVRAIVYQTFHRPARTERDVIKLMVDAVENIKPICEVAKVGVAGTIYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCLFAEILDAYQKRGSARRKRENLHGLASTNRSFAHFRWW
SIO_010081: DA397_mgp32
subclass of: SO_0000673
so part of: DA397_mgp32
location: 79559..80005
location: region:79559-80005:1
so has part: feature:79559-80005:1:exon

YP_009472106.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:79559-80005:1:exon

DA397_mgp32
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rps7
locus tag: DA397_mgp32
note: rps7; C to U RNA editing; TCA(S) to TTA(L)
SIO_010081: DA397_mgp32
subclass of: SO_0000673
so part of: DA397_mgp32
location: 79890
location: region:79890-79890:1
so has part: feature:79890-79890:1:exon

position:79890:1
position: 79890
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:79890-79890:1:exon

3'UTR
type: Three Prime UTR
subclass of: SO_0000205
RO_0002162: 3702
note: rps7
so part of: sequence
location: 80006..80356
location: region:80006-80356:1
so has part: feature:80006-80356:1:region

position:80006:1
position: 80006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:80356:1
position: 80356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:80006-80356:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: W-1
rpt type: direct
so part of: sequence
location: 80177..80360
location: region:80177-80360:1
so has part: feature:80177-80360:1:region

position:80177:1
position: 80177
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:80360:1
position: 80360
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:80177-80360:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M100
so part of: sequence
location: 80325..80356
location: region:80325-80356:1
so has part: feature:80325-80356:1:region

position:80325:1
position: 80325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:80325-80356:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M23
so part of: sequence
location: complement(80563..80586)
location: region:80563-80586:-1
so has part: feature:80563-80586:-1:region

position:80563:-1
position: 80563
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:80586:-1
position: 80586
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:80563-80586:-1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M87
so part of: sequence
location: complement(81289..81312)
location: region:81289-81312:-1
so has part: feature:81289-81312:-1:region

position:81289:-1
position: 81289
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:81312:-1
position: 81312
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:81289-81312:-1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M22
so part of: sequence
location: complement(81633..81649)
location: region:81633-81649:-1
so has part: feature:81633-81649:-1:region

position:81633:-1
position: 81633
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:81649:-1
position: 81649
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:81633-81649:-1:region

exon
type: Exon
subclass of: SO_0000147
RO_0002162: 3702
number: 1
so part of: sequence
location: complement(82935..83321)
location: region:82935-83321:-1
so has part: feature:82935-83321:-1:region

position:82935:-1
position: 82935
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:82935-83321:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad1; C to U RNA editing; CGG(R) to TGG(W)
so part of: sequence
location: 82946
location: region:82946-82946:1
so has part: feature:82946-82946:1:region

position:82946:1
position: 82946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:82946-82946:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad1; C to U RNA editing; CCG(P) to CTG(L)
so part of: sequence
location: 83014
location: region:83014-83014:1
so has part: feature:83014-83014:1:region

position:83014:1
position: 83014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:83014-83014:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad1; C to U RNA editing; CCG(P) to TTG(L)
so part of: sequence
location: 83015
location: region:83015-83015:1
so has part: feature:83015-83015:1:region

position:83015:1
position: 83015
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:83015-83015:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad1; C to U RNA editing; CGG(R) to TGG(W)
so part of: sequence
location: 83057
location: region:83057-83057:1
so has part: feature:83057-83057:1:region

position:83057:1
position: 83057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:83057-83057:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad1; C to U RNA editing; TCG(S) to TTG(L)
so part of: sequence
location: 83155
location: region:83155-83155:1
so has part: feature:83155-83155:1:region

position:83155:1
position: 83155
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:83155-83155:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad1; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 83273
location: region:83273-83273:1
so has part: feature:83273-83273:1:region

position:83273:1
position: 83273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:83273-83273:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad1; C to U RNA editing (minor frequency); CCA(P) to CTA(L)
so part of: sequence
location: 83278
location: region:83278-83278:1
so has part: feature:83278-83278:1:region

position:83278:1
position: 83278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:83278-83278:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad1; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 83282
location: region:83282-83282:1
so has part: feature:83282-83282:1:region

position:83282:1
position: 83282
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:83282-83282:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad1; C to U RNA editing; ACG(T) to ATG(M)
so part of: sequence
location: 83320
location: region:83320-83320:1
so has part: feature:83320-83320:1:region

position:83320:1
position: 83320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:83320-83320:1:region

5'UTR
type: Five Prime UTR
subclass of: SO_0000204
RO_0002162: 3702
note: nad1
so part of: sequence
location: complement(83322..83966)
location: region:83322-83966:-1
so has part: feature:83322-83966:-1:region

position:83322:-1
position: 83322
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:83966:-1
position: 83966
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:83322-83966:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad1; alternative 5' transcript end (minor frequency)
so part of: sequence
location: 83470
location: region:83470-83470:1
so has part: feature:83470-83470:1:region

position:83470:1
position: 83470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:83470-83470:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF291
so part of: sequence
location: complement(83519..84394)
location: region:83519-84394:-1
so has part: feature:83519-84394:-1:region

position:83519:-1
position: 83519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:84394:-1
position: 84394
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:83519-84394:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad1; alternative 5' transcript end (minor frequency)
so part of: sequence
location: 83676
location: region:83676-83676:1
so has part: feature:83676-83676:1:region

position:83676:1
position: 83676
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:83676-83676:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: t-element (tRNA-like structure) in ORF291
so part of: sequence
location: complement(83918..83962)
location: region:83918-83962:-1
so has part: feature:83918-83962:-1:region

position:83918:-1
position: 83918
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:83962:-1
position: 83962
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:83918-83962:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: D-2
rpt type: inverted
so part of: sequence
location: 84089..84540
location: region:84089-84540:1
so has part: feature:84089-84540:1:region

position:84089:1
position: 84089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:84540:1
position: 84540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:84089-84540:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M21
so part of: sequence
location: complement(85158..85181)
location: region:85158-85181:-1
so has part: feature:85158-85181:-1:region

position:85158:-1
position: 85158
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:85181:-1
position: 85181
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:85158-85181:-1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M203
so part of: sequence
location: 86225..86239
location: region:86225-86239:1
so has part: feature:86225-86239:1:region

position:86225:1
position: 86225
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:86239:1
position: 86239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:86225-86239:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M131
so part of: sequence
location: 86560..86583
location: region:86560-86583:1
so has part: feature:86560-86583:1:region

position:86560:1
position: 86560
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:86583:1
position: 86583
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:86560-86583:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M20
so part of: sequence
location: complement(86690..86713)
location: region:86690-86713:-1
so has part: feature:86690-86713:-1:region

position:86690:-1
position: 86690
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:86713:-1
position: 86713
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:86690-86713:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: Z-2
rpt type: direct
so part of: sequence
location: 87937..88078
location: region:87937-88078:1
so has part: feature:87937-88078:1:region

position:87937:1
position: 87937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:88078:1
position: 88078
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:87937-88078:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M130
so part of: sequence
location: 88071..88108
location: region:88071-88108:1
so has part: feature:88071-88108:1:region

position:88071:1
position: 88071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:88108:1
position: 88108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:88071-88108:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: OO-1
so part of: sequence
location: 88445..88535
location: region:88445-88535:1
so has part: feature:88445-88535:1:region

position:88445:1
position: 88445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:88535:1
position: 88535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:88445-88535:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF111C
so part of: sequence
location: 89188..89523
location: region:89188-89523:1
so has part: feature:89188-89523:1:region

position:89188:1
position: 89188
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:89523:1
position: 89523
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:89188-89523:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF136A
so part of: sequence
location: 90229..90639
location: region:90229-90639:1
so has part: feature:90229-90639:1:region

position:90229:1
position: 90229
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:90639:1
position: 90639
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:90229-90639:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF136B
so part of: sequence
location: 91028..91438
location: region:91028-91438:1
so has part: feature:91028-91438:1:region

position:91028:1
position: 91028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:91438:1
position: 91438
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:91028-91438:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M129
so part of: sequence
location: 92499..92522
location: region:92499-92522:1
so has part: feature:92499-92522:1:region

position:92499:1
position: 92499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:92522:1
position: 92522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:92499-92522:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M86
so part of: sequence
location: complement(92783..92818)
location: region:92783-92818:-1
so has part: feature:92783-92818:-1:region

position:92783:-1
position: 92783
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:92818:-1
position: 92818
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:92783-92818:-1:region

3'UTR
type: Three Prime UTR
subclass of: SO_0000205
RO_0002162: 3702
note: nad2
so part of: sequence
location: complement(92784..92818)
location: region:92784-92818:-1
so has part: feature:92784-92818:-1:region

position:92784:-1
position: 92784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:92784-92818:-1:region

DA397_mgp31
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
gene: nad2
locus tag: DA397_mgp31
trans splicing: true
so part of: sequence
location: join(161832..163357,complement(92819..98042))
location: region:92819-163357:1
so has part: feature:161832-163357:1:exon
so has part: feature:92819-98042:-1:exon
subclass of: SO_0000010

36335684
type: Gene
SIO_000068: ncbigene

position:92819:1
position: 92819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:163357:-1
position: 163357
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:161832-163357:1:exon

position:161832:1
position: 161832
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:163357:1
position: 163357
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:92819-98042:-1:exon

position:92819:-1
position: 92819
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:98042:-1
position: 98042
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

DA397_mgp31
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3702
gene: nad2
locus tag: DA397_mgp31
exception: RNA editing
trans splicing: true
codon start: 1
product: NADH dehydrogenase subunit 2
translation: MFNLFLAVFPEIFIINATFILLIHGVVFSTSKKYDYPPLASNVGWLGLLSVLITLLLLAAGAPLLTIAHLFWNNLFRRDNFTYFCQIFLLLSTAGTISMCFDFFDQERFDAFEFIVLILLSTCGMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILLFPCSMIYGSTGATHFDQLAKILTGYEITGARSSGIFMGILFIAVGFLFKITAVPFHMWAPDIYEGSPTPVTAFLSIAPKISIFANILRVFIYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAYSSIGHVGYICIGFSCGTIEGIQSLLIGIFIYALMTMDAFAIVLALRQTRVKYIADLGALAKTNPILAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLALVGVVTSVIGCFYYIRLVKRMFFDTPRTWILYEPMDRNKSLLLAMTSFFITLFLLYPSPLFSVTHQMALSLYL
SIO_010081: DA397_mgp31
subclass of: SO_0000673
so part of: DA397_mgp31
location: join(161832..161984,162966..163357,complement(97882..98042),complement(94666..95238),complement(92819..93006))
location: region:92819-163357:1
so has part: feature:161832-161984:1:exon
so has part: feature:162966-163357:1:exon
so has part: feature:97882-98042:-1:exon
so has part: feature:94666-95238:-1:exon
so has part: feature:92819-93006:-1:exon

YP_009472107.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:161832-161984:1:exon

position:161984:1
position: 161984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:162966-163357:1:exon

position:162966:1
position: 162966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:97882-98042:-1:exon

position:97882:-1
position: 97882
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:94666-95238:-1:exon

position:94666:-1
position: 94666
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:95238:-1
position: 95238
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:92819-93006:-1:exon

position:93006:-1
position: 93006
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

DA397_mgp31
type: Exon
subclass of: SO_0000147
RO_0002162: 3702
gene: nad2
locus tag: DA397_mgp31
number: 5
SIO_010081: DA397_mgp31
subclass of: SO_0000673
so part of: DA397_mgp31
location: complement(92819..93007)
location: region:92819-93007:-1
so has part: feature:92819-93007:-1:exon

position:93007:-1
position: 93007
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:92819-93007:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad2; C to U RNA editing; TCA(S) to TTA(L)
so part of: sequence
location: 92829
location: region:92829-92829:1
so has part: feature:92829-92829:1:region

position:92829:1
position: 92829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:92829-92829:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad2; C to U RNA editing; TCC(S) to TTC(F)
so part of: sequence
location: 92883
location: region:92883-92883:1
so has part: feature:92883-92883:1:region

position:92883:1
position: 92883
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:92883-92883:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad2; C to U RNA editing; TCA(S) to TTA(L)
so part of: sequence
location: 92886
location: region:92886-92886:1
so has part: feature:92886-92886:1:region

position:92886:1
position: 92886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:92886-92886:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M202
so part of: sequence
location: 93683..93706
location: region:93683-93706:1
so has part: feature:93683-93706:1:region

position:93683:1
position: 93683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:93706:1
position: 93706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:93683-93706:1:region

DA397_mgp31
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad2
locus tag: DA397_mgp31
note: open reading frame - ORF107H
SIO_010081: DA397_mgp31
subclass of: SO_0000673
so part of: DA397_mgp31
location: complement(94017..94397)
location: region:94017-94397:-1
so has part: feature:94017-94397:-1:exon

position:94017:-1
position: 94017
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:94397:-1
position: 94397
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:94017-94397:-1:exon

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M128
so part of: sequence
location: 94326..94341
location: region:94326-94341:1
so has part: feature:94326-94341:1:region

position:94326:1
position: 94326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:94341:1
position: 94341
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:94326-94341:1:region

DA397_mgp31
type: Exon
subclass of: SO_0000147
RO_0002162: 3702
gene: nad2
locus tag: DA397_mgp31
number: 4
SIO_010081: DA397_mgp31
subclass of: SO_0000673
so part of: DA397_mgp31
location: complement(94667..95239)
location: region:94667-95239:-1
so has part: feature:94667-95239:-1:exon

position:94667:-1
position: 94667
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:95239:-1
position: 95239
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:94667-95239:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad2; C to U RNA editing; CGT(R) to TGT(C)
so part of: sequence
location: 94669
location: region:94669-94669:1
so has part: feature:94669-94669:1:region

position:94669:1
position: 94669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:94669-94669:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad2; C to U RNA editing; CCA(P) to CTA(L)
so part of: sequence
location: 94698
location: region:94698-94698:1
so has part: feature:94698-94698:1:region

position:94698:1
position: 94698
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:94698-94698:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad2; C to U RNA editing; CCA(P) to TTA(L)
so part of: sequence
location: 94699
location: region:94699-94699:1
so has part: feature:94699-94699:1:region

position:94699:1
position: 94699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:94699-94699:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad2; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 94745
location: region:94745-94745:1
so has part: feature:94745-94745:1:region

position:94745:1
position: 94745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:94745-94745:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad2; C to U RNA editing; TCG(S) to TTG(L)
so part of: sequence
location: 94818
location: region:94818-94818:1
so has part: feature:94818-94818:1:region

position:94818:1
position: 94818
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:94818-94818:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad2; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 94871
location: region:94871-94871:1
so has part: feature:94871-94871:1:region

position:94871:1
position: 94871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:94871-94871:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad2; C to U RNA editing; TCA(S) to TTA(L)
so part of: sequence
location: 94887
location: region:94887-94887:1
so has part: feature:94887-94887:1:region

position:94887:1
position: 94887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:94887-94887:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad2; C to U RNA editing; ACT(T) to ATT(I)
so part of: sequence
location: 94983
location: region:94983-94983:1
so has part: feature:94983-94983:1:region

position:94983:1
position: 94983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:94983-94983:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad2; C to U RNA editing; CGT(R) to TGT(C)
so part of: sequence
location: 94987
location: region:94987-94987:1
so has part: feature:94987-94987:1:region

position:94987:1
position: 94987
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:94987-94987:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad2; C to U RNA editing; CAT(H) to TAT(Y)
so part of: sequence
location: 95017
location: region:95017-95017:1
so has part: feature:95017-95017:1:region

position:95017:1
position: 95017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:95017-95017:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad2; C to U RNA editing; CCT(P) to CTT(L)
so part of: sequence
location: 95025
location: region:95025-95025:1
so has part: feature:95025-95025:1:region

position:95025:1
position: 95025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:95025-95025:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad2; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 95090
location: region:95090-95090:1
so has part: feature:95090-95090:1:region

position:95090:1
position: 95090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:95090-95090:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad2; C to U RNA editing; TCT(S) to TTT(F)
so part of: sequence
location: 95136
location: region:95136-95136:1
so has part: feature:95136-95136:1:region

position:95136:1
position: 95136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:95136-95136:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad2; C to U RNA editing; TCT(S) to TTT(F)
so part of: sequence
location: 95157
location: region:95157-95157:1
so has part: feature:95157-95157:1:region

position:95157:1
position: 95157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:95157-95157:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M127
so part of: sequence
location: 95384..95400
location: region:95384-95400:1
so has part: feature:95384-95400:1:region

position:95384:1
position: 95384
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:95400:1
position: 95400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:95384-95400:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: NN-1
rpt type: direct
so part of: sequence
location: 96728..96797
location: region:96728-96797:1
so has part: feature:96728-96797:1:region

position:96728:1
position: 96728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:96797:1
position: 96797
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:96728-96797:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M201
so part of: sequence
location: 97311..97334
location: region:97311-97334:1
so has part: feature:97311-97334:1:region

position:97311:1
position: 97311
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:97334:1
position: 97334
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:97311-97334:1:region

DA397_mgp31
type: Exon
subclass of: SO_0000147
RO_0002162: 3702
gene: nad2
locus tag: DA397_mgp31
number: 3
SIO_010081: DA397_mgp31
subclass of: SO_0000673
so part of: DA397_mgp31
location: complement(97880..98041)
location: region:97880-98041:-1
so has part: feature:97880-98041:-1:exon

position:97880:-1
position: 97880
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:98041:-1
position: 98041
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:97880-98041:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad2; C to U RNA editing; TCT(S) to TTT(F)
so part of: sequence
location: 97926
location: region:97926-97926:1
so has part: feature:97926-97926:1:region

position:97926:1
position: 97926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:97926-97926:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad2; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 97979
location: region:97979-97979:1
so has part: feature:97979-97979:1:region

position:97979:1
position: 97979
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:97979-97979:1:region

DA397_mgt08
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
alternative label: anticodon:GTA
gene: trnY(GTA)
locus tag: DA397_mgt08
gene synonym: anticodon:GTA
note: copy 2
so part of: sequence
location: complement(98586..98660)
location: region:98586-98660:-1
so has part: feature:98586-98660:-1:exon
subclass of: SO_0000663

36335704
type: Gene
SIO_000068: ncbigene

position:98586:-1
position: 98586
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:98660:-1
position: 98660
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:98586-98660:-1:exon

DA397_mgt08
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3702
alternative label: anticodon:GTA
gene: trnY(GTA)
locus tag: DA397_mgt08
gene synonym: anticodon:GTA
product: tRNA-Tyr
SIO_010081: DA397_mgt08
subclass of: SO_0000673
so part of: DA397_mgt08
location: complement(98586..98660)
location: region:98586-98660:-1
so has part: feature:98586-98660:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:98586-98660:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: chloroplast origin
so part of: sequence
location: 99273..99767
location: region:99273-99767:1
so has part: feature:99273-99767:1:region

position:99273:1
position: 99273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:99767:1
position: 99767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:99273-99767:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M85
so part of: sequence
location: complement(99371..99399)
location: region:99371-99399:-1
so has part: feature:99371-99399:-1:region

position:99371:-1
position: 99371
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:99399:-1
position: 99399
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:99371-99399:-1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M126
so part of: sequence
location: 101093..101107
location: region:101093-101107:1
so has part: feature:101093-101107:1:region

position:101093:1
position: 101093
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:101107:1
position: 101107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:101093-101107:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M19
so part of: sequence
location: complement(101769..101792)
location: region:101769-101792:-1
so has part: feature:101769-101792:-1:region

position:101769:-1
position: 101769
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:101792:-1
position: 101792
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:101769-101792:-1:region

DA397_mgt09
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
gene: trnM(CAT)
locus tag: DA397_mgt09
note: anticodon:CAT; chloroplast-like
so part of: sequence
location: 102603..102675
location: region:102603-102675:1
so has part: feature:102603-102675:1:exon
subclass of: SO_0000663
subclass of: SO_0000011

36335685
type: Gene
SIO_000068: ncbigene

position:102603:1
position: 102603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:102675:1
position: 102675
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:102603-102675:1:exon

DA397_mgt09
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3702
gene: trnM(CAT)
locus tag: DA397_mgt09
product: tRNA-Met
SIO_010081: DA397_mgt09
subclass of: SO_0000673
so part of: DA397_mgt09
location: 102603..102675
location: region:102603-102675:1
so has part: feature:102603-102675:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:102603-102675:1:exon

DA397_mgt09
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
gene: trnM(CAT)
locus tag: DA397_mgt09
note: cosRNA M125
SIO_010081: DA397_mgt09
subclass of: SO_0000673
so part of: DA397_mgt09
location: 102603..102634
location: region:102603-102634:1
so has part: feature:102603-102634:1:exon

position:102634:1
position: 102634
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:102603-102634:1:exon

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M200
so part of: sequence
location: 102654..102676
location: region:102654-102676:1
so has part: feature:102654-102676:1:region

position:102654:1
position: 102654
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:102676:1
position: 102676
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:102654-102676:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M18
so part of: sequence
location: complement(105058..105072)
location: region:105058-105072:-1
so has part: feature:105058-105072:-1:region

position:105058:-1
position: 105058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:105072:-1
position: 105072
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:105058-105072:-1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M199
so part of: sequence
location: 105931..105953
location: region:105931-105953:1
so has part: feature:105931-105953:1:region

position:105931:1
position: 105931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:105953:1
position: 105953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:105931-105953:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M124
so part of: sequence
location: 106242..106265
location: region:106242-106265:1
so has part: feature:106242-106265:1:region

position:106242:1
position: 106242
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:106265:1
position: 106265
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:106242-106265:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M17
so part of: sequence
location: complement(106351..106374)
location: region:106351-106374:-1
so has part: feature:106351-106374:-1:region

position:106351:-1
position: 106351
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:106374:-1
position: 106374
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:106351-106374:-1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M16
so part of: sequence
location: complement(109410..109425)
location: region:109410-109425:-1
so has part: feature:109410-109425:-1:region

position:109410:-1
position: 109410
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:109425:-1
position: 109425
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:109410-109425:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: N-1
rpt type: inverted
so part of: sequence
location: 110303..110596
location: region:110303-110596:1
so has part: feature:110303-110596:1:region

position:110303:1
position: 110303
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:110596:1
position: 110596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:110303-110596:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M123
so part of: sequence
location: 111387..111402
location: region:111387-111402:1
so has part: feature:111387-111402:1:region

position:111387:1
position: 111387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:111402:1
position: 111402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:111387-111402:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF145C
so part of: sequence
location: 111689..112126
location: region:111689-112126:1
so has part: feature:111689-112126:1:region

position:111689:1
position: 111689
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:112126:1
position: 112126
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:111689-112126:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: DD-1
rpt type: inverted
so part of: sequence
location: 113664..113791
location: region:113664-113791:1
so has part: feature:113664-113791:1:region

position:113664:1
position: 113664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:113791:1
position: 113791
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:113664-113791:1:region

3'UTR
type: Three Prime UTR
subclass of: SO_0000205
RO_0002162: 3702
note: cox1
so part of: sequence
location: complement(114715..114761)
location: region:114715-114761:-1
so has part: feature:114715-114761:-1:region

position:114715:-1
position: 114715
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:114761:-1
position: 114761
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:114715-114761:-1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M84
so part of: sequence
location: complement(114715..114759)
location: region:114715-114759:-1
so has part: feature:114715-114759:-1:region

position:114759:-1
position: 114759
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:114715-114759:-1:region

