Flammeovirga yaeyamensis strain NBRC:100898 chromosome 2, complete sequence.
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Flammeovirgaceae; Flammeovirga.
Comparative genomic studies on the polysaccharide-degrading batcterial strains of the Flammeovirga genus
Submitted (29-MAY-2021) Shandong University, National Glycoengineering Research Center, No. 72, Binhai Road, Jimo District, Qingdao, Shandong 266237, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP076133.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 01-APR-2021\nAssembly Method :: Unicycler v. 0.4.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 345.0x\nSequencing Technology :: Illumina NovaSeq; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/06/2022 22:23:26\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 5,700\nCDSs (total) :: 5,583\nGenes (coding) :: 5,552\nCDSs (with protein) :: 5,552\nGenes (RNA) :: 117\nrRNAs :: 8, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 8, 8 (5S, 16S, 23S)\ntRNAs :: 91\nncRNAs :: 2\nPseudo Genes (total) :: 31\nCDSs (without protein) :: 31\nPseudo Genes (ambiguous residues) :: 0 of 31\nPseudo Genes (frameshifted) :: 2 of 31\nPseudo Genes (incomplete) :: 26 of 31\nPseudo Genes (internal stop) :: 4 of 31\nPseudo Genes (multiple problems) :: 1 of 31\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_020529332.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012311.2
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02145.1
COORDINATES: protein motif:HMM:NF025680.2
RagB/SusD family nutrient uptake outer membrane protein
COORDINATES: protein motif:HMM:TIGR04056.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF024242.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: protein motif:HMM:NF018288.2
COORDINATES: similar to AA sequence:RefSeq:WP_015332712.1
COORDINATES: protein motif:HMM:NF012692.2
COORDINATES: protein motif:HMM:NF027232.2
COORDINATES: protein motif:HMM:TIGR04183.1
T9SS type A sorting domain-containing protein
COORDINATES: protein motif:HMM:NF013080.2
COORDINATES: protein motif:HMM:NF013955.2
GO:0045203 - integral component of cell outer membrane [Evidence IEA]
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0071702 - organic substance transport [Evidence IEA]
SusC/RagA family TonB-linked outer membrane protein
COORDINATES: similar to AA sequence:RefSeq:WP_020531655.1
COORDINATES: protein motif:HMM:NF039835.1
COORDINATES: protein motif:HMM:NF040218.1
COORDINATES: similar to AA sequence:RefSeq:WP_014022096.1
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013455049.1
COORDINATES: similar to AA sequence:RefSeq:WP_008201678.1
COORDINATES: protein motif:HMM:NF016300.2
COORDINATES: protein motif:HMM:NF013799.2
GO:0008484 - sulfuric ester hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF040521.1
C45 family autoproteolytic acyltransferase/hydolase
COORDINATES: protein motif:HMM:TIGR01180.1
GO:0030246 - carbohydrate binding [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF025673.2
COORDINATES: protein motif:HMM:NF012200.0
choice-of-anchor D domain-containing protein
COORDINATES: protein motif:HMM:NF012589.2
GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]
COORDINATES: protein motif:HMM:NF002203.0
GO:0008740 - L-rhamnose isomerase activity [Evidence IEA]; GO:0030145 - manganese ion binding [Evidence IEA]
GO:0019299 - rhamnose metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014376.2
COORDINATES: protein motif:HMM:NF027363.2
COORDINATES: similar to AA sequence:RefSeq:WP_020527266.1
COORDINATES: similar to AA sequence:RefSeq:WP_013928805.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
GO:0019516 - lactate oxidation [Evidence IEA]
LutB/LldF family L-lactate oxidation iron-sulfur protein
COORDINATES: similar to AA sequence:RefSeq:WP_008199075.1
COORDINATES: protein motif:HMM:NF015692.2
ADP-ribosylglycohydrolase family protein
COORDINATES: protein motif:HMM:NF019592.2
COORDINATES: protein motif:HMM:NF018884.2
GO:0016791 - phosphatase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012271.2
GO:0005515 - protein binding [Evidence IEA]
fibronectin type III domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015029993.1
COORDINATES: similar to AA sequence:RefSeq:WP_010608391.1
GO:0016021 - integral component of membrane [Evidence IEA]
GO:0015144 - carbohydrate transmembrane transporter activity [Evidence IEA]
GO:0034219 - carbohydrate transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015027640.1
GO:0004747 - ribokinase activity [Evidence IEA]
GO:0019303 - D-ribose catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009580695.1
GO:0006777 - Mo-molybdopterin cofactor biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014018275.1
COORDINATES: protein motif:HMM:NF015863.2
PepSY-associated TM helix domain-containing protein
COORDINATES: protein motif:HMM:NF002937.0
GO:0030729 - acetoacetate-CoA ligase activity [Evidence IEA]
GO:0019287 - isopentenyl diphosphate biosynthetic process, mevalonate pathway [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01840.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009580896.1
COORDINATES: similar to AA sequence:RefSeq:WP_009196163.1
COORDINATES: similar to AA sequence:RefSeq:WP_013455747.1
GO:0004316 - 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
3-oxoacyl-[acyl-carrier-protein] reductase
COORDINATES: similar to AA sequence:RefSeq:WP_013455741.1
COORDINATES: similar to AA sequence:RefSeq:WP_017732100.1
COORDINATES: protein motif:HMM:NF019315.2
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: protein motif:HMM:NF016994.2
GO:0046677 - response to antibiotic [Evidence IEA]
COORDINATES: protein motif:HMM:NF024599.2
COORDINATES: protein motif:HMM:NF026250.2
COORDINATES: protein motif:HMM:NF012356.2
