Ideonella dechloratans strain CCUG 30977 plasmid unnamed1, complete sequence.
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilaceae; Ideonella.
Complete genome sequence of Ideonella dechloratans type strain CCUG 30977T
Submitted (24-NOV-2021) Infectious Diseases, University of Gothenburg - CCUG, Guldhedsgatan 10, Box 7193, Gothenburg, Vastra Gotaland 40234, Sweden
REFSEQ INFORMATION: The reference sequence is identical to\nCP088082.1.\nBacteria and source DNA available from CCUG.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 27-OCT-2021\nAssembly Method :: Unicycler v. 0.4.8; Flye v. 2.8.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 400.0x\nSequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 09/04/2022 14:18:02\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,280\nCDSs (total) :: 4,207\nGenes (coding) :: 4,131\nCDSs (with protein) :: 4,131\nGenes (RNA) :: 73\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 61\nncRNAs :: 3\nPseudo Genes (total) :: 76\nCDSs (without protein) :: 76\nPseudo Genes (ambiguous residues) :: 0 of 76\nPseudo Genes (frameshifted) :: 10 of 76\nPseudo Genes (incomplete) :: 65 of 76\nPseudo Genes (internal stop) :: 8 of 76\nPseudo Genes (multiple problems) :: 7 of 76\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Activated sludge, wastewater treatment plant
Sweden: Malmo, Sjolunda municipal treatment plant
COORDINATES: similar to AA sequence:RefSeq:WP_008567731.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011517535.1
ferric reductase-like transmembrane domain-containing protein
COORDINATES: protein motif:HMM:TIGR00254.1
GO:0009975 - cyclase activity [Evidence IEA]
GO:0009966 - regulation of signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008075105.1
COORDINATES: similar to AA sequence:RefSeq:WP_007924951.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020648604.1
COORDINATES: similar to AA sequence:RefSeq:WP_015014208.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013209765.1
COORDINATES: similar to AA sequence:RefSeq:WP_009856498.1
COORDINATES: similar to AA sequence:RefSeq:WP_011828501.1
COORDINATES: similar to AA sequence:RefSeq:WP_008210838.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004325531.1
COORDINATES: similar to AA sequence:RefSeq:WP_017233246.1
COORDINATES: similar to AA sequence:RefSeq:WP_009549638.1
GO:0016866 - intramolecular transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008917129.1
GO:0003824 - catalytic activity [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012097980.1
COORDINATES: protein motif:HMM:NF012235.2
ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:TIGR00245.1
iron export ABC transporter permease subunit FetB
COORDINATES: similar to AA sequence:RefSeq:WP_007884659.1
COORDINATES: similar to AA sequence:RefSeq:WP_011289744.1
GO:0055085 - transmembrane transport [Evidence IEA]
TRAP transporter substrate-binding protein DctP
COORDINATES: similar to AA sequence:RefSeq:WP_015435220.1
COORDINATES: similar to AA sequence:RefSeq:WP_018641300.1
COORDINATES: similar to AA sequence:RefSeq:WP_011464137.1
GO:0015451 - decarboxylation-driven active transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019576193.1
malonate decarboxylase acyl carrier protein
COORDINATES: similar to AA sequence:RefSeq:WP_012345114.1
GO:0009317 - acetyl-CoA carboxylase complex [Evidence IEA]
GO:0003989 - acetyl-CoA carboxylase activity [Evidence IEA]; GO:0016831 - carboxy-lyase activity [Evidence IEA]
GO:0044262 - cellular carbohydrate metabolic process [Evidence IEA]; GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
biotin-independent malonate decarboxylase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_015865434.1
GO:0044262 - cellular carbohydrate metabolic process [Evidence IEA]
biotin-independent malonate decarboxylase subunit gamma
COORDINATES: protein motif:HMM:TIGR03135.1
GO:0051191 - prosthetic group biosynthetic process [Evidence IEA]
malonate decarboxylase holo-[acyl-carrier-protein] synthase
COORDINATES: similar to AA sequence:RefSeq:WP_009550656.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0046917 - triphosphoribosyl-dephospho-CoA synthase activity [Evidence IEA]
GO:0016310 - phosphorylation [Evidence IEA]
triphosphoribosyl-dephospho-CoA synthase
COORDINATES: protein motif:HMM:NF012901.2
acyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003593661.1
zinc-dependent alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015928009.1
COORDINATES: similar to AA sequence:RefSeq:WP_005256894.1
carboxymuconolactone decarboxylase family protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_009548676.1
COORDINATES: protein motif:HMM:NF020387.2
COORDINATES: similar to AA sequence:RefSeq:WP_011111767.1
COORDINATES: similar to AA sequence:RefSeq:WP_003113004.1
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012345763.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0008535 - respiratory chain complex IV assembly [Evidence IEA]
cytochrome c oxidase accessory protein CcoG
COORDINATES: similar to AA sequence:RefSeq:WP_014426799.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011802386.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_082010996.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: similar to AA sequence:RefSeq:WP_005797591.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR04123.1
ligase-associated DNA damage response endonuclease PdeM
COORDINATES: similar to AA sequence:RefSeq:WP_015011940.1
GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
ligase-associated DNA damage response DEXH box helicase
COORDINATES: similar to AA sequence:RefSeq:WP_009516544.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003910 - DNA ligase (ATP) activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013696984.1
ligase-associated DNA damage response exonuclease