DA397_mgp30
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
gene: cox1
locus tag: DA397_mgp30
so part of: sequence
location: complement(114762..116345)
location: region:114762-116345:-1
so has part: feature:114762-116345:-1:exon
subclass of: SO_0000010
subclass of: SO_0000011

36335686
type: Gene
SIO_000068: ncbigene

position:114762:-1
position: 114762
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:116345:-1
position: 116345
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:114762-116345:-1:exon

DA397_mgp30
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3702
gene: cox1
locus tag: DA397_mgp30
codon start: 1
product: cytochrome c oxidase subunit 1
translation: MKNLVRWLFSTNHKDIGTLYFIFGAIAGVMGTCFSVLIRMELARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPAMIGGFGNWFVPILIGAPDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLSGITSHSGGAVDLAIFSLHLSGVSSILGSINFITTIFNMRGPGMTMHRLPLFVWSVLVTAFLLLLSLPVLAGAITMLLTDRNFNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHIVSTFSGKPVFGYLGMVYAMISIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKIFSWIATMWGGSIQYKTPMLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTYYVVAHFHYVLSMGAVFALFAGFYYWVGKIFGRTYPETLGQIHFWITFFGVNLTFFPMHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGICCFFVVVTITLSSGNNKRCAPSPWALELNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
SIO_010081: DA397_mgp30
subclass of: SO_0000673
so part of: DA397_mgp30
location: complement(114762..116345)
location: region:114762-116345:-1
so has part: feature:114762-116345:-1:exon

YP_009472108.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:114762-116345:-1:exon

DA397_mgp30
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
gene: cox1
locus tag: DA397_mgp30
note: cosRNA M15
SIO_010081: DA397_mgp30
subclass of: SO_0000673
so part of: DA397_mgp30
location: complement(116016..116032)
location: region:116016-116032:-1
so has part: feature:116016-116032:-1:exon

position:116016:-1
position: 116016
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:116032:-1
position: 116032
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:116016-116032:-1:exon

5'UTR
type: Five Prime UTR
subclass of: SO_0000204
RO_0002162: 3702
note: cox1
so part of: sequence
location: complement(116346..116586)
location: region:116346-116586:-1
so has part: feature:116346-116586:-1:region

position:116346:-1
position: 116346
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:116586:-1
position: 116586
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:116346-116586:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: cox1; t-element (tRNA-like structure)
so part of: sequence
location: complement(116588..116660)
location: region:116588-116660:-1
so has part: feature:116588-116660:-1:region

position:116588:-1
position: 116588
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:116660:-1
position: 116660
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:116588-116660:-1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M122
so part of: sequence
location: 119107..119130
location: region:119107-119130:1
so has part: feature:119107-119130:1:region

position:119107:1
position: 119107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:119130:1
position: 119130
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:119107-119130:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M14
so part of: sequence
location: complement(120392..120415)
location: region:120392-120415:-1
so has part: feature:120392-120415:-1:region

position:120392:-1
position: 120392
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:120415:-1
position: 120415
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:120392-120415:-1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M83
so part of: sequence
location: complement(124182..124217)
location: region:124182-124217:-1
so has part: feature:124182-124217:-1:region

position:124182:-1
position: 124182
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:124217:-1
position: 124217
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:124182-124217:-1:region

DA397_mgt10
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
gene: trnH(GTG)
locus tag: DA397_mgt10
note: anticodon:GTG; chloroplast-like
so part of: sequence
location: complement(124603..124676)
location: region:124603-124676:-1
so has part: feature:124603-124676:-1:exon
subclass of: SO_0000663

36335651
type: Gene
SIO_000068: ncbigene

position:124603:-1
position: 124603
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:124676:-1
position: 124676
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:124603-124676:-1:exon

DA397_mgt10
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3702
gene: trnH(GTG)
locus tag: DA397_mgt10
product: tRNA-His
SIO_010081: DA397_mgt10
subclass of: SO_0000673
so part of: DA397_mgt10
location: complement(124603..124676)
location: region:124603-124676:-1
so has part: feature:124603-124676:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:124603-124676:-1:exon

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M13
so part of: sequence
location: complement(124658..124677)
location: region:124658-124677:-1
so has part: feature:124658-124677:-1:region

position:124658:-1
position: 124658
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:124677:-1
position: 124677
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:124658-124677:-1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M12
so part of: sequence
location: complement(124810..124831)
location: region:124810-124831:-1
so has part: feature:124810-124831:-1:region

position:124810:-1
position: 124810
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:124831:-1
position: 124831
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:124810-124831:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF111D
so part of: sequence
location: complement(125656..125991)
location: region:125656-125991:-1
so has part: feature:125656-125991:-1:region

position:125656:-1
position: 125656
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:125991:-1
position: 125991
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:125656-125991:-1:region

DA397_mgr03
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
gene: rrn5
locus tag: DA397_mgr03
so part of: sequence
location: complement(126001..126118)
location: region:126001-126118:-1
so has part: feature:126001-126118:-1:exon
subclass of: SO_0000573
subclass of: SO_0000011

36335687
type: Gene
SIO_000068: ncbigene

position:126001:-1
position: 126001
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:126118:-1
position: 126118
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:126001-126118:-1:exon

DA397_mgr03
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 3702
gene: rrn5
locus tag: DA397_mgr03
product: 5S ribosomal RNA
SIO_010081: DA397_mgr03
subclass of: SO_0000673
so part of: DA397_mgr03
location: complement(126001..126118)
location: region:126001-126118:-1
so has part: feature:126001-126118:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:126001-126118:-1:exon

DA397_mgr03
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
gene: rrn5
locus tag: DA397_mgr03
note: cosRNA M82
SIO_010081: DA397_mgr03
subclass of: SO_0000673
so part of: DA397_mgr03
location: complement(126001..126041)
location: region:126001-126041:-1
so has part: feature:126001-126041:-1:exon

position:126041:-1
position: 126041
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:126001-126041:-1:exon

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M11
so part of: sequence
location: complement(126094..126119)
location: region:126094-126119:-1
so has part: feature:126094-126119:-1:region

position:126094:-1
position: 126094
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:126119:-1
position: 126119
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:126094-126119:-1:region

DA397_mgr02
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
gene: rrn18
locus tag: DA397_mgr02
so part of: sequence
location: complement(126289..128223)
location: region:126289-128223:-1
so has part: feature:126289-128223:-1:exon
subclass of: SO_0000573
subclass of: SO_0000011

36335650
type: Gene
SIO_000068: ncbigene

position:126289:-1
position: 126289
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:128223:-1
position: 128223
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:126289-128223:-1:exon

DA397_mgr02
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 3702
gene: rrn18
locus tag: DA397_mgr02
product: 18S ribosomal RNA
SIO_010081: DA397_mgr02
subclass of: SO_0000673
so part of: DA397_mgr02
location: complement(126289..128223)
location: region:126289-128223:-1
so has part: feature:126289-128223:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:126289-128223:-1:exon

DA397_mgr02
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
gene: rrn18
locus tag: DA397_mgr02
note: cosRNA M81
SIO_010081: DA397_mgr02
subclass of: SO_0000673
so part of: DA397_mgr02
location: complement(126289..126334)
location: region:126289-126334:-1
so has part: feature:126289-126334:-1:exon

position:126334:-1
position: 126334
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:126289-126334:-1:exon

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M198
so part of: sequence
location: 128003..128026
location: region:128003-128026:1
so has part: feature:128003-128026:1:region

position:128003:1
position: 128003
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:128026:1
position: 128026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:128003-128026:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: KK-1
so part of: sequence
location: 128290..128402
location: region:128290-128402:1
so has part: feature:128290-128402:1:region

position:128290:1
position: 128290
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:128402:1
position: 128402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:128290-128402:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: chloroplast origin
so part of: sequence
location: 129619..130128
location: region:129619-130128:1
so has part: feature:129619-130128:1:region

position:129619:1
position: 129619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:130128:1
position: 130128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:129619-130128:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF204
so part of: sequence
location: complement(131026..131641)
location: region:131026-131641:-1
so has part: feature:131026-131641:-1:region

position:131026:-1
position: 131026
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:131641:-1
position: 131641
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:131026-131641:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF153A
so part of: sequence
location: complement(132138..132599)
location: region:132138-132599:-1
so has part: feature:132138-132599:-1:region

position:132138:-1
position: 132138
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:132599:-1
position: 132599
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:132138-132599:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: MM-1
rpt type: direct
so part of: sequence
location: 134500..134580
location: region:134500-134580:1
so has part: feature:134500-134580:1:region

position:134500:1
position: 134500
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:134580:1
position: 134580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:134500-134580:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: J-1
rpt type: direct
so part of: sequence
location: 134636..134920
location: region:134636-134920:1
so has part: feature:134636-134920:1:region

position:134636:1
position: 134636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:134920:1
position: 134920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:134636-134920:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: S-1
rpt type: direct
so part of: sequence
location: 134964..135193
location: region:134964-135193:1
so has part: feature:134964-135193:1:region

position:134964:1
position: 134964
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:135193:1
position: 135193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:134964-135193:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: P-1
rpt type: direct
so part of: sequence
location: 138910..139374
location: region:138910-139374:1
so has part: feature:138910-139374:1:region

position:138910:1
position: 138910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:139374:1
position: 139374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:138910-139374:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M80
so part of: sequence
location: complement(140759..140798)
location: region:140759-140798:-1
so has part: feature:140759-140798:-1:region

position:140759:-1
position: 140759
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:140798:-1
position: 140798
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:140759-140798:-1:region

DA397_mgr01
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
gene: rrn26
locus tag: DA397_mgr01
so part of: sequence
location: complement(140797..143965)
location: region:140797-143965:-1
so has part: feature:140797-143965:-1:exon
subclass of: SO_0000573
subclass of: SO_0000011

36335649
type: Gene
SIO_000068: ncbigene

position:140797:-1
position: 140797
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:143965:-1
position: 143965
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:140797-143965:-1:exon

DA397_mgr01
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 3702
gene: rrn26
locus tag: DA397_mgr01
product: 26S ribosomal RNA
SIO_010081: DA397_mgr01
subclass of: SO_0000673
so part of: DA397_mgr01
location: complement(140797..143965)
location: region:140797-143965:-1
so has part: feature:140797-143965:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:140797-143965:-1:exon

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M120
so part of: sequence
location: 141141..141164
location: region:141141-141164:1
so has part: feature:141141-141164:1:region

position:141141:1
position: 141141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:141164:1
position: 141164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:141141-141164:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M197
so part of: sequence
location: 142265..142286
location: region:142265-142286:1
so has part: feature:142265-142286:1:region

position:142265:1
position: 142265
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:142286:1
position: 142286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:142265-142286:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF107A
so part of: sequence
location: 143781..144104
location: region:143781-144104:1
so has part: feature:143781-144104:1:region

position:143781:1
position: 143781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:144104:1
position: 144104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:143781-144104:1:region

DA397_mgr01
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
gene: rrn26
locus tag: DA397_mgr01
note: cosRNA M10
SIO_010081: DA397_mgr01
subclass of: SO_0000673
so part of: DA397_mgr01
location: complement(143933..143950)
location: region:143933-143950:-1
so has part: feature:143933-143950:-1:exon

position:143933:-1
position: 143933
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:143950:-1
position: 143950
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:143933-143950:-1:exon

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: C-1
rpt type: inverted
so part of: sequence
location: 143953..144409
location: region:143953-144409:1
so has part: feature:143953-144409:1:region

position:143953:1
position: 143953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:144409:1
position: 144409
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:143953-144409:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M9
so part of: sequence
location: complement(143978..144009)
location: region:143978-144009:-1
so has part: feature:143978-144009:-1:region

position:143978:-1
position: 143978
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:144009:-1
position: 144009
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:143978-144009:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: LL-2
so part of: sequence
location: 144008..144115
location: region:144008-144115:1
so has part: feature:144008-144115:1:region

position:144008:1
position: 144008
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:144115:1
position: 144115
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:144008-144115:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M8
so part of: sequence
location: complement(144058..144088)
location: region:144058-144088:-1
so has part: feature:144058-144088:-1:region

position:144058:-1
position: 144058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:144088:-1
position: 144088
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:144058-144088:-1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M7
so part of: sequence
location: complement(144140..144171)
location: region:144140-144171:-1
so has part: feature:144140-144171:-1:region

position:144140:-1
position: 144140
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:144171:-1
position: 144171
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:144140-144171:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: BB-3
so part of: sequence
location: 144152..144298
location: region:144152-144298:1
so has part: feature:144152-144298:1:region

position:144152:1
position: 144152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:144298:1
position: 144298
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:144152-144298:1:region

DA397_mgt11
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
gene: trnfM(CAT)
locus tag: DA397_mgt11
note: anticodon:CAT; copy 1
so part of: sequence
location: 149673..149743
location: region:149673-149743:1
so has part: feature:149673-149743:1:exon
subclass of: SO_0000663

36335648
type: Gene
SIO_000068: ncbigene

position:149673:1
position: 149673
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:149743:1
position: 149743
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:149673-149743:1:exon

DA397_mgt11
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3702
gene: trnfM(CAT)
locus tag: DA397_mgt11
product: tRNA-Met
note: tRNA-Met-f
SIO_010081: DA397_mgt11
subclass of: SO_0000673
so part of: DA397_mgt11
location: 149673..149743
location: region:149673-149743:1
so has part: feature:149673-149743:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:149673-149743:1:exon

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M153
so part of: sequence
location: complement(150625..150653)
location: region:150625-150653:-1
so has part: feature:150625-150653:-1:region

position:150625:-1
position: 150625
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:150653:-1
position: 150653
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:150625-150653:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF127
so part of: sequence
location: complement(151709..152092)
location: region:151709-152092:-1
so has part: feature:151709-152092:-1:region

position:151709:-1
position: 151709
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:152092:-1
position: 152092
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:151709-152092:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF154
so part of: sequence
location: 151746..152210
location: region:151746-152210:1
so has part: feature:151746-152210:1:region

position:151746:1
position: 151746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:152210:1
position: 152210
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:151746-152210:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF145A
so part of: sequence
location: 153039..153476
location: region:153039-153476:1
so has part: feature:153039-153476:1:region

position:153039:1
position: 153039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:153476:1
position: 153476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:153039-153476:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: rps4; t-element (tRNA-like structure)
so part of: sequence
location: 159855..159978
location: region:159855-159978:1
so has part: feature:159855-159978:1:region

position:159855:1
position: 159855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:159978:1
position: 159978
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:159855-159978:1:region

DA397_mgp29
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
gene: rps4
locus tag: DA397_mgp29
so part of: sequence
location: 159980..161068
location: region:159980-161068:1
so has part: feature:159980-161068:1:exon
subclass of: SO_0000010
subclass of: SO_0000011

36335688
type: Gene
SIO_000068: ncbigene

position:159980:1
position: 159980
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:161068:1
position: 161068
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:159980-161068:1:exon

DA397_mgp29
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3702
gene: rps4
locus tag: DA397_mgp29
exception: RNA editing
codon start: 1
product: ribosomal protein S4
translation: MWLLKKLIQRDIDLSPLRFQTCRLLLGNVWNRELTIIQRRILRRLRNRKRSIKKRKIYSKKYLTSYIQLQTTRKLSLFYGDLPITEMHRGTKRTSYIPFLLNLETRFDVILLRLHFLETIPQARQLISHRRVCVNKGMVSITHFKLSHGDIISFQENNAIIRGEEIRRSFYKEILVEKIIGKLLHQPLRMWRRSKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKVCLGSSFAEHKRMKRNLLKSLFLSKRRKDKNLNLPTRTISPIVYNSSLSLYSNSTYCFASPHKLTMKRRIKRIELPTHYLEVNYRTPKAVVFYGPNIGHIPHDIRLKDLNLLLWSRNGRGQNI
SIO_010081: DA397_mgp29
subclass of: SO_0000673
so part of: DA397_mgp29
location: 159980..161068
location: region:159980-161068:1
so has part: feature:159980-161068:1:exon

YP_009472109.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:159980-161068:1:exon

DA397_mgp29
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
gene: rps4
locus tag: DA397_mgp29
note: cosRNA M28
SIO_010081: DA397_mgp29
subclass of: SO_0000673
so part of: DA397_mgp29
location: 159981..160012
location: region:159981-160012:1
so has part: feature:159981-160012:1:exon

position:159981:1
position: 159981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:160012:1
position: 160012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:159981-160012:1:exon

DA397_mgp29
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rps4
locus tag: DA397_mgp29
note: rps4; C to U RNA editing; TCA(S) to TTA(L)
SIO_010081: DA397_mgp29
subclass of: SO_0000673
so part of: DA397_mgp29
location: 160056
location: region:160056-160056:1
so has part: feature:160056-160056:1:exon

position:160056:1
position: 160056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:160056-160056:1:exon

DA397_mgp29
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rps4
locus tag: DA397_mgp29
note: rps4; C to U RNA editing; CGG(R) to TGG(W)
SIO_010081: DA397_mgp29
subclass of: SO_0000673
so part of: DA397_mgp29
location: 160067
location: region:160067-160067:1
so has part: feature:160067-160067:1:exon

position:160067:1
position: 160067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:160067-160067:1:exon

DA397_mgp29
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rps4
locus tag: DA397_mgp29
note: rps4; C to U RNA editing; CCG(P) to TCG(S)
SIO_010081: DA397_mgp29
subclass of: SO_0000673
so part of: DA397_mgp29
location: 160154
location: region:160154-160154:1
so has part: feature:160154-160154:1:exon

position:160154:1
position: 160154
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:160154-160154:1:exon

DA397_mgp29
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rps4
locus tag: DA397_mgp29
note: rps4; C to U RNA editing; CCC(P) to TCC(S)
SIO_010081: DA397_mgp29
subclass of: SO_0000673
so part of: DA397_mgp29
location: 160205
location: region:160205-160205:1
so has part: feature:160205-160205:1:exon

position:160205:1
position: 160205
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:160205-160205:1:exon

DA397_mgp29
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rps4
locus tag: DA397_mgp29
note: rps4; C to U RNA editing; CAT(H) to TAT(Y)
SIO_010081: DA397_mgp29
subclass of: SO_0000673
so part of: DA397_mgp29
location: 160214
location: region:160214-160214:1
so has part: feature:160214-160214:1:exon

position:160214:1
position: 160214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:160214-160214:1:exon

DA397_mgp29
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rps4
locus tag: DA397_mgp29
note: rps4; C to U RNA editing; CCA(P) to CTA(L)
SIO_010081: DA397_mgp29
subclass of: SO_0000673
so part of: DA397_mgp29
location: 160278
location: region:160278-160278:1
so has part: feature:160278-160278:1:exon

position:160278:1
position: 160278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:160278-160278:1:exon

DA397_mgp29
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rps4
locus tag: DA397_mgp29
note: rps4; C to U RNA editing; CCA(P) to CTA(L)
SIO_010081: DA397_mgp29
subclass of: SO_0000673
so part of: DA397_mgp29
location: 160287
location: region:160287-160287:1
so has part: feature:160287-160287:1:exon

position:160287:1
position: 160287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:160287-160287:1:exon

DA397_mgp29
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rps4
locus tag: DA397_mgp29
note: rps4; C to U RNA editing; CCG(P) to CTG(L)
SIO_010081: DA397_mgp29
subclass of: SO_0000673
so part of: DA397_mgp29
location: 160311
location: region:160311-160311:1
so has part: feature:160311-160311:1:exon

position:160311:1
position: 160311
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:160311-160311:1:exon

DA397_mgp29
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rps4
locus tag: DA397_mgp29
note: rps4; C to U RNA editing (minor frequency); CTC(L) to TTC(F)
SIO_010081: DA397_mgp29
subclass of: SO_0000673
so part of: DA397_mgp29
location: 160319
location: region:160319-160319:1
so has part: feature:160319-160319:1:exon

position:160319:1
position: 160319
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:160319-160319:1:exon

DA397_mgp29
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rps4
locus tag: DA397_mgp29
note: rps4; C to U RNA editing; CCG(P) to CTG(L)
SIO_010081: DA397_mgp29
subclass of: SO_0000673
so part of: DA397_mgp29
location: 160356
location: region:160356-160356:1
so has part: feature:160356-160356:1:exon

position:160356:1
position: 160356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:160356-160356:1:exon

DA397_mgp29
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rps4
locus tag: DA397_mgp29
note: rps4; C to U RNA editing (minor frequency); synonymous
SIO_010081: DA397_mgp29
subclass of: SO_0000673
so part of: DA397_mgp29
location: 160420
location: region:160420-160420:1
so has part: feature:160420-160420:1:exon

position:160420:1
position: 160420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:160420-160420:1:exon

DA397_mgp29
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rps4
locus tag: DA397_mgp29
note: rps4; C to U RNA editing; TCA(S) to TTA(L)
SIO_010081: DA397_mgp29
subclass of: SO_0000673
so part of: DA397_mgp29
location: 160503
location: region:160503-160503:1
so has part: feature:160503-160503:1:exon

position:160503:1
position: 160503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:160503-160503:1:exon

DA397_mgp29
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rps4
locus tag: DA397_mgp29
note: rps4; C to U RNA editing (minor frequency); synonymous
SIO_010081: DA397_mgp29
subclass of: SO_0000673
so part of: DA397_mgp29
location: 160690
location: region:160690-160690:1
so has part: feature:160690-160690:1:exon

position:160690:1
position: 160690
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:160690-160690:1:exon

DA397_mgp29
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rps4
locus tag: DA397_mgp29
note: rps4; C to U RNA editing (minor frequency); synonymous
SIO_010081: DA397_mgp29
subclass of: SO_0000673
so part of: DA397_mgp29
location: 160717
location: region:160717-160717:1
so has part: feature:160717-160717:1:exon

position:160717:1
position: 160717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:160717-160717:1:exon

DA397_mgp29
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rps4
locus tag: DA397_mgp29
note: rps4; C to U RNA editing (minor frequency); synonymous
SIO_010081: DA397_mgp29
subclass of: SO_0000673
so part of: DA397_mgp29
location: 160861
location: region:160861-160861:1
so has part: feature:160861-160861:1:exon

position:160861:1
position: 160861
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:160861-160861:1:exon

DA397_mgp29
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rps4
locus tag: DA397_mgp29
note: rps4; C to U RNA editing (minor frequency); synonymous
SIO_010081: DA397_mgp29
subclass of: SO_0000673
so part of: DA397_mgp29
location: 160915
location: region:160915-160915:1
so has part: feature:160915-160915:1:exon

position:160915:1
position: 160915
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:160915-160915:1:exon

DA397_mgp29
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rps4
locus tag: DA397_mgp29
note: rps4; C to U RNA editing; TCG(S) to TTG(L)
SIO_010081: DA397_mgp29
subclass of: SO_0000673
so part of: DA397_mgp29
location: 160935
location: region:160935-160935:1
so has part: feature:160935-160935:1:exon

position:160935:1
position: 160935
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:160935-160935:1:exon

DA397_mgp29
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rps4
locus tag: DA397_mgp29
note: rps4; C to U RNA editing; CAT(H) to TAT(Y)
SIO_010081: DA397_mgp29
subclass of: SO_0000673
so part of: DA397_mgp29
location: 160946
location: region:160946-160946:1
so has part: feature:160946-160946:1:exon

position:160946:1
position: 160946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:160946-160946:1:exon

DA397_mgp29
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rps4
locus tag: DA397_mgp29
note: rps4; C to U RNA editing; TCT(S) to TTT(F)
SIO_010081: DA397_mgp29
subclass of: SO_0000673
so part of: DA397_mgp29
location: 160971
location: region:160971-160971:1
so has part: feature:160971-160971:1:exon

position:160971:1
position: 160971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:160971-160971:1:exon