COORDINATES: similar to AA sequence:RefSeq:WP_009580718.1
COORDINATES: similar to AA sequence:RefSeq:WP_008200771.1
O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase
COORDINATES: protein motif:HMM:NF015953.2
COORDINATES: similar to AA sequence:RefSeq:WP_009183871.1
COORDINATES: protein motif:HMM:NF014533.2
GO:0009294 - DNA-mediated transformation [Evidence IEA]
COORDINATES: protein motif:HMM:NF025054.2
COORDINATES: protein motif:HMM:NF019581.2
COORDINATES: protein motif:HMM:NF013069.2
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01730.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_009195500.1
GO:0022900 - electron transport chain [Evidence IEA]
cytochrome c nitrite reductase small subunit
COORDINATES: similar to AA sequence:RefSeq:WP_009186445.1
ammonia-forming cytochrome c nitrite reductase
COORDINATES: protein motif:HMM:NF013725.2
GO:0020037 - heme binding [Evidence IEA]
GO:0017004 - cytochrome complex assembly [Evidence IEA]
COORDINATES: protein motif:HMM:NF012314.2
COORDINATES: similar to AA sequence:RefSeq:WP_009183755.1
phosphoribosylformylglycinamidine synthase
COORDINATES: protein motif:HMM:NF022995.2
COORDINATES: protein motif:HMM:NF013868.2
COORDINATES: protein motif:HMM:NF024970.2
COORDINATES: protein motif:HMM:TIGR00377.1
COORDINATES: protein motif:HMM:NF013122.2
COORDINATES: protein motif:HMM:NF014433.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0015446 - ATPase-coupled arsenite transmembrane transporter activity [Evidence IEA]
GO:0071722 - detoxification of arsenic-containing substance [Evidence IEA]
TRC40/GET3/ArsA family transport-energizing ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_007655692.1
GO:0008490 - arsenite secondary active transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020528267.1
COORDINATES: similar to AA sequence:RefSeq:WP_002980225.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: protein motif:HMM:NF014522.2
COORDINATES: protein motif:HMM:NF018028.2
COORDINATES: protein motif:HMM:NF022039.2
LytTR family DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF018305.2
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:NF019335.2
carboxypeptidase-like regulatory domain-containing protein
COORDINATES: protein motif:HMM:NF024579.2
COORDINATES: protein motif:HMM:NF013300.2
GO:0004560 - alpha-L-fucosidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015811707.1
COORDINATES: protein motif:HMM:NF016394.2
COORDINATES: protein motif:HMM:NF024824.2
COORDINATES: protein motif:HMM:TIGR01182.1
bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
COORDINATES: protein motif:HMM:NF021390.2
COORDINATES: protein motif:HMM:NF012933.2
DNA-3-methyladenine glycosylase 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018343661.1
GO:0003824 - catalytic activity [Evidence IEA]
NAD-dependent epimerase/dehydratase family protein
COORDINATES: protein motif:HMM:NF018755.2
COORDINATES: similar to AA sequence:RefSeq:WP_013453930.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
glycoside hydrolase family 3 C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF021596.2
COORDINATES: similar to AA sequence:RefSeq:WP_018474801.1
COORDINATES: similar to AA sequence:RefSeq:WP_015331706.1
GO:0008939 - nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity [Evidence IEA]
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]
nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
COORDINATES: protein motif:HMM:TIGR00317.1
GO:0051073 - adenosylcobinamide-GDP ribazoletransferase activity [Evidence IEA]
adenosylcobinamide-GDP ribazoletransferase
COORDINATES: protein motif:HMM:TIGR03162.1
GO:0043755 - alpha-ribazole phosphatase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014080.2
COORDINATES: similar to AA sequence:RefSeq:WP_013452530.1
COORDINATES: protein motif:HMM:NF019272.2
COORDINATES: protein motif:HMM:NF028300.2
COORDINATES: protein motif:HMM:NF012377.2
GO:0071704 - organic substance metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020530689.1
COORDINATES: similar to AA sequence:RefSeq:WP_005785018.1
COORDINATES: similar to AA sequence:RefSeq:WP_020530687.1
COORDINATES: protein motif:HMM:NF014237.2
COORDINATES: protein motif:HMM:NF024181.2
COORDINATES: protein motif:HMM:NF020337.2
COORDINATES: protein motif:HMM:NF017077.2
COORDINATES: protein motif:HMM:NF016840.2
COORDINATES: protein motif:HMM:NF014523.2
COORDINATES: protein motif:HMM:NF016973.2
COORDINATES: similar to AA sequence:RefSeq:WP_018341666.1
COORDINATES: protein motif:HMM:NF025391.2
COORDINATES: protein motif:HMM:NF013964.2
COORDINATES: protein motif:HMM:NF013714.2
COORDINATES: similar to AA sequence:RefSeq:WP_013927049.1
COORDINATES: similar to AA sequence:RefSeq:WP_009578545.1
HipA N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013927047.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF015585.2
COORDINATES: protein motif:HMM:NF012515.2
COORDINATES: similar to AA sequence:RefSeq:WP_010852628.1
TonB-dependent receptor plug domain-containing protein
COORDINATES: protein motif:HMM:NF026067.2
COORDINATES: protein motif:HMM:NF021028.2
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF012862.2
COORDINATES: protein motif:HMM:NF025092.2
COORDINATES: protein motif:HMM:NF024811.2
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014385.2
COORDINATES: similar to AA sequence:RefSeq:WP_014020494.1
COORDINATES: protein motif:HMM:NF015387.2
COORDINATES: similar to AA sequence:RefSeq:WP_008199740.1
COORDINATES: protein motif:HMM:NF014156.2
COORDINATES: protein motif:HMM:NF013239.2
COORDINATES: protein motif:HMM:NF008277.0
COORDINATES: similar to AA sequence:RefSeq:WP_010856833.1
COORDINATES: protein motif:HMM:NF012931.2
COORDINATES: similar to AA sequence:RefSeq:WP_020526150.1
COORDINATES: protein motif:HMM:NF025670.2