COORDINATES: similar to AA sequence:RefSeq:WP_020203122.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014899900.1
COORDINATES: similar to AA sequence:RefSeq:WP_009622941.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013696911.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004340 - glucokinase activity [Evidence IEA]; GO:0005536 - glucose binding [Evidence IEA]
GO:0051156 - glucose 6-phosphate metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009856695.1
GO:0004340 - glucokinase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019407919.1
COORDINATES: similar to AA sequence:RefSeq:WP_012839620.1
COORDINATES: similar to AA sequence:RefSeq:WP_009856693.1
COORDINATES: protein motif:HMM:NF014822.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0043169 - cation binding [Evidence IEA]
alpha amylase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF012356.2
COORDINATES: similar to AA sequence:RefSeq:WP_017876232.1
COORDINATES: similar to AA sequence:RefSeq:WP_010674251.1
COORDINATES: similar to AA sequence:RefSeq:WP_009856690.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009856689.1
GO:0015144 - carbohydrate transmembrane transporter activity [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
maltose/maltodextrin ABC transporter substrate-binding protein MalE
COORDINATES: similar to AA sequence:RefSeq:WP_014426498.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_009855973.1
glycogen/starch/alpha-glucan phosphorylase
COORDINATES: similar to AA sequence:RefSeq:WP_019573759.1
GO:0003844 - 1,4-alpha-glucan branching enzyme activity [Evidence IEA]; GO:0043169 - cation binding [Evidence IEA]; GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO:0005978 - glycogen biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006976216.1
GO:0004134 - 4-alpha-glucanotransferase activity [Evidence IEA]
GO:0005980 - glycogen catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019703136.1
COORDINATES: similar to AA sequence:RefSeq:WP_019703137.1
COORDINATES: similar to AA sequence:RefSeq:WP_016452733.1
COORDINATES: similar to AA sequence:RefSeq:WP_008906886.1
COORDINATES: similar to AA sequence:RefSeq:WP_011829316.1
TerB family tellurite resistance protein
COORDINATES: similar to AA sequence:RefSeq:WP_009549000.1
HPF/RaiA family ribosome-associated protein
COORDINATES: similar to AA sequence:RefSeq:WP_009205147.1
COORDINATES: similar to AA sequence:RefSeq:WP_006464597.1
COORDINATES: protein motif:HMM:NF024701.2
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014899032.1
COORDINATES: similar to AA sequence:RefSeq:WP_002924411.1
COORDINATES: similar to AA sequence:RefSeq:WP_011547163.1
COORDINATES: similar to AA sequence:RefSeq:WP_017777919.1
COORDINATES: similar to AA sequence:RefSeq:WP_004370666.1
GO:0005515 - protein binding [Evidence IEA]
GO:0006749 - glutathione metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005799656.1
COORDINATES: similar to AA sequence:RefSeq:WP_016918168.1
COORDINATES: protein motif:HMM:TIGR04052.1
metallo-mystery pair system four-Cys motif protein
COORDINATES: similar to AA sequence:RefSeq:WP_029310391.1
GO:0015074 - DNA integration [Evidence IEA]
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_012838582.1
COORDINATES: similar to AA sequence:RefSeq:WP_019577712.1
COORDINATES: similar to AA sequence:RefSeq:WP_018992707.1
COORDINATES: protein motif:HMM:NF019350.2
GO:0016021 - integral component of membrane [Evidence IEA]
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020165585.1
COORDINATES: similar to AA sequence:RefSeq:WP_020201025.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017877454.1
COORDINATES: similar to AA sequence:RefSeq:WP_008448197.1
COORDINATES: protein motif:HMM:NF014477.2
COORDINATES: similar to AA sequence:RefSeq:WP_011660576.1
COORDINATES: similar to AA sequence:RefSeq:WP_006048278.1
COORDINATES: similar to AA sequence:RefSeq:NP_254078.1
COORDINATES: similar to AA sequence:RefSeq:WP_015270676.1
GO:0008777 - acetylornithine deacetylase activity [Evidence IEA]
GO:0006592 - ornithine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018006748.1
COORDINATES: protein motif:HMM:NF025468.2
COORDINATES: similar to AA sequence:RefSeq:WP_004992825.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014707925.1
COORDINATES: similar to AA sequence:RefSeq:WP_014707927.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011797473.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_019704035.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: protein motif:HMM:NF017690.2
COORDINATES: similar to AA sequence:RefSeq:WP_013949563.1
COORDINATES: similar to AA sequence:RefSeq:WP_008091762.1
COORDINATES: similar to AA sequence:RefSeq:WP_004407456.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017449895.1
GO:0015288 - porin activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007958720.1
COORDINATES: similar to AA sequence:RefSeq:WP_008149230.1
COORDINATES: similar to AA sequence:RefSeq:WP_007909677.1
COORDINATES: similar to AA sequence:RefSeq:WP_004407452.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
GMC family oxidoreductase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012347678.1
GO:0004068 - aspartate 1-decarboxylase activity [Evidence IEA]
GO:0006523 - alanine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009562745.1
COORDINATES: similar to AA sequence:RefSeq:WP_012222451.1
COORDINATES: similar to AA sequence:RefSeq:WP_014422654.1
COORDINATES: similar to AA sequence:RefSeq:WP_011047645.1
COORDINATES: protein motif:HMM:NF025008.2
COORDINATES: similar to AA sequence:RefSeq:WP_015012276.1
COORDINATES: similar to AA sequence:RefSeq:WP_012405397.1
type IV pili methyl-accepting chemotaxis transducer N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF017727.2
COORDINATES: similar to AA sequence:RefSeq:WP_011803901.1
COORDINATES: similar to AA sequence:RefSeq:WP_010463000.1
COORDINATES: similar to AA sequence:RefSeq:WP_017775783.1
