Thermofilum pendens Hrk 5, complete sequence.
Archaea; Thermoproteota; Thermoprotei; Thermofilales; Thermofilaceae; Thermofilum.
Complete sequence of Chromosome1 of Thermofilum pendens Hrk 5
Submitted (14-DEC-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP000505.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4001423\nSource DNA and archaea available from Carl Woese\n(carl@phylo.life.uiuc.edu)\nContacts: Carl Woese (carl@phylo.life.uiuc.edu)\n Paul Richardson (microbes@cuba.jgi-psf.org)\nQuality assurance done by JGI-Stanford\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-LANL\nFinished microbial genomes have been curated to close all gaps with\ngreater than 98% coverage of at least two independent clones. Each\nbase pair has a minimum q (quality) value of 30 and the total error\nrate is less than one per 50000.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/02/2023 01:26:10\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,972\nCDSs (total) :: 1,924\nGenes (coding) :: 1,915\nCDSs (with protein) :: 1,915\nGenes (RNA) :: 48\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 44\nncRNAs :: 1\nPseudo Genes (total) :: 9\nCDSs (without protein) :: 9\nPseudo Genes (ambiguous residues) :: 0 of 9\nPseudo Genes (frameshifted) :: 8 of 9\nPseudo Genes (incomplete) :: 2 of 9\nPseudo Genes (internal stop) :: 1 of 9\nPseudo Genes (multiple problems) :: 2 of 9\nCRISPR Arrays :: 12\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF013718.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF017181.2
COORDINATES: protein motif:HMM:NF012546.2
COORDINATES: protein motif:HMM:NF019310.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF012235.2
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014420.2
energy-coupling factor transporter transmembrane component T
COORDINATES: protein motif:HMM:NF017941.2
COORDINATES: protein motif:HMM:NF013961.2
transglutaminase domain-containing protein
COORDINATES: protein motif:HMM:TIGR01351.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0050145 - nucleoside monophosphate kinase activity [Evidence IEA]
GO:0016310 - phosphorylation [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF021350.2
AAA-associated domain-containing protein
COORDINATES: protein motif:HMM:NF012738.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016874.2
COORDINATES: protein motif:HMM:NF013224.2
Lrp/AsnC family transcriptional regulator
COORDINATES: protein motif:HMM:NF024811.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025833.2
COORDINATES: protein motif:HMM:NF018816.2
COORDINATES: protein motif:HMM:NF024853.2
COORDINATES: protein motif:HMM:NF006230.0
pyridoxal phosphate-dependent aminotransferase
COORDINATES: protein motif:HMM:NF013970.2
GO:0004540 - ribonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF027681.2
GO:0003824 - catalytic activity [Evidence IEA]
NAD-dependent epimerase/dehydratase family protein
COORDINATES: protein motif:HMM:NF039181.1
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014912.2
COORDINATES: protein motif:HMM:TIGR00318.1
COORDINATES: protein motif:HMM:NF019604.2
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR04337.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
AmmeMemoRadiSam system radical SAM enzyme
COORDINATES: protein motif:HMM:NF014069.2
COORDINATES: protein motif:HMM:NF039907.1
GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF016131.2
formate dehydrogenase accessory protein FdhE
COORDINATES: protein motif:HMM:NF014046.2
COORDINATES: protein motif:HMM:NF001097.0
GO:0004845 - uracil phosphoribosyltransferase activity [Evidence IEA]
GO:0009116 - nucleoside metabolic process [Evidence IEA]
type II toxin-antitoxin system VapC family toxin
COORDINATES: protein motif:HMM:NF014035.2
sulfite exporter TauE/SafE family protein
COORDINATES: protein motif:HMM:NF012544.2
COORDINATES: protein motif:HMM:TIGR02537.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: protein motif:HMM:NF014081.2
COORDINATES: protein motif:HMM:NF013232.2
COORDINATES: protein motif:HMM:NF016908.2
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015648.2
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF021348.2
COORDINATES: protein motif:HMM:NF021625.2
GO:0004789 - thiamine-phosphate diphosphorylase activity [Evidence IEA]
thiamine-phosphate synthase family protein
COORDINATES: protein motif:HMM:NF022932.2
COORDINATES: protein motif:HMM:TIGR04190.1
TIGR04190 family B12-binding domain/radical SAM domain protein
COORDINATES: protein motif:HMM:TIGR04084.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO:0046500 - S-adenosylmethionine metabolic process [Evidence IEA]
TIGR04084 family radical SAM/SPASM domain-containing protein
COORDINATES: protein motif:HMM:NF015411.2
GO:0051287 - NAD binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012300.2
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011753324.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF001484.0
GO:0004360 - glutamine-fructose-6-phosphate transaminase (isomerizing) activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
glutamine--fructose-6-phosphate transaminase (isomerizing)
COORDINATES: protein motif:HMM:NF012695.2
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: protein motif:HMM:NF039193.1
COORDINATES: protein motif:HMM:NF013540.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF014079.2
GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF021442.2
COORDINATES: protein motif:HMM:TIGR03327.1
COORDINATES: protein motif:HMM:NF013481.2
aldehyde ferredoxin oxidoreductase family protein
COORDINATES: protein motif:HMM:NF014636.2
COORDINATES: protein motif:HMM:NF015639.2
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014084.2
COORDINATES: protein motif:HMM:NF033823.0
COORDINATES: protein motif:HMM:NF013934.2
COORDINATES: protein motif:HMM:NF036989.2
ribbon-helix-helix domain-containing protein
COORDINATES: protein motif:HMM:TIGR00399.1
GO:0004825 - methionine-tRNA ligase activity [Evidence IEA]
GO:0006431 - methionyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013777.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF013053.2
isochorismatase family cysteine hydrolase
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF014618.2
COORDINATES: protein motif:HMM:NF024938.2
COORDINATES: protein motif:HMM:NF013227.2
GO:0008483 - transaminase activity [Evidence IEA]
DegT/DnrJ/EryC1/StrS family aminotransferase
COORDINATES: protein motif:HMM:TIGR01060.1
GO:0004634 - phosphopyruvate hydratase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013646.2
COORDINATES: protein motif:HMM:NF015513.2
COORDINATES: protein motif:HMM:NF013382.2
GO:0008168 - methyltransferase activity [Evidence IEA]
methyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF012568.2
GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013213.2
GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]
COORDINATES: protein motif:HMM:NF014805.2
biotin carboxylase N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF002010.0
COORDINATES: protein motif:HMM:NF013465.2
GO:0046872 - metal ion binding [Evidence IEA]
zinc ABC transporter substrate-binding protein
metal ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:NF013143.2
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]
GO:0030001 - metal ion transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF020334.2
COORDINATES: protein motif:HMM:NF014706.2
COORDINATES: protein motif:HMM:NF024258.2
COORDINATES: protein motif:HMM:NF024851.2
COORDINATES: protein motif:HMM:TIGR00392.1
GO:0004822 - isoleucine-tRNA ligase activity [Evidence IEA]
GO:0006428 - isoleucyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF014017.2
COORDINATES: protein motif:HMM:NF022100.2
COORDINATES: protein motif:HMM:NF024778.2
GO:0017004 - cytochrome complex assembly [Evidence IEA]
COORDINATES: protein motif:HMM:NF015052.2
COORDINATES: protein motif:HMM:NF002317.0
GO:0004427 - inorganic diphosphate phosphatase activity [Evidence IEA]
GO:0006796 - phosphate-containing compound metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012239.2
COORDINATES: protein motif:HMM:NF016163.2
COORDINATES: protein motif:HMM:TIGR02274.1
GO:0008829 - dCTP deaminase activity [Evidence IEA]
GO:0009394 - 2'-deoxyribonucleotide metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012933.2
COORDINATES: protein motif:HMM:NF014077.2
COORDINATES: similar to AA sequence:RefSeq:WP_011752912.1
COORDINATES: similar to AA sequence:RefSeq:WP_018194161.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012706.2
ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF013658.2
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: protein motif:HMM:NF024874.2
COORDINATES: protein motif:HMM:NF012584.2
acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
COORDINATES: protein motif:HMM:NF013225.2
GO:0016874 - ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025017.2
COORDINATES: protein motif:HMM:NF013222.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003908 - methylated-DNA-[protein]-cysteine S-methyltransferase activity [Evidence IEA]
methylated-DNA--[protein]-cysteine S-methyltransferase
COORDINATES: protein motif:HMM:NF014433.2
COORDINATES: protein motif:HMM:NF024948.2
COORDINATES: protein motif:HMM:NF040105.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013998.2
COORDINATES: protein motif:HMM:NF001380.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0019205 - nucleobase-containing compound kinase activity [Evidence IEA]; GO:0016776 - phosphotransferase activity, phosphate group as acceptor [Evidence IEA]
GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]
transglutaminase-like domain-containing protein
COORDINATES: protein motif:HMM:NF009007.0
GO:0008804 - carbamate kinase activity [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012354.2
COORDINATES: protein motif:HMM:TIGR01687.1
GO:0006777 - Mo-molybdopterin cofactor biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024634.2
4Fe-4S dicluster domain-containing protein
COORDINATES: protein motif:HMM:NF024214.2
GO:0005525 - GTP binding [Evidence IEA]; GO:0061603 - molybdenum cofactor guanylyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF005097.0
GO:0008137 - NADH dehydrogenase (ubiquinone) activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF005012.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0008137 - NADH dehydrogenase (ubiquinone) activity [Evidence IEA]; GO:0048038 - quinone binding [Evidence IEA]
NADH-quinone oxidoreductase subunit NuoB
COORDINATES: protein motif:HMM:NF012566.2
COORDINATES: protein motif:HMM:NF012581.2
proton-conducting transporter membrane subunit
COORDINATES: protein motif:HMM:NF008556.0
COORDINATES: protein motif:HMM:NF012373.2
COORDINATES: protein motif:HMM:NF024644.2
COORDINATES: similar to AA sequence:RefSeq:WP_012979844.1
GO:0009326 - formate dehydrogenase complex [Evidence IEA]
GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IEA]
GO:0015942 - formate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013397.2
GO:0005886 - plasma membrane [Evidence IEA]
GO:0015499 - formate transmembrane transporter activity [Evidence IEA]
GO:0015724 - formate transport [Evidence IEA]
formate/nitrite transporter family protein
COORDINATES: protein motif:HMM:NF017913.2
phosphate-starvation-inducible PsiE family protein
COORDINATES: protein motif:HMM:NF001667.0
COORDINATES: protein motif:HMM:NF027889.2
COORDINATES: similar to AA sequence:RefSeq:WP_018193887.1
GO:0042132 - fructose 1,6-bisphosphate 1-phosphatase activity [Evidence IEA]; GO:0004332 - fructose-bisphosphate aldolase activity [Evidence IEA]
GO:0006094 - gluconeogenesis [Evidence IEA]
fructose-1,6-bisphosphate aldolase/phosphatase