DA397_mgp29
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rps4
locus tag: DA397_mgp29
note: rps4; C to U RNA editing; CCA(P) to TTA(L)
SIO_010081: DA397_mgp29
subclass of: SO_0000673
so part of: DA397_mgp29
location: 161021
location: region:161021-161021:1
so has part: feature:161021-161021:1:exon

position:161021:1
position: 161021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:161021-161021:1:exon

DA397_mgp29
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rps4
locus tag: DA397_mgp29
note: rps4; C to U RNA editing; CCA(P) to CTA(L)
SIO_010081: DA397_mgp29
subclass of: SO_0000673
so part of: DA397_mgp29
location: 161022
location: region:161022-161022:1
so has part: feature:161022-161022:1:exon

position:161022:1
position: 161022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:161022-161022:1:exon

DA397_mgp29
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rps4
locus tag: DA397_mgp29
note: rps4; C to U RNA editing; CCT(P) to CTT(L)
SIO_010081: DA397_mgp29
subclass of: SO_0000673
so part of: DA397_mgp29
location: 161031
location: region:161031-161031:1
so has part: feature:161031-161031:1:exon

position:161031:1
position: 161031
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:161031-161031:1:exon

DA397_mgp29
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: rps4
locus tag: DA397_mgp29
note: rps4; C to U RNA editing; CGG(R) to TGG(W)
SIO_010081: DA397_mgp29
subclass of: SO_0000673
so part of: DA397_mgp29
location: 161036
location: region:161036-161036:1
so has part: feature:161036-161036:1:exon

position:161036:1
position: 161036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:161036-161036:1:exon

3'UTR
type: Three Prime UTR
subclass of: SO_0000205
RO_0002162: 3702
note: rps4
so part of: sequence
location: 161069..161566
location: region:161069-161566:1
so has part: feature:161069-161566:1:region

position:161069:1
position: 161069
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:161566:1
position: 161566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:161069-161566:1:region

5'UTR
type: Five Prime UTR
subclass of: SO_0000204
RO_0002162: 3702
note: nad2
so part of: sequence
location: 161677..161831
location: region:161677-161831:1
so has part: feature:161677-161831:1:region

position:161677:1
position: 161677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:161831:1
position: 161831
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:161677-161831:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M3
so part of: sequence
location: complement(161696..161710)
location: region:161696-161710:-1
so has part: feature:161696-161710:-1:region

position:161696:-1
position: 161696
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:161710:-1
position: 161710
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:161696-161710:-1:region

DA397_mgp31
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad2
locus tag: DA397_mgp31
note: nad2; C to U RNA editing; TCC(S) to TTC(F)
SIO_010081: DA397_mgp31
subclass of: SO_0000673
so part of: DA397_mgp31
location: 161857
location: region:161857-161857:1
so has part: feature:161857-161857:1:exon

position:161857:1
position: 161857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:161857-161857:1:exon

DA397_mgp31
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad2
locus tag: DA397_mgp31
note: nad2; C to U RNA editing; TCC(S) to TTC(F)
SIO_010081: DA397_mgp31
subclass of: SO_0000673
so part of: DA397_mgp31
location: 161887
location: region:161887-161887:1
so has part: feature:161887-161887:1:exon

position:161887:1
position: 161887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:161887-161887:1:exon

DA397_mgp31
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad2
locus tag: DA397_mgp31
note: nad2; C to U RNA editing; synonymous
SIO_010081: DA397_mgp31
subclass of: SO_0000673
so part of: DA397_mgp31
location: 161888
location: region:161888-161888:1
so has part: feature:161888-161888:1:exon

position:161888:1
position: 161888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:161888-161888:1:exon

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M29
so part of: sequence
location: 162170..162193
location: region:162170-162193:1
so has part: feature:162170-162193:1:region

position:162170:1
position: 162170
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:162193:1
position: 162193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:162170-162193:1:region

DA397_mgp31
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad2
locus tag: DA397_mgp31
note: nad2; C to U RNA editing (minor frequency); synonymous
SIO_010081: DA397_mgp31
subclass of: SO_0000673
so part of: DA397_mgp31
location: 163064
location: region:163064-163064:1
so has part: feature:163064-163064:1:exon

position:163064:1
position: 163064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:163064-163064:1:exon

DA397_mgp31
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad2
locus tag: DA397_mgp31
note: nad2; C to U RNA editing (minor frequency); synonymous
SIO_010081: DA397_mgp31
subclass of: SO_0000673
so part of: DA397_mgp31
location: 163115
location: region:163115-163115:1
so has part: feature:163115-163115:1:exon

position:163115:1
position: 163115
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:163115-163115:1:exon

DA397_mgp31
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad2
locus tag: DA397_mgp31
note: nad2; C to U RNA editing; TCT(S) to TTT(F)
SIO_010081: DA397_mgp31
subclass of: SO_0000673
so part of: DA397_mgp31
location: 163120
location: region:163120-163120:1
so has part: feature:163120-163120:1:exon

position:163120:1
position: 163120
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:163120-163120:1:exon

DA397_mgp31
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad2
locus tag: DA397_mgp31
note: nad2; C to U RNA editing; TCC(S) to TTC(F)
SIO_010081: DA397_mgp31
subclass of: SO_0000673
so part of: DA397_mgp31
location: 163123
location: region:163123-163123:1
so has part: feature:163123-163123:1:exon

position:163123:1
position: 163123
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:163123-163123:1:exon

DA397_mgp31
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad2
locus tag: DA397_mgp31
note: nad2; C to U RNA editing (minor frequency); synonymous
SIO_010081: DA397_mgp31
subclass of: SO_0000673
so part of: DA397_mgp31
location: 163124
location: region:163124-163124:1
so has part: feature:163124-163124:1:exon

position:163124:1
position: 163124
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:163124-163124:1:exon

DA397_mgp31
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad2
locus tag: DA397_mgp31
note: nad2; C to U RNA editing; CCA(P) to CTA(L)
SIO_010081: DA397_mgp31
subclass of: SO_0000673
so part of: DA397_mgp31
location: 163168
location: region:163168-163168:1
so has part: feature:163168-163168:1:exon

position:163168:1
position: 163168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:163168-163168:1:exon

DA397_mgp31
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad2
locus tag: DA397_mgp31
note: nad2; C to U RNA editing; CCT(P) to TCT(S)
SIO_010081: DA397_mgp31
subclass of: SO_0000673
so part of: DA397_mgp31
location: 163173
location: region:163173-163173:1
so has part: feature:163173-163173:1:exon

position:163173:1
position: 163173
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:163173-163173:1:exon

DA397_mgp31
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad2
locus tag: DA397_mgp31
note: nad2; C to U RNA editing; CGC(R) to TGC(C)
SIO_010081: DA397_mgp31
subclass of: SO_0000673
so part of: DA397_mgp31
location: 163179
location: region:163179-163179:1
so has part: feature:163179-163179:1:exon

position:163179:1
position: 163179
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:163179-163179:1:exon

DA397_mgp31
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad2
locus tag: DA397_mgp31
note: nad2; C to U RNA editing; CAT(H) to TAT(Y)
SIO_010081: DA397_mgp31
subclass of: SO_0000673
so part of: DA397_mgp31
location: 163206
location: region:163206-163206:1
so has part: feature:163206-163206:1:exon

position:163206:1
position: 163206
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:163206-163206:1:exon

DA397_mgp31
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad2
locus tag: DA397_mgp31
note: nad2; C to U RNA editing; CCT(P) to CTT(L)
SIO_010081: DA397_mgp31
subclass of: SO_0000673
so part of: DA397_mgp31
location: 163240
location: region:163240-163240:1
so has part: feature:163240-163240:1:exon

position:163240:1
position: 163240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:163240-163240:1:exon

DA397_mgp31
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad2
locus tag: DA397_mgp31
note: nad2; C to U RNA editing (minor frequency); synonymous
SIO_010081: DA397_mgp31
subclass of: SO_0000673
so part of: DA397_mgp31
location: 163265
location: region:163265-163265:1
so has part: feature:163265-163265:1:exon

position:163265:1
position: 163265
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:163265-163265:1:exon

DA397_mgp31
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad2
locus tag: DA397_mgp31
note: nad2; C to U RNA editing (minor frequency); synonymous
SIO_010081: DA397_mgp31
subclass of: SO_0000673
so part of: DA397_mgp31
location: 163295
location: region:163295-163295:1
so has part: feature:163295-163295:1:exon

position:163295:1
position: 163295
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:163295-163295:1:exon

DA397_mgp31
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad2
locus tag: DA397_mgp31
note: nad2; C to U RNA editing; TCG(S) to TTG(L)
SIO_010081: DA397_mgp31
subclass of: SO_0000673
so part of: DA397_mgp31
location: 163309
location: region:163309-163309:1
so has part: feature:163309-163309:1:exon

position:163309:1
position: 163309
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:163309-163309:1:exon

DA397_mgp31
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad2
locus tag: DA397_mgp31
note: nad2; C to U RNA editing (minor frequency); synonymous
SIO_010081: DA397_mgp31
subclass of: SO_0000673
so part of: DA397_mgp31
location: 163337
location: region:163337-163337:1
so has part: feature:163337-163337:1:exon

position:163337:1
position: 163337
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:163337-163337:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF110A
so part of: sequence
location: 164947..165278
location: region:164947-165278:1
so has part: feature:164947-165278:1:region

position:164947:1
position: 164947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:165278:1
position: 165278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:164947-165278:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: chloroplast origin
so part of: sequence
location: 164985..165552
location: region:164985-165552:1
so has part: feature:164985-165552:1:region

position:164985:1
position: 164985
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:165552:1
position: 165552
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:164985-165552:1:region

5'UTR
type: Five Prime UTR
subclass of: SO_0000204
RO_0002162: 3702
note: nad6
so part of: sequence
location: 165659..165837
location: region:165659-165837:1
so has part: feature:165659-165837:1:region

position:165659:1
position: 165659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:165837:1
position: 165837
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:165659-165837:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M30
so part of: sequence
location: 165659..165699
location: region:165659-165699:1
so has part: feature:165659-165699:1:region

position:165699:1
position: 165699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:165659-165699:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: GG-1
rpt type: inverted
so part of: sequence
location: 165832..165932
location: region:165832-165932:1
so has part: feature:165832-165932:1:region

position:165832:1
position: 165832
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:165932:1
position: 165932
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:165832-165932:1:region

DA397_mgp28
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
gene: nad6
locus tag: DA397_mgp28
so part of: sequence
location: 165838..166455
location: region:165838-166455:1
so has part: feature:165838-166455:1:exon
subclass of: SO_0000010
subclass of: SO_0000011

36335654
type: Gene
SIO_000068: ncbigene

position:165838:1
position: 165838
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:166455:1
position: 166455
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:165838-166455:1:exon

DA397_mgp28
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3702
gene: nad6
locus tag: DA397_mgp28
exception: RNA editing
codon start: 1
product: NADH dehydrogenase subunit 6
translation: MILSVLSSLALVSGLMVVRAKNPVHSVLFFILVFCDTSGLLLLLGLDFFAMIFLVVYIGAIAVLFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTTSLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQDVFRRNAIDFRRTIMRRTTDPLTIY
SIO_010081: DA397_mgp28
subclass of: SO_0000673
so part of: DA397_mgp28
location: 165838..166455
location: region:165838-166455:1
so has part: feature:165838-166455:1:exon

YP_009472110.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:165838-166455:1:exon

DA397_mgp28
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad6
locus tag: DA397_mgp28
note: nad6; C to U RNA editing; CCT(P) to CTT(L)
SIO_010081: DA397_mgp28
subclass of: SO_0000673
so part of: DA397_mgp28
location: 165863
location: region:165863-165863:1
so has part: feature:165863-165863:1:exon

position:165863:1
position: 165863
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:165863-165863:1:exon

DA397_mgp28
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad6
locus tag: DA397_mgp28
note: nad6; C to U RNA editing; GCA(A) to GTA(V)
SIO_010081: DA397_mgp28
subclass of: SO_0000673
so part of: DA397_mgp28
location: 165890
location: region:165890-165890:1
so has part: feature:165890-165890:1:exon

position:165890:1
position: 165890
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:165890-165890:1:exon

DA397_mgp28
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad6
locus tag: DA397_mgp28
note: nad6; C to U RNA editing; CCC(P) to TTC(F)
SIO_010081: DA397_mgp28
subclass of: SO_0000673
so part of: DA397_mgp28
location: 165925
location: region:165925-165925:1
so has part: feature:165925-165925:1:exon

position:165925:1
position: 165925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:165925-165925:1:exon

DA397_mgp28
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad6
locus tag: DA397_mgp28
note: nad6; C to U RNA editing; CCC(P) to TTC(F)
SIO_010081: DA397_mgp28
subclass of: SO_0000673
so part of: DA397_mgp28
location: 165926
location: region:165926-165926:1
so has part: feature:165926-165926:1:exon

position:165926:1
position: 165926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:165926-165926:1:exon

DA397_mgp28
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad6
locus tag: DA397_mgp28
note: nad6; C to U RNA editing (minor frequency); synonymous
SIO_010081: DA397_mgp28
subclass of: SO_0000673
so part of: DA397_mgp28
location: 165927
location: region:165927-165927:1
so has part: feature:165927-165927:1:exon

position:165927:1
position: 165927
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:165927-165927:1:exon

DA397_mgp28
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad6
locus tag: DA397_mgp28
note: nad6; C to U RNA editing; CCA(P) to CTA(L)
SIO_010081: DA397_mgp28
subclass of: SO_0000673
so part of: DA397_mgp28
location: 165932
location: region:165932-165932:1
so has part: feature:165932-165932:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:165932-165932:1:exon

DA397_mgp28
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad6
locus tag: DA397_mgp28
note: nad6; C to U RNA editing; CGC(R) to TGC(C)
SIO_010081: DA397_mgp28
subclass of: SO_0000673
so part of: DA397_mgp28
location: 165940
location: region:165940-165940:1
so has part: feature:165940-165940:1:exon

position:165940:1
position: 165940
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:165940-165940:1:exon

DA397_mgp28
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
gene: nad6
locus tag: DA397_mgp28
note: U-1
rpt type: direct
SIO_010081: DA397_mgp28
subclass of: SO_0000673
so part of: DA397_mgp28
location: 165948..166134
location: region:165948-166134:1
so has part: feature:165948-166134:1:exon

position:165948:1
position: 165948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:166134:1
position: 166134
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:165948-166134:1:exon

DA397_mgp28
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad6
locus tag: DA397_mgp28
note: nad6; C to U RNA editing; CCA(P) to CTA(L)
SIO_010081: DA397_mgp28
subclass of: SO_0000673
so part of: DA397_mgp28
location: 165998
location: region:165998-165998:1
so has part: feature:165998-165998:1:exon

position:165998:1
position: 165998
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:165998-165998:1:exon

DA397_mgp28
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad6
locus tag: DA397_mgp28
note: nad6; C to U RNA editing; CAT(H) to TAT(Y)
SIO_010081: DA397_mgp28
subclass of: SO_0000673
so part of: DA397_mgp28
location: 166006
location: region:166006-166006:1
so has part: feature:166006-166006:1:exon

position:166006:1
position: 166006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:166006-166006:1:exon

DA397_mgp28
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad6
locus tag: DA397_mgp28
note: nad6; C to U RNA editing; TCA(S) to TTA(L)
SIO_010081: DA397_mgp28
subclass of: SO_0000673
so part of: DA397_mgp28
location: 166028
location: region:166028-166028:1
so has part: feature:166028-166028:1:exon

position:166028:1
position: 166028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:166028-166028:1:exon

DA397_mgp28
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad6
locus tag: DA397_mgp28
note: nad6; C to U RNA editing (minor frequency); TCT(S) to TTT(F)
SIO_010081: DA397_mgp28
subclass of: SO_0000673
so part of: DA397_mgp28
location: 166199
location: region:166199-166199:1
so has part: feature:166199-166199:1:exon

position:166199:1
position: 166199
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:166199-166199:1:exon

DA397_mgp28
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad6
locus tag: DA397_mgp28
note: nad6; C to U RNA editing; TCT(S) to TTT(F)
SIO_010081: DA397_mgp28
subclass of: SO_0000673
so part of: DA397_mgp28
location: 166283
location: region:166283-166283:1
so has part: feature:166283-166283:1:exon

position:166283:1
position: 166283
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:166283-166283:1:exon

DA397_mgp28
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad6
locus tag: DA397_mgp28
note: nad6; C to U RNA editing; CCT(P) to TCT(S)
SIO_010081: DA397_mgp28
subclass of: SO_0000673
so part of: DA397_mgp28
location: 166300
location: region:166300-166300:1
so has part: feature:166300-166300:1:exon

position:166300:1
position: 166300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:166300-166300:1:exon

DA397_mgp28
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
gene: nad6
locus tag: DA397_mgp28
note: cosRNA M93
SIO_010081: DA397_mgp28
subclass of: SO_0000673
so part of: DA397_mgp28
location: 166414..166439
location: region:166414-166439:1
so has part: feature:166414-166439:1:exon

position:166414:1
position: 166414
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:166439:1
position: 166439
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:166414-166439:1:exon

DA397_mgp28
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad6
locus tag: DA397_mgp28
note: nad6; 3' transcript end occurs prior to first in-frame stop codon
SIO_010081: DA397_mgp28
subclass of: SO_0000673
so part of: DA397_mgp28
location: 166439
location: region:166439-166439:1
so has part: feature:166439-166439:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:166439-166439:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad6; t-element (tRNA-like structure)
so part of: sequence
location: 166441..166494
location: region:166441-166494:1
so has part: feature:166441-166494:1:region

position:166441:1
position: 166441
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:166494:1
position: 166494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:166441-166494:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M31
so part of: sequence
location: 171043..171057
location: region:171043-171057:1
so has part: feature:171043-171057:1:region

position:171043:1
position: 171043
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:171057:1
position: 171057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:171043-171057:1:region

DA397_mgt12
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
gene: trnfM(CAT)
locus tag: DA397_mgt12
note: anticodon:CAT; copy 2
so part of: sequence
location: complement(171570..171643)
location: region:171570-171643:-1
so has part: feature:171570-171643:-1:exon
subclass of: SO_0000663
subclass of: SO_0000011

36335655
type: Gene
SIO_000068: ncbigene

position:171570:-1
position: 171570
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:171643:-1
position: 171643
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:171570-171643:-1:exon

DA397_mgt12
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3702
gene: trnfM(CAT)
locus tag: DA397_mgt12
product: tRNA-Met
note: tRNA-Met-f
SIO_010081: DA397_mgt12
subclass of: SO_0000673
so part of: DA397_mgt12
location: complement(171570..171643)
location: region:171570-171643:-1
so has part: feature:171570-171643:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:171570-171643:-1:exon

DA397_mgt12
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
gene: trnfM(CAT)
locus tag: DA397_mgt12
note: cosRNA M154
SIO_010081: DA397_mgt12
subclass of: SO_0000673
so part of: DA397_mgt12
location: complement(171611..171643)
location: region:171611-171643:-1
so has part: feature:171611-171643:-1:exon

position:171611:-1
position: 171611
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:171611-171643:-1:exon

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: JJ-1
rpt type: direct
so part of: sequence
location: 171686..171800
location: region:171686-171800:1
so has part: feature:171686-171800:1:region

position:171686:1
position: 171686
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:171800:1
position: 171800
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:171686-171800:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M155
so part of: sequence
location: complement(171700..171740)
location: region:171700-171740:-1
so has part: feature:171700-171740:-1:region

position:171700:-1
position: 171700
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:171740:-1
position: 171740
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:171700-171740:-1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M32
so part of: sequence
location: 172458..172474
location: region:172458-172474:1
so has part: feature:172458-172474:1:region

position:172458:1
position: 172458
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:172474:1
position: 172474
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:172458-172474:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: II-2
rpt type: inverted
so part of: sequence
location: 172944..173036
location: region:172944-173036:1
so has part: feature:172944-173036:1:region

position:172944:1
position: 172944
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:173036:1
position: 173036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:172944-173036:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF111A
so part of: sequence
location: 173839..174174
location: region:173839-174174:1
so has part: feature:173839-174174:1:region

position:173839:1
position: 173839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:174174:1
position: 174174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:173839-174174:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M156
so part of: sequence
location: complement(175014..175036)
location: region:175014-175036:-1
so has part: feature:175014-175036:-1:region

position:175014:-1
position: 175014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:175036:-1
position: 175036
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:175014-175036:-1:region

DA397_mgt13
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
gene: trnS(GGA)
locus tag: DA397_mgt13
note: anticodon:GGA; chloroplast-like
so part of: sequence
location: complement(180658..180744)
location: region:180658-180744:-1
so has part: feature:180658-180744:-1:exon
subclass of: SO_0000663
subclass of: SO_0000011

36335689
type: Gene
SIO_000068: ncbigene

position:180658:-1
position: 180658
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:180744:-1
position: 180744
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:180658-180744:-1:exon

DA397_mgt13
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3702
gene: trnS(GGA)
locus tag: DA397_mgt13
product: tRNA-Ser
SIO_010081: DA397_mgt13
subclass of: SO_0000673
so part of: DA397_mgt13
location: complement(180658..180744)
location: region:180658-180744:-1
so has part: feature:180658-180744:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:180658-180744:-1:exon

DA397_mgt13
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
gene: trnS(GGA)
locus tag: DA397_mgt13
note: cosRNA M157
SIO_010081: DA397_mgt13
subclass of: SO_0000673
so part of: DA397_mgt13
location: complement(180729..180744)
location: region:180729-180744:-1
so has part: feature:180729-180744:-1:exon

position:180729:-1
position: 180729
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:180729-180744:-1:exon

3'UTR
type: Three Prime UTR
subclass of: SO_0000205
RO_0002162: 3702
note: cob
so part of: sequence
location: complement(181619..181676)
location: region:181619-181676:-1
so has part: feature:181619-181676:-1:region

position:181619:-1
position: 181619
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:181676:-1
position: 181676
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:181619-181676:-1:region

DA397_mgp27
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
gene: cob
locus tag: DA397_mgp27
so part of: sequence
location: complement(181677..182858)
location: region:181677-182858:-1
so has part: feature:181677-182858:-1:exon
subclass of: SO_0000010

36335690
type: Gene
SIO_000068: ncbigene

position:181677:-1
position: 181677
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:182858:-1
position: 182858
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:181677-182858:-1:exon

DA397_mgp27
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3702
gene: cob
locus tag: DA397_mgp27
exception: RNA editing
codon start: 1
product: apocytochrome b
translation: MTIRNQRFSLLKQPISSTLNQHLVDYPTPSNLSYWWGFGSLAGICLVIQIVTGVFLAMHYTPHVDLAFNSVEHIMRDVEGGWLLRYMHANGASMFFIVVYLHIFRGLYYASYSSPREFVWCLGVVIFLLMIVTAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHYLLPFILVGASLLHLAALHQYGSNNPLGVHSEMDKIAFYPYFYVKDLVGWVAFAIFFSIWIFYAPNVLGHPDNYIPANPMSTPPHIVPEWYFLPIYAILRSIPDKAGGVAAIALVFICLLALPFFKSMYVRSSSFRPIYQGMFWLLLADCLLLGWIGCQPVEAPFVTIGQISSLVFFLFFAITPILGRVGRGIPNSYTDETDHT
SIO_010081: DA397_mgp27
subclass of: SO_0000673
so part of: DA397_mgp27
location: complement(181677..182858)
location: region:181677-182858:-1
so has part: feature:181677-182858:-1:exon