COORDINATES: protein motif:HMM:NF013718.2
COORDINATES: protein motif:HMM:NF018659.2
SdiA-regulated domain-containing protein
COORDINATES: protein motif:HMM:NF012376.2
GO:0019867 - outer membrane [Evidence IEA]
COORDINATES: protein motif:HMM:NF040152.1
COORDINATES: protein motif:HMM:NF012437.2
adenylate/guanylate cyclase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013928903.1
COORDINATES: similar to AA sequence:RefSeq:WP_013928902.1
COORDINATES: similar to AA sequence:RefSeq:WP_014022098.1
COORDINATES: similar to AA sequence:RefSeq:WP_020530273.1
COORDINATES: similar to AA sequence:RefSeq:WP_018475178.1
COORDINATES: similar to AA sequence:RefSeq:WP_014232231.1
mandelate racemase/muconate lactonizing enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020530276.1
GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011575334.1
COORDINATES: similar to AA sequence:RefSeq:WP_009282044.1
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020530279.1
COORDINATES: protein motif:HMM:NF037292.2
COORDINATES: similar to AA sequence:RefSeq:WP_020533537.1
COORDINATES: protein motif:HMM:NF021349.2
COORDINATES: protein motif:HMM:NF025253.2
COORDINATES: protein motif:HMM:NF024812.2
COORDINATES: similar to AA sequence:RefSeq:WP_017730211.1
COORDINATES: protein motif:HMM:NF013126.2
COORDINATES: protein motif:HMM:NF014273.2
ParB N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF024252.2
COORDINATES: protein motif:HMM:NF013235.2
COORDINATES: similar to AA sequence:RefSeq:WP_018476865.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]
DNA-directed RNA polymerase subunit alpha
COORDINATES: protein motif:HMM:NF021231.2
COORDINATES: protein motif:HMM:NF015284.2
L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_009195499.1
GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0019752 - carboxylic acid metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF019365.2
COORDINATES: protein motif:HMM:TIGR00710.1
COORDINATES: protein motif:HMM:NF036804.2
COORDINATES: similar to AA sequence:RefSeq:WP_013343673.1
GO:0008743 - L-threonine 3-dehydrogenase activity [Evidence IEA]
GO:0006567 - threonine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010856599.1
GO:0008890 - glycine C-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012523.2
COORDINATES: protein motif:HMM:NF025574.2
COORDINATES: protein motif:HMM:NF014850.2
COORDINATES: protein motif:HMM:NF014502.2
GO:0009341 - beta-galactosidase complex [Evidence IEA]
GO:0004565 - beta-galactosidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF020111.2
COORDINATES: protein motif:HMM:NF014232.2
COORDINATES: similar to AA sequence:RefSeq:WP_020533771.1
COORDINATES: protein motif:HMM:NF019908.2
COORDINATES: protein motif:HMM:NF012211.1
COORDINATES: similar to AA sequence:RefSeq:WP_008201135.1
COORDINATES: similar to AA sequence:RefSeq:WP_018474064.1
COORDINATES: protein motif:HMM:NF028182.2
putative phage abortive infection protein
COORDINATES: similar to AA sequence:RefSeq:WP_018473516.1
COORDINATES: protein motif:HMM:NF021622.2
COORDINATES: protein motif:HMM:NF019348.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF036995.2
DUF1016 N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020533639.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012655.2
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF026220.2
COORDINATES: protein motif:HMM:NF012873.2
thioester reductase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004156187.1
COORDINATES: protein motif:HMM:NF014566.2
type II CAAX endopeptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014798197.1
GO:0004359 - glutaminase activity [Evidence IEA]
GO:0006541 - glutamine metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012422.2
COORDINATES: similar to AA sequence:RefSeq:WP_018473468.1
COORDINATES: similar to AA sequence:RefSeq:WP_018473469.1
COORDINATES: similar to AA sequence:RefSeq:WP_018473821.1
COORDINATES: protein motif:HMM:NF024602.2
COORDINATES: similar to AA sequence:RefSeq:WP_014798632.1
Rpn family recombination-promoting nuclease/putative transposase
COORDINATES: similar to AA sequence:RefSeq:WP_020530272.1
COORDINATES: similar to AA sequence:RefSeq:WP_014771018.1
COORDINATES: protein motif:HMM:NF027666.2
COORDINATES: similar to AA sequence:RefSeq:WP_020529062.1
COORDINATES: protein motif:HMM:NF013530.2
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF012398.2
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF018561.2
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF022142.2
COORDINATES: protein motif:HMM:NF018452.2
COORDINATES: protein motif:HMM:NF015674.2
COORDINATES: similar to AA sequence:RefSeq:WP_020529814.1
COORDINATES: similar to AA sequence:RefSeq:WP_014796477.1
GO:0008452 - RNA ligase activity [Evidence IEA]
GO:0006396 - RNA processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014019237.1
COORDINATES: protein motif:HMM:NF019632.2
ClbS/DfsB family four-helix bundle protein
COORDINATES: similar to AA sequence:RefSeq:WP_015264825.1
COORDINATES: similar to AA sequence:RefSeq:WP_002697857.1
COORDINATES: protein motif:HMM:NF012354.2
COORDINATES: protein motif:HMM:NF019474.2
COORDINATES: protein motif:HMM:NF016107.2
COORDINATES: protein motif:HMM:NF022143.2
COORDINATES: protein motif:HMM:NF024206.2
ankyrin repeat domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010852856.1
COORDINATES: similar to AA sequence:RefSeq:WP_005824469.1
COORDINATES: similar to AA sequence:RefSeq:WP_019988013.1
COORDINATES: protein motif:HMM:NF012257.2
Crp/Fnr family transcriptional regulator
COORDINATES: protein motif:HMM:NF037170.2
COORDINATES: similar to AA sequence:RefSeq:WP_011585933.1
COORDINATES: similar to AA sequence:RefSeq:WP_002699184.1
COORDINATES: protein motif:HMM:NF012770.2