COORDINATES: protein motif:HMM:NF012905.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0019829 - ATPase-coupled monoatomic cation transmembrane transporter activity [Evidence IEA]; GO:0043169 - cation binding [Evidence IEA]; GO:0015662 - P-type ion transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF021287.2
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012673.2
COORDINATES: protein motif:HMM:TIGR00040.1
COORDINATES: protein motif:HMM:NF015651.2
lysylphosphatidylglycerol synthase transmembrane domain-containing protein
COORDINATES: protein motif:HMM:NF013739.2
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF005049.0
COORDINATES: protein motif:HMM:NF025042.2
COORDINATES: protein motif:HMM:NF005762.0
COORDINATES: protein motif:HMM:NF014052.2
COORDINATES: similar to AA sequence:RefSeq:WP_011752206.1
GO:0006325 - chromatin organization [Evidence IEA]
COORDINATES: protein motif:HMM:NF009945.0
ribosome biogenesis/translation initiation ATPase RLI
COORDINATES: protein motif:HMM:NF014231.2
COORDINATES: protein motif:HMM:NF014923.2
COORDINATES: protein motif:HMM:NF014003.2
COORDINATES: protein motif:HMM:TIGR03399.1
GO:0003963 - RNA-3'-phosphate cyclase activity [Evidence IEA]
GO:0006396 - RNA processing [Evidence IEA]
COORDINATES: protein motif:HMM:NF013250.2
GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0016780 - phosphotransferase activity, for other substituted phosphate groups [Evidence IEA]
GO:0008654 - phospholipid biosynthetic process [Evidence IEA]
CDP-alcohol phosphatidyltransferase family protein
COORDINATES: protein motif:HMM:TIGR00264.2
nascent polypeptide-associated complex protein
COORDINATES: protein motif:HMM:NF037435.2
COORDINATES: protein motif:HMM:TIGR03683.1
COORDINATES: protein motif:HMM:NF003099.0
COORDINATES: similar to AA sequence:RefSeq:WP_011751898.1
COORDINATES: similar to AA sequence:RefSeq:WP_018194469.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751900.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751902.1
COORDINATES: protein motif:HMM:NF011118.0
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]
GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03672.1
COORDINATES: protein motif:HMM:NF003261.0
COORDINATES: protein motif:HMM:NF014637.2
COORDINATES: protein motif:HMM:NF016581.2
FaeA/PapI family transcriptional regulator
COORDINATES: protein motif:HMM:NF006341.0
COORDINATES: similar to AA sequence:RefSeq:WP_011751909.1
GO:0015934 - large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011751910.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751911.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751912.1
COORDINATES: protein motif:HMM:NF006343.0
COORDINATES: protein motif:HMM:NF006332.0
COORDINATES: similar to AA sequence:RefSeq:WP_011751915.1
COORDINATES: similar to AA sequence:RefSeq:WP_018194730.1
COORDINATES: protein motif:HMM:NF003258.0
COORDINATES: protein motif:HMM:NF003312.0
COORDINATES: similar to AA sequence:RefSeq:WP_011751919.1
COORDINATES: protein motif:HMM:NF004326.0
GO:0046523 - S-methyl-5-thioribose-1-phosphate isomerase activity [Evidence IEA]
GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA]
S-methyl-5-thioribose-1-phosphate isomerase
COORDINATES: protein motif:HMM:NF014056.2
COORDINATES: protein motif:HMM:NF012766.2
GO:0004177 - aminopeptidase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0070006 - metalloaminopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013401.2
COORDINATES: protein motif:HMM:NF012255.2
COORDINATES: protein motif:HMM:NF015232.2
COORDINATES: protein motif:HMM:NF012382.2
COORDINATES: similar to AA sequence:RefSeq:WP_011751932.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751933.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751934.1
COORDINATES: similar to AA sequence:RefSeq:WP_011752202.1
COORDINATES: similar to AA sequence:RefSeq:WP_011752805.1
COORDINATES: protein motif:HMM:TIGR01928.1
GO:0016836 - hydro-lyase activity [Evidence IEA]
GO:0009234 - menaquinone biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02928.1
COORDINATES: protein motif:HMM:NF003229.0
COORDINATES: similar to AA sequence:RefSeq:WP_011751942.1
COORDINATES: similar to AA sequence:RefSeq:WP_020247627.1
COORDINATES: similar to AA sequence:RefSeq:WP_018194275.1
GO:0008452 - RNA ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF020897.2
COORDINATES: protein motif:HMM:NF001617.0
COORDINATES: protein motif:HMM:TIGR02151.1
GO:0004452 - isopentenyl-diphosphate delta-isomerase activity [Evidence IEA]
type 2 isopentenyl-diphosphate Delta-isomerase
COORDINATES: protein motif:HMM:TIGR04336.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751949.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]
COORDINATES: protein motif:HMM:NF003089.1
COORDINATES: similar to AA sequence:RefSeq:WP_018194914.1
COORDINATES: protein motif:HMM:NF005004.0
COORDINATES: similar to AA sequence:RefSeq:WP_018194912.1
COORDINATES: protein motif:HMM:NF001988.0
COORDINATES: similar to AA sequence:RefSeq:WP_011751956.1
COORDINATES: protein motif:HMM:TIGR01952.1
NusA-like transcription termination signal-binding factor
COORDINATES: protein motif:HMM:NF002172.0
COORDINATES: protein motif:HMM:TIGR02389.1
COORDINATES: similar to AA sequence:RefSeq:WP_018194705.1
COORDINATES: similar to AA sequence:RefSeq:WP_018194704.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751962.1
COORDINATES: protein motif:HMM:NF003211.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004820 - glycine-tRNA ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006426 - glycyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF037370.2
COORDINATES: similar to AA sequence:RefSeq:WP_011751965.1
COORDINATES: similar to AA sequence:RefSeq:WP_011752360.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0140662 - ATP-dependent protein folding chaperone [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02228.1
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012572.2
COORDINATES: similar to AA sequence:RefSeq:WP_018194846.1
GO:0008999 - peptide-alanine-alpha-N-acetyltransferase activity [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]; GO:0042254 - ribosome biogenesis [Evidence IEA]
ribosomal protein S18-alanine N-acetyltransferase
COORDINATES: protein motif:HMM:NF024850.2
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011751971.1
COORDINATES: protein motif:HMM:NF004417.0
COORDINATES: protein motif:HMM:NF015960.2
COORDINATES: similar to AA sequence:RefSeq:WP_011751977.1
COORDINATES: similar to AA sequence:RefSeq:WP_011752346.1
COORDINATES: protein motif:HMM:NF012478.2
GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]
FKBP-type peptidyl-prolyl cis-trans isomerase
COORDINATES: protein motif:HMM:NF015631.2
COORDINATES: similar to AA sequence:RefSeq:WP_011751981.1
GO:0000502 - proteasome complex [Evidence IEA]
GO:0004175 - endopeptidase activity [Evidence IEA]
GO:0010498 - proteasomal protein catabolic process [Evidence IEA]
archaeal proteasome endopeptidase complex subunit beta
COORDINATES: protein motif:HMM:TIGR03675.1
COORDINATES: protein motif:HMM:TIGR03684.1
COORDINATES: protein motif:HMM:NF014076.2
COORDINATES: protein motif:HMM:TIGR00177.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0030151 - molybdenum ion binding [Evidence IEA]
MogA/MoaB family molybdenum cofactor biosynthesis protein
COORDINATES: protein motif:HMM:NF014070.2
cyclic pyranopterin monophosphate synthase MoaC
COORDINATES: protein motif:HMM:NF014448.2
molybdenum cofactor biosynthesis protein MoaE
COORDINATES: protein motif:HMM:NF006399.0
COORDINATES: protein motif:HMM:TIGR01251.1
GO:0004749 - ribose phosphate diphosphokinase activity [Evidence IEA]
GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00143.1
GO:0003998 - acylphosphatase activity [Evidence IEA]
GO:0036211 - protein modification process [Evidence IEA]
COORDINATES: protein motif:HMM:NF016289.2
COORDINATES: protein motif:HMM:TIGR00342.1
GO:0140741 - tRNA U4 sulfurtransferase [Evidence IEA]
GO:0009228 - thiamine biosynthetic process [Evidence IEA]; GO:0006400 - tRNA modification [Evidence IEA]
COORDINATES: protein motif:HMM:NF003326.0
COORDINATES: similar to AA sequence:RefSeq:WP_011752539.1
COORDINATES: protein motif:HMM:NF016178.2
COORDINATES: protein motif:HMM:NF009687.0
COORDINATES: protein motif:HMM:TIGR02187.1
COORDINATES: protein motif:HMM:NF001924.0
GO:0004751 - ribose-5-phosphate isomerase activity [Evidence IEA]
GO:0006098 - pentose-phosphate shunt [Evidence IEA]
COORDINATES: protein motif:HMM:NF016164.2
COORDINATES: protein motif:HMM:TIGR01064.1
GO:0004743 - pyruvate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012492.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF020893.2
COORDINATES: protein motif:HMM:NF012376.2
COORDINATES: protein motif:HMM:NF006358.0
anaerobic ribonucleoside triphosphate reductase
COORDINATES: protein motif:HMM:NF039222.1
COORDINATES: protein motif:HMM:NF013647.2
GO:0033179 - proton-transporting V-type ATPase, V0 domain [Evidence IEA]
GO:0015078 - proton transmembrane transporter activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]
V-type ATPase 116kDa subunit family protein
COORDINATES: protein motif:HMM:NF012365.2
COORDINATES: protein motif:HMM:NF013935.2
COORDINATES: protein motif:HMM:NF003235.0
COORDINATES: similar to AA sequence:RefSeq:WP_011752016.1
COORDINATES: protein motif:HMM:NF013594.2
COORDINATES: protein motif:HMM:NF025006.2
carboxypeptidase-like regulatory domain-containing protein
COORDINATES: protein motif:HMM:NF012353.2
NFYB/HAP3 family transcription factor subunit
COORDINATES: protein motif:HMM:NF013029.2
COORDINATES: protein motif:HMM:NF015812.2
COORDINATES: protein motif:HMM:NF016787.2
COORDINATES: protein motif:HMM:TIGR01213.2
GO:0009982 - pseudouridine synthase activity [Evidence IEA]
GO:0031119 - tRNA pseudouridine synthesis [Evidence IEA]
tRNA pseudouridine(54/55) synthase Pus10
COORDINATES: protein motif:HMM:NF003303.0
COORDINATES: protein motif:HMM:TIGR00432.2
GO:0016763 - pentosyltransferase activity [Evidence IEA]
GO:0006400 - tRNA modification [Evidence IEA]
tRNA guanosine(15) transglycosylase TgtA
COORDINATES: protein motif:HMM:TIGR00307.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000314 - organellar small ribosomal subunit [Evidence IEA]
COORDINATES: protein motif:HMM:NF014032.2
signal recognition particle subunit SRP19/SEC65 family protein
COORDINATES: protein motif:HMM:TIGR00134.1
Glu-tRNA(Gln) amidotransferase subunit GatE
COORDINATES: similar to AA sequence:RefSeq:WP_011752035.1
Glu-tRNA(Gln) amidotransferase subunit GatD
COORDINATES: protein motif:HMM:NF006817.0
COORDINATES: protein motif:HMM:NF022908.2
COORDINATES: protein motif:HMM:NF025040.2
GO:0046983 - protein dimerization activity [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]
RpoL/Rpb11 RNA polymerase subunit family protein
COORDINATES: protein motif:HMM:NF025217.2
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013341.2
COORDINATES: protein motif:HMM:TIGR03671.1
COORDINATES: protein motif:HMM:NF021952.2
GO:0008664 - 2'-5'-RNA ligase activity [Evidence IEA]
GO:0008033 - tRNA processing [Evidence IEA]
COORDINATES: protein motif:HMM:NF016098.2
COORDINATES: protein motif:HMM:NF010340.0
COORDINATES: protein motif:HMM:NF012441.2
GO:0004590 - orotidine-5'-phosphate decarboxylase activity [Evidence IEA]
GO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process [Evidence IEA]
orotidine 5'-phosphate decarboxylase / HUMPS family protein
COORDINATES: protein motif:HMM:NF012600.2
transcription initiation factor IIB family protein
COORDINATES: protein motif:HMM:NF016308.2
COORDINATES: protein motif:HMM:NF011121.0
functions along with aFIB and aL7a; guides 2'-O-methylation of ribose to specific sites in RNAs; Derived by automated computational analysis using gene prediction method: Protein Homology.