YP_009472111.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:181677-182858:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: cob; C to U RNA editing; CCT(P) to TCT(S)
so part of: sequence
location: 181775
location: region:181775-181775:1
so has part: feature:181775-181775:1:region

position:181775:1
position: 181775
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:181775-181775:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: cob; C to U RNA editing; CAC(H) to TAC(Y)
so part of: sequence
location: 181877
location: region:181877-181877:1
so has part: feature:181877-181877:1:region

position:181877:1
position: 181877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:181877-181877:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: cob; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 181935
location: region:181935-181935:1
so has part: feature:181935-181935:1:region

position:181935:1
position: 181935
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:181935-181935:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: cob; C to U RNA editing; CCA(P) to CTA(L)
so part of: sequence
location: 181951
location: region:181951-181951:1
so has part: feature:181951-181951:1:region

position:181951:1
position: 181951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:181951-181951:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: cob; C to U RNA editing (minor frequency); synonymous due to other edits in codon
so part of: sequence
location: 181952
location: region:181952-181952:1
so has part: feature:181952-181952:1:region

position:181952:1
position: 181952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:181952-181952:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: cob; C to U RNA editing; CAT(H) to TAT(Y)
so part of: sequence
location: 182006
location: region:182006-182006:1
so has part: feature:182006-182006:1:region

position:182006:1
position: 182006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:182006-182006:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: cob; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 182249
location: region:182249-182249:1
so has part: feature:182249-182249:1:region

position:182249:1
position: 182249
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:182249-182249:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: cob; C to U RNA editing; CAT(H) to TAT(Y)
so part of: sequence
location: 182291
location: region:182291-182291:1
so has part: feature:182291-182291:1:region

position:182291:1
position: 182291
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:182291-182291:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: cob; C to U RNA editing (minor frequency); ACC(T) to ATC(I)
so part of: sequence
location: 182362
location: region:182362-182362:1
so has part: feature:182362-182362:1:region

position:182362:1
position: 182362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:182362-182362:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: cob; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 182478
location: region:182478-182478:1
so has part: feature:182478-182478:1:region

position:182478:1
position: 182478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:182478-182478:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: cob; C to U RNA editing; CAT(H) to TAT(Y)
so part of: sequence
location: 182534
location: region:182534-182534:1
so has part: feature:182534-182534:1:region

position:182534:1
position: 182534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:182534-182534:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: cob; C to U RNA editing; CTT(L) to TTT(F)
so part of: sequence
location: 182573
location: region:182573-182573:1
so has part: feature:182573-182573:1:region

position:182573:1
position: 182573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:182573-182573:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: R-1
rpt type: direct
so part of: sequence
location: 182729..182934
location: region:182729-182934:1
so has part: feature:182729-182934:1:region

position:182729:1
position: 182729
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:182934:1
position: 182934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:182729-182934:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: cob; C to U RNA editing; CCG(P) to TCG(S)
so part of: sequence
location: 182741
location: region:182741-182741:1
so has part: feature:182741-182741:1:region

position:182741:1
position: 182741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:182741-182741:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: cob; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 182745
location: region:182745-182745:1
so has part: feature:182745-182745:1:region

position:182745:1
position: 182745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:182745-182745:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M211
so part of: sequence
location: complement(183934..183957)
location: region:183934-183957:-1
so has part: feature:183934-183957:-1:region

position:183934:-1
position: 183934
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:183957:-1
position: 183957
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:183934-183957:-1:region

DA397_mgp26
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
gene: rps14
locus tag: DA397_mgp26
pseudo: true
so part of: sequence
location: complement(184459..184760)
location: region:184459-184760:-1
so has part: feature:184459-184760:-1:exon

36335656
type: Gene
SIO_000068: ncbigene

position:184459:-1
position: 184459
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:184760:-1
position: 184760
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:184459-184760:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: rps14; C to U RNA editing (minor frequency); TCC(S) to TTC(F)
so part of: sequence
location: 184567
location: region:184567-184567:1
so has part: feature:184567-184567:1:region

position:184567:1
position: 184567
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:184567-184567:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: rps14; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 184662
location: region:184662-184662:1
so has part: feature:184662-184662:1:region

position:184662:1
position: 184662
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:184662-184662:1:region

DA397_mgp25
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
gene: rpl5
locus tag: DA397_mgp25
so part of: sequence
location: complement(184762..185319)
location: region:184762-185319:-1
so has part: feature:184762-185319:-1:exon
subclass of: SO_0000010

36335657
type: Gene
SIO_000068: ncbigene

position:184762:-1
position: 184762
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:185319:-1
position: 185319
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:184762-185319:-1:exon

DA397_mgp25
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3702
gene: rpl5
locus tag: DA397_mgp25
exception: RNA editing
codon start: 1
product: ribosomal protein L5
translation: MFPLNFHYEDVLRQDLLLKLNYANVMEVPGLCEIRVVPKAPYNFIIKNGKLAMEIPCGQKFIQTQRGSTGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGMSNFLVRILTVMSLLDFPVEIRKNSIQFSMETEFCEFSPELEDHFEIFEHIRGFNVTIITSANTQDETLLLWSGFLQKDEGETQ
SIO_010081: DA397_mgp25
subclass of: SO_0000673
so part of: DA397_mgp25
location: complement(184762..185319)
location: region:184762-185319:-1
so has part: feature:184762-185319:-1:exon

YP_009472112.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:184762-185319:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: rpl5; C to U RNA editing; CCA(P) to CTA(L)
so part of: sequence
location: 184808
location: region:184808-184808:1
so has part: feature:184808-184808:1:region

position:184808:1
position: 184808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:184808-184808:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: rpl5; C to U RNA editing; TCG(S) to TTG(L)
so part of: sequence
location: 184991
location: region:184991-184991:1
so has part: feature:184991-184991:1:region

position:184991:1
position: 184991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:184991-184991:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: rpl5; C to U RNA editing; TCG(S) to TTG(L)
so part of: sequence
location: 185003
location: region:185003-185003:1
so has part: feature:185003-185003:1:region

position:185003:1
position: 185003
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:185003-185003:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: rpl5; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 185050
location: region:185050-185050:1
so has part: feature:185050-185050:1:region

position:185050:1
position: 185050
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:185050-185050:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: rpl5; C to U RNA editing; CGC(R) to TGC(C)
so part of: sequence
location: 185151
location: region:185151-185151:1
so has part: feature:185151-185151:1:region

position:185151:1
position: 185151
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:185151-185151:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: rpl5; C to U RNA editing (minor frequency); CCC(P) to TCC(S)
so part of: sequence
location: 185199
location: region:185199-185199:1
so has part: feature:185199-185199:1:region

position:185199:1
position: 185199
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:185199-185199:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: rpl5; C to U RNA editing; TCG(S) to TTG(L)
so part of: sequence
location: 185228
location: region:185228-185228:1
so has part: feature:185228-185228:1:region

position:185228:1
position: 185228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:185228-185228:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: rpl5; C to U RNA editing; CAC(H) to TAC(Y)
so part of: sequence
location: 185256
location: region:185256-185256:1
so has part: feature:185256-185256:1:region

position:185256:1
position: 185256
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:185256-185256:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: rpl5; C to U RNA editing; CCG(P) to CTG(L)
so part of: sequence
location: 185261
location: region:185261-185261:1
so has part: feature:185261-185261:1:region

position:185261:1
position: 185261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:185261-185261:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: rpl5; C to U RNA editing (minor frequency); CCG(P) to TTG(L)
so part of: sequence
location: 185262
location: region:185262-185262:1
so has part: feature:185262-185262:1:region

position:185262:1
position: 185262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:185262-185262:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: rpl5; C to U RNA editing; CCG(P) to CTG(L)
so part of: sequence
location: 185273
location: region:185273-185273:1
so has part: feature:185273-185273:1:region

position:185273:1
position: 185273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:185273-185273:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: rpl5; C to U RNA editing; TCA(S) to TTA(L)
so part of: sequence
location: 185285
location: region:185285-185285:1
so has part: feature:185285-185285:1:region

position:185285:1
position: 185285
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:185285-185285:1:region

5'UTR
type: Five Prime UTR
subclass of: SO_0000204
RO_0002162: 3702
note: rpl5
so part of: sequence
location: complement(185320..185778)
location: region:185320-185778:-1
so has part: feature:185320-185778:-1:region

position:185320:-1
position: 185320
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:185778:-1
position: 185778
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:185320-185778:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: rpl5; alternative 5' transcript end
so part of: sequence
location: 185725
location: region:185725-185725:1
so has part: feature:185725-185725:1:region

position:185725:1
position: 185725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:185725-185725:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF107B
so part of: sequence
location: 187004..187327
location: region:187004-187327:1
so has part: feature:187004-187327:1:region

position:187004:1
position: 187004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:187327:1
position: 187327
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:187004-187327:1:region

DA397_mgt14
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
gene: trnG(GCC)
locus tag: DA397_mgt14
note: anticodon:GCC
so part of: sequence
location: 189287..189358
location: region:189287-189358:1
so has part: feature:189287-189358:1:exon
subclass of: SO_0000663
subclass of: SO_0000011

36335658
type: Gene
SIO_000068: ncbigene

position:189287:1
position: 189287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:189358:1
position: 189358
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:189287-189358:1:exon

DA397_mgt14
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3702
gene: trnG(GCC)
locus tag: DA397_mgt14
product: tRNA-Gly
SIO_010081: DA397_mgt14
subclass of: SO_0000673
so part of: DA397_mgt14
location: 189287..189358
location: region:189287-189358:1
so has part: feature:189287-189358:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:189287-189358:1:exon

DA397_mgt14
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
gene: trnG(GCC)
locus tag: DA397_mgt14
note: cosRNA M33
SIO_010081: DA397_mgt14
subclass of: SO_0000673
so part of: DA397_mgt14
location: 189287..189317
location: region:189287-189317:1
so has part: feature:189287-189317:1:exon

position:189317:1
position: 189317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:189287-189317:1:exon

5'UTR
type: Five Prime UTR
subclass of: SO_0000204
RO_0002162: 3702
note: ccmFC
so part of: sequence
location: 189359..189482
location: region:189359-189482:1
so has part: feature:189359-189482:1:region

position:189359:1
position: 189359
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:189482:1
position: 189482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:189359-189482:1:region

DA397_mgp24
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
alternative label: ccb452
alternative label: ccb6c
gene: ccmFC
locus tag: DA397_mgp24
gene synonym: ccb452; ccb6c
so part of: sequence
location: 189483..191770
location: region:189483-191770:1
so has part: feature:189483-191770:1:exon
subclass of: SO_0000010
subclass of: SO_0000011

36335691
type: Gene
SIO_000068: ncbigene

position:189483:1
position: 189483
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:191770:1
position: 191770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:189483-191770:1:exon

DA397_mgp24
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3702
alternative label: ccb452
alternative label: ccb6c
gene: ccmFC
locus tag: DA397_mgp24
gene synonym: ccb452; ccb6c
exception: RNA editing
codon start: 1
product: cytochrome c biogenesis FC
translation: MVQLHNFFFFIIFMVVLCGTAAPVLLKWFVSRDVSTGAPFFNGTIIPILISLFSLLVYLHSRKIIRSMDGAKSGVLVRASRPILLPDIIGRSSSETRARKALFFFVPVLHFCLLESKGDFSYLESFCGVLCLLFFCTFFFLARDRSAKRERARRRKGQTLRPNGNEQRRNDKMRCSGHPHLDLERRVEGFGPLAFPVPPELGGACVGGVPPEIGLEALALPRSRQLMAMAVGHDYYQKVPMKMNISHGGVCICMLGVLLSNTKKIQFTQRLPLGYELHMGKERCCLRGLDHLHGPTFHSICGNLMIYKPSLTNDRLMFEHDESLHADLLLINFPASYKNGKLEHFLHWWMKNRKHNNFWLTMFPEKRYFRERTSTAEVAIHTNLFTDLYALIGTGSSRTGGWYTTIMKLPFIFFIWIGFMLASLGGLPSLLRQLQKDKLRWN
SIO_010081: DA397_mgp24
subclass of: SO_0000673
so part of: DA397_mgp24
location: join(189483..190261,191221..191770)
location: region:189483-191770:1
so has part: feature:189483-190261:1:exon
so has part: feature:191221-191770:1:exon

YP_009472113.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:189483-190261:1:exon

position:190261:1
position: 190261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:191221-191770:1:exon

position:191221:1
position: 191221
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

DA397_mgp24
type: Exon
subclass of: SO_0000147
RO_0002162: 3702
alternative label: ccb452
alternative label: ccb6c
gene: ccmFC
locus tag: DA397_mgp24
gene synonym: ccb452; ccb6c
number: 1
SIO_010081: DA397_mgp24
subclass of: SO_0000673
so part of: DA397_mgp24
location: 189483..190261
location: region:189483-190261:1
so has part: feature:189483-190261:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:189483-190261:1:exon

DA397_mgp24
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
alternative label: ccb452
alternative label: ccb6c
gene: ccmFC
locus tag: DA397_mgp24
gene synonym: ccb452; ccb6c
note: ccmFC; C to U RNA editing; CCT(P) to CTT(L)
SIO_010081: DA397_mgp24
subclass of: SO_0000673
so part of: DA397_mgp24
location: 189532
location: region:189532-189532:1
so has part: feature:189532-189532:1:exon

position:189532:1
position: 189532
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:189532-189532:1:exon

DA397_mgp24
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
alternative label: ccb452
alternative label: ccb6c
gene: ccmFC
locus tag: DA397_mgp24
gene synonym: ccb452; ccb6c
note: ccmFC; C to U RNA editing; CCC(P) to TCC(S)
SIO_010081: DA397_mgp24
subclass of: SO_0000673
so part of: DA397_mgp24
location: 189585
location: region:189585-189585:1
so has part: feature:189585-189585:1:exon

position:189585:1
position: 189585
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:189585-189585:1:exon

DA397_mgp24
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
alternative label: ccb452
alternative label: ccb6c
gene: ccmFC
locus tag: DA397_mgp24
gene synonym: ccb452; ccb6c
note: ccmFC; C to U RNA editing (minor frequency); TCC(S) to TTC(F)
SIO_010081: DA397_mgp24
subclass of: SO_0000673
so part of: DA397_mgp24
location: 189586
location: region:189586-189586:1
so has part: feature:189586-189586:1:exon

position:189586:1
position: 189586
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:189586-189586:1:exon

DA397_mgp24
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
alternative label: ccb452
alternative label: ccb6c
gene: ccmFC
locus tag: DA397_mgp24
gene synonym: ccb452; ccb6c
note: ccmFC; C to U RNA editing; TCC(S) to TTC(F)
SIO_010081: DA397_mgp24
subclass of: SO_0000673
so part of: DA397_mgp24
location: 189604
location: region:189604-189604:1
so has part: feature:189604-189604:1:exon

position:189604:1
position: 189604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:189604-189604:1:exon

DA397_mgp24
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
alternative label: ccb452
alternative label: ccb6c
gene: ccmFC
locus tag: DA397_mgp24
gene synonym: ccb452; ccb6c
note: ccmFC; C to U RNA editing; synonymous
SIO_010081: DA397_mgp24
subclass of: SO_0000673
so part of: DA397_mgp24
location: 189605
location: region:189605-189605:1
so has part: feature:189605-189605:1:exon

position:189605:1
position: 189605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:189605-189605:1:exon

DA397_mgp24
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
alternative label: ccb452
alternative label: ccb6c
gene: ccmFC
locus tag: DA397_mgp24
gene synonym: ccb452; ccb6c
note: ccmFC; C to U RNA editing; CCT(P) to CTT(L)
SIO_010081: DA397_mgp24
subclass of: SO_0000673
so part of: DA397_mgp24
location: 189628
location: region:189628-189628:1
so has part: feature:189628-189628:1:exon

position:189628:1
position: 189628
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:189628-189628:1:exon

DA397_mgp24
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
alternative label: ccb452
alternative label: ccb6c
gene: ccmFC
locus tag: DA397_mgp24
gene synonym: ccb452; ccb6c
note: ccmFC; C to U RNA editing; TCA(S) to TTA(L)
SIO_010081: DA397_mgp24
subclass of: SO_0000673
so part of: DA397_mgp24
location: 189637
location: region:189637-189637:1
so has part: feature:189637-189637:1:exon

position:189637:1
position: 189637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:189637-189637:1:exon

DA397_mgp24
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
alternative label: ccb452
alternative label: ccb6c
gene: ccmFC
locus tag: DA397_mgp24
gene synonym: ccb452; ccb6c
note: ccmFC; C to U RNA editing; CCT(P) to TCT(S)
SIO_010081: DA397_mgp24
subclass of: SO_0000673
so part of: DA397_mgp24
location: 189642
location: region:189642-189642:1
so has part: feature:189642-189642:1:exon

position:189642:1
position: 189642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:189642-189642:1:exon

DA397_mgp24
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
alternative label: ccb452
alternative label: ccb6c
gene: ccmFC
locus tag: DA397_mgp24
gene synonym: ccb452; ccb6c
note: ccmFC; C to U RNA editing; synonymous
SIO_010081: DA397_mgp24
subclass of: SO_0000673
so part of: DA397_mgp24
location: 189657
location: region:189657-189657:1
so has part: feature:189657-189657:1:exon

position:189657:1
position: 189657
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:189657-189657:1:exon

DA397_mgp24
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
alternative label: ccb452
alternative label: ccb6c
gene: ccmFC
locus tag: DA397_mgp24
gene synonym: ccb452; ccb6c
note: ccmFC; C to U RNA editing (minor frequency); synonymous
SIO_010081: DA397_mgp24
subclass of: SO_0000673
so part of: DA397_mgp24
location: 189713
location: region:189713-189713:1
so has part: feature:189713-189713:1:exon

position:189713:1
position: 189713
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:189713-189713:1:exon

DA397_mgp24
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
alternative label: ccb452
alternative label: ccb6c
gene: ccmFC
locus tag: DA397_mgp24
gene synonym: ccb452; ccb6c
note: ccmFC; C to U RNA editing (minor frequency); synonymous
SIO_010081: DA397_mgp24
subclass of: SO_0000673
so part of: DA397_mgp24
location: 189797
location: region:189797-189797:1
so has part: feature:189797-189797:1:exon

position:189797:1
position: 189797
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:189797-189797:1:exon

DA397_mgp24
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
alternative label: ccb452
alternative label: ccb6c
gene: ccmFC
locus tag: DA397_mgp24
gene synonym: ccb452; ccb6c
note: ccmFC; C to U RNA editing (minor frequency); synonymous
SIO_010081: DA397_mgp24
subclass of: SO_0000673
so part of: DA397_mgp24
location: 189803
location: region:189803-189803:1
so has part: feature:189803-189803:1:exon

position:189803:1
position: 189803
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:189803-189803:1:exon

DA397_mgp24
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
alternative label: ccb452
alternative label: ccb6c
gene: ccmFC
locus tag: DA397_mgp24
gene synonym: ccb452; ccb6c
note: ccmFC; C to U RNA editing; synonymous
SIO_010081: DA397_mgp24
subclass of: SO_0000673
so part of: DA397_mgp24
location: 189815
location: region:189815-189815:1
so has part: feature:189815-189815:1:exon

position:189815:1
position: 189815
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:189815-189815:1:exon

DA397_mgp24
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
alternative label: ccb452
alternative label: ccb6c
gene: ccmFC
locus tag: DA397_mgp24
gene synonym: ccb452; ccb6c
note: ccmFC; C to U RNA editing; CGT(R) to TGT(C)
SIO_010081: DA397_mgp24
subclass of: SO_0000673
so part of: DA397_mgp24
location: 189816
location: region:189816-189816:1
so has part: feature:189816-189816:1:exon

position:189816:1
position: 189816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:189816-189816:1:exon

DA397_mgp24
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
alternative label: ccb452
alternative label: ccb6c
gene: ccmFC
locus tag: DA397_mgp24
gene synonym: ccb452; ccb6c
note: ccmFC; C to U RNA editing (minor frequency); synonymous
SIO_010081: DA397_mgp24
subclass of: SO_0000673
so part of: DA397_mgp24
location: 189860
location: region:189860-189860:1
so has part: feature:189860-189860:1:exon

position:189860:1
position: 189860
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:189860-189860:1:exon

DA397_mgp24
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
alternative label: ccb452
alternative label: ccb6c
gene: ccmFC
locus tag: DA397_mgp24
gene synonym: ccb452; ccb6c
note: ccmFC; C to U RNA editing; CGT(R) to TGT(C)
SIO_010081: DA397_mgp24
subclass of: SO_0000673
so part of: DA397_mgp24
location: 189888
location: region:189888-189888:1
so has part: feature:189888-189888:1:exon

position:189888:1
position: 189888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:189888-189888:1:exon

DA397_mgp24
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
alternative label: ccb452
alternative label: ccb6c
gene: ccmFC
locus tag: DA397_mgp24
gene synonym: ccb452; ccb6c
note: ccmFC; C to U RNA editing; CTC(L) to TTC(F)
SIO_010081: DA397_mgp24
subclass of: SO_0000673
so part of: DA397_mgp24
location: 189897
location: region:189897-189897:1
so has part: feature:189897-189897:1:exon

position:189897:1
position: 189897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:189897-189897:1:exon

DA397_mgp24
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
alternative label: ccb452
alternative label: ccb6c
gene: ccmFC
locus tag: DA397_mgp24
gene synonym: ccb452; ccb6c
note: ccmFC; C to U RNA editing (minor frequency); CGG(R) to TGG(W)
SIO_010081: DA397_mgp24
subclass of: SO_0000673
so part of: DA397_mgp24
location: 189963
location: region:189963-189963:1
so has part: feature:189963-189963:1:exon

position:189963:1
position: 189963
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:189963-189963:1:exon

DA397_mgp24
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
alternative label: ccb452
alternative label: ccb6c
gene: ccmFC
locus tag: DA397_mgp24
gene synonym: ccb452; ccb6c
note: ccmFC; C to U RNA editing (minor frequency); synonymous
SIO_010081: DA397_mgp24
subclass of: SO_0000673
so part of: DA397_mgp24
location: 190043
location: region:190043-190043:1
so has part: feature:190043-190043:1:exon

position:190043:1
position: 190043
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:190043-190043:1:exon

DA397_mgp24
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
alternative label: ccb452
alternative label: ccb6c
gene: ccmFC
locus tag: DA397_mgp24
gene synonym: ccb452; ccb6c
note: ccmFC; C to U RNA editing (minor frequency); synonymous
SIO_010081: DA397_mgp24
subclass of: SO_0000673
so part of: DA397_mgp24
location: 190238
location: region:190238-190238:1
so has part: feature:190238-190238:1:exon

position:190238:1
position: 190238
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:190238-190238:1:exon

DA397_mgp24
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
alternative label: ccb452
alternative label: ccb6c
nc RNA class: other
gene: ccmFC
locus tag: DA397_mgp24
gene synonym: ccb452; ccb6c
note: cosRNA M34
SIO_010081: DA397_mgp24
subclass of: SO_0000673
so part of: DA397_mgp24
location: 190679..190694
location: region:190679-190694:1
so has part: feature:190679-190694:1:exon

position:190679:1
position: 190679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:190694:1
position: 190694
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:190679-190694:1:exon

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M158
so part of: sequence
location: complement(190913..190946)
location: region:190913-190946:-1
so has part: feature:190913-190946:-1:region

position:190913:-1
position: 190913
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:190946:-1
position: 190946
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:190913-190946:-1:region

