Mycobacteroides abscessus strain GZ002 plasmid pMabS_GZ002, complete sequence.
Mycobacteroides abscessus (Mycobacterium abscessus)
Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacteroides.
Comparative genomics and methylome analysis in Mycobacterium abscessus clinical isolates
Submitted (27-NOV-2018) State Key Laboratory of Respiratory Disease (SKLRD), Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences (CAS), 190 Kaiyuan Ave, Room A132, Science Park, Huangpu District, Guangzhou, Guangdong 510530, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP034180.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. version 4.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/13/2022 06:40:45\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,022\nCDSs (total) :: 4,969\nGenes (coding) :: 4,940\nCDSs (with protein) :: 4,940\nGenes (RNA) :: 53\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 3\nPseudo Genes (total) :: 29\nCDSs (without protein) :: 29\nPseudo Genes (ambiguous residues) :: 0 of 29\nPseudo Genes (frameshifted) :: 18 of 29\nPseudo Genes (incomplete) :: 13 of 29\nPseudo Genes (internal stop) :: 2 of 29\nPseudo Genes (multiple problems) :: 4 of 29\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_012390405.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017555453.1
COORDINATES: similar to AA sequence:RefSeq:WP_003414599.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006680475.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012296232.1
COORDINATES: similar to AA sequence:RefSeq:WP_012296233.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_012296234.1
GO:0016152 - mercury (II) reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012390401.1
COORDINATES: similar to AA sequence:RefSeq:WP_012296236.1
COORDINATES: similar to AA sequence:RefSeq:WP_012296237.1
COORDINATES: similar to AA sequence:RefSeq:WP_012296238.1
COORDINATES: similar to AA sequence:RefSeq:WP_012296239.1
COORDINATES: similar to AA sequence:RefSeq:WP_012296240.1
COORDINATES: similar to AA sequence:RefSeq:WP_012296241.1
COORDINATES: similar to AA sequence:RefSeq:WP_012296242.1
COORDINATES: similar to AA sequence:RefSeq:WP_012296243.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.