Pre-mRNA processing ribonucleoprotein,-binding region
COORDINATES: similar to AA sequence:RefSeq:WP_018193741.1
fibrillarin-like rRNA/tRNA 2'-O-methyltransferase
COORDINATES: protein motif:HMM:NF024949.2
COORDINATES: protein motif:HMM:TIGR00308.1
GO:0004809 - tRNA (guanine-N2-)-methyltransferase activity [Evidence IEA]
GO:0030488 - tRNA methylation [Evidence IEA]
tRNA (guanine(10)-N(2))-dimethyltransferase
COORDINATES: protein motif:HMM:NF003067.0
translation initiation factor IF-2 subunit beta
COORDINATES: protein motif:HMM:NF017519.2
YiiX/YebB-like N1pC/P60 family cysteine hydrolase
COORDINATES: protein motif:HMM:NF012383.2
COORDINATES: protein motif:HMM:TIGR00511.1
GO:0016861 - intramolecular oxidoreductase activity, interconverting aldoses and ketoses [Evidence IEA]
GO:0046033 - AMP metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013197.2
COORDINATES: protein motif:HMM:NF013993.2
GO:0004526 - ribonuclease P activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013994.2
COORDINATES: protein motif:HMM:NF003269.0
COORDINATES: protein motif:HMM:NF014474.2
COORDINATES: similar to AA sequence:RefSeq:WP_011752066.1
COORDINATES: protein motif:HMM:NF012364.2
COORDINATES: protein motif:HMM:NF014044.2
COORDINATES: protein motif:HMM:NF013499.2
OB-fold nucleic acid binding domain-containing protein
COORDINATES: protein motif:HMM:NF012780.2
COORDINATES: nucleotide motif:Rfam:14.4:RF02540
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.4:RF01959
COORDINATES: protein motif:HMM:TIGR00148.1
GO:0016831 - carboxy-lyase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00405.1
COORDINATES: protein motif:HMM:NF001986.0
GO:0004585 - ornithine carbamoyltransferase activity [Evidence IEA]
GO:0042450 - arginine biosynthetic process via ornithine [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00414.1
GO:0004828 - serine-tRNA ligase activity [Evidence IEA]
GO:0006434 - seryl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011752083.1
COORDINATES: protein motif:HMM:NF001985.0
COORDINATES: protein motif:HMM:NF013146.2
COORDINATES: protein motif:HMM:NF002294.0
COORDINATES: protein motif:HMM:NF017867.2
GO:0003711 - transcription elongation factor activity [Evidence IEA]
transcription elongation factor subunit Spt4
COORDINATES: protein motif:HMM:NF006333.0
COORDINATES: nucleotide motif:Rfam:14.4:RF01857
archaeal-type; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_018194757.1
GO:0003886 - DNA (cytosine-5-)-methyltransferase activity [Evidence IEA]; GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011752143.1
COORDINATES: similar to AA sequence:RefSeq:WP_011752178.1
COORDINATES: protein motif:HMM:NF021421.2
COORDINATES: similar to AA sequence:RefSeq:WP_011752094.1
COORDINATES: similar to AA sequence:RefSeq:WP_018032376.1
COORDINATES: protein motif:HMM:NF003294.0
COORDINATES: similar to AA sequence:RefSeq:WP_011752091.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011752456.1
COORDINATES: similar to AA sequence:RefSeq:WP_018194890.1
COORDINATES: protein motif:HMM:NF014962.2
COORDINATES: protein motif:HMM:TIGR03674.1
COORDINATES: protein motif:HMM:TIGR00574.1
COORDINATES: protein motif:HMM:TIGR00064.1
GO:0003924 - GTPase activity [Evidence IEA]; GO:0005047 - signal recognition particle binding [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]
signal recognition particle-docking protein FtsY
COORDINATES: protein motif:HMM:TIGR00293.1
GO:0006457 - protein folding [Evidence IEA]
COORDINATES: protein motif:HMM:NF001981.1
COORDINATES: protein motif:HMM:NF003114.0
CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF017019.2
COORDINATES: protein motif:HMM:NF012652.2
type II/IV secretion system ATPase subunit
COORDINATES: protein motif:HMM:TIGR03330.1
GO:0004014 - adenosylmethionine decarboxylase activity [Evidence IEA]
GO:0008295 - spermidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011752124.1
COORDINATES: protein motif:HMM:NF024635.2
COORDINATES: protein motif:HMM:NF012694.2
type II secretion system F family protein
COORDINATES: protein motif:HMM:NF024118.2
COORDINATES: protein motif:HMM:NF012241.2
COORDINATES: protein motif:HMM:NF013450.2
COORDINATES: protein motif:HMM:NF001669.0
COORDINATES: similar to AA sequence:RefSeq:WP_011752116.1
COORDINATES: similar to AA sequence:RefSeq:WP_011752959.1
COORDINATES: similar to AA sequence:RefSeq:WP_011752126.1
GO:0061711 - N(6)-L-threonylcarbamoyladenine synthase activity [Evidence IEA]
KEOPS complex N(6)-L-threonylcarbamoyladenine synthase Kae1
COORDINATES: protein motif:HMM:NF011463.0
COORDINATES: protein motif:HMM:NF016842.2
GO:0030674 - protein-macromolecule adaptor activity [Evidence IEA]; GO:0043023 - ribosomal large subunit binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF016157.2
COORDINATES: protein motif:HMM:NF018455.2
COORDINATES: protein motif:HMM:NF015983.2
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF039904.1
COORDINATES: similar to AA sequence:RefSeq:WP_011752222.1
COORDINATES: protein motif:HMM:NF015946.2
COORDINATES: protein motif:HMM:NF003280.0
RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5
COORDINATES: similar to AA sequence:RefSeq:WP_011752136.1
COORDINATES: protein motif:HMM:NF003319.0
COORDINATES: protein motif:HMM:NF033788.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: protein motif:HMM:NF020287.2
COORDINATES: similar to AA sequence:RefSeq:WP_018194123.1
COORDINATES: similar to AA sequence:RefSeq:WP_011752145.1
COORDINATES: protein motif:HMM:NF002316.0
COORDINATES: protein motif:HMM:NF002258.1
COORDINATES: protein motif:HMM:NF014023.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012795.2
COORDINATES: protein motif:HMM:NF018444.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03127.1
GO:0016853 - isomerase activity [Evidence IEA]
GO:1901135 - carbohydrate derivative metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011752236.1
COORDINATES: similar to AA sequence:RefSeq:WP_011752157.1
COORDINATES: protein motif:HMM:NF006345.0
COORDINATES: similar to AA sequence:RefSeq:WP_011752133.1
COORDINATES: similar to AA sequence:RefSeq:WP_011752159.1
COORDINATES: similar to AA sequence:RefSeq:WP_018194723.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000315 - organellar large ribosomal subunit [Evidence IEA]
COORDINATES: protein motif:HMM:NF003219.0
COORDINATES: similar to AA sequence:RefSeq:WP_020269088.1
COORDINATES: protein motif:HMM:NF003058.0
COORDINATES: protein motif:HMM:TIGR00755.1
GO:0000179 - rRNA (adenine-N6,N6-)-dimethyltransferase activity [Evidence IEA]
16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
COORDINATES: similar to AA sequence:RefSeq:WP_018194923.1
COORDINATES: protein motif:HMM:NF013362.2
RsmB/NOP family class I SAM-dependent RNA methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011752167.1
COORDINATES: protein motif:HMM:NF017704.2
COORDINATES: protein motif:HMM:NF040949.1
COORDINATES: protein motif:HMM:NF016724.2
COORDINATES: similar to AA sequence:RefSeq:WP_011752171.1
COORDINATES: protein motif:HMM:NF013415.2
COORDINATES: similar to AA sequence:RefSeq:WP_011752173.1
COORDINATES: protein motif:HMM:NF012662.2
GO:0006614 - SRP-dependent cotranslational protein targeting to membrane [Evidence IEA]
signal recognition particle receptor subunit alpha
COORDINATES: protein motif:HMM:NF012955.2
COORDINATES: protein motif:HMM:NF002096.0
stress response translation initiation inhibitor YciH
COORDINATES: similar to AA sequence:RefSeq:WP_011752203.1
COORDINATES: protein motif:HMM:TIGR01230.1
GO:0008783 - agmatinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017026.2
COORDINATES: protein motif:HMM:TIGR03665.1
COORDINATES: protein motif:HMM:NF014342.2
COORDINATES: similar to AA sequence:RefSeq:WP_011752186.1
COORDINATES: protein motif:HMM:NF020031.2
COORDINATES: similar to AA sequence:RefSeq:WP_018194193.1
COORDINATES: protein motif:HMM:NF012899.2
COORDINATES: protein motif:HMM:TIGR03676.1
GO:0003747 - translation release factor activity [Evidence IEA]
GO:0006415 - translational termination [Evidence IEA]
COORDINATES: protein motif:HMM:NF015559.2
COORDINATES: protein motif:HMM:NF034126.3
exosome complex RNA-binding protein Csl4
COORDINATES: protein motif:HMM:NF021368.2
COORDINATES: protein motif:HMM:NF039482.1
COORDINATES: protein motif:HMM:NF011470.1
COORDINATES: protein motif:HMM:NF014516.2
COORDINATES: protein motif:HMM:NF012252.2
COORDINATES: similar to AA sequence:RefSeq:WP_011751935.1
COORDINATES: similar to AA sequence:RefSeq:WP_011751886.1
COORDINATES: protein motif:HMM:NF010335.0
COORDINATES: similar to AA sequence:RefSeq:WP_018193626.1
acetyl ornithine aminotransferase family protein
COORDINATES: protein motif:HMM:NF013707.2
GO:0016903 - oxidoreductase activity, acting on the aldehyde or oxo group of donors [Evidence IEA]
2-oxoacid:acceptor oxidoreductase family protein
COORDINATES: protein motif:HMM:TIGR02179.1
COORDINATES: protein motif:HMM:NF013974.2
pyruvate flavodoxin/ferredoxin oxidoreductase
COORDINATES: protein motif:HMM:NF008819.1
3-methyl-2-oxobutanoate dehydrogenase subunit beta
COORDINATES: protein motif:HMM:NF021370.2
COORDINATES: protein motif:HMM:TIGR00050.1
GO:0008173 - RNA methyltransferase activity [Evidence IEA]
GO:0009451 - RNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018193900.1
COORDINATES: protein motif:HMM:NF021475.2
COORDINATES: similar to AA sequence:RefSeq:WP_018193940.1
COORDINATES: protein motif:HMM:NF013209.2
COORDINATES: protein motif:HMM:NF013347.2