DA397_mgp24
type: Exon
subclass of: SO_0000147
RO_0002162: 3702
alternative label: ccb452
alternative label: ccb6c
gene: ccmFC
locus tag: DA397_mgp24
gene synonym: ccb452; ccb6c
number: 2
SIO_010081: DA397_mgp24
subclass of: SO_0000673
so part of: DA397_mgp24
location: 191221..191770
location: region:191221-191770:1
so has part: feature:191221-191770:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:191221-191770:1:exon

DA397_mgp24
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
alternative label: ccb452
alternative label: ccb6c
gene: ccmFC
locus tag: DA397_mgp24
gene synonym: ccb452; ccb6c
note: ccmFC; C to U RNA editing (minor frequency); CAT(H) to TAT(Y)
SIO_010081: DA397_mgp24
subclass of: SO_0000673
so part of: DA397_mgp24
location: 191273
location: region:191273-191273:1
so has part: feature:191273-191273:1:exon

position:191273:1
position: 191273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:191273-191273:1:exon

DA397_mgp24
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
alternative label: ccb452
alternative label: ccb6c
gene: ccmFC
locus tag: DA397_mgp24
gene synonym: ccb452; ccb6c
note: ccmFC; C to U RNA editing (minor frequency); CCG(P) to TCG(S)
SIO_010081: DA397_mgp24
subclass of: SO_0000673
so part of: DA397_mgp24
location: 191366
location: region:191366-191366:1
so has part: feature:191366-191366:1:exon

position:191366:1
position: 191366
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:191366-191366:1:exon

DA397_mgp24
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
alternative label: ccb452
alternative label: ccb6c
gene: ccmFC
locus tag: DA397_mgp24
gene synonym: ccb452; ccb6c
note: ccmFC; C to U RNA editing (minor frequency); synonymous
SIO_010081: DA397_mgp24
subclass of: SO_0000673
so part of: DA397_mgp24
location: 191591
location: region:191591-191591:1
so has part: feature:191591-191591:1:exon

position:191591:1
position: 191591
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:191591-191591:1:exon

DA397_mgp24
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
alternative label: ccb452
alternative label: ccb6c
gene: ccmFC
locus tag: DA397_mgp24
gene synonym: ccb452; ccb6c
note: ccmFC; C to U RNA editing; TCG(S) to TTG(L)
SIO_010081: DA397_mgp24
subclass of: SO_0000673
so part of: DA397_mgp24
location: 191613
location: region:191613-191613:1
so has part: feature:191613-191613:1:exon

position:191613:1
position: 191613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:191613-191613:1:exon

DA397_mgp24
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
alternative label: ccb452
alternative label: ccb6c
gene: ccmFC
locus tag: DA397_mgp24
gene synonym: ccb452; ccb6c
note: ccmFC; C to U RNA editing; synonymous
SIO_010081: DA397_mgp24
subclass of: SO_0000673
so part of: DA397_mgp24
location: 191656
location: region:191656-191656:1
so has part: feature:191656-191656:1:exon

position:191656:1
position: 191656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:191656-191656:1:exon

DA397_mgp24
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
alternative label: ccb452
alternative label: ccb6c
gene: ccmFC
locus tag: DA397_mgp24
gene synonym: ccb452; ccb6c
note: ccmFC; C to U RNA editing; CGG(R) to TGG(W)
SIO_010081: DA397_mgp24
subclass of: SO_0000673
so part of: DA397_mgp24
location: 191687
location: region:191687-191687:1
so has part: feature:191687-191687:1:exon

position:191687:1
position: 191687
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:191687-191687:1:exon

DA397_mgp24
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
alternative label: ccb452
alternative label: ccb6c
gene: ccmFC
locus tag: DA397_mgp24
gene synonym: ccb452; ccb6c
note: ccmFC; C to U RNA editing; TCG(S) to TTG(L)
SIO_010081: DA397_mgp24
subclass of: SO_0000673
so part of: DA397_mgp24
location: 191721
location: region:191721-191721:1
so has part: feature:191721-191721:1:exon

position:191721:1
position: 191721
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:191721-191721:1:exon

DA397_mgp24
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
alternative label: ccb452
alternative label: ccb6c
gene: ccmFC
locus tag: DA397_mgp24
gene synonym: ccb452; ccb6c
note: ccmFC; C to U RNA editing (minor frequency); CAG(Q) to TAG(*)
SIO_010081: DA397_mgp24
subclass of: SO_0000673
so part of: DA397_mgp24
location: 191738
location: region:191738-191738:1
so has part: feature:191738-191738:1:exon

position:191738:1
position: 191738
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:191738-191738:1:exon

DA397_mgp24
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
alternative label: ccb452
alternative label: ccb6c
gene: ccmFC
locus tag: DA397_mgp24
gene synonym: ccb452; ccb6c
note: ccmFC; C to U RNA editing (minor frequency); CAA(Q) to TAA(*)
SIO_010081: DA397_mgp24
subclass of: SO_0000673
so part of: DA397_mgp24
location: 191744
location: region:191744-191744:1
so has part: feature:191744-191744:1:exon

position:191744:1
position: 191744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:191744-191744:1:exon

DA397_mgp24
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
alternative label: ccb452
alternative label: ccb6c
gene: ccmFC
locus tag: DA397_mgp24
gene synonym: ccb452; ccb6c
note: ccmFC; C to U RNA editing; CGA(R) to TGA(*)
SIO_010081: DA397_mgp24
subclass of: SO_0000673
so part of: DA397_mgp24
location: 191768
location: region:191768-191768:1
so has part: feature:191768-191768:1:exon

position:191768:1
position: 191768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:191768-191768:1:exon

3'UTR
type: Three Prime UTR
subclass of: SO_0000205
RO_0002162: 3702
note: ccmFC
so part of: sequence
location: 191801..191915
location: region:191801-191915:1
so has part: feature:191801-191915:1:region

position:191801:1
position: 191801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:191915:1
position: 191915
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:191801-191915:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: ccmFC; alternative 3' transcript end (minor frequency)
so part of: sequence
location: 191810
location: region:191810-191810:1
so has part: feature:191810-191810:1:region

position:191810:1
position: 191810
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:191810-191810:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: Large2-2
rpt type: direct
so part of: sequence
location: 194198..198390
location: region:194198-198390:1
so has part: feature:194198-198390:1:region

position:194198:1
position: 194198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:198390:1
position: 198390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:194198-198390:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF139B
so part of: sequence
location: complement(194560..194979)
location: region:194560-194979:-1
so has part: feature:194560-194979:-1:region

position:194560:-1
position: 194560
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:194979:-1
position: 194979
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:194560-194979:-1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M112
so part of: sequence
location: complement(196025..196068)
location: region:196025-196068:-1
so has part: feature:196025-196068:-1:region

position:196025:-1
position: 196025
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:196068:-1
position: 196068
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:196025-196068:-1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M194
so part of: sequence
location: complement(196076..196100)
location: region:196076-196100:-1
so has part: feature:196076-196100:-1:region

position:196076:-1
position: 196076
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:196100:-1
position: 196100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:196076-196100:-1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M113
so part of: sequence
location: complement(196127..196147)
location: region:196127-196147:-1
so has part: feature:196127-196147:-1:region

position:196127:-1
position: 196127
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:196147:-1
position: 196147
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:196127-196147:-1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M114
so part of: sequence
location: complement(196148..196172)
location: region:196148-196172:-1
so has part: feature:196148-196172:-1:region

position:196148:-1
position: 196148
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:196172:-1
position: 196172
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:196148-196172:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: BB-4
so part of: sequence
location: 196153..196297
location: region:196153-196297:1
so has part: feature:196153-196297:1:region

position:196153:1
position: 196153
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:196297:1
position: 196297
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:196153-196297:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M1
so part of: sequence
location: 197778..197796
location: region:197778-197796:1
so has part: feature:197778-197796:1:region

position:197778:1
position: 197778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:197796:1
position: 197796
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:197778-197796:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF161
so part of: sequence
location: 200226..200711
location: region:200226-200711:1
so has part: feature:200226-200711:1:region

position:200226:1
position: 200226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:200711:1
position: 200711
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:200226-200711:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: QQ-1
rpt type: direct
so part of: sequence
location: 200801..201039
location: region:200801-201039:1
so has part: feature:200801-201039:1:region

position:200801:1
position: 200801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:201039:1
position: 201039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:200801-201039:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M35
so part of: sequence
location: 200901..200939
location: region:200901-200939:1
so has part: feature:200901-200939:1:region

position:200901:1
position: 200901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:200939:1
position: 200939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:200901-200939:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF106C
so part of: sequence
location: complement(202729..203049)
location: region:202729-203049:-1
so has part: feature:202729-203049:-1:region

position:202729:-1
position: 202729
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:203049:-1
position: 203049
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:202729-203049:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: F-1
rpt type: direct
so part of: sequence
location: 206095..206444
location: region:206095-206444:1
so has part: feature:206095-206444:1:region

position:206095:1
position: 206095
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:206444:1
position: 206444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:206095-206444:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M212
so part of: sequence
location: complement(206224..206273)
location: region:206224-206273:-1
so has part: feature:206224-206273:-1:region

position:206224:-1
position: 206224
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:206273:-1
position: 206273
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:206224-206273:-1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M213
so part of: sequence
location: complement(206224..206245)
location: region:206224-206245:-1
so has part: feature:206224-206245:-1:region

position:206245:-1
position: 206245
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:206224-206245:-1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M213
so part of: sequence
location: complement(206464..206485)
location: region:206464-206485:-1
so has part: feature:206464-206485:-1:region

position:206464:-1
position: 206464
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:206485:-1
position: 206485
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:206464-206485:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF313
so part of: sequence
location: complement(206517..207458)
location: region:206517-207458:-1
so has part: feature:206517-207458:-1:region

position:206517:-1
position: 206517
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:207458:-1
position: 207458
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:206517-207458:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: GG-2
rpt type: inverted
so part of: sequence
location: 207225..207332
location: region:207225-207332:1
so has part: feature:207225-207332:1:region

position:207225:1
position: 207225
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:207332:1
position: 207332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:207225-207332:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: R-2
rpt type: direct
so part of: sequence
location: 207329..207534
location: region:207329-207534:1
so has part: feature:207329-207534:1:region

position:207329:1
position: 207329
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:207534:1
position: 207534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:207329-207534:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M214
so part of: sequence
location: complement(207549..207567)
location: region:207549-207567:-1
so has part: feature:207549-207567:-1:region

position:207549:-1
position: 207549
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:207567:-1
position: 207567
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:207549-207567:-1:region

3'UTR
type: Three Prime UTR
subclass of: SO_0000205
RO_0002162: 3702
note: nad4
so part of: sequence
location: complement(207550..207579)
location: region:207550-207579:-1
so has part: feature:207550-207579:-1:region

position:207550:-1
position: 207550
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:207579:-1
position: 207579
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:207550-207579:-1:region

DA397_mgp23
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
gene: nad4
locus tag: DA397_mgp23
so part of: sequence
location: complement(207580..215562)
location: region:207580-215562:-1
so has part: feature:207580-215562:-1:exon
subclass of: SO_0000010

36335659
type: Gene
SIO_000068: ncbigene

position:207580:-1
position: 207580
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:215562:-1
position: 215562
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:207580-215562:-1:exon

DA397_mgp23
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3702
gene: nad4
locus tag: DA397_mgp23
exception: RNA editing
codon start: 1
product: NADH dehydrogenase subunit 4
translation: MLEHFCECYFNLSGLILCPVLGSIILLFIPNSRIRLIRLIGLCASLITFLYSLVLWIQFDSSTAKFQFVESLRWLPYENINFYLGIDGISLFFVILTTFLIPICILVGWSGMRSYGKEYIIAFLICEFLMIAVFCMLDLLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSLFMLLAILLILFQTGTTDLQILLTTEFSERRQIFLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKFGTYGFLRFSIPMFPEATLCFTPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNLVTIGMFSLNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNFSTIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVSGNLKPDFLHKFSDLNGREVFIFIPFLVGVVWMGVYPKVFLDCMHTSVSNLVQHGKFH
SIO_010081: DA397_mgp23
subclass of: SO_0000673
so part of: DA397_mgp23
location: complement(join(207580..207668,209611..210033,213115..213629,215102..215562))
location: region:207580-215562:-1
so has part: feature:215102-215562:-1:exon
so has part: feature:213115-213629:-1:exon
so has part: feature:209611-210033:-1:exon
so has part: feature:207580-207668:-1:exon

YP_009472114.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:215102-215562:-1:exon

position:215102:-1
position: 215102
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:213115-213629:-1:exon

position:213115:-1
position: 213115
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:213629:-1
position: 213629
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:209611-210033:-1:exon

position:209611:-1
position: 209611
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:210033:-1
position: 210033
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:207580-207668:-1:exon

position:207668:-1
position: 207668
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

DA397_mgp23
type: Exon
subclass of: SO_0000147
RO_0002162: 3702
gene: nad4
locus tag: DA397_mgp23
number: 4
SIO_010081: DA397_mgp23
subclass of: SO_0000673
so part of: DA397_mgp23
location: complement(207580..207668)
location: region:207580-207668:-1
so has part: feature:207580-207668:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:207580-207668:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing; CCG(P) to CTG(L)
so part of: sequence
location: 207635
location: region:207635-207635:1
so has part: feature:207635-207635:1:region

position:207635:1
position: 207635
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:207635-207635:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing; CAC(H) to TAC(Y)
so part of: sequence
location: 207651
location: region:207651-207651:1
so has part: feature:207651-207651:1:region

position:207651:1
position: 207651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:207651-207651:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing; CGG(R) to TGG(W)
so part of: sequence
location: 207663
location: region:207663-207663:1
so has part: feature:207663-207663:1:region

position:207663:1
position: 207663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:207663-207663:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 207667
location: region:207667-207667:1
so has part: feature:207667-207667:1:region

position:207667:1
position: 207667
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:207667-207667:1:region

DA397_mgp23
type: Exon
subclass of: SO_0000147
RO_0002162: 3702
gene: nad4
locus tag: DA397_mgp23
number: 3
SIO_010081: DA397_mgp23
subclass of: SO_0000673
so part of: DA397_mgp23
location: complement(209611..210033)
location: region:209611-210033:-1
so has part: feature:209611-210033:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:209611-210033:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 209636
location: region:209636-209636:1
so has part: feature:209636-209636:1:region

position:209636:1
position: 209636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:209636-209636:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing; TCC(S) to TTC(F)
so part of: sequence
location: 209637
location: region:209637-209637:1
so has part: feature:209637-209637:1:region

position:209637:1
position: 209637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:209637-209637:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing; TCA(S) to TTA(L)
so part of: sequence
location: 209655
location: region:209655-209655:1
so has part: feature:209655-209655:1:region

position:209655:1
position: 209655
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:209655-209655:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 209804
location: region:209804-209804:1
so has part: feature:209804-209804:1:region

position:209804:1
position: 209804
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:209804-209804:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 209816
location: region:209816-209816:1
so has part: feature:209816-209816:1:region

position:209816:1
position: 209816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:209816-209816:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing; TCA(S) to TTA(L)
so part of: sequence
location: 209838
location: region:209838-209838:1
so has part: feature:209838-209838:1:region

position:209838:1
position: 209838
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:209838-209838:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing; TCT(S) to TTT(F)
so part of: sequence
location: 209862
location: region:209862-209862:1
so has part: feature:209862-209862:1:region

position:209862:1
position: 209862
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:209862-209862:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 209879
location: region:209879-209879:1
so has part: feature:209879-209879:1:region

position:209879:1
position: 209879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:209879-209879:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing; CTC(L) to TTC(F)
so part of: sequence
location: 209881
location: region:209881-209881:1
so has part: feature:209881-209881:1:region

position:209881:1
position: 209881
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:209881-209881:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing; synonymous
so part of: sequence
location: 209909
location: region:209909-209909:1
so has part: feature:209909-209909:1:region

position:209909:1
position: 209909
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:209909-209909:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing; CCT(P) to TCT(S)
so part of: sequence
location: 209977
location: region:209977-209977:1
so has part: feature:209977-209977:1:region

position:209977:1
position: 209977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:209977-209977:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing; CCG(P) to CTG(L)
so part of: sequence
location: 210000
location: region:210000-210000:1
so has part: feature:210000-210000:1:region

position:210000:1
position: 210000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:210000-210000:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing; CCG(P) to CTG(L)
so part of: sequence
location: 210033
location: region:210033-210033:1
so has part: feature:210033-210033:1:region

position:210033:1
position: 210033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:210033-210033:1:region

DA397_mgp23
type: Exon
subclass of: SO_0000147
RO_0002162: 3702
gene: nad4
locus tag: DA397_mgp23
number: 2
SIO_010081: DA397_mgp23
subclass of: SO_0000673
so part of: DA397_mgp23
location: complement(213115..213629)
location: region:213115-213629:-1
so has part: feature:213115-213629:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:213115-213629:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing; TCA(S) to TTA(L)
so part of: sequence
location: 213195
location: region:213195-213195:1
so has part: feature:213195-213195:1:region

position:213195:1
position: 213195
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:213195-213195:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing; TCT(S) to TTT(F)
so part of: sequence
location: 213255
location: region:213255-213255:1
so has part: feature:213255-213255:1:region

position:213255:1
position: 213255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:213255-213255:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing; CAC(H) to TAC(Y)
so part of: sequence
location: 213307
location: region:213307-213307:1
so has part: feature:213307-213307:1:region

position:213307:1
position: 213307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:213307-213307:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing; CCT(P) to CTT(L)
so part of: sequence
location: 213324
location: region:213324-213324:1
so has part: feature:213324-213324:1:region

position:213324:1
position: 213324
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:213324-213324:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing (minor frequency); CTT(L) to TTT(F)
so part of: sequence
location: 213325
location: region:213325-213325:1
so has part: feature:213325-213325:1:region

position:213325:1
position: 213325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:213325-213325:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 213338
location: region:213338-213338:1
so has part: feature:213338-213338:1:region

position:213338:1
position: 213338
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:213338-213338:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 213344
location: region:213344-213344:1
so has part: feature:213344-213344:1:region

position:213344:1
position: 213344
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:213344-213344:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 213425
location: region:213425-213425:1
so has part: feature:213425-213425:1:region

position:213425:1
position: 213425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:213425-213425:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing; TCT(S) to TTT(F)
so part of: sequence
location: 213432
location: region:213432-213432:1
so has part: feature:213432-213432:1:region

position:213432:1
position: 213432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:213432-213432:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 213455
location: region:213455-213455:1
so has part: feature:213455-213455:1:region

position:213455:1
position: 213455
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:213455-213455:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing; TCA(S) to TTA(L)
so part of: sequence
location: 213483
location: region:213483-213483:1
so has part: feature:213483-213483:1:region

position:213483:1
position: 213483
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:213483-213483:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M36
so part of: sequence
location: 214899..214913
location: region:214899-214913:1
so has part: feature:214899-214913:1:region

position:214899:1
position: 214899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:214913:1
position: 214913
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:214899-214913:1:region

DA397_mgp23
type: Exon
subclass of: SO_0000147
RO_0002162: 3702
gene: nad4
locus tag: DA397_mgp23
number: 1
SIO_010081: DA397_mgp23
subclass of: SO_0000673
so part of: DA397_mgp23
location: complement(215102..215562)
location: region:215102-215562:-1
so has part: feature:215102-215562:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:215102-215562:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing; CCA(P) to CTA(L)
so part of: sequence
location: 215114
location: region:215114-215114:1
so has part: feature:215114-215114:1:region

position:215114:1
position: 215114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:215114-215114:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing; CCC(P) to TTC(F)
so part of: sequence
location: 215126
location: region:215126-215126:1
so has part: feature:215126-215126:1:region

position:215126:1
position: 215126
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:215126-215126:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing; CCC(P) to TTC(F)
so part of: sequence
location: 215127
location: region:215127-215127:1
so has part: feature:215127-215127:1:region

position:215127:1
position: 215127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:215127-215127:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 215145
location: region:215145-215145:1
so has part: feature:215145-215145:1:region

position:215145:1
position: 215145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:215145-215145:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing; CGC(R) to TGC(C)
so part of: sequence
location: 215160
location: region:215160-215160:1
so has part: feature:215160-215160:1:region

position:215160:1
position: 215160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:215160-215160:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 215178
location: region:215178-215178:1
so has part: feature:215178-215178:1:region

position:215178:1
position: 215178
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:215178-215178:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing; CGT(R) to TGT(C)
so part of: sequence
location: 215187
location: region:215187-215187:1
so has part: feature:215187-215187:1:region

position:215187:1
position: 215187
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:215187-215187:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing; ACA(T) to ATA(I)
so part of: sequence
location: 215201
location: region:215201-215201:1
so has part: feature:215201-215201:1:region

position:215201:1
position: 215201
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:215201-215201:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing (minor frequency); TCT(S) to TTT(F)
so part of: sequence
location: 215234
location: region:215234-215234:1
so has part: feature:215234-215234:1:region

position:215234:1
position: 215234
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:215234-215234:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing; TCA(S) to TTA(L)
so part of: sequence
location: 215246
location: region:215246-215246:1
so has part: feature:215246-215246:1:region

position:215246:1
position: 215246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:215246-215246:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 215260
location: region:215260-215260:1
so has part: feature:215260-215260:1:region

position:215260:1
position: 215260
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:215260-215260:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 215284
location: region:215284-215284:1
so has part: feature:215284-215284:1:region

position:215284:1
position: 215284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:215284-215284:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 215302
location: region:215302-215302:1
so has part: feature:215302-215302:1:region

position:215302:1
position: 215302
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:215302-215302:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 215323
location: region:215323-215323:1
so has part: feature:215323-215323:1:region

position:215323:1
position: 215323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:215323-215323:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing; TCT(S) to TTT(F)
so part of: sequence
location: 215366
location: region:215366-215366:1
so has part: feature:215366-215366:1:region

position:215366:1
position: 215366
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:215366-215366:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing; CGG(R) to TGG(W)
so part of: sequence
location: 215397
location: region:215397-215397:1
so has part: feature:215397-215397:1:region

position:215397:1
position: 215397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:215397-215397:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing; CCT(P) to CTT(L)
so part of: sequence
location: 215399
location: region:215399-215399:1
so has part: feature:215399-215399:1:region

position:215399:1
position: 215399
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:215399-215399:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing; CCT(P) to CTT(L)
so part of: sequence
location: 215405
location: region:215405-215405:1
so has part: feature:215405-215405:1:region

position:215405:1
position: 215405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:215405-215405:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing; synonymous
so part of: sequence
location: 215439
location: region:215439-215439:1
so has part: feature:215439-215439:1:region

position:215439:1
position: 215439
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:215439-215439:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing; CCG(P) to CTG(L)
so part of: sequence
location: 215456
location: region:215456-215456:1
so has part: feature:215456-215456:1:region

position:215456:1
position: 215456
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:215456-215456:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing (minor frequency); TCA(S) to TTA(L)
so part of: sequence
location: 215468
location: region:215468-215468:1
so has part: feature:215468-215468:1:region

position:215468:1
position: 215468
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:215468-215468:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 215479
location: region:215479-215479:1
so has part: feature:215479-215479:1:region

position:215479:1
position: 215479
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:215479-215479:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing; ACT(T) to ATT(I)
so part of: sequence
location: 215489
location: region:215489-215489:1
so has part: feature:215489-215489:1:region

position:215489:1
position: 215489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:215489-215489:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad4; C to U RNA editing; TCT(S) to TTT(F)
so part of: sequence
location: 215534
location: region:215534-215534:1
so has part: feature:215534-215534:1:region

position:215534:1
position: 215534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:215534-215534:1:region