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: protein motif:HMM:NF024180.2
COORDINATES: similar to AA sequence:RefSeq:WP_009184536.1
COORDINATES: protein motif:HMM:NF019350.2
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010856950.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_010856949.1
COORDINATES: similar to AA sequence:RefSeq:WP_015265403.1
COORDINATES: protein motif:HMM:NF014851.2
COORDINATES: protein motif:HMM:NF018877.2
COORDINATES: similar to AA sequence:RefSeq:WP_019947232.1
COORDINATES: protein motif:HMM:NF025919.2
COORDINATES: protein motif:HMM:NF027309.2
COORDINATES: protein motif:HMM:NF037660.2
COORDINATES: similar to AA sequence:RefSeq:WP_020529884.1
COORDINATES: protein motif:HMM:NF016162.2
COORDINATES: similar to AA sequence:RefSeq:WP_009580516.1
COORDINATES: protein motif:HMM:TIGR01068.1
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019604.2
COORDINATES: protein motif:HMM:NF016658.2
COORDINATES: similar to AA sequence:RefSeq:WP_015266353.1
COORDINATES: protein motif:HMM:NF025885.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0008134 - transcription factor binding [Evidence IEA]
sigma 54-interacting transcriptional regulator
COORDINATES: protein motif:HMM:NF017026.2
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018473777.1
COORDINATES: protein motif:HMM:NF024212.2
COORDINATES: protein motif:HMM:NF014573.2
COORDINATES: protein motif:HMM:NF016830.2
COORDINATES: protein motif:HMM:NF013413.2
COORDINATES: protein motif:HMM:NF012925.2
COORDINATES: protein motif:HMM:NF024308.2
COORDINATES: protein motif:HMM:NF016497.2
COORDINATES: similar to AA sequence:RefSeq:WP_018473515.1
COORDINATES: protein motif:HMM:NF012797.2
COORDINATES: protein motif:HMM:NF025330.2
COORDINATES: protein motif:HMM:NF014643.2
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_020602956.1
COORDINATES: similar to AA sequence:RefSeq:WP_018473509.1
COORDINATES: similar to AA sequence:RefSeq:WP_020531863.1
COORDINATES: protein motif:HMM:NF014116.2
GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]
carbohydrate binding domain-containing protein
hybrid sensor histidine kinase/response regulator transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_020530262.1
COORDINATES: protein motif:HMM:NF013400.2
COORDINATES: similar to AA sequence:RefSeq:WP_020526809.1
COORDINATES: similar to AA sequence:RefSeq:WP_018474139.1
GO:0016829 - lyase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF023714.2
COORDINATES: similar to AA sequence:RefSeq:WP_020533098.1
COORDINATES: similar to AA sequence:RefSeq:WP_018475691.1
COORDINATES: similar to AA sequence:RefSeq:WP_018475693.1
COORDINATES: protein motif:HMM:NF024120.2
glycosyl hydrolase family 28-related protein
COORDINATES: protein motif:HMM:NF024950.2
COORDINATES: protein motif:HMM:NF013391.2
COORDINATES: similar to AA sequence:RefSeq:WP_019988292.1
PDDEXK nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010853773.1
COORDINATES: similar to AA sequence:RefSeq:WP_018475695.1
right-handed parallel beta-helix repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018475198.1
COORDINATES: protein motif:HMM:NF015180.2
COORDINATES: protein motif:HMM:NF013098.2
COORDINATES: protein motif:HMM:NF021161.2
COORDINATES: protein motif:HMM:NF027224.2
COORDINATES: similar to AA sequence:RefSeq:WP_018473378.1
COORDINATES: similar to AA sequence:RefSeq:WP_010853380.1
family 78 glycoside hydrolase catalytic domain
malectin domain-containing carbohydrate-binding protein
COORDINATES: protein motif:HMM:NF014893.2
COORDINATES: protein motif:HMM:NF036499.2
COORDINATES: similar to AA sequence:RefSeq:WP_014022923.1
COORDINATES: similar to AA sequence:RefSeq:WP_018473396.1
COORDINATES: protein motif:HMM:NF019113.2
COORDINATES: protein motif:HMM:NF036578.2
COORDINATES: similar to AA sequence:RefSeq:WP_020527735.1
GO:0016857 - racemase and epimerase activity, acting on carbohydrates and derivatives [Evidence IEA]
GO:0019301 - rhamnose catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF021778.2
COORDINATES: similar to AA sequence:RefSeq:WP_018473377.1
COORDINATES: similar to AA sequence:RefSeq:WP_018473410.1
COORDINATES: similar to AA sequence:RefSeq:WP_020530286.1
COORDINATES: protein motif:HMM:NF024627.2
COORDINATES: protein motif:HMM:NF012792.2
COORDINATES: protein motif:HMM:TIGR02227.1
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]; GO:0006465 - signal peptide processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018475698.1
COORDINATES: protein motif:HMM:NF012584.2
COORDINATES: protein motif:HMM:NF016146.2
GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF040146.1
COORDINATES: protein motif:HMM:NF012801.2
COORDINATES: protein motif:HMM:NF040322.1
endonuclease/exonuclease/phosphatase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014796507.1
GO:0015250 - water channel activity [Evidence IEA]
GO:0006833 - water transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF024985.2
COORDINATES: protein motif:HMM:NF016232.2
COORDINATES: protein motif:HMM:NF012371.2
serine hydrolase domain-containing protein
COORDINATES: protein motif:HMM:NF018448.2
threonine/serine exporter family protein
COORDINATES: protein motif:HMM:NF017530.2
COORDINATES: protein motif:HMM:NF012700.2
COORDINATES: protein motif:HMM:NF020480.2
COORDINATES: protein motif:HMM:NF012958.2
COORDINATES: similar to AA sequence:RefSeq:WP_020527060.1
COORDINATES: similar to AA sequence:RefSeq:WP_020527059.1
COORDINATES: protein motif:HMM:NF024486.2
COORDINATES: protein motif:HMM:NF018009.2
HNH endonuclease signature motif containing protein
COORDINATES: protein motif:HMM:NF019013.2
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015266843.1
COORDINATES: protein motif:HMM:NF017206.2
COORDINATES: protein motif:HMM:NF012318.2