THUMP domain-containing class I SAM-dependent methyltransferase
COORDINATES: protein motif:HMM:NF015428.2
COORDINATES: protein motif:HMM:NF015545.2
COORDINATES: similar to AA sequence:RefSeq:WP_011752365.1
COORDINATES: protein motif:HMM:NF015965.2
COORDINATES: protein motif:HMM:NF016085.2
COORDINATES: protein motif:HMM:NF023395.2
COORDINATES: protein motif:HMM:NF003077.0
translation initiation factor IF-2 subunit gamma
COORDINATES: protein motif:HMM:NF002446.0
COORDINATES: protein motif:HMM:NF008957.0
GO:0004823 - leucine-tRNA ligase activity [Evidence IEA]
GO:0006429 - leucyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013046.2
COORDINATES: protein motif:HMM:TIGR02175.1
2-ketoisovalerate ferredoxin oxidoreductase subunit alpha
COORDINATES: protein motif:HMM:NF014794.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01054.1
GO:0003678 - DNA helicase activity [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]; GO:0003917 - DNA topoisomerase type I (single strand cut, ATP-independent) activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018194266.1
GO:0000309 - nicotinamide-nucleotide adenylyltransferase activity [Evidence IEA]
GO:0009435 - NAD biosynthetic process [Evidence IEA]
nicotinamide-nucleotide adenylyltransferase
Lrp/AsnC ligand binding domain-containing protein
COORDINATES: protein motif:HMM:NF015952.2
GTP-dependent dephospho-CoA kinase family protein
COORDINATES: protein motif:HMM:NF003282.1
GO:0000178 - exosome (RNase complex) [Evidence IEA]
GO:0006401 - RNA catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018194866.1
COORDINATES: protein motif:HMM:NF003181.1
exosome complex RNA-binding protein Rrp4
COORDINATES: protein motif:HMM:TIGR00291.1
COORDINATES: protein motif:HMM:NF003075.0
archaeal proteasome endopeptidase complex subunit alpha
COORDINATES: protein motif:HMM:NF015018.2
COORDINATES: similar to AA sequence:RefSeq:WP_018194642.1
COORDINATES: protein motif:HMM:NF005057.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0008986 - pyruvate, water dikinase activity [Evidence IEA]; GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]
GO:0016310 - phosphorylation [Evidence IEA]; GO:0006090 - pyruvate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00072.1
GO:0008233 - peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013242.2
twin-arginine translocation signal domain-containing protein
COORDINATES: protein motif:HMM:NF012592.2
GO:0016151 - nickel cation binding [Evidence IEA]
nickel-dependent hydrogenase large subunit
COORDINATES: protein motif:HMM:NF024581.2
COORDINATES: protein motif:HMM:NF013334.2
hydrogenase maturation nickel metallochaperone HypA
COORDINATES: protein motif:HMM:NF022077.2
COORDINATES: protein motif:HMM:NF001199.0
COORDINATES: protein motif:HMM:NF014684.2
GO:0015803 - branched-chain amino acid transport [Evidence IEA]
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_018194615.1
GO:0008150 - biological_process [Evidence IEA]
secondary thiamine-phosphate synthase enzyme YjbQ
COORDINATES: protein motif:HMM:NF020078.2
COORDINATES: similar to AA sequence:RefSeq:WP_011752540.1
COORDINATES: protein motif:HMM:NF040647.1
COORDINATES: protein motif:HMM:NF004037.0
COORDINATES: similar to AA sequence:RefSeq:WP_011752092.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR00004.1
COORDINATES: protein motif:HMM:TIGR01127.1
GO:0004794 - L-threonine ammonia-lyase activity [Evidence IEA]
GO:0006549 - isoleucine metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012515.2
COORDINATES: similar to AA sequence:RefSeq:WP_018194176.1
GO:0003746 - translation elongation factor activity [Evidence IEA]
GO:0006414 - translational elongation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011752284.1
COORDINATES: protein motif:HMM:TIGR01578.1
tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_020268884.1
GO:0004013 - adenosylhomocysteinase activity [Evidence IEA]
GO:0006730 - one-carbon metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011752287.1
COORDINATES: protein motif:HMM:TIGR00324.1
GO:0000214 - tRNA-intron endonuclease complex [Evidence IEA]
GO:0000213 - tRNA-intron endonuclease activity [Evidence IEA]
GO:0006388 - tRNA splicing, via endonucleolytic cleavage and ligation [Evidence IEA]
COORDINATES: protein motif:HMM:NF014011.2
GO:0003896 - DNA primase activity [Evidence IEA]
GO:0006269 - DNA replication, synthesis of RNA primer [Evidence IEA]
DNA primase small subunit domain-containing protein
COORDINATES: protein motif:HMM:NF016030.2
COORDINATES: similar to AA sequence:RefSeq:WP_011752293.1
GO:0030337 - DNA polymerase processivity factor activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
proliferating cell nuclear antigen (pcna)
COORDINATES: protein motif:HMM:TIGR01384.1
COORDINATES: protein motif:HMM:TIGR02173.1
COORDINATES: protein motif:HMM:TIGR00458.1
GO:0004815 - aspartate-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006422 - aspartyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF016330.2
COORDINATES: protein motif:HMM:NF016984.2
COORDINATES: similar to AA sequence:RefSeq:WP_011752301.1
GO:0047294 - phosphoglycerol geranylgeranyltransferase activity [Evidence IEA]
GO:0006650 - glycerophospholipid metabolic process [Evidence IEA]
geranylgeranylglyceryl/heptaprenylglyceryl phosphate synthase
COORDINATES: protein motif:HMM:NF015846.2
preprotein translocase subunit Sec61beta
COORDINATES: protein motif:HMM:NF009523.0
GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups [Evidence IEA]
COORDINATES: protein motif:HMM:NF014565.2
GO:0004576 - oligosaccharyl transferase activity [Evidence IEA]
GO:0006486 - protein glycosylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF009623.0
COORDINATES: protein motif:HMM:NF003062.0
translation initiation factor IF-2 subunit alpha
COORDINATES: protein motif:HMM:NF001629.0
COORDINATES: similar to AA sequence:RefSeq:WP_018193911.1
COORDINATES: similar to AA sequence:RefSeq:WP_011752314.1
translation elongation factor EF-1 subunit alpha
COORDINATES: protein motif:HMM:TIGR01046.1
COORDINATES: protein motif:HMM:TIGR00310.1
COORDINATES: protein motif:HMM:NF001647.0
Sjogren's syndrome/scleroderma autoantigen 1 family protein
COORDINATES: protein motif:HMM:NF014021.2
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
nucleotidyltransferase domain-containing protein
GO:0005524 - ATP binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF003142.0
COORDINATES: protein motif:HMM:NF013528.2
GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014030.2
GO:0016272 - prefoldin complex [Evidence IEA]
GO:0051082 - unfolded protein binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00442.1
GO:0004821 - histidine-tRNA ligase activity [Evidence IEA]
GO:0006427 - histidyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02128.1
bifunctional phosphoglucose/phosphomannose isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_011752328.1
COORDINATES: protein motif:HMM:NF011481.0
COORDINATES: protein motif:HMM:NF010367.0
COORDINATES: protein motif:HMM:NF003218.0
COORDINATES: protein motif:HMM:NF003336.0
COORDINATES: protein motif:HMM:NF028207.2
COORDINATES: similar to AA sequence:RefSeq:WP_011751979.1
COORDINATES: protein motif:HMM:TIGR00501.1
COORDINATES: protein motif:HMM:NF011161.0
COORDINATES: protein motif:HMM:NF016382.2
COORDINATES: similar to AA sequence:RefSeq:WP_018193625.1
COORDINATES: protein motif:HMM:TIGR00283.1
COORDINATES: protein motif:HMM:NF013322.2
COORDINATES: protein motif:HMM:NF016982.2
tRNA(Met) cytidine acetyltransferase TmcA
COORDINATES: protein motif:HMM:NF013621.2
COORDINATES: protein motif:HMM:TIGR00522.1
GO:0004164 - diphthine synthase activity [Evidence IEA]
GO:0017183 - peptidyl-diphthamide biosynthetic process from peptidyl-histidine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018194268.1
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: protein motif:HMM:NF037434.2
COORDINATES: similar to AA sequence:RefSeq:WP_018193614.1
COORDINATES: protein motif:HMM:NF025052.2
COORDINATES: similar to AA sequence:RefSeq:WP_011752230.1
COORDINATES: protein motif:HMM:NF016048.2
COORDINATES: protein motif:HMM:NF017088.2
COORDINATES: protein motif:HMM:NF019075.2
COORDINATES: protein motif:HMM:TIGR00451.1
COORDINATES: protein motif:HMM:TIGR00270.2
COORDINATES: protein motif:HMM:TIGR03156.1
COORDINATES: similar to AA sequence:RefSeq:WP_011752376.1
tRNA (cytidine(56)-2'-O)-methyltransferase
COORDINATES: protein motif:HMM:NF014102.2
TFIIB-type zinc ribbon-containing protein
COORDINATES: protein motif:HMM:NF019886.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma factor-like helix-turn-helix DNA-binding protein
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018193510.1
COORDINATES: protein motif:HMM:NF013567.2
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
COORDINATES: protein motif:HMM:TIGR02032.1
winged helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF025001.2
COORDINATES: protein motif:HMM:NF013462.2
COORDINATES: similar to AA sequence:RefSeq:WP_011751369.1
TFIIB-type zinc finger domain-containing protein
COORDINATES: protein motif:HMM:NF013582.2
GO:0000398 - mRNA splicing, via spliceosome [Evidence IEA]; GO:0008033 - tRNA processing [Evidence IEA]
U6 snRNA-associated Sm-like protein LSm6
COORDINATES: protein motif:HMM:NF003365.0
COORDINATES: protein motif:HMM:NF016219.2
COORDINATES: protein motif:HMM:NF019846.2
COORDINATES: protein motif:HMM:NF020014.2