5'UTR
type: Five Prime UTR
subclass of: SO_0000204
RO_0002162: 3702
note: nad4
so part of: sequence
location: complement(215563..215790)
location: region:215563-215790:-1
so has part: feature:215563-215790:-1:region

position:215563:-1
position: 215563
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:215790:-1
position: 215790
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:215563-215790:-1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M37
so part of: sequence
location: 216293..216316
location: region:216293-216316:1
so has part: feature:216293-216316:1:region

position:216293:1
position: 216293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:216316:1
position: 216316
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:216293-216316:1:region

DA397_mgp22
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
alternative label: orfX
alternative label: tatC
gene: mttB
locus tag: DA397_mgp22
gene synonym: orfX; tatC
so part of: sequence
location: complement(218904..219746)
location: region:218904-219746:-1
so has part: feature:218904-219746:-1:exon
subclass of: SO_0000010
subclass of: SO_0000011

36335660
type: Gene
SIO_000068: ncbigene

position:218904:-1
position: 218904
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:219746:-1
position: 219746
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:218904-219746:-1:exon

DA397_mgp22
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3702
alternative label: orfX
alternative label: tatC
gene: mttB
locus tag: DA397_mgp22
gene synonym: orfX; tatC
exception: RNA editing
codon start: 1
product: transport membrane protein
translation: LNYLYISYEFNFALETILGEVRIRSVWILIGLGLTWFTCYWFSEELIFLLALPFLTLPFDSYFVCTQLTEAFSTFVATSSIACSYFVFPLISYQIWCFLIPSCYGEQRTKYNRFFYLSGSCFFLFLFLTFSWVVPNVWHFLYFVGATSTNSLMIKLQPKIYDYIMLTVRILFISSVCSQVPVIVICLLELRGLSLETFTNNRRFLMVFSLFTAALFTPPDIWCQIVACFLISLIIELAIFVALIVQVREEGWTSGMRESGSIEKKNKSSPPPRTWQSNYQ
SIO_010081: DA397_mgp22
subclass of: SO_0000673
so part of: DA397_mgp22
location: complement(218904..219746)
location: region:218904-219746:-1
so has part: feature:218904-219746:-1:exon

YP_009472115.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:218904-219746:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; 3' transcript end occurs prior to first in-frame stop codon
so part of: sequence
location: 218912
location: region:218912-218912:1
so has part: feature:218912-218912:1:region

position:218912:1
position: 218912
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:218912-218912:1:region

DA397_mgp22
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
alternative label: orfX
alternative label: tatC
nc RNA class: other
gene: mttB
locus tag: DA397_mgp22
gene synonym: orfX; tatC
note: cosRNA M215
SIO_010081: DA397_mgp22
subclass of: SO_0000673
so part of: DA397_mgp22
location: complement(218913..218935)
location: region:218913-218935:-1
so has part: feature:218913-218935:-1:exon

position:218913:-1
position: 218913
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:218935:-1
position: 218935
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:218913-218935:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; C to U RNA editing; TCG(S) to TTG(L)
so part of: sequence
location: 219019
location: region:219019-219019:1
so has part: feature:219019-219019:1:region

position:219019:1
position: 219019
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219019-219019:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 219060
location: region:219060-219060:1
so has part: feature:219060-219060:1:region

position:219060:1
position: 219060
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219060-219060:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; C to U RNA editing; CGT(R) to TGT(C)
so part of: sequence
location: 219065
location: region:219065-219065:1
so has part: feature:219065-219065:1:region

position:219065:1
position: 219065
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219065-219065:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; C to U RNA editing; synonymous
so part of: sequence
location: 219072
location: region:219072-219072:1
so has part: feature:219072-219072:1:region

position:219072:1
position: 219072
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219072-219072:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; C to U RNA editing (minor frequency); CCG(P) to TCG(S)
so part of: sequence
location: 219092
location: region:219092-219092:1
so has part: feature:219092-219092:1:region

position:219092:1
position: 219092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219092-219092:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; C to U RNA editing; synonymous
so part of: sequence
location: 219099
location: region:219099-219099:1
so has part: feature:219099-219099:1:region

position:219099:1
position: 219099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219099-219099:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; C to U RNA editing; TCC(S) to TTC(F)
so part of: sequence
location: 219100
location: region:219100-219100:1
so has part: feature:219100-219100:1:region

position:219100:1
position: 219100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219100-219100:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; C to U RNA editing (minor frequency); ACA(T) to ATA(I)
so part of: sequence
location: 219112
location: region:219112-219112:1
so has part: feature:219112-219112:1:region

position:219112:1
position: 219112
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219112-219112:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; C to U RNA editing; CTC(L) to TTC(F)
so part of: sequence
location: 219116
location: region:219116-219116:1
so has part: feature:219116-219116:1:region

position:219116:1
position: 219116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219116-219116:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; C to U RNA editing; CCG(P) to TCG(S)
so part of: sequence
location: 219122
location: region:219122-219122:1
so has part: feature:219122-219122:1:region

position:219122:1
position: 219122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219122-219122:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; C to U RNA editing; CCA(P) to CTA(L)
so part of: sequence
location: 219178
location: region:219178-219178:1
so has part: feature:219178-219178:1:region

position:219178:1
position: 219178
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219178-219178:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; C to U RNA editing (minor frequency); synonymous due to other edits in codon
so part of: sequence
location: 219179
location: region:219179-219179:1
so has part: feature:219179-219179:1:region

position:219179:1
position: 219179
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219179-219179:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; C to U RNA editing; CCA(P) to CTA(L)
so part of: sequence
location: 219184
location: region:219184-219184:1
so has part: feature:219184-219184:1:region

position:219184:1
position: 219184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219184-219184:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 219213
location: region:219213-219213:1
so has part: feature:219213-219213:1:region

position:219213:1
position: 219213
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219213-219213:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; C to U RNA editing; CCA(P) to TCA(S)
so part of: sequence
location: 219227
location: region:219227-219227:1
so has part: feature:219227-219227:1:region

position:219227:1
position: 219227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219227-219227:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; C to U RNA editing; TCG(S) to TTG(L)
so part of: sequence
location: 219235
location: region:219235-219235:1
so has part: feature:219235-219235:1:region

position:219235:1
position: 219235
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219235-219235:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; C to U RNA editing; CAT(H) to TAT(Y)
so part of: sequence
location: 219260
location: region:219260-219260:1
so has part: feature:219260-219260:1:region

position:219260:1
position: 219260
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219260-219260:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; C to U RNA editing; synonymous
so part of: sequence
location: 219291
location: region:219291-219291:1
so has part: feature:219291-219291:1:region

position:219291:1
position: 219291
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219291-219291:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; C to U RNA editing (minor frequency); TCA(S) to TTA(L)
so part of: sequence
location: 219304
location: region:219304-219304:1
so has part: feature:219304-219304:1:region

position:219304:1
position: 219304
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219304-219304:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; C to U RNA editing; CCA(P) to CTA(L)
so part of: sequence
location: 219325
location: region:219325-219325:1
so has part: feature:219325-219325:1:region

position:219325:1
position: 219325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219325-219325:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; C to U RNA editing (minor frequency); CCC(P) to CTC(L)
so part of: sequence
location: 219343
location: region:219343-219343:1
so has part: feature:219343-219343:1:region

position:219343:1
position: 219343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219343-219343:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; C to U RNA editing; CGG(R) to TGG(W)
so part of: sequence
location: 219353
location: region:219353-219353:1
so has part: feature:219353-219353:1:region

position:219353:1
position: 219353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219353-219353:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; C to U RNA editing; CCC(P) to TCC(S)
so part of: sequence
location: 219356
location: region:219356-219356:1
so has part: feature:219356-219356:1:region

position:219356:1
position: 219356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219356-219356:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; C to U RNA editing; CCT(P) to TTT(F)
so part of: sequence
location: 219358
location: region:219358-219358:1
so has part: feature:219358-219358:1:region

position:219358:1
position: 219358
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219358-219358:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; C to U RNA editing; CCT(P) to TTT(F)
so part of: sequence
location: 219359
location: region:219359-219359:1
so has part: feature:219359-219359:1:region

position:219359:1
position: 219359
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219359-219359:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 219378
location: region:219378-219378:1
so has part: feature:219378-219378:1:region

position:219378:1
position: 219378
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219378-219378:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 219381
location: region:219381-219381:1
so has part: feature:219381-219381:1:region

position:219381:1
position: 219381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219381-219381:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; C to U RNA editing; CGC(R) to TGC(C)
so part of: sequence
location: 219386
location: region:219386-219386:1
so has part: feature:219386-219386:1:region

position:219386:1
position: 219386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219386-219386:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; C to U RNA editing (minor frequency); TCT(S) to TTT(F)
so part of: sequence
location: 219388
location: region:219388-219388:1
so has part: feature:219388-219388:1:region

position:219388:1
position: 219388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219388-219388:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; C to U RNA editing; CAT(H) to TAT(Y)
so part of: sequence
location: 219401
location: region:219401-219401:1
so has part: feature:219401-219401:1:region

position:219401:1
position: 219401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219401-219401:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; C to U RNA editing; CTC(L) to TTC(F)
so part of: sequence
location: 219404
location: region:219404-219404:1
so has part: feature:219404-219404:1:region

position:219404:1
position: 219404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219404-219404:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 219588
location: region:219588-219588:1
so has part: feature:219588-219588:1:region

position:219588:1
position: 219588
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219588-219588:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; C to U RNA editing (minor frequency); CCC(P) to TCC(S)
so part of: sequence
location: 219590
location: region:219590-219590:1
so has part: feature:219590-219590:1:region

position:219590:1
position: 219590
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219590-219590:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; C to U RNA editing; TCA(S) to TTA(L)
so part of: sequence
location: 219592
location: region:219592-219592:1
so has part: feature:219592-219592:1:region

position:219592:1
position: 219592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219592-219592:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; C to U RNA editing; CCA(P) to CTA(L)
so part of: sequence
location: 219601
location: region:219601-219601:1
so has part: feature:219601-219601:1:region

position:219601:1
position: 219601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219601-219601:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 219602
location: region:219602-219602:1
so has part: feature:219602-219602:1:region

position:219602:1
position: 219602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219602-219602:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; C to U RNA editing; TCT(S) to TTT(F)
so part of: sequence
location: 219604
location: region:219604-219604:1
so has part: feature:219604-219604:1:region

position:219604:1
position: 219604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219604-219604:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; C to U RNA editing; CCG(P) to TCG(S)
so part of: sequence
location: 219620
location: region:219620-219620:1
so has part: feature:219620-219620:1:region

position:219620:1
position: 219620
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219620-219620:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 219621
location: region:219621-219621:1
so has part: feature:219621-219621:1:region

position:219621:1
position: 219621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219621-219621:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 219657
location: region:219657-219657:1
so has part: feature:219657-219657:1:region

position:219657:1
position: 219657
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219657-219657:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; C to U RNA editing; CGG(R) to TGG(W)
so part of: sequence
location: 219668
location: region:219668-219668:1
so has part: feature:219668-219668:1:region

position:219668:1
position: 219668
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219668-219668:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; C to U RNA editing (minor frequency); CGA(R) to TGA(*)
so part of: sequence
location: 219683
location: region:219683-219683:1
so has part: feature:219683-219683:1:region

position:219683:1
position: 219683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219683-219683:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; C to U RNA editing (minor frequency); ACG(T) to ATG(M)
so part of: sequence
location: 219700
location: region:219700-219700:1
so has part: feature:219700-219700:1:region

position:219700:1
position: 219700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219700-219700:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: mttB; C to U RNA editing; TCG(S) to TTG(L)
so part of: sequence
location: 219706
location: region:219706-219706:1
so has part: feature:219706-219706:1:region

position:219706:1
position: 219706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219706-219706:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M216
so part of: sequence
location: complement(219803..219844)
location: region:219803-219844:-1
so has part: feature:219803-219844:-1:region

position:219803:-1
position: 219803
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:219844:-1
position: 219844
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219803-219844:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: rpl2; t-element (tRNA-like structure)
so part of: sequence
location: complement(219863..219906)
location: region:219863-219906:-1
so has part: feature:219863-219906:-1:region

position:219863:-1
position: 219863
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:219906:-1
position: 219906
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219863-219906:-1:region

DA397_mgp21
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
gene: rpl2
locus tag: DA397_mgp21
so part of: sequence
location: complement(219910..222610)
location: region:219910-222610:-1
so has part: feature:219910-222610:-1:exon
subclass of: SO_0000010
subclass of: SO_0000011

36335661
type: Gene
SIO_000068: ncbigene

position:219910:-1
position: 219910
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:222610:-1
position: 222610
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219910-222610:-1:exon

DA397_mgp21
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3702
gene: rpl2
locus tag: DA397_mgp21
exception: RNA editing
codon start: 1
product: ribosomal protein L2
translation: MRPGRARALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLLRRIDLKRSTSSMGIVESIEYDPNRSSQIALVRWIKGGCQKKMNTIEKFAPPRKILEPTTNTISGLFSFSFLPGKVDKRKVACFSPGLMAAYVVVGLPTGMPPLSSSKSAFASKGAGSTKTLVKDVFFSAFSSPKAKRETASLAFASSFGFPRIAVAGAKPAFFAPRMRQKVRGKSTFSLCEVQKGRTHSILWAHRIKGKAGLSWQSFRRQDTLGLVGAAGHKKSKPKTDQGNLPAKPIGERAKQLKALRGLRAKDGACKVDRAPVTYIIASHQLEAGKMVMNCDWSKPSTSSFLQSAQNDHPKPLFTV
SIO_010081: DA397_mgp21
subclass of: SO_0000673
so part of: DA397_mgp21
location: complement(join(219910..220042,221694..222610))
location: region:219910-222610:-1
so has part: feature:221694-222610:-1:exon
so has part: feature:219910-220042:-1:exon

YP_009472116.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:221694-222610:-1:exon

position:221694:-1
position: 221694
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:219910-220042:-1:exon

position:220042:-1
position: 220042
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

DA397_mgp21
type: Exon
subclass of: SO_0000147
RO_0002162: 3702
gene: rpl2
locus tag: DA397_mgp21
number: 2
SIO_010081: DA397_mgp21
subclass of: SO_0000673
so part of: DA397_mgp21
location: complement(219910..220042)
location: region:219910-220042:-1
so has part: feature:219910-220042:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:219910-220042:-1:exon

DA397_mgp21
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
gene: rpl2
locus tag: DA397_mgp21
note: cosRNA M159
SIO_010081: DA397_mgp21
subclass of: SO_0000673
so part of: DA397_mgp21
location: complement(221348..221371)
location: region:221348-221371:-1
so has part: feature:221348-221371:-1:exon

position:221348:-1
position: 221348
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:221371:-1
position: 221371
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:221348-221371:-1:exon

DA397_mgp21
type: Exon
subclass of: SO_0000147
RO_0002162: 3702
gene: rpl2
locus tag: DA397_mgp21
number: 1
SIO_010081: DA397_mgp21
subclass of: SO_0000673
so part of: DA397_mgp21
location: complement(221694..222610)
location: region:221694-222610:-1
so has part: feature:221694-222610:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:221694-222610:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: rpl2; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 221900
location: region:221900-221900:1
so has part: feature:221900-221900:1:region

position:221900:1
position: 221900
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:221900-221900:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M38
so part of: sequence
location: 222183..222204
location: region:222183-222204:1
so has part: feature:222183-222204:1:region

position:222183:1
position: 222183
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:222204:1
position: 222204
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:222183-222204:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: rpl2; C to U RNA editing (minor frequency); CCT(P) to TCT(S)
so part of: sequence
location: 222319
location: region:222319-222319:1
so has part: feature:222319-222319:1:region

position:222319:1
position: 222319
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:222319-222319:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M39
so part of: sequence
location: 222339..222362
location: region:222339-222362:1
so has part: feature:222339-222362:1:region

position:222339:1
position: 222339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:222362:1
position: 222362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:222339-222362:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: rpl2; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 222353
location: region:222353-222353:1
so has part: feature:222353-222353:1:region

position:222353:1
position: 222353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:222353-222353:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: rpl2; C to U RNA editing; CCA(P) to CTA(L)
so part of: sequence
location: 222399
location: region:222399-222399:1
so has part: feature:222399-222399:1:region

position:222399:1
position: 222399
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:222399-222399:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: HH-2
rpt type: inverted
so part of: sequence
location: 222608..222705
location: region:222608-222705:1
so has part: feature:222608-222705:1:region

position:222608:1
position: 222608
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:222705:1
position: 222705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:222608-222705:1:region

5'UTR
type: Five Prime UTR
subclass of: SO_0000204
RO_0002162: 3702
note: rpl2
so part of: sequence
location: complement(222611..222805)
location: region:222611-222805:-1
so has part: feature:222611-222805:-1:region

position:222611:-1
position: 222611
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:222805:-1
position: 222805
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:222611-222805:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: rpl2; alternative 5' transcript end (minor frequency)
so part of: sequence
location: 222725
location: region:222725-222725:1
so has part: feature:222725-222725:1:region

position:222725:1
position: 222725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:222725-222725:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: UU-1
rpt type: inverted
so part of: sequence
location: 223469..223531
location: region:223469-223531:1
so has part: feature:223469-223531:1:region

position:223469:1
position: 223469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:223531:1
position: 223531
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:223469-223531:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M40
so part of: sequence
location: 224240..224263
location: region:224240-224263:1
so has part: feature:224240-224263:1:region

position:224240:1
position: 224240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:224263:1
position: 224263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:224240-224263:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF160
so part of: sequence
location: 225603..226086
location: region:225603-226086:1
so has part: feature:225603-226086:1:region

position:225603:1
position: 225603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:226086:1
position: 226086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:225603-226086:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M160
so part of: sequence
location: complement(226125..226148)
location: region:226125-226148:-1
so has part: feature:226125-226148:-1:region

position:226125:-1
position: 226125
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:226148:-1
position: 226148
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:226125-226148:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF102B
so part of: sequence
location: complement(226200..226568)
location: region:226200-226568:-1
so has part: feature:226200-226568:-1:region

position:226200:-1
position: 226200
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:226568:-1
position: 226568
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:226200-226568:-1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M161
so part of: sequence
location: complement(226303..226326)
location: region:226303-226326:-1
so has part: feature:226303-226326:-1:region

position:226303:-1
position: 226303
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:226326:-1
position: 226326
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:226303-226326:-1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M41
so part of: sequence
location: 226464..226487
location: region:226464-226487:1
so has part: feature:226464-226487:1:region

position:226464:1
position: 226464
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:226487:1
position: 226487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:226464-226487:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M162
so part of: sequence
location: complement(228254..228270)
location: region:228254-228270:-1
so has part: feature:228254-228270:-1:region

position:228254:-1
position: 228254
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:228270:-1
position: 228270
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:228254-228270:-1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M94
so part of: sequence
location: 229467..229483
location: region:229467-229483:1
so has part: feature:229467-229483:1:region

position:229467:1
position: 229467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:229483:1
position: 229483
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:229467-229483:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF109
so part of: sequence
location: 229740..230069
location: region:229740-230069:1
so has part: feature:229740-230069:1:region

position:229740:1
position: 229740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:230069:1
position: 230069
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:229740-230069:1:region

DA397_mgp34
type: Exon
subclass of: SO_0000147
RO_0002162: 3702
gene: nad1
locus tag: DA397_mgp34
number: 4
SIO_010081: DA397_mgp34
subclass of: SO_0000673
so part of: DA397_mgp34
location: 230304..230362
location: region:230304-230362:1
so has part: feature:230304-230362:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:230304-230362:1:exon

DA397_mgp34
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad1
locus tag: DA397_mgp34
note: nad1; C to U RNA editing; TCT(S) to TTT(F)
SIO_010081: DA397_mgp34
subclass of: SO_0000673
so part of: DA397_mgp34
location: 230317
location: region:230317-230317:1
so has part: feature:230317-230317:1:exon

position:230317:1
position: 230317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:230317-230317:1:exon

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M163
so part of: sequence
location: complement(230770..230793)
location: region:230770-230793:-1
so has part: feature:230770-230793:-1:region

position:230770:-1
position: 230770
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:230793:-1
position: 230793
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:230770-230793:-1:region

DA397_mgp20
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
gene: matR
locus tag: DA397_mgp20
so part of: sequence
location: 231089..233059
location: region:231089-233059:1
so has part: feature:231089-233059:1:exon
subclass of: SO_0000010
subclass of: SO_0000011

36335662
type: Gene
SIO_000068: ncbigene

position:231089:1
position: 231089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:233059:1
position: 233059
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:231089-233059:1:exon

DA397_mgp20
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3702
gene: matR
locus tag: DA397_mgp20
exception: RNA editing
codon start: 1
product: maturase
translation: MKEAIRMVLESIYDPEFPDTSHFRSGQGCHSVLRRIKEEWGISRWFLEFDIRKCFHTIDRHRLIQILKEEIDDPKFFYSIQKVFSAGRLVGVERGPYSVPHSVLLSALLGNIYLHKLDQEIGRIRQKYEIPIVQRVRLVLLRTGRRIDDQENPGEEASFNAPQDNRAIIVGSVKSMQRKAAFHSLVSSWHTPPTSTLRLRGDQKRPFVFPPSSALAVFLNKPSSLLCAAFLIEAAGLTPKAEFYGGERCNNNWAMRDLLKYCKRKGLLIELGGEAILVIRSERGLARKQAPLKTHYLIRICYARYADDLLLGIVGAVELLIEIQKRIAHFLQSGLNLWVGSAGSTTIAARSTVEFLGTVIREVPPRTTPIQFLRELEKRLRVKHRIHITACHLRSAIHSKFRNLGDSIPIKQLTKGMSKTGSLQDGVQLAETLGTAGVRSPQVSVLWGTVKHIRQGSRGISFLHSSGRSNASSDVQQVVSRSGTHARKLSLYTPPGRKAAGEGGGHWAGSISSEFPIKIEAPIKKILRRLRDRGIISRRRPWPIHVACLTNVSDEDIVNWFAGIAISLLSYYRCCDNLYQVRTIVDYQIRWSAIFTLAHKHKSSARNIILKYSKDLNIVNQEGGKILAEFPNSIELGKLGPGQDLNKKEHSTTSLV
SIO_010081: DA397_mgp20
subclass of: SO_0000673
so part of: DA397_mgp20
location: 231089..233059
location: region:231089-233059:1
so has part: feature:231089-233059:1:exon

YP_009472117.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:231089-233059:1:exon

DA397_mgp20
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: matR
locus tag: DA397_mgp20
note: matR; C to U RNA editing; CCA(P) to CTA(L)
SIO_010081: DA397_mgp20
subclass of: SO_0000673
so part of: DA397_mgp20
location: 231414
location: region:231414-231414:1
so has part: feature:231414-231414:1:exon

position:231414:1
position: 231414
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:231414-231414:1:exon

DA397_mgp20
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: matR
locus tag: DA397_mgp20
note: matR; C to U RNA editing (minor frequency); CAG(Q) to TAG(*)
SIO_010081: DA397_mgp20
subclass of: SO_0000673
so part of: DA397_mgp20
location: 231488
location: region:231488-231488:1
so has part: feature:231488-231488:1:exon

position:231488:1
position: 231488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:231488-231488:1:exon

DA397_mgp20
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: matR
locus tag: DA397_mgp20
note: matR; C to U RNA editing; TCG(S) to TTG(L)
SIO_010081: DA397_mgp20
subclass of: SO_0000673
so part of: DA397_mgp20
location: 231501
location: region:231501-231501:1
so has part: feature:231501-231501:1:exon

position:231501:1
position: 231501
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:231501-231501:1:exon