GO:0009325 - nitrate reductase complex [Evidence IEA]
GO:0008940 - nitrate reductase activity [Evidence IEA]
GO:0019645 - anaerobic electron transport chain [Evidence IEA]
respiratory nitrate reductase subunit gamma
COORDINATES: similar to AA sequence:RefSeq:WP_011803121.1
GO:0051082 - unfolded protein binding [Evidence IEA]
GO:0051131 - chaperone-mediated protein complex assembly [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
nitrate reductase molybdenum cofactor assembly chaperone
COORDINATES: similar to AA sequence:RefSeq:WP_013593112.1
GO:0009061 - anaerobic respiration [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017775786.1
COORDINATES: similar to AA sequence:RefSeq:WP_017775787.1
GO:0005887 - integral component of plasma membrane [Evidence IEA]
GO:0015514 - nitrite efflux transmembrane transporter activity [Evidence IEA]
GO:0015707 - nitrite transport [Evidence IEA]
NarK family nitrate/nitrite MFS transporter
COORDINATES: similar to AA sequence:RefSeq:WP_011803894.1
COORDINATES: protein motif:HMM:NF024140.2
MCP four helix bundle domain-containing protein
COORDINATES: protein motif:HMM:NF012245.2
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020163638.1
nitric oxide reductase transcriptional regulator NorR
COORDINATES: similar to AA sequence:RefSeq:WP_013953911.1
COORDINATES: protein motif:HMM:NF024934.2
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_020163499.1
SCP2 sterol-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018914431.1
GO:0006744 - ubiquinone biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003821765.1
COORDINATES: similar to AA sequence:RefSeq:WP_006025882.1
COORDINATES: similar to AA sequence:RefSeq:WP_012250218.1
COORDINATES: similar to AA sequence:RefSeq:WP_012346505.1
COORDINATES: similar to AA sequence:RefSeq:WP_019643864.1
COORDINATES: similar to AA sequence:RefSeq:WP_015766206.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
two-component system response regulator KdpE
COORDINATES: similar to AA sequence:RefSeq:WP_014428272.1
COORDINATES: similar to AA sequence:RefSeq:WP_020204628.1
GO:0008556 - P-type potassium transmembrane transporter activity [Evidence IEA]
GO:0006813 - potassium ion transport [Evidence IEA]
potassium-transporting ATPase subunit KdpC
COORDINATES: similar to AA sequence:RefSeq:WP_013800441.1
GO:0031004 - potassium ion-transporting ATPase complex [Evidence IEA]
potassium-transporting ATPase subunit KdpB
COORDINATES: similar to AA sequence:RefSeq:WP_011802970.1
potassium-transporting ATPase subunit KdpA
COORDINATES: similar to AA sequence:RefSeq:WP_010105126.1
COORDINATES: similar to AA sequence:RefSeq:WP_020206218.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012204090.1
COORDINATES: similar to AA sequence:RefSeq:WP_016452595.1
COORDINATES: similar to AA sequence:RefSeq:WP_013543263.1
GO:0036211 - protein modification process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015865805.1
COORDINATES: similar to AA sequence:RefSeq:WP_015013793.1
COORDINATES: similar to AA sequence:RefSeq:WP_015013792.1
COORDINATES: similar to AA sequence:RefSeq:WP_017461288.1
COORDINATES: similar to AA sequence:RefSeq:WP_019648590.1
COORDINATES: protein motif:HMM:NF024698.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020011833.1
COORDINATES: similar to AA sequence:RefSeq:WP_011766034.1
GO:0009410 - response to xenobiotic stimulus [Evidence IEA]; GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
DHA2 family efflux MFS transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_014198774.1
COORDINATES: similar to AA sequence:RefSeq:WP_010093448.1
COORDINATES: protein motif:HMM:NF021357.2
COORDINATES: similar to AA sequence:RefSeq:WP_020749934.1
GO:0015109 - chromate transmembrane transporter activity [Evidence IEA]
GO:0015703 - chromate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007855612.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013395359.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020503794.1
COORDINATES: similar to AA sequence:RefSeq:WP_012761932.1
COORDINATES: similar to AA sequence:RefSeq:WP_008015841.1
COORDINATES: similar to AA sequence:RefSeq:WP_009665328.1
COORDINATES: similar to AA sequence:RefSeq:WP_008921974.1
COORDINATES: similar to AA sequence:RefSeq:WP_011352169.1
COORDINATES: similar to AA sequence:RefSeq:WP_003094048.1
COORDINATES: similar to AA sequence:RefSeq:WP_008938320.1
COORDINATES: nucleotide motif:Rfam:14.4:RF01734
Fluoride riboswitches increase expression of downstream genes that help mitigate the toxic effects of very high levels of fluoride; They are found in a wide variety of bacteria and archaea; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_009551716.1
COORDINATES: similar to AA sequence:RefSeq:WP_003546569.1
metal/formaldehyde-sensitive transcriptional repressor
COORDINATES: similar to AA sequence:RefSeq:WP_018906210.1
GO:0008324 - cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
CDF family Co(II)/Ni(II) efflux transporter DmeF
COORDINATES: similar to AA sequence:RefSeq:WP_012884705.1
COORDINATES: similar to AA sequence:RefSeq:WP_000842106.1
GO:0004024 - alcohol dehydrogenase activity, zinc-dependent [Evidence IEA]; GO:0051903 - S-(hydroxymethyl)glutathione dehydrogenase activity [Evidence IEA]
GO:0006113 - fermentation [Evidence IEA]; GO:0009404 - toxin metabolic process [Evidence IEA]
S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_012783831.1
COORDINATES: similar to AA sequence:RefSeq:WP_007828654.1
COORDINATES: similar to AA sequence:RefSeq:WP_003054641.1
GO:0003743 - translation initiation factor activity [Evidence IEA]
GO:0006413 - translational initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010104472.1
COORDINATES: protein motif:HMM:NF014573.2
COORDINATES: similar to AA sequence:RefSeq:WP_016495557.1
IS21-like element ISAav1 family helper ATPase IstB
COORDINATES: similar to AA sequence:RefSeq:WP_076612028.1