COORDINATES: protein motif:HMM:NF041120.1
COORDINATES: protein motif:HMM:NF014037.2
COORDINATES: similar to AA sequence:RefSeq:WP_011752415.1
COORDINATES: protein motif:HMM:NF018637.2
GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
arsenic metallochaperone ArsD family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011752417.1
COORDINATES: similar to AA sequence:RefSeq:WP_011752421.1
COORDINATES: protein motif:HMM:NF016352.2
COORDINATES: protein motif:HMM:TIGR01534.1
GO:0006094 - gluconeogenesis [Evidence IEA]; GO:0019682 - glyceraldehyde-3-phosphate metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
type I glyceraldehyde-3-phosphate dehydrogenase
GO:0046872 - metal ion binding [Evidence IEA]; GO:0042578 - phosphoric ester hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025273.2
carboxypeptidase regulatory-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020268938.1
GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00126.1
GO:0004139 - deoxyribose-phosphate aldolase activity [Evidence IEA]
GO:0009264 - deoxyribonucleotide catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018194875.1
COORDINATES: protein motif:HMM:NF004720.0
COORDINATES: protein motif:HMM:NF013920.2
Zn-ribbon domain-containing OB-fold protein
COORDINATES: protein motif:HMM:NF012389.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0004618 - phosphoglycerate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019581.2
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03336.1
GO:0043805 - indolepyruvate ferredoxin oxidoreductase activity [Evidence IEA]
indolepyruvate ferredoxin oxidoreductase subunit alpha
indolepyruvate oxidoreductase subunit beta
COORDINATES: protein motif:HMM:TIGR00467.1
GO:0017101 - aminoacyl-tRNA synthetase multienzyme complex [Evidence IEA]
GO:0004824 - lysine-tRNA ligase activity [Evidence IEA]
GO:0006430 - lysyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF020660.2
COORDINATES: protein motif:HMM:NF019924.2
COORDINATES: similar to AA sequence:RefSeq:WP_018194046.1
COORDINATES: similar to AA sequence:RefSeq:WP_018194047.1
COORDINATES: protein motif:HMM:NF016310.2
aconitase X catalytic domain-containing protein
COORDINATES: protein motif:HMM:NF014091.2
COORDINATES: similar to AA sequence:RefSeq:WP_018194014.1
GO:0004844 - uracil DNA N-glycosylase activity [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF037270.2
COORDINATES: protein motif:HMM:NF014527.2
class I SAM-dependent methyltransferase family protein
COORDINATES: protein motif:HMM:NF014877.2
COORDINATES: protein motif:HMM:NF014092.2
GO:0034220 - monoatomic ion transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF014093.2
GO:0033178 - proton-transporting two-sector ATPase complex, catalytic domain [Evidence IEA]
GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence IEA]
V-type ATP synthase subunit E family protein
COORDINATES: protein motif:HMM:NF015899.2
COORDINATES: similar to AA sequence:RefSeq:WP_011752482.1
COORDINATES: protein motif:HMM:TIGR00408.1
GO:0004827 - proline-tRNA ligase activity [Evidence IEA]
GO:0006433 - prolyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01575.1
COORDINATES: protein motif:HMM:NF013429.2
sugar phosphate isomerase/epimerase family protein
COORDINATES: protein motif:HMM:NF041097.1
GO:0006020 - inositol metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014670.2
COORDINATES: similar to AA sequence:RefSeq:WP_011752489.1
GO:0047964 - glyoxylate reductase (NAD+) activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF020733.2
GO:0003906 - DNA-(apurinic or apyrimidinic site) endonuclease activity [Evidence IEA]; GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds [Evidence IEA]
phosphoglucomutase/phosphomannomutase alpha/beta/subunit
COORDINATES: protein motif:HMM:NF014049.2
COORDINATES: protein motif:HMM:NF014062.2
COORDINATES: similar to AA sequence:RefSeq:WP_018194581.1
COORDINATES: protein motif:HMM:NF016408.2
COORDINATES: protein motif:HMM:NF024248.2
winged helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF013916.2
COORDINATES: protein motif:HMM:NF016050.2
COORDINATES: protein motif:HMM:NF015509.2
COORDINATES: protein motif:HMM:NF013292.2
COORDINATES: similar to AA sequence:RefSeq:WP_018194773.1
GO:0000166 - nucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF021490.2
COORDINATES: protein motif:HMM:TIGR00457.1
GO:0004816 - asparagine-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0006421 - asparaginyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF015956.2
GO:0046914 - transition metal ion binding [Evidence IEA]
GO:0055072 - iron ion homeostasis [Evidence IEA]; GO:0006811 - monoatomic ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00437.1
GO:0015093 - ferrous iron transmembrane transporter activity [Evidence IEA]
GO:0006826 - iron ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02495.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]; GO:0051353 - positive regulation of oxidoreductase activity [Evidence IEA]
anaerobic ribonucleoside-triphosphate reductase activating protein
COORDINATES: protein motif:HMM:TIGR03972.1
COORDINATES: protein motif:HMM:NF003270.0
GO:0003677 - DNA binding [Evidence IEA]; GO:0000014 - single-stranded DNA endodeoxyribonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF008820.0
COORDINATES: protein motif:HMM:TIGR03710.1
2-oxoacid:acceptor oxidoreductase subunit alpha
COORDINATES: protein motif:HMM:NF014088.2
GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018193756.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018194034.1
COORDINATES: protein motif:HMM:NF014244.2
COORDINATES: protein motif:HMM:NF013987.2
COORDINATES: protein motif:HMM:NF015940.2
COORDINATES: protein motif:HMM:NF024793.2
COORDINATES: protein motif:HMM:NF013979.2
pyruvoyl-dependent arginine decarboxylase
COORDINATES: similar to AA sequence:RefSeq:WP_011751996.1
COORDINATES: protein motif:HMM:TIGR00537.1
COORDINATES: protein motif:HMM:NF013999.2
COORDINATES: protein motif:HMM:NF014752.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018194472.1
COORDINATES: protein motif:HMM:NF013632.2
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF003302.0
GO:0004807 - triose-phosphate isomerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00322.1
GO:0043364 - glycyl-radical enzyme activating activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014605.2
COORDINATES: protein motif:HMM:NF013311.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013962.2
COORDINATES: protein motif:HMM:NF009057.0
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0004834 - tryptophan synthase activity [Evidence IEA]
GO:0000162 - tryptophan biosynthetic process [Evidence IEA]; GO:0006568 - tryptophan metabolic process [Evidence IEA]
TrpB-like pyridoxal phosphate-dependent enzyme
COORDINATES: protein motif:HMM:TIGR00549.1
GO:0004496 - mevalonate kinase activity [Evidence IEA]
GO:0019287 - isopentenyl diphosphate biosynthetic process, mevalonate pathway [Evidence IEA]; GO:0016126 - sterol biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011752364.1
COORDINATES: similar to AA sequence:RefSeq:WP_011752806.1
COORDINATES: protein motif:HMM:NF001208.0
GO:0003987 - acetate-CoA ligase activity [Evidence IEA]
GO:0019427 - acetyl-CoA biosynthetic process from acetate [Evidence IEA]
COORDINATES: protein motif:HMM:NF012589.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0019200 - carbohydrate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012360.2
GO:0016746 - acyltransferase activity [Evidence IEA]; GO:0120225 - coenzyme A binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF011430.0
GO:0015031 - protein transport [Evidence IEA]
twin-arginine translocase TatA/TatE family subunit
COORDINATES: protein motif:HMM:NF002243.0
COORDINATES: protein motif:HMM:TIGR00729.1
GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012692.2
COORDINATES: similar to AA sequence:RefSeq:WP_011752568.1
GO:0004817 - cysteine-tRNA ligase activity [Evidence IEA]
GO:0006423 - cysteinyl-tRNA aminoacylation [Evidence IEA]
amino acid ABC transporter ATP-binding protein
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF012707.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF024808.2
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]; GO:0019808 - polyamine binding [Evidence IEA]
GO:0015846 - polyamine transport [Evidence IEA]
spermidine/putrescine ABC transporter substrate-binding protein
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: protein motif:HMM:NF013077.2
COORDINATES: protein motif:HMM:NF011396.0
COORDINATES: protein motif:HMM:NF013348.2
COORDINATES: protein motif:HMM:NF014087.2
COORDINATES: protein motif:HMM:TIGR00024.1
COORDINATES: protein motif:HMM:TIGR00532.1
GO:0004420 - hydroxymethylglutaryl-CoA reductase (NADPH) activity [Evidence IEA]
GO:0016054 - organic acid catabolic process [Evidence IEA]
hydroxymethylglutaryl-CoA reductase, degradative
COORDINATES: protein motif:HMM:NF014566.2
GO:0070007 - glutamic-type endopeptidase activity [Evidence IEA]
GO:0071586 - CAAX-box protein processing [Evidence IEA]
CPBP family glutamic-type intramembrane protease
COORDINATES: similar to AA sequence:RefSeq:WP_018194045.1
COORDINATES: protein motif:HMM:NF013434.2
COORDINATES: protein motif:HMM:NF037640.2
COORDINATES: protein motif:HMM:NF024247.2
COORDINATES: protein motif:HMM:NF015409.2
COORDINATES: protein motif:HMM:NF016765.2
COORDINATES: protein motif:HMM:NF012472.2