DA397_mgp20
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: matR
locus tag: DA397_mgp20
note: matR; C to U RNA editing (minor frequency); TCG(S) to TTG(L)
SIO_010081: DA397_mgp20
subclass of: SO_0000673
so part of: DA397_mgp20
location: 231648
location: region:231648-231648:1
so has part: feature:231648-231648:1:exon

position:231648:1
position: 231648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:231648-231648:1:exon

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M164
so part of: sequence
location: complement(232025..232048)
location: region:232025-232048:-1
so has part: feature:232025-232048:-1:region

position:232025:-1
position: 232025
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:232048:-1
position: 232048
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:232025-232048:-1:region

DA397_mgp20
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: matR
locus tag: DA397_mgp20
note: matR; C to U RNA editing (minor frequency); synonymous
SIO_010081: DA397_mgp20
subclass of: SO_0000673
so part of: DA397_mgp20
location: 232435
location: region:232435-232435:1
so has part: feature:232435-232435:1:exon

position:232435:1
position: 232435
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:232435-232435:1:exon

DA397_mgp20
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: matR
locus tag: DA397_mgp20
note: matR; C to U RNA editing (minor frequency); CGG(R) to TGG(W)
SIO_010081: DA397_mgp20
subclass of: SO_0000673
so part of: DA397_mgp20
location: 232448
location: region:232448-232448:1
so has part: feature:232448-232448:1:exon

position:232448:1
position: 232448
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:232448-232448:1:exon

DA397_mgp20
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
gene: matR
locus tag: DA397_mgp20
note: cosRNA M95
SIO_010081: DA397_mgp20
subclass of: SO_0000673
so part of: DA397_mgp20
location: 232490..232513
location: region:232490-232513:1
so has part: feature:232490-232513:1:exon

position:232490:1
position: 232490
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:232513:1
position: 232513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:232490-232513:1:exon

DA397_mgp20
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: matR
locus tag: DA397_mgp20
note: matR; C to U RNA editing (minor frequency); synonymous
SIO_010081: DA397_mgp20
subclass of: SO_0000673
so part of: DA397_mgp20
location: 232633
location: region:232633-232633:1
so has part: feature:232633-232633:1:exon

position:232633:1
position: 232633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:232633-232633:1:exon

DA397_mgp20
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: matR
locus tag: DA397_mgp20
note: matR; C to U RNA editing (minor frequency); synonymous
SIO_010081: DA397_mgp20
subclass of: SO_0000673
so part of: DA397_mgp20
location: 232636
location: region:232636-232636:1
so has part: feature:232636-232636:1:exon

position:232636:1
position: 232636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:232636-232636:1:exon

DA397_mgp20
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: matR
locus tag: DA397_mgp20
note: matR; C to U RNA editing; TCC(S) to TTC(F)
SIO_010081: DA397_mgp20
subclass of: SO_0000673
so part of: DA397_mgp20
location: 232770
location: region:232770-232770:1
so has part: feature:232770-232770:1:exon

position:232770:1
position: 232770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:232770-232770:1:exon

DA397_mgp20
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: matR
locus tag: DA397_mgp20
note: matR; C to U RNA editing (minor frequency); synonymous
SIO_010081: DA397_mgp20
subclass of: SO_0000673
so part of: DA397_mgp20
location: 232771
location: region:232771-232771:1
so has part: feature:232771-232771:1:exon

position:232771:1
position: 232771
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:232771-232771:1:exon

DA397_mgp20
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: matR
locus tag: DA397_mgp20
note: matR; C to U RNA editing; CCT(P) to CTT(L)
SIO_010081: DA397_mgp20
subclass of: SO_0000673
so part of: DA397_mgp20
location: 232791
location: region:232791-232791:1
so has part: feature:232791-232791:1:exon

position:232791:1
position: 232791
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:232791-232791:1:exon

DA397_mgp20
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: matR
locus tag: DA397_mgp20
note: matR; C to U RNA editing; CGC(R) to TGC(C)
SIO_010081: DA397_mgp20
subclass of: SO_0000673
so part of: DA397_mgp20
location: 232811
location: region:232811-232811:1
so has part: feature:232811-232811:1:exon

position:232811:1
position: 232811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:232811-232811:1:exon

DA397_mgp20
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: matR
locus tag: DA397_mgp20
note: matR; C to U RNA editing; CAC(H) to TAC(Y)
SIO_010081: DA397_mgp20
subclass of: SO_0000673
so part of: DA397_mgp20
location: 232847
location: region:232847-232847:1
so has part: feature:232847-232847:1:exon

position:232847:1
position: 232847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:232847-232847:1:exon

DA397_mgp20
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: matR
locus tag: DA397_mgp20
note: matR; C to U RNA editing; TCA(S) to TTA(L)
SIO_010081: DA397_mgp20
subclass of: SO_0000673
so part of: DA397_mgp20
location: 232935
location: region:232935-232935:1
so has part: feature:232935-232935:1:exon

position:232935:1
position: 232935
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:232935-232935:1:exon

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M165
so part of: sequence
location: complement(232958..232981)
location: region:232958-232981:-1
so has part: feature:232958-232981:-1:region

position:232958:-1
position: 232958
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:232981:-1
position: 232981
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:232958-232981:-1:region

DA397_mgp20
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: matR
locus tag: DA397_mgp20
note: matR; C to U RNA editing (minor frequency); synonymous
SIO_010081: DA397_mgp20
subclass of: SO_0000673
so part of: DA397_mgp20
location: 232966
location: region:232966-232966:1
so has part: feature:232966-232966:1:exon

position:232966:1
position: 232966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:232966-232966:1:exon

DA397_mgp20
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: matR
locus tag: DA397_mgp20
note: matR; C to U RNA editing (minor frequency); CCC(P) to CTC(L)
SIO_010081: DA397_mgp20
subclass of: SO_0000673
so part of: DA397_mgp20
location: 232980
location: region:232980-232980:1
so has part: feature:232980-232980:1:exon

position:232980:1
position: 232980
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:232980-232980:1:exon

DA397_mgp34
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
gene: nad1
locus tag: DA397_mgp34
note: CC-2
rpt type: direct
SIO_010081: DA397_mgp34
subclass of: SO_0000673
so part of: DA397_mgp34
location: 233646..233789
location: region:233646-233789:1
so has part: feature:233646-233789:1:exon

position:233646:1
position: 233646
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:233789:1
position: 233789
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:233646-233789:1:exon

DA397_mgp34
type: Exon
subclass of: SO_0000147
RO_0002162: 3702
gene: nad1
locus tag: DA397_mgp34
number: 5
SIO_010081: DA397_mgp34
subclass of: SO_0000673
so part of: DA397_mgp34
location: 233874..234132
location: region:233874-234132:1
so has part: feature:233874-234132:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:233874-234132:1:exon

DA397_mgp34
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad1
locus tag: DA397_mgp34
note: nad1; C to U RNA editing; CCA(P) to CTA(L)
SIO_010081: DA397_mgp34
subclass of: SO_0000673
so part of: DA397_mgp34
location: 233879
location: region:233879-233879:1
so has part: feature:233879-233879:1:exon

position:233879:1
position: 233879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:233879-233879:1:exon

DA397_mgp34
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad1
locus tag: DA397_mgp34
note: nad1; C to U RNA editing; CCA(P) to CTA(L)
SIO_010081: DA397_mgp34
subclass of: SO_0000673
so part of: DA397_mgp34
location: 233897
location: region:233897-233897:1
so has part: feature:233897-233897:1:exon

position:233897:1
position: 233897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:233897-233897:1:exon

DA397_mgp34
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad1
locus tag: DA397_mgp34
note: nad1; C to U RNA editing; CCG(P) to CTG(L)
SIO_010081: DA397_mgp34
subclass of: SO_0000673
so part of: DA397_mgp34
location: 233909
location: region:233909-233909:1
so has part: feature:233909-233909:1:exon

position:233909:1
position: 233909
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:233909-233909:1:exon

DA397_mgp34
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad1
locus tag: DA397_mgp34
note: nad1; C to U RNA editing; CTC(L) to TTC(F)
SIO_010081: DA397_mgp34
subclass of: SO_0000673
so part of: DA397_mgp34
location: 233977
location: region:233977-233977:1
so has part: feature:233977-233977:1:exon

position:233977:1
position: 233977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:233977-233977:1:exon

DA397_mgp34
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad1
locus tag: DA397_mgp34
note: nad1; C to U RNA editing (minor frequency); synonymous
SIO_010081: DA397_mgp34
subclass of: SO_0000673
so part of: DA397_mgp34
location: 234003
location: region:234003-234003:1
so has part: feature:234003-234003:1:exon

position:234003:1
position: 234003
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:234003-234003:1:exon

DA397_mgp34
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
gene: nad1
locus tag: DA397_mgp34
note: SS-2
rpt type: direct
SIO_010081: DA397_mgp34
subclass of: SO_0000673
so part of: DA397_mgp34
location: 234045..234124
location: region:234045-234124:1
so has part: feature:234045-234124:1:exon

position:234045:1
position: 234045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:234124:1
position: 234124
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:234045-234124:1:exon

DA397_mgp34
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad1
locus tag: DA397_mgp34
note: nad1; C to U RNA editing; CGG(R) to TGG(W)
SIO_010081: DA397_mgp34
subclass of: SO_0000673
so part of: DA397_mgp34
location: 234052
location: region:234052-234052:1
so has part: feature:234052-234052:1:exon

position:234052:1
position: 234052
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:234052-234052:1:exon

3'UTR
type: Three Prime UTR
subclass of: SO_0000205
RO_0002162: 3702
note: nad1
so part of: sequence
location: 234133..234221
location: region:234133-234221:1
so has part: feature:234133-234221:1:region

position:234133:1
position: 234133
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:234221:1
position: 234221
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:234133-234221:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: PP-1
so part of: sequence
location: 234168..234228
location: region:234168-234228:1
so has part: feature:234168-234228:1:region

position:234168:1
position: 234168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:234228:1
position: 234228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:234168-234228:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: M-1
rpt type: inverted
so part of: sequence
location: 234172..234429
location: region:234172-234429:1
so has part: feature:234172-234429:1:region

position:234172:1
position: 234172
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:234429:1
position: 234429
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:234172-234429:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M96
so part of: sequence
location: 234204..234221
location: region:234204-234221:1
so has part: feature:234204-234221:1:region

position:234204:1
position: 234204
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:234204-234221:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M207
so part of: sequence
location: 234204..234220
location: region:234204-234220:1
so has part: feature:234204-234220:1:region

position:234220:1
position: 234220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:234204-234220:1:region

5'UTR
type: Five Prime UTR
subclass of: SO_0000204
RO_0002162: 3702
note: nad5
so part of: sequence
location: 234281..234351
location: region:234281-234351:1
so has part: feature:234281-234351:1:region

position:234281:1
position: 234281
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:234351:1
position: 234351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:234281-234351:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad5; alternative 5' transcript end
so part of: sequence
location: 234331
location: region:234331-234331:1
so has part: feature:234331-234331:1:region

position:234331:1
position: 234331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:234331-234331:1:region

DA397_mgp37
type: Exon
subclass of: SO_0000147
RO_0002162: 3702
gene: nad5
locus tag: DA397_mgp37
number: 1
SIO_010081: DA397_mgp37
subclass of: SO_0000673
so part of: DA397_mgp37
location: 234352..234581
location: region:234352-234581:1
so has part: feature:234352-234581:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:234352-234581:1:exon

DA397_mgp37
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
gene: nad5
locus tag: DA397_mgp37
note: RR-1
SIO_010081: DA397_mgp37
subclass of: SO_0000673
so part of: DA397_mgp37
location: 234413..234466
location: region:234413-234466:1
so has part: feature:234413-234466:1:exon

position:234413:1
position: 234413
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:234466:1
position: 234466
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:234413-234466:1:exon

DA397_mgp37
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad5
locus tag: DA397_mgp37
note: nad5; C to U RNA editing; CCG(P) to CTG(L)
SIO_010081: DA397_mgp37
subclass of: SO_0000673
so part of: DA397_mgp37
location: 234506
location: region:234506-234506:1
so has part: feature:234506-234506:1:exon

position:234506:1
position: 234506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:234506-234506:1:exon

DA397_mgp37
type: Exon
subclass of: SO_0000147
RO_0002162: 3702
gene: nad5
locus tag: DA397_mgp37
number: 2
SIO_010081: DA397_mgp37
subclass of: SO_0000673
so part of: DA397_mgp37
location: 235413..236628
location: region:235413-236628:1
so has part: feature:235413-236628:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:235413-236628:1:exon

DA397_mgp37
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad5
locus tag: DA397_mgp37
note: nad5; C to U RNA editing; CCG(P) to CTG(X)
SIO_010081: DA397_mgp37
subclass of: SO_0000673
so part of: DA397_mgp37
location: 235424
location: region:235424-235424:1
so has part: feature:235424-235424:1:exon

position:235424:1
position: 235424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:235424-235424:1:exon

DA397_mgp37
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad5
locus tag: DA397_mgp37
note: nad5; C to U RNA editing; TCC(S) to TTC(F)
SIO_010081: DA397_mgp37
subclass of: SO_0000673
so part of: DA397_mgp37
location: 235454
location: region:235454-235454:1
so has part: feature:235454-235454:1:exon

position:235454:1
position: 235454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:235454-235454:1:exon

DA397_mgp37
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad5
locus tag: DA397_mgp37
note: nad5; C to U RNA editing; CTT(L) to TTT(F)
SIO_010081: DA397_mgp37
subclass of: SO_0000673
so part of: DA397_mgp37
location: 235540
location: region:235540-235540:1
so has part: feature:235540-235540:1:exon

position:235540:1
position: 235540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:235540-235540:1:exon

DA397_mgp37
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad5
locus tag: DA397_mgp37
note: nad5; C to U RNA editing; CCA(P) to CTA(L)
SIO_010081: DA397_mgp37
subclass of: SO_0000673
so part of: DA397_mgp37
location: 235556
location: region:235556-235556:1
so has part: feature:235556-235556:1:exon

position:235556:1
position: 235556
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:235556-235556:1:exon

DA397_mgp37
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad5
locus tag: DA397_mgp37
note: nad5; C to U RNA editing; TCT(S) to TTT(F)
SIO_010081: DA397_mgp37
subclass of: SO_0000673
so part of: DA397_mgp37
location: 235580
location: region:235580-235580:1
so has part: feature:235580-235580:1:exon

position:235580:1
position: 235580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:235580-235580:1:exon

DA397_mgp37
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad5
locus tag: DA397_mgp37
note: nad5; C to U RNA editing; ACA(T) to ATA(I)
SIO_010081: DA397_mgp37
subclass of: SO_0000673
so part of: DA397_mgp37
location: 235676
location: region:235676-235676:1
so has part: feature:235676-235676:1:exon

position:235676:1
position: 235676
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:235676-235676:1:exon

DA397_mgp37
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad5
locus tag: DA397_mgp37
note: nad5; C to U RNA editing; TCG(S) to TTG(L)
SIO_010081: DA397_mgp37
subclass of: SO_0000673
so part of: DA397_mgp37
location: 235730
location: region:235730-235730:1
so has part: feature:235730-235730:1:exon

position:235730:1
position: 235730
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:235730-235730:1:exon

DA397_mgp37
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad5
locus tag: DA397_mgp37
note: nad5; C to U RNA editing; CGT(R) to TGT(C)
SIO_010081: DA397_mgp37
subclass of: SO_0000673
so part of: DA397_mgp37
location: 235735
location: region:235735-235735:1
so has part: feature:235735-235735:1:exon

position:235735:1
position: 235735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:235735-235735:1:exon

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M166
so part of: sequence
location: complement(235736..235753)
location: region:235736-235753:-1
so has part: feature:235736-235753:-1:region

position:235736:-1
position: 235736
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:235753:-1
position: 235753
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:235736-235753:-1:region

DA397_mgp37
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad5
locus tag: DA397_mgp37
note: nad5; C to U RNA editing; CGT(R) to TGT(C)
SIO_010081: DA397_mgp37
subclass of: SO_0000673
so part of: DA397_mgp37
location: 235780
location: region:235780-235780:1
so has part: feature:235780-235780:1:exon

position:235780:1
position: 235780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:235780-235780:1:exon

DA397_mgp37
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad5
locus tag: DA397_mgp37
note: nad5; C to U RNA editing; GCC(A) to GTC(V)
SIO_010081: DA397_mgp37
subclass of: SO_0000673
so part of: DA397_mgp37
location: 235790
location: region:235790-235790:1
so has part: feature:235790-235790:1:exon

position:235790:1
position: 235790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:235790-235790:1:exon

DA397_mgp37
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad5
locus tag: DA397_mgp37
note: nad5; C to U RNA editing; synonymous
SIO_010081: DA397_mgp37
subclass of: SO_0000673
so part of: DA397_mgp37
location: 235791
location: region:235791-235791:1
so has part: feature:235791-235791:1:exon

position:235791:1
position: 235791
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:235791-235791:1:exon

DA397_mgp37
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad5
locus tag: DA397_mgp37
note: nad5; C to U RNA editing; TCT(S) to TTT(F)
SIO_010081: DA397_mgp37
subclass of: SO_0000673
so part of: DA397_mgp37
location: 235811
location: region:235811-235811:1
so has part: feature:235811-235811:1:exon

position:235811:1
position: 235811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:235811-235811:1:exon

DA397_mgp37
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad5
locus tag: DA397_mgp37
note: nad5; C to U RNA editing; CTT(L) to TTT(F)
SIO_010081: DA397_mgp37
subclass of: SO_0000673
so part of: DA397_mgp37
location: 235858
location: region:235858-235858:1
so has part: feature:235858-235858:1:exon

position:235858:1
position: 235858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:235858-235858:1:exon

DA397_mgp37
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad5
locus tag: DA397_mgp37
note: nad5; C to U RNA editing; TCG(S) to TTG(L)
SIO_010081: DA397_mgp37
subclass of: SO_0000673
so part of: DA397_mgp37
location: 235895
location: region:235895-235895:1
so has part: feature:235895-235895:1:exon

position:235895:1
position: 235895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:235895-235895:1:exon

DA397_mgp37
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad5
locus tag: DA397_mgp37
note: nad5; C to U RNA editing; TCA(S) to TTA(L)
SIO_010081: DA397_mgp37
subclass of: SO_0000673
so part of: DA397_mgp37
location: 235907
location: region:235907-235907:1
so has part: feature:235907-235907:1:exon

position:235907:1
position: 235907
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:235907-235907:1:exon

DA397_mgp37
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad5
locus tag: DA397_mgp37
note: nad5; C to U RNA editing; TCG(S) to TTG(L)
SIO_010081: DA397_mgp37
subclass of: SO_0000673
so part of: DA397_mgp37
location: 235946
location: region:235946-235946:1
so has part: feature:235946-235946:1:exon

position:235946:1
position: 235946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:235946-235946:1:exon

DA397_mgp37
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad5
locus tag: DA397_mgp37
note: nad5; C to U RNA editing (minor frequency); synonymous
SIO_010081: DA397_mgp37
subclass of: SO_0000673
so part of: DA397_mgp37
location: 235983
location: region:235983-235983:1
so has part: feature:235983-235983:1:exon

position:235983:1
position: 235983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:235983-235983:1:exon

DA397_mgp37
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad5
locus tag: DA397_mgp37
note: nad5; C to U RNA editing; CCA(P) to TCA(S)
SIO_010081: DA397_mgp37
subclass of: SO_0000673
so part of: DA397_mgp37
location: 236017
location: region:236017-236017:1
so has part: feature:236017-236017:1:exon

position:236017:1
position: 236017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:236017-236017:1:exon

DA397_mgp37
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad5
locus tag: DA397_mgp37
note: nad5; C to U RNA editing; TCT(S) to TTT(F)
SIO_010081: DA397_mgp37
subclass of: SO_0000673
so part of: DA397_mgp37
location: 236045
location: region:236045-236045:1
so has part: feature:236045-236045:1:exon

position:236045:1
position: 236045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:236045-236045:1:exon

DA397_mgp37
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad5
locus tag: DA397_mgp37
note: nad5; C to U RNA editing; ACG(T) to ATG(M)
SIO_010081: DA397_mgp37
subclass of: SO_0000673
so part of: DA397_mgp37
location: 236057
location: region:236057-236057:1
so has part: feature:236057-236057:1:exon

position:236057:1
position: 236057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:236057-236057:1:exon

DA397_mgp37
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad5
locus tag: DA397_mgp37
note: nad5; C to U RNA editing (minor frequency); synonymous
SIO_010081: DA397_mgp37
subclass of: SO_0000673
so part of: DA397_mgp37
location: 236469
location: region:236469-236469:1
so has part: feature:236469-236469:1:exon

position:236469:1
position: 236469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:236469-236469:1:exon

DA397_mgp37
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
gene: nad5
locus tag: DA397_mgp37
note: nad5; C to U RNA editing (minor frequency); synonymous
SIO_010081: DA397_mgp37
subclass of: SO_0000673
so part of: DA397_mgp37
location: 236500
location: region:236500-236500:1
so has part: feature:236500-236500:1:exon

position:236500:1
position: 236500
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:236500-236500:1:exon

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M217
so part of: sequence
location: complement(236813..236835)
location: region:236813-236835:-1
so has part: feature:236813-236835:-1:region

position:236813:-1
position: 236813
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:236835:-1
position: 236835
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:236813-236835:-1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M97
so part of: sequence
location: 237353..237373
location: region:237353-237373:1
so has part: feature:237353-237373:1:region

position:237353:1
position: 237353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:237373:1
position: 237373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:237353-237373:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: TT-1
rpt type: inverted
so part of: sequence
location: 238391..238445
location: region:238391-238445:1
so has part: feature:238391-238445:1:region

position:238391:1
position: 238391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:238445:1
position: 238445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:238391-238445:1:region

3'UTR
type: Three Prime UTR
subclass of: SO_0000205
RO_0002162: 3702
note: nad7
so part of: sequence
location: complement(239198..239249)
location: region:239198-239249:-1
so has part: feature:239198-239249:-1:region

position:239198:-1
position: 239198
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:239249:-1
position: 239249
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:239198-239249:-1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M218
so part of: sequence
location: complement(239198..239241)
location: region:239198-239241:-1
so has part: feature:239198-239241:-1:region

position:239241:-1
position: 239241
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:239198-239241:-1:region

DA397_mgp19
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
gene: nad7
locus tag: DA397_mgp19
so part of: sequence
location: complement(239250..245330)
location: region:239250-245330:-1
so has part: feature:239250-245330:-1:exon
subclass of: SO_0000010
subclass of: SO_0000011

36335663
type: Gene
SIO_000068: ncbigene

position:239250:-1
position: 239250
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:245330:-1
position: 245330
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:239250-245330:-1:exon

DA397_mgp19
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3702
gene: nad7
locus tag: DA397_mgp19
exception: RNA editing
codon start: 1
product: NADH dehydrogenase subunit 7
translation: MTTRKRQIKNFTLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMAQEHAYSLAVEKLLNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMDVGALTPFLWAFEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCRDIDSFTQQFASRIDELEEMLTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGSGVCWDLRRAAPYDVYDQLDFDVPVGTRGDCYDRYCIRIEEMRQSLRIIVQCLNQMPSGMIKADDRKLCPPSRCRMKLSMESLIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMSKHHMLADVVTIIGTQDIVFGEVDR
SIO_010081: DA397_mgp19
subclass of: SO_0000673
so part of: DA397_mgp19
location: complement(join(239250..239511,241328..241571,242625..243091,244155..244223,245188..245330))
location: region:239250-245330:-1
so has part: feature:245188-245330:-1:exon
so has part: feature:244155-244223:-1:exon
so has part: feature:242625-243091:-1:exon
so has part: feature:241328-241571:-1:exon
so has part: feature:239250-239511:-1:exon