COORDINATES: protein motif:HMM:NF019241.2
COORDINATES: similar to AA sequence:RefSeq:WP_009281403.1
COORDINATES: similar to AA sequence:RefSeq:WP_019599881.1
COORDINATES: similar to AA sequence:RefSeq:WP_013931317.1
COORDINATES: protein motif:HMM:NF025420.2
2-dehydro-3-deoxyphosphooctonate aldolase
COORDINATES: protein motif:HMM:NF021561.2
COORDINATES: protein motif:HMM:NF013866.2
prolyl oligopeptidase family serine peptidase
COORDINATES: protein motif:HMM:NF015722.2
SUMF1/EgtB/PvdO family nonheme iron enzyme
COORDINATES: protein motif:HMM:NF014427.2
COORDINATES: protein motif:HMM:NF023549.2
COORDINATES: similar to AA sequence:RefSeq:WP_018475974.1
COORDINATES: protein motif:HMM:NF015531.2
COORDINATES: protein motif:HMM:NF016214.2
COORDINATES: similar to AA sequence:RefSeq:WP_020533190.1
COORDINATES: similar to AA sequence:RefSeq:WP_014771665.1
COORDINATES: protein motif:HMM:NF025677.2
transposase zinc-binding domain-containing protein
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF012307.2
COORDINATES: similar to AA sequence:RefSeq:WP_017732470.1
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_009282601.1
GO:0003908 - methylated-DNA-[protein]-cysteine S-methyltransferase activity [Evidence IEA]
methylated-DNA--[protein]-cysteine S-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_002700775.1
COORDINATES: protein motif:HMM:NF025918.2
COORDINATES: protein motif:HMM:TIGR01679.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013345.2
COORDINATES: similar to AA sequence:RefSeq:WP_015264806.1
COORDINATES: protein motif:HMM:NF012334.2
COORDINATES: protein motif:HMM:NF024895.2
COORDINATES: similar to AA sequence:RefSeq:WP_002696320.1
COORDINATES: protein motif:HMM:NF017280.2
COORDINATES: protein motif:HMM:TIGR02385.1
COORDINATES: protein motif:HMM:NF024905.2
COORDINATES: similar to AA sequence:RefSeq:WP_013407259.1
COORDINATES: similar to AA sequence:RefSeq:WP_013407824.1
COORDINATES: protein motif:HMM:NF007497.0
COORDINATES: protein motif:HMM:NF012804.2
class II aldolase/adducin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015815171.1
COORDINATES: similar to AA sequence:RefSeq:WP_010852499.1
COORDINATES: protein motif:HMM:NF014628.2
COORDINATES: similar to AA sequence:RefSeq:WP_008201579.1
GO:0005887 - integral component of plasma membrane [Evidence IEA]
GO:0015535 - fucose:proton symporter activity [Evidence IEA]
GO:0015756 - fucose transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004841633.1
GO:0008736 - L-fucose isomerase activity [Evidence IEA]; GO:0030145 - manganese ion binding [Evidence IEA]
GO:0019317 - fucose catabolic process [Evidence IEA]; GO:0005996 - monosaccharide metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02628.1
GO:0008737 - L-fuculokinase activity [Evidence IEA]
GO:0042355 - L-fucose catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012610.2
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017733214.1
COORDINATES: protein motif:HMM:NF021615.2
glycerophosphoryl diester phosphodiesterase membrane domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009195760.1
COORDINATES: protein motif:HMM:NF013998.2
COORDINATES: protein motif:HMM:NF021537.2
predicted Zn-dependent protease with a strongly conserved HExxH motif; Derived by automated computational analysis using gene prediction method: Protein Homology.
DUF2268 domain-containing putative Zn-dependent protease
COORDINATES: protein motif:HMM:NF033859.1
COORDINATES: protein motif:HMM:NF021594.2
COORDINATES: similar to AA sequence:RefSeq:WP_017730188.1
COORDINATES: protein motif:HMM:NF018649.2
isoprenylcysteine carboxylmethyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013632606.1
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_013455559.1
COORDINATES: similar to AA sequence:RefSeq:WP_020605432.1
COORDINATES: protein motif:HMM:NF024371.2
transglutaminase-like domain-containing protein
COORDINATES: protein motif:HMM:NF013702.2
lysophospholipid acyltransferase family protein
COORDINATES: protein motif:HMM:NF013884.2
COORDINATES: similar to AA sequence:RefSeq:WP_009580383.1
COORDINATES: similar to AA sequence:RefSeq:WP_018474703.1
COORDINATES: similar to AA sequence:RefSeq:WP_015810970.1
COORDINATES: protein motif:HMM:NF024957.2
COORDINATES: protein motif:HMM:NF013429.2
COORDINATES: protein motif:HMM:NF015534.2
COORDINATES: protein motif:HMM:NF040138.1
COORDINATES: protein motif:HMM:TIGR02069.1
GO:0044265 - cellular macromolecule catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007660097.1
COORDINATES: similar to AA sequence:RefSeq:WP_009582948.1
putative basic amino acid antiporter YfcC
COORDINATES: protein motif:HMM:NF039776.1
COORDINATES: similar to AA sequence:RefSeq:WP_015264421.1
GO:0004587 - ornithine-oxo-acid transaminase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF036710.2
COORDINATES: protein motif:HMM:NF025217.2
COORDINATES: protein motif:HMM:NF039257.1
COORDINATES: protein motif:HMM:NF021576.2
COORDINATES: protein motif:HMM:NF024704.2
COORDINATES: similar to AA sequence:RefSeq:WP_018473508.1
COORDINATES: protein motif:HMM:NF026758.2
COORDINATES: protein motif:HMM:NF017690.2
COORDINATES: protein motif:HMM:NF013283.2
COORDINATES: protein motif:HMM:NF026253.2
COORDINATES: protein motif:HMM:NF016356.2
COORDINATES: protein motif:HMM:NF033516.0
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013677.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03696.1
RHS repeat-associated core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018475690.1
COORDINATES: protein motif:HMM:NF012742.2
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_020529195.1
COORDINATES: protein motif:HMM:NF012472.2
COORDINATES: similar to AA sequence:RefSeq:WP_020528943.1
zinc-binding alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019598647.1