COORDINATES: protein motif:HMM:NF013340.2
YbhB/YbcL family Raf kinase inhibitor-like protein
COORDINATES: protein motif:HMM:NF021607.2
COORDINATES: protein motif:HMM:NF012524.2
COORDINATES: protein motif:HMM:TIGR01979.1
GO:0031071 - cysteine desulfurase activity [Evidence IEA]
GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
COORDINATES: protein motif:HMM:NF003210.0
phenylalanine--tRNA ligase subunit alpha
COORDINATES: protein motif:HMM:TIGR00471.1
GO:0009328 - phenylalanine-tRNA ligase complex [Evidence IEA]
GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IEA]
GO:0006432 - phenylalanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF024988.2
COORDINATES: protein motif:HMM:NF015147.2
COORDINATES: protein motif:HMM:NF024486.2
COORDINATES: protein motif:HMM:NF015947.2
COORDINATES: protein motif:HMM:NF025019.2
COORDINATES: protein motif:HMM:NF021375.2
COORDINATES: protein motif:HMM:NF025034.2
COORDINATES: similar to AA sequence:RefSeq:WP_011753032.1
COORDINATES: protein motif:HMM:NF014762.2
GO:0046983 - protein dimerization activity [Evidence IEA]; GO:0046914 - transition metal ion binding [Evidence IEA]
iron dependent repressor, metal binding and dimerization domain protein
COORDINATES: protein motif:HMM:NF018357.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0140658 - ATP-dependent chromatin remodeler activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:NF024058.2
COORDINATES: protein motif:HMM:NF014019.2
COORDINATES: similar to AA sequence:RefSeq:WP_011753349.1
COORDINATES: similar to AA sequence:RefSeq:WP_011753348.1
COORDINATES: protein motif:HMM:NF014620.2
NifB/NifX family molybdenum-iron cluster-binding protein
COORDINATES: protein motif:HMM:NF015410.2
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017020.2
COORDINATES: similar to AA sequence:RefSeq:WP_011752669.1
GO:0008254 - 3'-nucleotidase activity [Evidence IEA]; GO:0008253 - 5'-nucleotidase activity [Evidence IEA]
GO:0006950 - response to stress [Evidence IEA]
COORDINATES: protein motif:HMM:NF010248.0
COORDINATES: protein motif:HMM:NF012678.2
GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF037100.2
COORDINATES: protein motif:HMM:NF016555.2
GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF015442.2
COORDINATES: protein motif:HMM:TIGR04380.1
GO:0050112 - inositol 2-dehydrogenase activity [Evidence IEA]
GO:0019310 - inositol catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF020083.2
COORDINATES: protein motif:HMM:NF006813.0
COORDINATES: similar to AA sequence:RefSeq:WP_018194197.1
DNA repair and recombination protein RadA
COORDINATES: protein motif:HMM:NF025384.2
COORDINATES: protein motif:HMM:NF003301.0
COORDINATES: protein motif:HMM:NF013843.2
GO:0004798 - thymidylate kinase activity [Evidence IEA]
GO:0015949 - nucleobase-containing small molecule interconversion [Evidence IEA]
phospholipase D-like domain-containing protein
COORDINATES: protein motif:HMM:NF040865.1
GO:0002161 - aminoacyl-tRNA editing activity [Evidence IEA]
GO:0006419 - alanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF024880.2
COORDINATES: similar to AA sequence:RefSeq:WP_018194002.1
COORDINATES: protein motif:HMM:NF014683.2
GO:0015129 - lactate transmembrane transporter activity [Evidence IEA]
GO:0015727 - lactate transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01473.1
GO:0008495 - protoheme IX farnesyltransferase activity [Evidence IEA]
GO:0006783 - heme biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012514.2
COORDINATES: protein motif:HMM:NF004617.0
COORDINATES: similar to AA sequence:RefSeq:WP_011753106.1
GO:0008795 - NAD+ synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00306.2
COORDINATES: protein motif:HMM:NF017959.2
COORDINATES: protein motif:HMM:NF020133.2
COORDINATES: similar to AA sequence:RefSeq:WP_011752717.1
COORDINATES: protein motif:HMM:NF015418.2
COORDINATES: protein motif:HMM:NF011068.0
GO:0032324 - molybdopterin cofactor biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00975.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0015415 - ATPase-coupled phosphate ion transmembrane transporter activity [Evidence IEA]; GO:0042301 - phosphate ion binding [Evidence IEA]
phosphate ABC transporter substrate-binding protein PstS
COORDINATES: protein motif:HMM:TIGR02138.1
GO:0015415 - ATPase-coupled phosphate ion transmembrane transporter activity [Evidence IEA]
phosphate ABC transporter permease subunit PstC
COORDINATES: protein motif:HMM:TIGR00974.1
GO:0006817 - phosphate ion transport [Evidence IEA]
phosphate ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:NF000848.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0003922 - GMP synthase (glutamine-hydrolyzing) activity [Evidence IEA]; GO:0016462 - pyrophosphatase activity [Evidence IEA]
GO:0006177 - GMP biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012690.2
COORDINATES: protein motif:HMM:NF014010.2
COORDINATES: protein motif:HMM:NF014273.2
ParB N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF024898.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01957.1
GO:1990204 - oxidoreductase complex [Evidence IEA]
GO:0008137 - NADH dehydrogenase (ubiquinone) activity [Evidence IEA]; GO:0048038 - quinone binding [Evidence IEA]
GO:0022900 - electron transport chain [Evidence IEA]
NADH-quinone oxidoreductase subunit B family protein
NADH-ubiquinone oxidoreductase subunit 4L
COORDINATES: protein motif:HMM:NF004729.0
COORDINATES: protein motif:HMM:NF012549.2
COORDINATES: protein motif:HMM:NF004739.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]; GO:0048038 - quinone binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF004741.0
NADH-quinone oxidoreductase subunit NuoH
COORDINATES: protein motif:HMM:NF026048.2
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: protein motif:HMM:NF012709.2
COORDINATES: protein motif:HMM:NF004320.0
GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
GO:0042773 - ATP synthesis coupled electron transport [Evidence IEA]
NADH-quinone oxidoreductase subunit NuoK
COORDINATES: protein motif:HMM:NF012348.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0004356 - glutamate-ammonia ligase activity [Evidence IEA]
GO:0006542 - glutamine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF002805.0
COORDINATES: protein motif:HMM:TIGR01003.1
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01417.1
GO:0008965 - phosphoenolpyruvate-protein phosphotransferase activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]; GO:0006808 - regulation of nitrogen utilization [Evidence IEA]
phosphoenolpyruvate--protein phosphotransferase
COORDINATES: protein motif:HMM:TIGR00221.1
GO:0008448 - N-acetylglucosamine-6-phosphate deacetylase activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]
N-acetylglucosamine-6-phosphate deacetylase
COORDINATES: protein motif:HMM:NF014893.2
COORDINATES: protein motif:HMM:NF015769.2
GO:0008982 - protein-N(PI)-phosphohistidine-sugar phosphotransferase activity [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
COORDINATES: protein motif:HMM:NF015567.2
COORDINATES: protein motif:HMM:NF015570.2
PTS system mannose/fructose/sorbose family transporter subunit IID
COORDINATES: protein motif:HMM:NF016972.2
phosphoribosyltransferase family protein
COORDINATES: protein motif:HMM:NF010167.0
GO:0015833 - peptide transport [Evidence IEA]
energy-coupling factor transporter ATPase
COORDINATES: protein motif:HMM:NF012345.2
COORDINATES: protein motif:HMM:TIGR00290.1
COORDINATES: similar to AA sequence:RefSeq:WP_011753335.1
GO:0004565 - beta-galactosidase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00209.1
GO:0008108 - UDP-glucose:hexose-1-phosphate uridylyltransferase activity [Evidence IEA]
GO:0006012 - galactose metabolic process [Evidence IEA]
galactose-1-phosphate uridylyltransferase
COORDINATES: protein motif:HMM:NF012509.2
COORDINATES: protein motif:HMM:NF016326.2
GO:0046872 - metal ion binding [Evidence IEA]; GO:0008758 - UDP-2,3-diacylglucosamine hydrolase activity [Evidence IEA]
GO:0009245 - lipid A biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01297.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
cation diffusion facilitator family transporter
COORDINATES: protein motif:HMM:NF012602.2
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015851.2
NrfD/PsrC family molybdoenzyme membrane anchor subunit
COORDINATES: protein motif:HMM:NF013307.2
succinate dehydrogenase cytochrome b subunit
succinate dehydrogenase cytochrome b-556 subunit
COORDINATES: protein motif:HMM:TIGR00384.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: protein motif:HMM:NF000756.0
GO:0004370 - glycerol kinase activity [Evidence IEA]
GO:0006071 - glycerol metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012314.2
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024571.2
COORDINATES: protein motif:HMM:NF015889.2
COORDINATES: protein motif:HMM:NF013245.2
COORDINATES: protein motif:HMM:NF013784.2
GO:0015930 - glutamate synthase activity [Evidence IEA]; GO:0016638 - oxidoreductase activity, acting on the CH-NH2 group of donors [Evidence IEA]
GO:0006537 - glutamate biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF005052.0
COORDINATES: protein motif:HMM:NF013756.2
GO:0010181 - FMN binding [Evidence IEA]; GO:0016646 - oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018194828.1
COORDINATES: protein motif:HMM:TIGR00336.1
GO:0004588 - orotate phosphoribosyltransferase activity [Evidence IEA]