YP_009472118.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:245188-245330:-1:exon

position:245188:-1
position: 245188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:244155-244223:-1:exon

position:244155:-1
position: 244155
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:244223:-1
position: 244223
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:242625-243091:-1:exon

position:242625:-1
position: 242625
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:243091:-1
position: 243091
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:241328-241571:-1:exon

position:241328:-1
position: 241328
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:241571:-1
position: 241571
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:239250-239511:-1:exon

position:239511:-1
position: 239511
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

DA397_mgp19
type: Exon
subclass of: SO_0000147
RO_0002162: 3702
gene: nad7
locus tag: DA397_mgp19
number: 5
SIO_010081: DA397_mgp19
subclass of: SO_0000673
so part of: DA397_mgp19
location: complement(239250..239511)
location: region:239250-239511:-1
so has part: feature:239250-239511:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:239250-239511:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad7; C to U RNA editing; synonymous
so part of: sequence
location: 239298
location: region:239298-239298:1
so has part: feature:239298-239298:1:region

position:239298:1
position: 239298
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:239298-239298:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad7; C to U RNA editing; CCA(P) to CTA(L)
so part of: sequence
location: 239311
location: region:239311-239311:1
so has part: feature:239311-239311:1:region

position:239311:1
position: 239311
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:239311-239311:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad7; C to U RNA editing; TCT(S) to TTT(F)
so part of: sequence
location: 239332
location: region:239332-239332:1
so has part: feature:239332-239332:1:region

position:239332:1
position: 239332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:239332-239332:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad7; C to U RNA editing; TCA(S) to TTA(L)
so part of: sequence
location: 239347
location: region:239347-239347:1
so has part: feature:239347-239347:1:region

position:239347:1
position: 239347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:239347-239347:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad7; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 239352
location: region:239352-239352:1
so has part: feature:239352-239352:1:region

position:239352:1
position: 239352
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:239352-239352:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad7; C to U RNA editing; TCT(S) to TTT(F)
so part of: sequence
location: 239356
location: region:239356-239356:1
so has part: feature:239356-239356:1:region

position:239356:1
position: 239356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:239356-239356:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad7; C to U RNA editing; CGT(R) to TGT(C)
so part of: sequence
location: 239378
location: region:239378-239378:1
so has part: feature:239378-239378:1:region

position:239378:1
position: 239378
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:239378-239378:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad7; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 239385
location: region:239385-239385:1
so has part: feature:239385-239385:1:region

position:239385:1
position: 239385
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:239385-239385:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad7; C to U RNA editing (minor frequency); ACC(T) to ATC(I)
so part of: sequence
location: 239449
location: region:239449-239449:1
so has part: feature:239449-239449:1:region

position:239449:1
position: 239449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:239449-239449:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad7; C to U RNA editing; synonymous
so part of: sequence
location: 239472
location: region:239472-239472:1
so has part: feature:239472-239472:1:region

position:239472:1
position: 239472
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:239472-239472:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad7; C to U RNA editing; TCA(S) to TTA(L)
so part of: sequence
location: 239509
location: region:239509-239509:1
so has part: feature:239509-239509:1:region

position:239509:1
position: 239509
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:239509-239509:1:region

DA397_mgp19
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
gene: nad7
locus tag: DA397_mgp19
note: cosRNA M167
SIO_010081: DA397_mgp19
subclass of: SO_0000673
so part of: DA397_mgp19
location: complement(239667..239690)
location: region:239667-239690:-1
so has part: feature:239667-239690:-1:exon

position:239667:-1
position: 239667
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:239690:-1
position: 239690
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:239667-239690:-1:exon

DA397_mgp19
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
gene: nad7
locus tag: DA397_mgp19
note: cosRNA M168
SIO_010081: DA397_mgp19
subclass of: SO_0000673
so part of: DA397_mgp19
location: complement(239944..239967)
location: region:239944-239967:-1
so has part: feature:239944-239967:-1:exon

position:239944:-1
position: 239944
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:239967:-1
position: 239967
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:239944-239967:-1:exon

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M42
so part of: sequence
location: 241026..241049
location: region:241026-241049:1
so has part: feature:241026-241049:1:region

position:241026:1
position: 241026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:241049:1
position: 241049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:241026-241049:1:region

DA397_mgp19
type: Exon
subclass of: SO_0000147
RO_0002162: 3702
gene: nad7
locus tag: DA397_mgp19
number: 4
SIO_010081: DA397_mgp19
subclass of: SO_0000673
so part of: DA397_mgp19
location: complement(241328..241571)
location: region:241328-241571:-1
so has part: feature:241328-241571:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:241328-241571:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad7; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 241341
location: region:241341-241341:1
so has part: feature:241341-241341:1:region

position:241341:1
position: 241341
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:241341-241341:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad7; C to U RNA editing; synonymous
so part of: sequence
location: 241456
location: region:241456-241456:1
so has part: feature:241456-241456:1:region

position:241456:1
position: 241456
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:241456-241456:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad7; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 241462
location: region:241462-241462:1
so has part: feature:241462-241462:1:region

position:241462:1
position: 241462
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:241462-241462:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad7; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 241468
location: region:241468-241468:1
so has part: feature:241468-241468:1:region

position:241468:1
position: 241468
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:241468-241468:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad7; C to U RNA editing; CGC(R) to TGC(C)
so part of: sequence
location: 241482
location: region:241482-241482:1
so has part: feature:241482-241482:1:region

position:241482:1
position: 241482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:241482-241482:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad7; C to U RNA editing; CTT(L) to TTT(F)
so part of: sequence
location: 241512
location: region:241512-241512:1
so has part: feature:241512-241512:1:region

position:241512:1
position: 241512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:241512-241512:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad7; C to U RNA editing; TCG(S) to TTG(L)
so part of: sequence
location: 241517
location: region:241517-241517:1
so has part: feature:241517-241517:1:region

position:241517:1
position: 241517
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:241517-241517:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad7; C to U RNA editing; CAT(H) to TAT(Y)
so part of: sequence
location: 241527
location: region:241527-241527:1
so has part: feature:241527-241527:1:region

position:241527:1
position: 241527
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:241527-241527:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad7; C to U RNA editing; TCG(S) to TTG(L)
so part of: sequence
location: 241553
location: region:241553-241553:1
so has part: feature:241553-241553:1:region

position:241553:1
position: 241553
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:241553-241553:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M43
so part of: sequence
location: 241575..241589
location: region:241575-241589:1
so has part: feature:241575-241589:1:region

position:241575:1
position: 241575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:241589:1
position: 241589
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:241575-241589:1:region

DA397_mgp19
type: Exon
subclass of: SO_0000147
RO_0002162: 3702
gene: nad7
locus tag: DA397_mgp19
number: 3
SIO_010081: DA397_mgp19
subclass of: SO_0000673
so part of: DA397_mgp19
location: complement(242625..243091)
location: region:242625-243091:-1
so has part: feature:242625-243091:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:242625-243091:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad7; C to U RNA editing; CCA(P) to TCA(S)
so part of: sequence
location: 242625
location: region:242625-242625:1
so has part: feature:242625-242625:1:region

position:242625:1
position: 242625
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:242625-242625:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad7; C to U RNA editing; TCA(S) to TTA(L)
so part of: sequence
location: 242726
location: region:242726-242726:1
so has part: feature:242726-242726:1:region

position:242726:1
position: 242726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:242726-242726:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad7; C to U RNA editing; TCA(S) to TTA(L)
so part of: sequence
location: 242960
location: region:242960-242960:1
so has part: feature:242960-242960:1:region

position:242960:1
position: 242960
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:242960-242960:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad7; C to U RNA editing; TCA(S) to TTA(L)
so part of: sequence
location: 242969
location: region:242969-242969:1
so has part: feature:242969-242969:1:region

position:242969:1
position: 242969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:242969-242969:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad7; C to U RNA editing; CGT(R) to TGT(C)
so part of: sequence
location: 242988
location: region:242988-242988:1
so has part: feature:242988-242988:1:region

position:242988:1
position: 242988
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:242988-242988:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad7; C to U RNA editing (minor frequency); CCA(P) to TCA(S)
so part of: sequence
location: 243021
location: region:243021-243021:1
so has part: feature:243021-243021:1:region

position:243021:1
position: 243021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:243021-243021:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad7; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 243028
location: region:243028-243028:1
so has part: feature:243028-243028:1:region

position:243028:1
position: 243028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:243028-243028:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad7; C to U RNA editing; TCA(S) to TTA(L)
so part of: sequence
location: 243053
location: region:243053-243053:1
so has part: feature:243053-243053:1:region

position:243053:1
position: 243053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:243053-243053:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad7; C to U RNA editing; CAT(H) to TAT(Y)
so part of: sequence
location: 243060
location: region:243060-243060:1
so has part: feature:243060-243060:1:region

position:243060:1
position: 243060
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:243060-243060:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad7; C to U RNA editing; synonymous
so part of: sequence
location: 243091
location: region:243091-243091:1
so has part: feature:243091-243091:1:region

position:243091:1
position: 243091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:243091-243091:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: NN-2
rpt type: direct
so part of: sequence
location: 243328..243397
location: region:243328-243397:1
so has part: feature:243328-243397:1:region

position:243328:1
position: 243328
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:243397:1
position: 243397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:243328-243397:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M44
so part of: sequence
location: 243777..243799
location: region:243777-243799:1
so has part: feature:243777-243799:1:region

position:243777:1
position: 243777
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:243799:1
position: 243799
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:243777-243799:1:region

DA397_mgp19
type: Exon
subclass of: SO_0000147
RO_0002162: 3702
gene: nad7
locus tag: DA397_mgp19
number: 2
SIO_010081: DA397_mgp19
subclass of: SO_0000673
so part of: DA397_mgp19
location: complement(244155..244223)
location: region:244155-244223:-1
so has part: feature:244155-244223:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:244155-244223:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad7; C to U RNA editing; TCA(S) to TTA(L)
so part of: sequence
location: 244158
location: region:244158-244158:1
so has part: feature:244158-244158:1:region

position:244158:1
position: 244158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:244158-244158:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad7; C to U RNA editing; TCT(S) to TTT(F)
so part of: sequence
location: 244167
location: region:244167-244167:1
so has part: feature:244167-244167:1:region

position:244167:1
position: 244167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:244167-244167:1:region

DA397_mgp19
type: Exon
subclass of: SO_0000147
RO_0002162: 3702
gene: nad7
locus tag: DA397_mgp19
number: 1
SIO_010081: DA397_mgp19
subclass of: SO_0000673
so part of: DA397_mgp19
location: complement(245188..245330)
location: region:245188-245330:-1
so has part: feature:245188-245330:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:245188-245330:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad7; C to U RNA editing; TCA(S) to TTA(L)
so part of: sequence
location: 245194
location: region:245194-245194:1
so has part: feature:245194-245194:1:region

position:245194:1
position: 245194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:245194-245194:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad7; C to U RNA editing; TCA(S) to TTA(L)
so part of: sequence
location: 245254
location: region:245254-245254:1
so has part: feature:245254-245254:1:region

position:245254:1
position: 245254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:245254-245254:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad7; C to U RNA editing; TCG(S) to TTG(L)
so part of: sequence
location: 245293
location: region:245293-245293:1
so has part: feature:245293-245293:1:region

position:245293:1
position: 245293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:245293-245293:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad7; C to U RNA editing; synonymous
so part of: sequence
location: 245307
location: region:245307-245307:1
so has part: feature:245307-245307:1:region

position:245307:1
position: 245307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:245307-245307:1:region

5'UTR
type: Five Prime UTR
subclass of: SO_0000204
RO_0002162: 3702
note: nad7
so part of: sequence
location: complement(245331..245705)
location: region:245331-245705:-1
so has part: feature:245331-245705:-1:region

position:245331:-1
position: 245331
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:245705:-1
position: 245705
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:245331-245705:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad7; alternative 5' transcript end (minor frequency)
so part of: sequence
location: 245398
location: region:245398-245398:1
so has part: feature:245398-245398:1:region

position:245398:1
position: 245398
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:245398-245398:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: nad7; alternative 5' transcript end (minor frequency)
so part of: sequence
location: 245439
location: region:245439-245439:1
so has part: feature:245439-245439:1:region

position:245439:1
position: 245439
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:245439-245439:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF141
so part of: sequence
location: complement(246008..246433)
location: region:246008-246433:-1
so has part: feature:246008-246433:-1:region

position:246008:-1
position: 246008
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:246433:-1
position: 246433
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:246008-246433:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF107C
so part of: sequence
location: complement(246261..246584)
location: region:246261-246584:-1
so has part: feature:246261-246584:-1:region

position:246261:-1
position: 246261
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:246584:-1
position: 246584
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:246261-246584:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: F-2
rpt type: direct
so part of: sequence
location: 246766..247115
location: region:246766-247115:1
so has part: feature:246766-247115:1:region

position:246766:1
position: 246766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:247115:1
position: 247115
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:246766-247115:1:region

3'UTR
type: Three Prime UTR
subclass of: SO_0000205
RO_0002162: 3702
note: atp8
so part of: sequence
location: complement(246895..247015)
location: region:246895-247015:-1
so has part: feature:246895-247015:-1:region

position:246895:-1
position: 246895
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:247015:-1
position: 247015
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:246895-247015:-1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M212
so part of: sequence
location: complement(246895..246944)
location: region:246895-246944:-1
so has part: feature:246895-246944:-1:region

position:246944:-1
position: 246944
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:246895-246944:-1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M213
so part of: sequence
location: complement(246895..246916)
location: region:246895-246916:-1
so has part: feature:246895-246916:-1:region

position:246916:-1
position: 246916
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:246895-246916:-1:region

DA397_mgp18
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
gene: atp8
locus tag: DA397_mgp18
so part of: sequence
location: complement(247016..247492)
location: region:247016-247492:-1
so has part: feature:247016-247492:-1:exon
subclass of: SO_0000010

36335664
type: Gene
SIO_000068: ncbigene

position:247016:-1
position: 247016
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:247492:-1
position: 247492
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:247016-247492:-1:exon

DA397_mgp18
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3702
gene: atp8
locus tag: DA397_mgp18
codon start: 1
product: ATPase subunit 8
translation: MPQLDKFTYFSQFFWLCLFFFTFYIFICNDGDGVLGISRILKLRNQLLSHRGKTIRSKDPNSLEDLLRKGFSTGVSYMYASLFEVSQWCKAVDLLGKRRKITLISCFGEISGSRGMERNILYNISKSSPSNTGRWITCRNCRNDIMLIHVVHGQGSIK
SIO_010081: DA397_mgp18
subclass of: SO_0000673
so part of: DA397_mgp18
location: complement(247016..247492)
location: region:247016-247492:-1
so has part: feature:247016-247492:-1:exon

YP_009472119.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:247016-247492:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: atp8; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 247085
location: region:247085-247085:1
so has part: feature:247085-247085:1:region

position:247085:1
position: 247085
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:247085-247085:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: atp8; C to U RNA editing (minor frequency); TCA(S) to TTA(L)
so part of: sequence
location: 247104
location: region:247104-247104:1
so has part: feature:247104-247104:1:region

position:247104:1
position: 247104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:247104-247104:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: atp8; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 247190
location: region:247190-247190:1
so has part: feature:247190-247190:1:region

position:247190:1
position: 247190
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:247190-247190:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: atp8; C to U RNA editing (minor frequency); synonymous
so part of: sequence
location: 247256
location: region:247256-247256:1
so has part: feature:247256-247256:1:region

position:247256:1
position: 247256
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:247256-247256:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: AA-1
rpt type: direct
so part of: sequence
location: 247484..247706
location: region:247484-247706:1
so has part: feature:247484-247706:1:region

position:247484:1
position: 247484
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:247706:1
position: 247706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:247484-247706:1:region

5'UTR
type: Five Prime UTR
subclass of: SO_0000204
RO_0002162: 3702
note: atp8
so part of: sequence
location: complement(247493..247720)
location: region:247493-247720:-1
so has part: feature:247493-247720:-1:region

position:247493:-1
position: 247493
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:247720:-1
position: 247720
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:247493-247720:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: V-2
so part of: sequence
location: 247494..247673
location: region:247494-247673:1
so has part: feature:247494-247673:1:region

position:247494:1
position: 247494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:247673:1
position: 247673
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:247494-247673:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M141
so part of: sequence
location: complement(247632..247649)
location: region:247632-247649:-1
so has part: feature:247632-247649:-1:region

position:247632:-1
position: 247632
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:247649:-1
position: 247649
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:247632-247649:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: atp8; alternative 5' transcript end
so part of: sequence
location: 247649
location: region:247649-247649:1
so has part: feature:247649-247649:1:region

position:247649:1
position: 247649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:247649-247649:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF122A
so part of: sequence
location: 249558..249926
location: region:249558-249926:1
so has part: feature:249558-249926:1:region

position:249558:1
position: 249558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:249926:1
position: 249926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:249558-249926:1:region

DA397_mgt15
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
gene: tRNAI(CAT)
locus tag: DA397_mgt15
so part of: sequence
location: 250307..250380
location: region:250307-250380:1
so has part: feature:250307-250380:1:exon
subclass of: SO_0000663

36335665
type: Gene
SIO_000068: ncbigene

position:250307:1
position: 250307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:250380:1
position: 250380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:250307-250380:1:exon

DA397_mgt15
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3702
gene: tRNAI(CAT)
locus tag: DA397_mgt15
product: tRNA-Ile
exception: RNA editing
note: anticodon:CAT; C assumed to be post-transcriptionally modified to lysidine, which pairs with A, not G (see PubMed ID 1698276)
SIO_010081: DA397_mgt15
subclass of: SO_0000673
so part of: DA397_mgt15
location: 250307..250380
location: region:250307-250380:1
so has part: feature:250307-250380:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:250307-250380:1:exon

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M219
so part of: sequence
location: complement(254298..254320)
location: region:254298-254320:-1
so has part: feature:254298-254320:-1:region

position:254298:-1
position: 254298
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:254320:-1
position: 254320
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:254298-254320:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: I-2
rpt type: inverted
so part of: sequence
location: 254842..255122
location: region:254842-255122:1
so has part: feature:254842-255122:1:region

position:254842:1
position: 254842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:255122:1
position: 255122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:254842-255122:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M77
so part of: sequence
location: complement(254842..254858)
location: region:254842-254858:-1
so has part: feature:254842-254858:-1:region

position:254842:-1
position: 254842
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:254858:-1
position: 254858
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:254842-254858:-1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M169
so part of: sequence
location: complement(255933..255949)
location: region:255933-255949:-1
so has part: feature:255933-255949:-1:region

position:255933:-1
position: 255933
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:255949:-1
position: 255949
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:255933-255949:-1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M170
so part of: sequence
location: complement(257189..257205)
location: region:257189-257205:-1
so has part: feature:257189-257205:-1:region

position:257189:-1
position: 257189
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:257205:-1
position: 257205
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:257189-257205:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: MM-2
rpt type: direct
so part of: sequence
location: 257511..257580
location: region:257511-257580:1
so has part: feature:257511-257580:1:region

position:257511:1
position: 257511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:257580:1
position: 257580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:257511-257580:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: J-2
rpt type: direct
so part of: sequence
location: 257621..257897
location: region:257621-257897:1
so has part: feature:257621-257897:1:region

position:257621:1
position: 257621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:257897:1
position: 257897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:257621-257897:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF106B
so part of: sequence
location: 257672..257992
location: region:257672-257992:1
so has part: feature:257672-257992:1:region

position:257672:1
position: 257672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:257992:1
position: 257992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:257672-257992:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: S-2
rpt type: direct
so part of: sequence
location: 257923..258143
location: region:257923-258143:1
so has part: feature:257923-258143:1:region

position:257923:1
position: 257923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:258143:1
position: 258143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:257923-258143:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: P-2
rpt type: direct
so part of: sequence
location: 258129..258558
location: region:258129-258558:1
so has part: feature:258129-258558:1:region

position:258129:1
position: 258129
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:258558:1
position: 258558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:258129-258558:1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: Large1-2
rpt type: inverted
so part of: sequence
location: 258638..265227
location: region:258638-265227:1
so has part: feature:258638-265227:1:region

position:258638:1
position: 258638
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:265227:1
position: 265227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:258638-265227:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M140
so part of: sequence
location: complement(260581..260604)
location: region:260581-260604:-1
so has part: feature:260581-260604:-1:region

position:260581:-1
position: 260581
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:260604:-1
position: 260604
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:260581-260604:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF152B
so part of: sequence
location: complement(260620..261078)
location: region:260620-261078:-1
so has part: feature:260620-261078:-1:region

position:260620:-1
position: 260620
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:261078:-1
position: 261078
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:260620-261078:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3702
note: open reading frame - ORF106A
so part of: sequence
location: complement(261623..261943)
location: region:261623-261943:-1
so has part: feature:261623-261943:-1:region

position:261623:-1
position: 261623
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:261943:-1
position: 261943
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:261623-261943:-1:region

repeat_region
type: Repeat Region
subclass of: SO_0000657
RO_0002162: 3702
note: Y-2
so part of: sequence
location: 263897..264071
location: region:263897-264071:1
so has part: feature:263897-264071:1:region

position:263897:1
position: 263897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:264071:1
position: 264071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:263897-264071:1:region

ncRNA
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 3702
nc RNA class: other
note: cosRNA M205
so part of: sequence
location: complement(264198..264237)
location: region:264198-264237:-1
so has part: feature:264198-264237:-1:region

position:264198:-1
position: 264198
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:264237:-1
position: 264237
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:264198-264237:-1:region

DA397_mgt16
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
gene: trnS(TGA)
locus tag: DA397_mgt16
note: anticodon:TGA; copy 2
so part of: sequence
location: complement(264335..264421)
location: region:264335-264421:-1
so has part: feature:264335-264421:-1:exon
subclass of: SO_0000663

36335692
type: Gene
SIO_000068: ncbigene

position:264335:-1
position: 264335
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:264421:-1
position: 264421
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:264335-264421:-1:exon

DA397_mgt16
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3702
gene: trnS(TGA)
locus tag: DA397_mgt16
product: tRNA-Ser
SIO_010081: DA397_mgt16
subclass of: SO_0000673
so part of: DA397_mgt16
location: complement(264335..264421)
location: region:264335-264421:-1
so has part: feature:264335-264421:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:264335-264421:-1:exon

3'UTR
type: Three Prime UTR
subclass of: SO_0000205
RO_0002162: 3702
note: atp6
so part of: sequence
location: complement(264422..264466)
location: region:264422-264466:-1
so has part: feature:264422-264466:-1:region

position:264422:-1
position: 264422
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:264466:-1
position: 264466
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:264422-264466:-1:region

DA397_mgp17
type: Gene
subclass of: SO_0000704
RO_0002162: 3702
gene: atp6
locus tag: DA397_mgp17
note: copy 2
so part of: sequence
location: complement(264467..265516)
location: region:264467-265516:-1
so has part: feature:264467-265516:-1:exon
subclass of: SO_0000010

36335693
type: Gene
SIO_000068: ncbigene

position:264467:-1
position: 264467
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:265516:-1
position: 265516
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:264467-265516:-1:exon