IS21-like element ISAav1 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_013516321.1
IS21-like element ISIde2 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_013516320.1
IS21-like element ISIde2 family helper ATPase IstB
COORDINATES: similar to AA sequence:RefSeq:WP_018079675.1
COORDINATES: similar to AA sequence:RefSeq:WP_003465043.1
COORDINATES: similar to AA sequence:RefSeq:WP_007194476.1
GO:0033743 - peptide-methionine (R)-S-oxide reductase activity [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
peptide-methionine (R)-S-oxide reductase MsrB
COORDINATES: similar to AA sequence:RefSeq:WP_008162258.1
COORDINATES: similar to AA sequence:RefSeq:WP_013516316.1
GO:0020037 - heme binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611707.1
ISL3-like element ISIde1 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_013516315.1
COORDINATES: similar to AA sequence:RefSeq:WP_013516314.1
respiratory nitrate reductase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_013516313.1
COORDINATES: similar to AA sequence:RefSeq:WP_013516312.1
COORDINATES: similar to AA sequence:RefSeq:WP_003084872.1
COORDINATES: similar to AA sequence:RefSeq:WP_011239590.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0005525 - GTP binding [Evidence IEA]
GO:0006777 - Mo-molybdopterin cofactor biosynthetic process [Evidence IEA]
molybdopterin-guanine dinucleotide biosynthesis protein B
COORDINATES: similar to AA sequence:RefSeq:WP_004872730.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_014960395.1
COORDINATES: similar to AA sequence:RefSeq:WP_011801627.1
COORDINATES: similar to AA sequence:RefSeq:WP_013233056.1
GO:0016021 - integral component of membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012204944.1
COORDINATES: similar to AA sequence:RefSeq:WP_019512186.1
COORDINATES: similar to AA sequence:RefSeq:WP_007848846.1
COORDINATES: similar to AA sequence:RefSeq:WP_000423170.1
COORDINATES: protein motif:HMM:NF039293.1
COORDINATES: protein motif:HMM:NF021485.2
COORDINATES: similar to AA sequence:RefSeq:WP_013653617.1
acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015954866.1
COORDINATES: protein motif:HMM:NF015679.2
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002620359.1
COORDINATES: similar to AA sequence:RefSeq:WP_013722455.1
COORDINATES: similar to AA sequence:RefSeq:WP_008057995.1
GO:0008137 - NADH dehydrogenase (ubiquinone) activity [Evidence IEA]
GO:0042773 - ATP synthesis coupled electron transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020165417.1
COORDINATES: similar to AA sequence:RefSeq:WP_010398241.1
COORDINATES: similar to AA sequence:RefSeq:WP_008445993.1
COORDINATES: similar to AA sequence:RefSeq:WP_007738066.1
COORDINATES: similar to AA sequence:RefSeq:WP_011659278.1
COORDINATES: protein motif:HMM:NF014567.2
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_011554459.1
COORDINATES: similar to AA sequence:RefSeq:WP_019574596.1
COORDINATES: similar to AA sequence:RefSeq:WP_011803184.1
COORDINATES: similar to AA sequence:RefSeq:WP_015013733.1
COORDINATES: similar to AA sequence:RefSeq:WP_010460580.1
bifunctional diguanylate cyclase/phosphodiesterase
COORDINATES: similar to AA sequence:RefSeq:WP_013721307.1
COORDINATES: similar to AA sequence:RefSeq:WP_013721306.1
COORDINATES: similar to AA sequence:RefSeq:WP_011465320.1
COORDINATES: similar to AA sequence:RefSeq:WP_019915782.1
COORDINATES: similar to AA sequence:RefSeq:WP_018914291.1
COORDINATES: similar to AA sequence:RefSeq:WP_013900663.1
COORDINATES: similar to AA sequence:RefSeq:WP_009857328.1
COORDINATES: similar to AA sequence:RefSeq:WP_014107119.1
COORDINATES: similar to AA sequence:RefSeq:WP_015329369.1
COORDINATES: similar to AA sequence:RefSeq:WP_017509064.1
COORDINATES: protein motif:HMM:NF016258.2
outer membrane protein assembly factor BamE
COORDINATES: similar to AA sequence:RefSeq:WP_011463689.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
GO:0042254 - ribosome biogenesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018238499.1
COORDINATES: similar to AA sequence:RefSeq:WP_008533715.1
COORDINATES: similar to AA sequence:RefSeq:WP_011806414.1
PAS domain-containing methyl-accepting chemotaxis protein
COORDINATES: similar to AA sequence:RefSeq:WP_019653453.1
COORDINATES: similar to AA sequence:RefSeq:WP_011135266.1
COORDINATES: similar to AA sequence:RefSeq:WP_007513311.1
COORDINATES: similar to AA sequence:RefSeq:WP_008907150.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009859023.1
COORDINATES: similar to AA sequence:RefSeq:WP_011830483.1
COORDINATES: protein motif:HMM:NF017077.2
COORDINATES: similar to AA sequence:RefSeq:WP_009519597.1
COORDINATES: similar to AA sequence:RefSeq:WP_014037659.1
NADH:flavin oxidoreductase/NADH oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011350162.1
COORDINATES: similar to AA sequence:RefSeq:WP_015451749.1
COORDINATES: similar to AA sequence:RefSeq:WP_011419606.1
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011830859.1
COORDINATES: similar to AA sequence:RefSeq:WP_017450006.1
GO:0004516 - nicotinate phosphoribosyltransferase activity [Evidence IEA]
GO:0019358 - nicotinate nucleotide salvage [Evidence IEA]
COORDINATES: protein motif:HMM:NF012340.2
COORDINATES: similar to AA sequence:RefSeq:WP_009858362.1
COORDINATES: similar to AA sequence:RefSeq:WP_002938976.1
COORDINATES: similar to AA sequence:RefSeq:WP_015015872.1
COORDINATES: similar to AA sequence:RefSeq:WP_006387758.1
COORDINATES: similar to AA sequence:RefSeq:WP_012345469.1
GO:0004334 - fumarylacetoacetase activity [Evidence IEA]
GO:0006559 - L-phenylalanine catabolic process [Evidence IEA]; GO:0006572 - tyrosine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011046431.1
COORDINATES: similar to AA sequence:RefSeq:WP_012347069.1
GO:0003868 - 4-hydroxyphenylpyruvate dioxygenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024895.2