GO:0009220 - pyrimidine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011752828.1
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
sugar ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF015971.2
COORDINATES: protein motif:HMM:NF015588.2
COORDINATES: similar to AA sequence:RefSeq:WP_011752820.1
GO:0004070 - aspartate carbamoyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011752821.1
aspartate carbamoyltransferase regulatory subunit
COORDINATES: protein motif:HMM:TIGR00857.1
COORDINATES: protein motif:HMM:NF000796.0
dihydroorotate dehydrogenase electron transfer subunit
COORDINATES: protein motif:HMM:NF005574.0
GO:0004152 - dihydroorotate dehydrogenase activity [Evidence IEA]
GO:0006221 - pyrimidine nucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF003792.0
GO:0003883 - CTP synthase activity [Evidence IEA]
GO:0006241 - CTP biosynthetic process [Evidence IEA]; GO:0006221 - pyrimidine nucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013116.2
COORDINATES: protein motif:HMM:NF008653.0
COORDINATES: protein motif:HMM:NF040396.1
COORDINATES: protein motif:HMM:NF015000.2
COORDINATES: similar to AA sequence:RefSeq:WP_018193528.1
COORDINATES: protein motif:HMM:NF024091.2
COORDINATES: protein motif:HMM:NF013697.2
COORDINATES: protein motif:HMM:NF024319.2
COORDINATES: protein motif:HMM:NF013226.2
COORDINATES: protein motif:HMM:NF014043.2
COORDINATES: protein motif:HMM:NF014025.2
COORDINATES: protein motif:HMM:NF017380.2
COORDINATES: protein motif:HMM:NF013088.2
COORDINATES: protein motif:HMM:NF013570.2
COORDINATES: protein motif:HMM:NF014625.2
COORDINATES: protein motif:HMM:NF024910.2
COORDINATES: protein motif:HMM:NF013117.2
GO:0008381 - mechanosensitive monoatomic ion channel activity [Evidence IEA]
mechanosensitive ion channel family protein
COORDINATES: protein motif:HMM:NF014325.2
GO:0006813 - potassium ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF015400.2
saccharopine dehydrogenase NADP-binding domain-containing protein
COORDINATES: protein motif:HMM:NF014135.2
COORDINATES: protein motif:HMM:TIGR01978.1
COORDINATES: protein motif:HMM:TIGR01980.1
GO:0005198 - structural molecule activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013614.2
SufD family Fe-S cluster assembly protein
COORDINATES: protein motif:HMM:NF024799.2
COORDINATES: protein motif:HMM:NF017207.2
monomethylamine:corrinoid methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011753130.1
COORDINATES: protein motif:HMM:NF013175.2
COORDINATES: similar to AA sequence:RefSeq:WP_011752155.1
COORDINATES: protein motif:HMM:NF013592.2
GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011753392.1
COORDINATES: protein motif:HMM:NF003252.0
GO:0016984 - ribulose-bisphosphate carboxylase activity [Evidence IEA]
type III ribulose-bisphosphate carboxylase
COORDINATES: protein motif:HMM:NF012993.2
carbon-nitrogen hydrolase family protein
COORDINATES: protein motif:HMM:NF015999.2
COORDINATES: protein motif:HMM:NF012925.2
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01718.1
GO:0004731 - purine-nucleoside phosphorylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018194360.1
RpiB/LacA/LacB family sugar-phosphate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_018193416.1
COORDINATES: similar to AA sequence:RefSeq:WP_018193415.1
COORDINATES: similar to AA sequence:RefSeq:WP_018193414.1
COORDINATES: similar to AA sequence:RefSeq:WP_018193574.1
NTP transferase domain-containing protein
COORDINATES: protein motif:HMM:NF014671.2
GO:0016783 - sulfurtransferase activity [Evidence IEA]
formate dehydrogenase accessory sulfurtransferase FdhD
COORDINATES: protein motif:HMM:NF024212.2
COORDINATES: protein motif:HMM:NF014029.2
COORDINATES: protein motif:HMM:TIGR02619.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011752928.1
GO:0008964 - phosphoenolpyruvate carboxylase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013776.2
COORDINATES: protein motif:HMM:TIGR01897.1
COORDINATES: protein motif:HMM:NF024420.2
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF037142.2
COORDINATES: protein motif:HMM:NF039183.1
COORDINATES: protein motif:HMM:NF024206.2
ankyrin repeat domain-containing protein
COORDINATES: protein motif:HMM:NF017159.2
COORDINATES: protein motif:HMM:TIGR02581.1
COORDINATES: protein motif:HMM:NF015728.2
RAMP superfamily CRISPR-associated protein
COORDINATES: similar to AA sequence:RefSeq:WP_011752125.1
COORDINATES: protein motif:HMM:NF012931.2
COORDINATES: protein motif:HMM:NF013986.2
BadF/BadG/BcrA/BcrD ATPase family protein
COORDINATES: protein motif:HMM:NF017729.2
COORDINATES: protein motif:HMM:NF021551.2
CRISPR system precrRNA processing endoribonuclease RAMP protein Cas6
COORDINATES: protein motif:HMM:NF013857.2
COORDINATES: protein motif:HMM:NF023885.2
type III-B CRISPR-associated protein Cas10/Cmr2
type III-B CRISPR module RAMP protein Cmr6
COORDINATES: protein motif:HMM:NF021237.2
type III-B CRISPR module-associated protein Cmr5
COORDINATES: protein motif:HMM:TIGR02580.1
type III-B CRISPR module RAMP protein Cmr4
COORDINATES: protein motif:HMM:TIGR00287.1
GO:0004520 - endodeoxyribonuclease activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01573.1
GO:0004521 - endoribonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF037322.2
type I-D CRISPR-associated protein Cas7/Csc2
COORDINATES: protein motif:HMM:NF021006.2
COORDINATES: similar to AA sequence:RefSeq:WP_018193700.1
COORDINATES: protein motif:HMM:NF017812.2
COORDINATES: protein motif:HMM:TIGR01891.1
CPBP family intramembrane metalloprotease
COORDINATES: protein motif:HMM:TIGR01587.1
GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF021239.2
COORDINATES: protein motif:HMM:TIGR01874.1
type I-A CRISPR-associated protein Cas5a
COORDINATES: protein motif:HMM:TIGR02583.1
type I-A CRISPR-associated protein Cas7/Csa2
COORDINATES: protein motif:HMM:TIGR01884.1
CRISPR-associated RAMP Csm5 family protein
COORDINATES: protein motif:HMM:TIGR02582.1
type III-A CRISPR-associated RAMP protein Csm3
COORDINATES: protein motif:HMM:NF037785.2
COORDINATES: similar to AA sequence:RefSeq:WP_011752637.1
COORDINATES: protein motif:HMM:NF014910.2
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]
COORDINATES: protein motif:HMM:NF002291.0
nicotinamide mononucleotide deamidase-related protein
COORDINATES: protein motif:HMM:NF013713.2
COORDINATES: protein motif:HMM:NF025925.2
COORDINATES: protein motif:HMM:NF025033.2
COORDINATES: protein motif:HMM:NF023568.2
COORDINATES: protein motif:HMM:NF012311.2
COORDINATES: protein motif:HMM:NF020933.2
DNA double-strand break repair nuclease NurA
COORDINATES: protein motif:HMM:NF012512.2
GO:0006535 - cysteine biosynthetic process from serine [Evidence IEA]
COORDINATES: protein motif:HMM:NF024110.2
COORDINATES: protein motif:HMM:TIGR01188.1
daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:NF024116.2
COORDINATES: protein motif:HMM:NF013460.2
cytochrome b/b6 domain-containing protein
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016625 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor [Evidence IEA]
aldehyde ferredoxin oxidoreductase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011753163.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_011753124.1
COORDINATES: protein motif:HMM:NF014693.2
COORDINATES: protein motif:HMM:NF013648.2
iron ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF013219.2
COORDINATES: protein motif:HMM:TIGR01647.1
plasma-membrane proton-efflux P-type ATPase
COORDINATES: protein motif:HMM:NF024498.2
thioredoxin fold domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011753021.1
COORDINATES: protein motif:HMM:NF020123.2
GO:0008379 - thioredoxin peroxidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF038032.1
type II toxin-antitoxin system CcdA family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_011752709.1
GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
nitrilase-related carbon-nitrogen hydrolase
COORDINATES: protein motif:HMM:TIGR03698.1
geranylgeranylglycerol-phosphate geranylgeranyltransferase
COORDINATES: protein motif:HMM:NF012356.2
COORDINATES: protein motif:HMM:TIGR02177.1
COORDINATES: protein motif:HMM:NF012522.2
COORDINATES: protein motif:HMM:NF016246.2
COORDINATES: similar to AA sequence:RefSeq:WP_011753081.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF012804.2
class II aldolase/adducin family protein
COORDINATES: protein motif:HMM:NF012791.2
GO:0032559 - adenyl ribonucleotide binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF018012.2
GO:0015948 - methanogenesis [Evidence IEA]
trimethylamine methyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011752875.1
COORDINATES: protein motif:HMM:NF015949.2
COORDINATES: protein motif:HMM:NF015753.2
GO:0008556 - P-type potassium transmembrane transporter activity [Evidence IEA]
potassium-transporting ATPase subunit KdpA
COORDINATES: protein motif:HMM:TIGR01497.1
GO:0031004 - potassium ion-transporting ATPase complex [Evidence IEA]
potassium-transporting ATPase subunit KdpB
COORDINATES: protein motif:HMM:NF014699.2
COORDINATES: protein motif:HMM:NF024628.2
COORDINATES: protein motif:HMM:NF013694.2
COORDINATES: similar to AA sequence:RefSeq:WP_011752840.1
COORDINATES: protein motif:HMM:TIGR00121.1
GO:0004077 - biotin-[acetyl-CoA-carboxylase] ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014669.2
GO:0015225 - biotin transmembrane transporter activity [Evidence IEA]