COORDINATES: similar to AA sequence:RefSeq:WP_018473523.1
COORDINATES: similar to AA sequence:RefSeq:WP_014773547.1
COORDINATES: similar to AA sequence:RefSeq:WP_020526815.1
tetratricopeptide repeat-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_014021939.1
COORDINATES: protein motif:HMM:TIGR01845.1
COORDINATES: protein motif:HMM:TIGR02436.1
COORDINATES: similar to AA sequence:RefSeq:WP_014021998.1
oxygen-insensitive NAD(P)H nitroreductase
COORDINATES: similar to AA sequence:RefSeq:WP_009186538.1
sodium-dependent bicarbonate transport family permease
COORDINATES: similar to AA sequence:RefSeq:WP_009186540.1
LysR substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF020123.2
COORDINATES: protein motif:HMM:NF022072.2
COORDINATES: protein motif:HMM:TIGR01783.1
COORDINATES: protein motif:HMM:NF013117.2
mechanosensitive ion channel family protein
COORDINATES: protein motif:HMM:NF020893.2
COORDINATES: protein motif:HMM:NF014026.2
thioredoxin fold domain-containing protein
COORDINATES: protein motif:HMM:NF033573.1
COORDINATES: similar to AA sequence:RefSeq:WP_014021925.1
GO:0016682 - oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor [Evidence IEA]
cytochrome d ubiquinol oxidase subunit II
COORDINATES: similar to AA sequence:RefSeq:WP_020532442.1
COORDINATES: similar to AA sequence:RefSeq:WP_013928344.1
COORDINATES: similar to AA sequence:RefSeq:WP_018473463.1
COORDINATES: protein motif:HMM:NF012673.2
COORDINATES: similar to AA sequence:RefSeq:WP_013452528.1
COORDINATES: similar to AA sequence:RefSeq:WP_009185297.1
COORDINATES: protein motif:HMM:NF015925.2
COORDINATES: protein motif:HMM:TIGR00383.1
GO:0015087 - cobalt ion transmembrane transporter activity [Evidence IEA]; GO:0015095 - magnesium ion transmembrane transporter activity [Evidence IEA]
GO:0006824 - cobalt ion transport [Evidence IEA]; GO:0015693 - magnesium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002693245.1
COORDINATES: protein motif:HMM:NF024092.2
COORDINATES: protein motif:HMM:NF013540.2
COORDINATES: protein motif:HMM:NF021431.2
type II toxin-antitoxin system HigB family toxin
COORDINATES: protein motif:HMM:NF003877.0
GO:0004427 - inorganic diphosphate phosphatase activity [Evidence IEA]
manganese-dependent inorganic pyrophosphatase
COORDINATES: similar to AA sequence:RefSeq:WP_008202739.1
COORDINATES: protein motif:HMM:NF015875.2
COORDINATES: protein motif:HMM:NF025679.2
COORDINATES: similar to AA sequence:RefSeq:WP_009579295.1
COORDINATES: protein motif:HMM:NF020302.2
COORDINATES: protein motif:HMM:NF039670.1
COORDINATES: protein motif:HMM:NF013056.2
COORDINATES: protein motif:HMM:NF013377.2
GO:0004555 - alpha,alpha-trehalase activity [Evidence IEA]
GO:0005991 - trehalose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009579977.1
COORDINATES: protein motif:HMM:NF016648.2
COORDINATES: protein motif:HMM:NF020904.2
COORDINATES: protein motif:HMM:NF020121.2
COORDINATES: protein motif:HMM:TIGR02937.1
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF033634.1
COORDINATES: similar to AA sequence:RefSeq:WP_020528150.1
COORDINATES: similar to AA sequence:RefSeq:WP_020528151.1
COORDINATES: similar to AA sequence:RefSeq:WP_014022182.1
COORDINATES: similar to AA sequence:RefSeq:WP_020528153.1
outer membrane lipoprotein-sorting protein
COORDINATES: protein motif:HMM:NF020496.2
COORDINATES: similar to AA sequence:RefSeq:WP_019596006.1
COORDINATES: similar to AA sequence:RefSeq:WP_019596007.1
COORDINATES: protein motif:HMM:NF012711.2
COORDINATES: protein motif:HMM:NF012894.2
COORDINATES: protein motif:HMM:NF019533.2
COORDINATES: protein motif:HMM:NF012339.2
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: protein motif:HMM:NF014025.2
COORDINATES: similar to AA sequence:RefSeq:WP_018473452.1
COORDINATES: nucleotide motif:Rfam:14.4:RF01725
SAM-I-IV-variant riboswitch; SAM riboswitches modulate the expression of downstream genes in response to levels of S-adenosylmethionine; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF012593.2
GO:0015293 - symporter activity [Evidence IEA]
cation:dicarboxylase symporter family transporter
COORDINATES: protein motif:HMM:NF024587.2
COORDINATES: similar to AA sequence:RefSeq:WP_019987373.1
COORDINATES: protein motif:HMM:NF022188.2
COORDINATES: similar to AA sequence:RefSeq:WP_019988019.1
COORDINATES: protein motif:HMM:NF012790.2
COORDINATES: protein motif:HMM:TIGR03519.1
type IX secretion system membrane protein PorP/SprF
COORDINATES: protein motif:HMM:NF037016.2
gliding motility-associated C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: protein motif:HMM:NF012745.2
COORDINATES: protein motif:HMM:NF025953.2
COORDINATES: protein motif:HMM:NF025072.2
COORDINATES: protein motif:HMM:NF024880.2
COORDINATES: protein motif:HMM:NF012744.2
COORDINATES: protein motif:HMM:NF016800.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014453.2
COORDINATES: protein motif:HMM:NF017755.2
GO:0008988 - rRNA (adenine-N6-)-methyltransferase activity [Evidence IEA]
GO:0006364 - rRNA processing [Evidence IEA]
23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF
COORDINATES: similar to AA sequence:RefSeq:WP_010855925.1
COORDINATES: protein motif:HMM:NF021221.2
COORDINATES: protein motif:HMM:NF016060.2
COORDINATES: protein motif:HMM:NF013592.2
COORDINATES: similar to AA sequence:RefSeq:WP_011584721.1
COORDINATES: similar to AA sequence:RefSeq:WP_008202235.1
COORDINATES: similar to AA sequence:RefSeq:WP_002698297.1
COORDINATES: protein motif:HMM:NF014022.2
COORDINATES: similar to AA sequence:RefSeq:WP_013407754.1
YeeE/YedE thiosulfate transporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017733980.1
COORDINATES: protein motif:HMM:NF017519.2
YiiX/YebB-like N1pC/P60 family cysteine hydrolase