COORDINATES: similar to AA sequence:RefSeq:WP_018746453.1
GO:0004386 - helicase activity [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003285125.1
type I-E CRISPR-associated protein Cse1/CasA
COORDINATES: similar to AA sequence:RefSeq:WP_004424722.1
type I-E CRISPR-associated protein Cse2/CasB
COORDINATES: similar to AA sequence:RefSeq:WP_003285123.1
type I-E CRISPR-associated protein Cas7/Cse4/CasC
COORDINATES: similar to AA sequence:RefSeq:WP_003286505.1
type I-E CRISPR-associated protein Cas5/CasD
COORDINATES: similar to AA sequence:RefSeq:WP_012700345.1
type I-E CRISPR-associated protein Cas6/Cse3/CasE
COORDINATES: similar to AA sequence:RefSeq:WP_003286502.1
GO:0004520 - endodeoxyribonuclease activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
GO:0051607 - defense response to virus [Evidence IEA]; GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
type I-E CRISPR-associated endonuclease Cas1e
COORDINATES: similar to AA sequence:RefSeq:WP_012019685.1
GO:0004521 - endoribonuclease activity [Evidence IEA]
type I-E CRISPR-associated endoribonuclease Cas2e
COORDINATES: similar to AA sequence:RefSeq:WP_015420481.1
COORDINATES: similar to AA sequence:RefSeq:WP_016902251.1
COORDINATES: similar to AA sequence:RefSeq:WP_018388095.1
COORDINATES: similar to AA sequence:RefSeq:WP_007829811.1
COORDINATES: similar to AA sequence:RefSeq:WP_012347528.1
GO:0008173 - RNA methyltransferase activity [Evidence IEA]
GO:0006364 - rRNA processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018606275.1
nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013592658.1
COORDINATES: similar to AA sequence:RefSeq:WP_015866739.1
COORDINATES: similar to AA sequence:RefSeq:WP_013542573.1
GO:0004357 - glutamate-cysteine ligase activity [Evidence IEA]
GO:0006750 - glutathione biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011810533.1
COORDINATES: similar to AA sequence:RefSeq:WP_011301779.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008134 - transcription factor binding [Evidence IEA]
sigma-54-dependent Fis family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014159718.1
COORDINATES: similar to AA sequence:RefSeq:WP_011516096.1
COORDINATES: similar to AA sequence:RefSeq:WP_014900550.1
COORDINATES: similar to AA sequence:RefSeq:WP_017775856.1
aromatic/alkene/methane monooxygenase hydroxylase/oxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_019451465.1
COORDINATES: similar to AA sequence:RefSeq:WP_006397645.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
phenol 2-monooxygenase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011301794.1
2Fe-2S iron-sulfur cluster binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011301795.1
GO:0018577 - catechol 2,3-dioxygenase activity [Evidence IEA]
GO:0009712 - catechol-containing compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008344260.1
COORDINATES: similar to AA sequence:RefSeq:WP_008344258.1
COORDINATES: similar to AA sequence:RefSeq:WP_011810522.1
GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
2-hydroxymuconic semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_011810521.1
COORDINATES: similar to AA sequence:RefSeq:WP_011829866.1
COORDINATES: similar to AA sequence:RefSeq:WP_002931480.1
GO:0047437 - 4-oxalocrotonate decarboxylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011810517.1
GO:0008774 - acetaldehyde dehydrogenase (acetylating) activity [Evidence IEA]
acetaldehyde dehydrogenase (acetylating)
COORDINATES: similar to AA sequence:RefSeq:WP_011875733.1
GO:0008701 - 4-hydroxy-2-oxovalerate aldolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012430576.1
4-oxalocrotonate tautomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008573087.1
zinc-binding alcohol dehydrogenase family protein
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: similar to AA sequence:RefSeq:WP_011524529.1
COORDINATES: similar to AA sequence:RefSeq:WP_012430592.1
COORDINATES: similar to AA sequence:RefSeq:WP_012430593.1
toluene-4-monooxygenase system B family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018989564.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012430595.1
COORDINATES: similar to AA sequence:RefSeq:WP_017775871.1
aromatic/alkene monooxygenase hydroxylase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_018989561.1
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012218039.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: protein motif:HMM:NF037735.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611958.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: nucleotide motif:Rfam:14.4:RF01497
AL1L pseudoknot; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_011486029.1
GO:0008677 - 2-dehydropantoate 2-reductase activity [Evidence IEA]
GO:0015940 - pantothenate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006751270.1
COORDINATES: protein motif:HMM:NF024811.2
COORDINATES: similar to AA sequence:RefSeq:WP_015912667.1
COORDINATES: similar to AA sequence:RefSeq:WP_006384152.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: similar to AA sequence:RefSeq:WP_012345097.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_014427859.1
COORDINATES: similar to AA sequence:RefSeq:WP_019577366.1
COORDINATES: protein motif:HMM:NF014069.2
COORDINATES: protein motif:HMM:NF028468.2
COORDINATES: protein motif:HMM:TIGR03607.1
COORDINATES: similar to AA sequence:RefSeq:WP_020649604.1
COORDINATES: similar to AA sequence:RefSeq:WP_008061584.1
COORDINATES: similar to AA sequence:RefSeq:WP_008061346.1
low affinity iron permease family protein
COORDINATES: protein motif:HMM:NF019237.2
COORDINATES: similar to AA sequence:RefSeq:WP_019142693.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020651435.1
COORDINATES: similar to AA sequence:RefSeq:WP_018006812.1
COORDINATES: similar to AA sequence:RefSeq:WP_019141759.1