GO:0015878 - biotin transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018193643.1
COORDINATES: similar to AA sequence:RefSeq:WP_011753155.1
COORDINATES: protein motif:HMM:NF014026.2
glycoside hydrolase family 3 C-terminal domain-containing protein
COORDINATES: protein motif:HMM:TIGR01439.1
COORDINATES: protein motif:HMM:NF015536.2
GO:0070004 - cysteine-type exopeptidase activity [Evidence IEA]; GO:0016805 - dipeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF021355.2
beta-propeller domain-containing protein
COORDINATES: protein motif:HMM:NF014080.2
COORDINATES: similar to AA sequence:RefSeq:WP_011753076.1
COORDINATES: protein motif:HMM:NF014100.2
COORDINATES: protein motif:HMM:NF013791.2
GO:0070069 - cytochrome complex [Evidence IEA]
GO:0009055 - electron transfer activity [Evidence IEA]
GO:0019646 - aerobic electron transport chain [Evidence IEA]
GO:0070069 - cytochrome complex [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF027582.2
hydrogenase 3 maturation endopeptidase HyCI
COORDINATES: protein motif:HMM:NF023401.2
COORDINATES: protein motif:HMM:NF028222.2
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: protein motif:HMM:NF015048.2
COORDINATES: protein motif:HMM:NF023096.2
COORDINATES: protein motif:HMM:NF012318.2
trypsin-like peptidase domain-containing protein
COORDINATES: protein motif:HMM:NF003253.0
GO:0005525 - GTP binding [Evidence IEA]; GO:0004611 - phosphoenolpyruvate carboxykinase activity [Evidence IEA]; GO:0017076 - purine nucleotide binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF015557.2
COORDINATES: protein motif:HMM:NF010182.0
ECF-type riboflavin transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF016365.2
COORDINATES: protein motif:HMM:NF019375.2
TrmB family transcriptional regulator sugar-binding domain-containing protein
COORDINATES: protein motif:HMM:NF014675.2
COORDINATES: protein motif:HMM:TIGR01187.1
L-fucose isomerase and-like proteins-like
COORDINATES: protein motif:HMM:NF013132.2
GO:0008509 - monoatomic anion transmembrane transporter activity [Evidence IEA]
GO:0006820 - monoatomic anion transport [Evidence IEA]
DASS family sodium-coupled anion symporter
COORDINATES: protein motif:HMM:NF003104.0
2,3-bisphosphoglycerate-independent phosphoglycerate mutase
COORDINATES: protein motif:HMM:NF009668.0
GO:0051920 - peroxiredoxin activity [Evidence IEA]; GO:0008379 - thioredoxin peroxidase activity [Evidence IEA]
GO:0098869 - cellular oxidant detoxification [Evidence IEA]
COORDINATES: protein motif:HMM:NF024904.2
COORDINATES: protein motif:HMM:NF012607.2
COORDINATES: protein motif:HMM:NF024917.2
COORDINATES: protein motif:HMM:NF009676.0
GO:0030163 - protein catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012744.2
COORDINATES: protein motif:HMM:TIGR01247.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024742.2
COORDINATES: protein motif:HMM:NF024117.2
PLP-dependent cysteine synthase family protein
COORDINATES: protein motif:HMM:NF012621.2
heavy-metal-associated domain-containing protein
COORDINATES: protein motif:HMM:NF014082.2
COORDINATES: protein motif:HMM:NF012711.2
COORDINATES: protein motif:HMM:TIGR02124.1
hydrogenase expression/formation protein HypE
COORDINATES: protein motif:HMM:NF013611.2
HypC/HybG/HupF family hydrogenase formation chaperone
COORDINATES: protein motif:HMM:NF014034.2
GO:0016530 - metallochaperone activity [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0046316 - gluconokinase activity [Evidence IEA]
GO:0046177 - D-gluconate catabolic process [Evidence IEA]; GO:0016310 - phosphorylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF012904.2
dihydrodipicolinate synthase family protein
COORDINATES: protein motif:HMM:NF016831.2
D-isomer specific 2-hydroxyacid dehydrogenase family protein
COORDINATES: protein motif:HMM:NF015297.2
COORDINATES: protein motif:HMM:NF024921.2
substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF014672.2
COORDINATES: protein motif:HMM:NF022995.2
COORDINATES: protein motif:HMM:NF013256.2
GO:0004559 - alpha-mannosidase activity [Evidence IEA]
GO:0006013 - mannose metabolic process [Evidence IEA]
glycoside hydrolase family 38 C-terminal domain-containing protein
COORDINATES: protein motif:HMM:TIGR00258.1
GO:0016462 - pyrophosphatase activity [Evidence IEA]
GO:0046128 - purine ribonucleoside metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01487.1
GO:0008967 - phosphoglycolate phosphatase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012792.2
COORDINATES: protein motif:HMM:NF013097.2
COORDINATES: similar to AA sequence:RefSeq:WP_011753307.1
GO:0052855 - ADP-dependent NAD(P)H-hydrate dehydratase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF040816.1
GO:0004332 - fructose-bisphosphate aldolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017760.2
COORDINATES: protein motif:HMM:NF013827.2
rhomboid family intramembrane serine protease
COORDINATES: protein motif:HMM:NF006330.0
COORDINATES: protein motif:HMM:NF013795.2
COORDINATES: protein motif:HMM:NF016115.2
GO:0016812 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011751756.1
COORDINATES: protein motif:HMM:NF018232.2
COORDINATES: similar to AA sequence:RefSeq:WP_011753326.1
COORDINATES: protein motif:HMM:NF014788.2
COORDINATES: protein motif:HMM:TIGR01685.1
COORDINATES: similar to AA sequence:RefSeq:WP_018194320.1
COORDINATES: protein motif:HMM:NF012377.2
GO:0071704 - organic substance metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013561.2
COORDINATES: protein motif:HMM:NF041004.1
COORDINATES: protein motif:HMM:NF013806.2
COORDINATES: protein motif:HMM:NF012312.2
COORDINATES: similar to AA sequence:RefSeq:WP_018194084.1
COORDINATES: similar to AA sequence:RefSeq:WP_018194085.1
COORDINATES: similar to AA sequence:RefSeq:WP_011752657.1
COORDINATES: similar to AA sequence:RefSeq:WP_011752656.1
COORDINATES: protein motif:HMM:NF039417.1
COORDINATES: protein motif:HMM:NF024700.2
COORDINATES: protein motif:HMM:TIGR01221.1
GO:0008830 - dTDP-4-dehydrorhamnose 3,5-epimerase activity [Evidence IEA]
GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00236.1
GO:0008761 - UDP-N-acetylglucosamine 2-epimerase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)
COORDINATES: protein motif:HMM:NF024831.2
COORDINATES: protein motif:HMM:TIGR03026.1
GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
UDP-glucose/GDP-mannose dehydrogenase family protein
COORDINATES: protein motif:HMM:NF012745.2
COORDINATES: protein motif:HMM:NF022773.2
COORDINATES: similar to AA sequence:RefSeq:WP_011752889.1
COORDINATES: protein motif:HMM:NF021560.2
COORDINATES: protein motif:HMM:NF012483.2
COORDINATES: protein motif:HMM:NF024832.2
COORDINATES: protein motif:HMM:NF014007.2
energy-coupling factor ABC transporter permease
COORDINATES: protein motif:HMM:NF024588.2
COORDINATES: protein motif:HMM:NF019346.2
COORDINATES: protein motif:HMM:NF012321.2
COORDINATES: protein motif:HMM:NF017442.2
COORDINATES: similar to AA sequence:RefSeq:WP_018194670.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014101.2
COORDINATES: protein motif:HMM:NF003251.0
type II glyceraldehyde-3-phosphate dehydrogenase
COORDINATES: protein motif:HMM:NF009409.0
COORDINATES: protein motif:HMM:NF012334.2
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF025776.2
COORDINATES: protein motif:HMM:NF018696.2
COORDINATES: protein motif:HMM:NF012563.2
GO:0008184 - glycogen phosphorylase activity [Evidence IEA]
glycogen/starch/alpha-glucan phosphorylase
COORDINATES: protein motif:HMM:NF014582.2
GO:0046873 - metal ion transmembrane transporter activity [Evidence IEA]
GO:0030001 - metal ion transport [Evidence IEA]
GO:0008081 - phosphoric diester hydrolase activity [Evidence IEA]
GO:0006629 - lipid metabolic process [Evidence IEA]
glycerophosphodiester phosphodiesterase family protein
COORDINATES: protein motif:HMM:NF017200.2
COORDINATES: protein motif:HMM:NF014316.2
COORDINATES: similar to AA sequence:RefSeq:WP_018193830.1
COORDINATES: protein motif:HMM:NF024257.2
COORDINATES: protein motif:HMM:NF024138.2
COORDINATES: protein motif:HMM:NF024595.2
COORDINATES: protein motif:HMM:NF024733.2
GO:0004176 - ATP-dependent peptidase activity [Evidence IEA]
BREX system Lon protease-like protein BrxL
COORDINATES: protein motif:HMM:NF019464.2
COORDINATES: protein motif:HMM:NF013379.2
COORDINATES: similar to AA sequence:RefSeq:WP_011753208.1
COORDINATES: protein motif:HMM:NF024703.2
COORDINATES: protein motif:HMM:TIGR00057.1
GO:0061710 - L-threonylcarbamoyladenylate synthase [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00230.1
GO:0000023 - maltose metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013847.2
methionine synthase vitamin-B12 independent
COORDINATES: protein motif:HMM:TIGR00176.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0005525 - GTP binding [Evidence IEA]
molybdopterin-guanine dinucleotide biosynthesis protein B
COORDINATES: protein motif:HMM:NF006212.0
COORDINATES: protein motif:HMM:NF013094.2
GO:0008641 - ubiquitin-like modifier activating enzyme activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF004947.0
COORDINATES: protein motif:HMM:TIGR00706.1
GO:0006465 - signal peptide processing [Evidence IEA]
COORDINATES: protein motif:HMM:NF013996.2
GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018193601.1
COORDINATES: protein motif:HMM:NF024771.2
COORDINATES: protein motif:HMM:TIGR00112.1
GO:0004735 - pyrroline-5-carboxylate reductase activity [Evidence IEA]
GO:0006561 - proline biosynthetic process [Evidence IEA]