COORDINATES: protein motif:HMM:NF002688.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0004357 - glutamate-cysteine ligase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0006750 - glutathione biosynthetic process [Evidence IEA]
bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB
COORDINATES: protein motif:HMM:TIGR00797.1
COORDINATES: similar to AA sequence:RefSeq:WP_014019310.1
COORDINATES: protein motif:HMM:NF014244.2
COORDINATES: protein motif:HMM:NF013109.2
GO:0015116 - sulfate transmembrane transporter activity [Evidence IEA]
GO:0008272 - sulfate transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF015648.2
COORDINATES: protein motif:HMM:NF022307.2
COORDINATES: similar to AA sequence:RefSeq:WP_015027651.1
COORDINATES: similar to AA sequence:RefSeq:WP_015266486.1
GO:0004096 - catalase activity [Evidence IEA]; GO:0004601 - peroxidase activity [Evidence IEA]
GO:0006979 - response to oxidative stress [Evidence IEA]
SusD/RagB family nutrient-binding outer membrane lipoprotein
COORDINATES: protein motif:HMM:NF014081.2
COORDINATES: similar to AA sequence:RefSeq:WP_009579332.1
COORDINATES: similar to AA sequence:RefSeq:WP_014018125.1
COORDINATES: protein motif:HMM:NF012475.2
COORDINATES: similar to AA sequence:RefSeq:WP_017732864.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_009579806.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014022960.1
COORDINATES: similar to AA sequence:RefSeq:WP_018477751.1
COORDINATES: protein motif:HMM:NF020296.2
COORDINATES: similar to AA sequence:RefSeq:WP_014019254.1
COORDINATES: protein motif:HMM:NF013682.2
COORDINATES: protein motif:HMM:NF014900.2
COORDINATES: protein motif:HMM:TIGR02494.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO:0043687 - post-translational protein modification [Evidence IEA]
glycyl-radical enzyme activating protein
COORDINATES: protein motif:HMM:NF040109.1
COORDINATES: protein motif:HMM:NF015971.2
COORDINATES: similar to AA sequence:RefSeq:WP_009195709.1
COORDINATES: similar to AA sequence:RefSeq:WP_012926295.1
COORDINATES: protein motif:HMM:NF024152.2
COORDINATES: similar to AA sequence:RefSeq:WP_010518912.1
COORDINATES: protein motif:HMM:NF020039.2
SMP-30/gluconolactonase/LRE family protein
COORDINATES: protein motif:HMM:NF024852.2
COORDINATES: similar to AA sequence:RefSeq:WP_009185200.1
COORDINATES: protein motif:HMM:NF019403.2
heparan-alpha-glucosaminide N-acetyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF024050.2
GO:0003993 - acid phosphatase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF033542.1
COORDINATES: protein motif:HMM:TIGR00879.1
GO:0051119 - sugar transmembrane transporter activity [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009197514.1
COORDINATES: protein motif:HMM:NF013736.2
COORDINATES: similar to AA sequence:RefSeq:WP_018474987.1
GO:0004350 - glutamate-5-semialdehyde dehydrogenase activity [Evidence IEA]; GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0006561 - proline biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01027.1
GO:0004349 - glutamate 5-kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009583186.1
COORDINATES: similar to AA sequence:RefSeq:WP_002702216.1
GO:0008783 - agmatinase activity [Evidence IEA]
GO:0008295 - spermidine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014803.2
COORDINATES: similar to AA sequence:RefSeq:WP_013454930.1
carbon-nitrogen hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011585819.1
COORDINATES: similar to AA sequence:RefSeq:WP_014020526.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0003994 - aconitate hydratase activity [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
COORDINATES: protein motif:HMM:NF012671.2
COORDINATES: protein motif:HMM:NF013438.2
COORDINATES: similar to AA sequence:RefSeq:WP_020596097.1
COORDINATES: protein motif:HMM:NF024742.2
COORDINATES: protein motif:HMM:NF012551.2
COORDINATES: similar to AA sequence:RefSeq:WP_018479478.1
COORDINATES: similar to AA sequence:RefSeq:WP_008623271.1
GO:0016903 - oxidoreductase activity, acting on the aldehyde or oxo group of donors [Evidence IEA]
2-oxoacid:acceptor oxidoreductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008623272.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008623273.1
RnfABCDGE type electron transport complex subunit D
COORDINATES: similar to AA sequence:RefSeq:WP_008623274.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0010181 - FMN binding [Evidence IEA]
RnfABCDGE type electron transport complex subunit G
COORDINATES: similar to AA sequence:RefSeq:WP_008623275.1
COORDINATES: similar to AA sequence:RefSeq:WP_008623277.1
GO:0009055 - electron transfer activity [Evidence IEA]
RnfABCDGE type electron transport complex subunit A
COORDINATES: similar to AA sequence:RefSeq:WP_017841868.1
COORDINATES: similar to AA sequence:RefSeq:WP_008623281.1
RnfABCDGE type electron transport complex subunit B
COORDINATES: protein motif:HMM:NF012234.2
COORDINATES: protein motif:HMM:NF025224.2
COORDINATES: protein motif:HMM:NF013630.2
COORDINATES: protein motif:HMM:NF018543.2
COORDINATES: protein motif:HMM:NF016829.2
COORDINATES: protein motif:HMM:NF039279.1
COORDINATES: protein motif:HMM:NF016595.2
COORDINATES: protein motif:HMM:NF012907.2
COORDINATES: protein motif:HMM:NF016736.2
COORDINATES: protein motif:HMM:NF039901.1
contractile injection system tape measure protein
COORDINATES: protein motif:HMM:TIGR02241.1
COORDINATES: similar to AA sequence:RefSeq:WP_009580332.1
phage tail sheath subtilisin-like domain-containing protein
COORDINATES: protein motif:HMM:NF025431.2
leucine-rich repeat domain-containing protein
COORDINATES: protein motif:HMM:NF024752.2
COORDINATES: protein motif:HMM:NF013695.2
COORDINATES: protein motif:HMM:NF014598.2
COORDINATES: protein motif:HMM:NF016995.2
COORDINATES: protein motif:HMM:NF016064.2