COORDINATES: similar to AA sequence:RefSeq:WP_006578660.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]; GO:0008941 - nitric oxide dioxygenase activity [Evidence IEA]; GO:0019825 - oxygen binding [Evidence IEA]
GO:0051409 - response to nitrosative stress [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016446672.1
COORDINATES: similar to AA sequence:RefSeq:WP_006389573.1
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011465999.1
GO:0004629 - phospholipase C activity [Evidence IEA]
phospholipase C, phosphocholine-specific
COORDINATES: similar to AA sequence:RefSeq:WP_009856215.1
COORDINATES: similar to AA sequence:RefSeq:WP_000978494.1
GO:0009027 - tartrate dehydrogenase activity [Evidence IEA]
GO:0046395 - carboxylic acid catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012422.2
LuxR C-terminal-related transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007980628.1
COORDINATES: protein motif:HMM:NF014566.2
CPBP family intramembrane metalloprotease
COORDINATES: similar to AA sequence:RefSeq:WP_009858667.1
COORDINATES: similar to AA sequence:RefSeq:WP_020227291.1
COORDINATES: similar to AA sequence:RefSeq:WP_007870904.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF012801.2
COORDINATES: protein motif:HMM:NF015506.2
COORDINATES: similar to AA sequence:RefSeq:WP_017773164.1
COORDINATES: similar to AA sequence:RefSeq:WP_011767275.1
COORDINATES: similar to AA sequence:RefSeq:WP_010794738.1
GO:0008817 - cob(I)yrinic acid a,c-diamide adenosyltransferase activity [Evidence IEA]
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]
cob(I)yrinic acid a,c-diamide adenosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011285917.1
GO:0008939 - nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity [Evidence IEA]
nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011831800.1
GO:0042242 - cobyrinic acid a,c-diamide synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018420487.1
COORDINATES: similar to AA sequence:RefSeq:WP_012747234.1
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: similar to AA sequence:RefSeq:WP_017233935.1
COORDINATES: protein motif:HMM:NF024989.2
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: protein motif:HMM:NF013530.2
COORDINATES: protein motif:HMM:NF019013.2
GO:0030638 - polyketide metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012382.2
COORDINATES: similar to AA sequence:RefSeq:WP_011805003.1
COORDINATES: similar to AA sequence:RefSeq:WP_011235906.1
COORDINATES: protein motif:HMM:NF015047.2
COORDINATES: similar to AA sequence:RefSeq:WP_013500520.1
COORDINATES: similar to AA sequence:RefSeq:WP_019689009.1
COORDINATES: similar to AA sequence:RefSeq:WP_004994478.1
COORDINATES: similar to AA sequence:RefSeq:WP_009206872.1
COORDINATES: similar to AA sequence:RefSeq:WP_011463235.1
COORDINATES: similar to AA sequence:RefSeq:WP_004332550.1
MetQ/NlpA family ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017639302.1
COORDINATES: protein motif:HMM:NF020940.2
COORDINATES: similar to AA sequence:RefSeq:WP_000594016.1
COORDINATES: similar to AA sequence:RefSeq:WP_012747947.1
COORDINATES: similar to AA sequence:RefSeq:WP_011764910.1
formate/nitrite transporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020230652.1
nitrate- and nitrite sensing domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019572229.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0008942 - nitrite reductase [NAD(P)H] activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016450064.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]; GO:0008942 - nitrite reductase [NAD(P)H] activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0042128 - nitrate assimilation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015014002.1
COORDINATES: similar to AA sequence:RefSeq:WP_002614625.1
COORDINATES: similar to AA sequence:RefSeq:WP_017332567.1
COORDINATES: similar to AA sequence:RefSeq:WP_019704834.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_013690476.1
COORDINATES: similar to AA sequence:RefSeq:WP_017777575.1
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008122856.1
COORDINATES: similar to AA sequence:RefSeq:WP_014428732.1
outer membrane protein transport protein
COORDINATES: similar to AA sequence:RefSeq:WP_012346379.1
COORDINATES: similar to AA sequence:RefSeq:WP_011288617.1
GO:0016151 - nickel cation binding [Evidence IEA]
nickel-dependent hydrogenase large subunit
COORDINATES: protein motif:HMM:TIGR00072.1
GO:0008233 - peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012346376.1
COORDINATES: similar to AA sequence:RefSeq:WP_011442250.1
COORDINATES: similar to AA sequence:RefSeq:WP_009859099.1
PhnD/SsuA/transferrin family substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009859098.1
COORDINATES: similar to AA sequence:RefSeq:WP_018403994.1
COORDINATES: protein motif:HMM:NF020908.2
COORDINATES: similar to AA sequence:RefSeq:WP_003057483.1
sensor domain-containing diguanylate cyclase
COORDINATES: similar to AA sequence:RefSeq:WP_008906419.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0015446 - ATPase-coupled arsenite transmembrane transporter activity [Evidence IEA]
GO:0071722 - detoxification of arsenic-containing substance [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013519520.1
COORDINATES: similar to AA sequence:RefSeq:WP_018604599.1
COORDINATES: similar to AA sequence:RefSeq:WP_005286587.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_009549009.1
GO:0008490 - arsenite secondary active transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014428282.1
COORDINATES: similar to AA sequence:RefSeq:WP_011804684.1
COORDINATES: similar to AA sequence:RefSeq:WP_003107243.1
ArsI/CadI family heavy metal resistance metalloenzyme
COORDINATES: similar to AA sequence:RefSeq:WP_011829183.1
COORDINATES: similar to AA sequence:RefSeq:WP_011629663.1
COORDINATES: similar to AA sequence:RefSeq:WP_000100193.1