rhodanese-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020533600.1
COORDINATES: protein motif:HMM:NF013460.2
cytochrome b/b6 domain-containing protein
COORDINATES: protein motif:HMM:TIGR04315.1
GO:0022904 - respiratory electron transport chain [Evidence IEA]
tetrathionate reductase family octaheme c-type cytochrome
COORDINATES: protein motif:HMM:NF022577.2
COORDINATES: similar to AA sequence:RefSeq:WP_018344334.1
COORDINATES: protein motif:HMM:TIGR01764.1
COORDINATES: protein motif:HMM:NF024359.2
COORDINATES: protein motif:HMM:NF015935.2
COORDINATES: protein motif:HMM:NF025029.2
murein L,D-transpeptidase catalytic domain family protein
COORDINATES: protein motif:HMM:NF019106.2
COORDINATES: protein motif:HMM:NF016724.2
COORDINATES: protein motif:HMM:NF019556.2
COORDINATES: protein motif:HMM:NF013646.2
COORDINATES: similar to AA sequence:RefSeq:WP_018341498.1
methyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF012421.2
COORDINATES: protein motif:HMM:NF013226.2
COORDINATES: protein motif:HMM:NF040164.1
COORDINATES: protein motif:HMM:NF027464.2
COORDINATES: similar to AA sequence:RefSeq:WP_009577823.1
GO:0004386 - helicase activity [Evidence IEA]
GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF019321.2
COORDINATES: similar to AA sequence:RefSeq:WP_008202513.1
heme NO-binding domain-containing protein
COORDINATES: protein motif:HMM:NF037701.2
COORDINATES: protein motif:HMM:NF037522.2
COORDINATES: protein motif:HMM:NF024515.2
COORDINATES: protein motif:HMM:NF024871.2
COORDINATES: protein motif:HMM:TIGR00131.1
GO:0004335 - galactokinase activity [Evidence IEA]
GO:0006012 - galactose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009195126.1
GO:0008108 - UDP-glucose:hexose-1-phosphate uridylyltransferase activity [Evidence IEA]
UDP-glucose--hexose-1-phosphate uridylyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_018476498.1
GO:0003978 - UDP-glucose 4-epimerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013409208.1
COORDINATES: similar to AA sequence:RefSeq:WP_009581987.1
COORDINATES: protein motif:HMM:NF025607.2
COORDINATES: protein motif:HMM:NF020243.2
COORDINATES: similar to AA sequence:RefSeq:WP_020526457.1
COORDINATES: protein motif:HMM:NF024562.2
COORDINATES: similar to AA sequence:RefSeq:WP_018475692.1
COORDINATES: protein motif:HMM:NF016241.2
COORDINATES: similar to AA sequence:RefSeq:WP_020596995.1
COORDINATES: protein motif:HMM:NF016894.2
COORDINATES: similar to AA sequence:RefSeq:WP_018476004.1
COORDINATES: similar to AA sequence:RefSeq:WP_020533153.1
COORDINATES: similar to AA sequence:RefSeq:WP_018476006.1
COORDINATES: similar to AA sequence:RefSeq:WP_020533159.1
COORDINATES: similar to AA sequence:RefSeq:WP_020533151.1
COORDINATES: similar to AA sequence:RefSeq:WP_020533150.1
COORDINATES: protein motif:HMM:NF038123.1
COORDINATES: similar to AA sequence:RefSeq:WP_020533160.1
COORDINATES: similar to AA sequence:RefSeq:WP_013930611.1
COORDINATES: protein motif:HMM:NF024240.2
COORDINATES: protein motif:HMM:NF024869.2
COORDINATES: similar to AA sequence:RefSeq:WP_014773391.1
COORDINATES: protein motif:HMM:NF014758.2
COORDINATES: protein motif:HMM:NF012516.2
COORDINATES: protein motif:HMM:NF015983.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014600.2
COORDINATES: similar to AA sequence:RefSeq:WP_020533287.1
COORDINATES: protein motif:HMM:NF037611.2
COORDINATES: protein motif:HMM:NF024974.2
COORDINATES: protein motif:HMM:NF016955.2
TerB family tellurite resistance protein
COORDINATES: protein motif:HMM:NF016041.2
COORDINATES: protein motif:HMM:NF016364.2
COORDINATES: similar to AA sequence:RefSeq:WP_018474225.1
alpha-ketoglutarate-dependent dioxygenase AlkB
COORDINATES: similar to AA sequence:RefSeq:WP_019597951.1
sigma-54 dependent transcriptional regulator
COORDINATES: protein motif:HMM:NF025273.2
COORDINATES: similar to AA sequence:RefSeq:WP_010853181.1
COORDINATES: protein motif:HMM:NF013357.2
GO:0003796 - lysozyme activity [Evidence IEA]
GO:0016998 - cell wall macromolecule catabolic process [Evidence IEA]; GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF020367.2
COORDINATES: similar to AA sequence:RefSeq:WP_018473660.1
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013454771.1
COORDINATES: similar to AA sequence:RefSeq:WP_020528756.1
COORDINATES: similar to AA sequence:RefSeq:WP_020533099.1
COORDINATES: protein motif:HMM:NF025851.2
COORDINATES: similar to AA sequence:RefSeq:WP_015265292.1
COORDINATES: protein motif:HMM:NF023218.2
COORDINATES: similar to AA sequence:RefSeq:WP_008202267.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.4:RF02541
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: nucleotide motif:Rfam:14.4:RF00177
COORDINATES: protein motif:HMM:NF014218.2
COORDINATES: protein motif:HMM:NF008746.0
GO:0000175 - 3'-5'-exoribonuclease activity [Evidence IEA]; GO:0008852 - exodeoxyribonuclease I activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002295813.1
GO:0003999 - adenine phosphoribosyltransferase activity [Evidence IEA]
GO:0009116 - nucleoside metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013961.2
COORDINATES: similar to AA sequence:RefSeq:WP_020526805.1
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: protein motif:HMM:NF014404.2
COORDINATES: protein motif:HMM:NF024487.2
COORDINATES: protein motif:HMM:NF017393.2
COORDINATES: protein motif:HMM:NF015581.2
COORDINATES: protein motif:HMM:NF025053.2
protein phosphatase 2C domain-containing protein
COORDINATES: protein motif:HMM:NF019265.2
COORDINATES: protein motif:HMM:NF012298.2
COORDINATES: protein motif:HMM:NF023178.2
COORDINATES: protein motif:HMM:NF012403.2
COORDINATES: protein motif:HMM:NF024118.2
COORDINATES: protein motif:HMM:NF015012.2
L-dopachrome tautomerase-related protein