COORDINATES: similar to AA sequence:RefSeq:WP_018078507.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
AmmeMemoRadiSam system radical SAM enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_011312098.1
COORDINATES: similar to AA sequence:RefSeq:WP_019368412.1
COORDINATES: protein motif:HMM:NF024685.2
COORDINATES: similar to AA sequence:RefSeq:WP_004108333.1
COORDINATES: similar to AA sequence:RefSeq:WP_019574258.1
COORDINATES: similar to AA sequence:RefSeq:WP_019237486.1
COORDINATES: similar to AA sequence:RefSeq:WP_006472557.1
COORDINATES: similar to AA sequence:RefSeq:WP_011659496.1
COORDINATES: similar to AA sequence:RefSeq:WP_019560475.1
COORDINATES: similar to AA sequence:RefSeq:WP_006385128.1
COORDINATES: similar to AA sequence:RefSeq:WP_013959035.1
COORDINATES: similar to AA sequence:RefSeq:WP_013689749.1
COORDINATES: protein motif:HMM:NF016836.2
COORDINATES: similar to AA sequence:RefSeq:WP_019656593.1
GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018915215.1
mechanosensitive ion channel family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002940235.1
COORDINATES: similar to AA sequence:RefSeq:WP_007177321.1
COORDINATES: similar to AA sequence:RefSeq:WP_018906561.1
COORDINATES: similar to AA sequence:RefSeq:WP_009551607.1
GO:0004039 - allophanate hydrolase activity [Evidence IEA]
GO:0019627 - urea metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007848329.1
COORDINATES: similar to AA sequence:RefSeq:WP_007848328.1
COORDINATES: similar to AA sequence:RefSeq:WP_009551610.1
COORDINATES: similar to AA sequence:RefSeq:WP_006463148.1
COORDINATES: similar to AA sequence:RefSeq:WP_019575190.1
COORDINATES: similar to AA sequence:RefSeq:WP_019575189.1
BMP family ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009456299.1
COORDINATES: similar to AA sequence:RefSeq:WP_011750901.1
COORDINATES: similar to AA sequence:RefSeq:WP_008902777.1
GO:0009349 - riboflavin synthase complex [Evidence IEA]
GO:0000906 - 6,7-dimethyl-8-ribityllumazine synthase activity [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00050
FMN riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_011334697.1
COORDINATES: similar to AA sequence:RefSeq:WP_010461755.1
COORDINATES: similar to AA sequence:RefSeq:WP_009855740.1
energy-coupling factor ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_011793261.1
GO:0046026 - precorrin-4 C11-methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008906453.1
COORDINATES: similar to AA sequence:RefSeq:WP_011831803.1
COORDINATES: similar to AA sequence:RefSeq:WP_008443338.1
GO:0008168 - methyltransferase activity [Evidence IEA]
cobalt-precorrin-5B (C(1))-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011831805.1
GO:0046025 - precorrin-6Y C5,15-methyltransferase (decarboxylating) activity [Evidence IEA]
GO:0046140 - corrin biosynthetic process [Evidence IEA]
precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE
COORDINATES: similar to AA sequence:RefSeq:WP_019572682.1
GO:0030788 - precorrin-2 C20-methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020157667.1
COORDINATES: similar to AA sequence:RefSeq:WP_011831808.1
COORDINATES: similar to AA sequence:RefSeq:WP_008443342.1
GO:0030789 - precorrin-3B C17-methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012746162.1
NAD(P)H-dependent oxidoreductase subunit E
COORDINATES: similar to AA sequence:RefSeq:WP_016445223.1
GO:0016880 - acid-ammonia (or amide) ligase activity [Evidence IEA]
adenosylcobinamide-phosphate synthase CbiB
COORDINATES: similar to AA sequence:RefSeq:WP_013900968.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_006788321.1
GO:0051073 - adenosylcobinamide-GDP ribazoletransferase activity [Evidence IEA]
adenosylcobinamide-GDP ribazoletransferase
COORDINATES: protein motif:HMM:NF012521.2
COORDINATES: similar to AA sequence:RefSeq:WP_018991828.1
GO:0043752 - adenosylcobinamide kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_008644061.1
COORDINATES: similar to AA sequence:RefSeq:WP_018311305.1
COORDINATES: similar to AA sequence:RefSeq:WP_011001786.1
COORDINATES: similar to AA sequence:RefSeq:WP_008920462.1
COORDINATES: similar to AA sequence:RefSeq:WP_013234389.1
COORDINATES: similar to AA sequence:RefSeq:WP_019657029.1
COORDINATES: similar to AA sequence:RefSeq:WP_020165984.1
COORDINATES: protein motif:HMM:NF022525.2
COORDINATES: similar to AA sequence:RefSeq:WP_015664648.1
COORDINATES: similar to AA sequence:RefSeq:WP_015668770.1
COORDINATES: similar to AA sequence:RefSeq:WP_020176600.1
COORDINATES: similar to AA sequence:RefSeq:WP_007918910.1
bifunctional helix-turn-helix transcriptional regulator/GNAT family N-acetyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_013594051.1
COORDINATES: similar to AA sequence:RefSeq:WP_011486423.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0003724 - RNA helicase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017244193.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00504
glycine riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_018913520.1
COORDINATES: similar to AA sequence:RefSeq:WP_006760101.1
COORDINATES: similar to AA sequence:RefSeq:WP_019578150.1
FMN-binding negative transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019578149.1
COORDINATES: protein motif:HMM:NF018745.2
COORDINATES: similar to AA sequence:RefSeq:WP_003080755.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558246.1
COORDINATES: similar to AA sequence:RefSeq:WP_003112650.1
COORDINATES: similar to AA sequence:RefSeq:WP_012402899.1
COORDINATES: similar to AA sequence:RefSeq:WP_003267672.1
integrase arm-type DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020885841.1
reverse transcriptase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019561762.1
diversity-generating retroelement protein Avd
COORDINATES: similar to AA sequence:RefSeq:WP_018086490.1
COORDINATES: similar to AA sequence:RefSeq:WP_004784348.1
COORDINATES: protein motif:HMM:NF039183.1
COORDINATES: similar to AA sequence:RefSeq:WP_011908357.1
COORDINATES: similar to AA sequence:RefSeq:WP_013965576.1
COORDINATES: similar to AA sequence:RefSeq:WP_011804379.1
COORDINATES: protein motif:HMM:NF037921.2
COORDINATES: similar to AA sequence:RefSeq:WP_011875419.1
COORDINATES: similar to AA sequence:RefSeq:WP_001112040.1
COORDINATES: similar to AA sequence:RefSeq:WP_004780842.1
COORDINATES: similar to AA sequence:RefSeq:WP_013697134.1
COORDINATES: similar to AA sequence:RefSeq:WP_018749352.1
COORDINATES: similar to AA sequence:RefSeq:WP_015973918.1
COORDINATES: similar to AA sequence:RefSeq:WP_013965549.1
COORDINATES: similar to AA sequence:RefSeq:WP_011804378.1
COORDINATES: similar to AA sequence:RefSeq:WP_013965546.1
COORDINATES: similar to AA sequence:RefSeq:WP_013965543.1
COORDINATES: similar to AA sequence:RefSeq:WP_013965540.1
COORDINATES: similar to AA sequence:RefSeq:WP_013965537.1
COORDINATES: protein motif:HMM:NF015550.2
COORDINATES: protein motif:HMM:NF024252.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_001360881.1
COORDINATES: similar to AA sequence:RefSeq:WP_012762647.1
Ref family recombination enhancement nuclease
COORDINATES: protein motif:HMM:NF018772.2
COORDINATES: protein motif:HMM:NF013043.2
COORDINATES: protein motif:HMM:NF012529.2
COORDINATES: similar to AA sequence:RefSeq:WP_001205847.1
COORDINATES: similar to AA sequence:RefSeq:WP_018004058.1
COORDINATES: similar to AA sequence:RefSeq:WP_011806691.1
NUMOD4 motif-containing HNH endonuclease
COORDINATES: similar to AA sequence:RefSeq:WP_012416105.1
COORDINATES: similar to AA sequence:RefSeq:WP_004086788.1
COORDINATES: similar to AA sequence:RefSeq:WP_000948459.1
COORDINATES: similar to AA sequence:RefSeq:WP_020748861.1
COORDINATES: protein motif:HMM:NF021128.2
COORDINATES: protein motif:HMM:NF016342.2
COORDINATES: similar to AA sequence:RefSeq:WP_003215387.1
COORDINATES: protein motif:HMM:NF021574.2
COORDINATES: similar to AA sequence:RefSeq:WP_012273083.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876338.1
COORDINATES: similar to AA sequence:RefSeq:WP_013790548.1
COORDINATES: similar to AA sequence:RefSeq:WP_005779787.1
COORDINATES: similar to AA sequence:RefSeq:WP_008015867.1
COORDINATES: similar to AA sequence:RefSeq:WP_006228248.1
COORDINATES: similar to AA sequence:RefSeq:WP_003806953.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017404164.1
COORDINATES: similar to AA sequence:RefSeq:WP_003267596.1
COORDINATES: similar to AA sequence:RefSeq:WP_008329138.1
COORDINATES: similar to AA sequence:RefSeq:WP_020655957.1
COORDINATES: protein motif:HMM:TIGR01845.1
GO:0009279 - cell outer membrane [Evidence IEA]
efflux transporter outer membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_020325909.1
COORDINATES: similar to AA sequence:RefSeq:WP_014427116.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_019897068.1
COORDINATES: similar to AA sequence:RefSeq:WP_003100853.1
COORDINATES: similar to AA sequence:RefSeq:WP_003100856.1
COORDINATES: similar to AA sequence:RefSeq:WP_011809177.1
Uncharacterized conserved protein, contains double-stranded beta-helix domain
COORDINATES: similar to AA sequence:RefSeq:WP_001097412.1
COORDINATES: similar to AA sequence:RefSeq:WP_001293886.1
COORDINATES: similar to AA sequence:RefSeq:WP_001247892.1
COORDINATES: similar to AA sequence:RefSeq:WP_014834018.1
Tn3-like element ISPa38 family transposase
COORDINATES: protein motif:HMM:NF012876.2
COORDINATES: similar to AA sequence:RefSeq:WP_003975091.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008373976.1
COORDINATES: similar to AA sequence:RefSeq:WP_011902430.1
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_014426873.1
rhodanese-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013653366.1
COORDINATES: similar to AA sequence:RefSeq:WP_005797142.1
COORDINATES: similar to AA sequence:RefSeq:WP_011481885.1
COORDINATES: protein motif:HMM:NF024094.2
COORDINATES: similar to AA sequence:RefSeq:WP_017776082.1
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_019142565.1
COORDINATES: protein motif:HMM:NF013235.2
COORDINATES: similar to AA sequence:RefSeq:WP_010556127.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015828683.1
COORDINATES: similar to AA sequence:RefSeq:WP_013783314.1
COORDINATES: similar to AA sequence:RefSeq:WP_007833376.1
COORDINATES: similar to AA sequence:RefSeq:WP_009857612.1
hybrid sensor histidine kinase/response regulator
PAS domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_013723005.1
COORDINATES: similar to AA sequence:RefSeq:WP_019575301.1
COORDINATES: similar to AA sequence:RefSeq:WP_014430689.1
COORDINATES: similar to AA sequence:RefSeq:WP_011802379.1
COORDINATES: similar to AA sequence:RefSeq:WP_011301527.1
PQQ-dependent dehydrogenase, methanol/ethanol family
COORDINATES: similar to AA sequence:RefSeq:WP_018314108.1
ankyrin repeat domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012655271.1
COORDINATES: similar to AA sequence:RefSeq:WP_011802952.1
COORDINATES: similar to AA sequence:RefSeq:WP_016450895.1
GO:0008794 - arsenate reductase (glutaredoxin) activity [Evidence IEA]
This arsenate reductase requires both glutathione and glutaredoxin to convert arsenate to arsenite, after which the efflux transporter formed by ArsA and ArsB can extrude the arsenite from the cell, providing resistance.; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006917991.1
COORDINATES: similar to AA sequence:RefSeq:WP_019703729.1
COORDINATES: similar to AA sequence:RefSeq:WP_011463403.1
COORDINATES: similar to AA sequence:RefSeq:WP_041744100.1
COORDINATES: similar to AA sequence:RefSeq:WP_014429931.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_002992300.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO:0003979 - UDP-glucose 6-dehydrogenase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011465353.1