Cucurbita pepo mitochondrion, complete genome.
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita.
Insights into the evolution of mitochondrial genome size from complete sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae)
Submitted (23-APR-2010) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (31-AUG-2009) Department of Biology, Indiana University, 1001 E Third Street, Bloomington, IN 47405, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to GQ856148.\nCOMPLETENESS: full length.
predicted C to U RNA editing creates start codon
partial C to U RNA editing; UCA(S) to UYA(S/L)
similar to chloroplast LSC region from atpB to psbC-trnS spacer
putative trnM(CAT)-cp with anticodon:CAT; intact chloroplast-like trnM embedded within larger region of chloroplast DNA; possibly functional
putative trnF(GAA)-cp with anticodon GAA; intact chloroplast-like trnF embedded within larger region of chloroplast DNA; possibly functional
degenerate chloroplast-like trnL embedded within larger region of chloroplast DNA
putative trnS(GGA)-cp with anticodon GGA; intact chloroplast-like trnS embedded within larger region of chloroplast DNA; possibly functional
putative trnS(TGA)-cp with anticodon TGA; intact chloroplast-like trnS embedded within larger region of chloroplast DNA; possibly functional
partial C to U RNA editing; GCG(A) to GYG(A/V)
partial C to U RNA editing; CAU(H) to YAU(H/Y)
partial C to U RNA editing; CCC(P) to YCC(P/S)
partial C to U RNA editing; CCA(P) to CYA(P/L)
partial C to U RNA editing; CAC(H) to YAC(H/Y)
partial C to U RNA editing; CCU(P) to YCU(P/S)
partial C to U RNA editing; AUC(I) to AUY(I)
partial C to U RNA editing; CGU(R) to YGU(R/C)
similar to chloroplast LSC region from rpoC2 to rpoB
similar to chloroplast IR region from rrn4.5 to rps12-trnV spacer
degenerate chloroplast-like trnV embedded within larger region of chloroplast DNA
partial C to U RNA editing; CUA(L) to YUA(L)
similar to chloroplast LSC region from rpoA to psbB
similar to chloroplast LSC region from cemA to petA
similar to chloroplast LSC region from rps4-trnT spacer to rpoB
degenerate chloroplast-like trnS embedded within larger region of chloroplast DNA
putative trnfM(CAT)-cp with anticodon CAT; intact chloroplast-like trnfM embedded within larger region of chloroplast DNA; possibly functional
trnE(TTC)-cp with anticodon TTC; intact chloroplast-like trnE embedded within larger region of chloroplast DNA; possibly functional
degenerate chloroplast-like trnY embedded within larger region of chloroplast DNA
putative trnC(GCA)-cp with anticodon GCA; intact chloroplast-like trnC embedded within larger region of chloroplast DNA; possibly functional
partial C to U RNA editing; CCC(P) to UCY(S)
partial C to U RNA editing; CCC(P) to CUY(L)
similar to chloroplast LSC region from rps8-rps14 spacer to rpoA
partial C to U RNA editing; UCG(S) to UYG(S/L)
partial C to U RNA editing; ACC(T) to ACY(T)
partial C to U RNA editing; UCU(S) to UYU(S/F)
partial C to U RNA editing; CUU(L) to YUU(L/F)
partial C to U RNA editing; CCU(P) to CYU(P/L)
partial C to U RNA editing; UUC(F) to UUY(F)
partial C to U RNA editing; UCC(S) to UYY(S/F)
similar to chloroplast LSC region from trnT-psbD spacer to psbC-trnS spacer
partial C to U RNA editing; ACU(T) to AYU(T/I)
partial C to U RNA editing; CGG(R) to YGG(R/W)
partial C to U RNA editing; CCC(P) to CCY(P)
t-element for generation of 3' mRNA terminus of ccmC gene; see PubMed ID 17488843; similar to chloroplast-like trnI(TAT), with expanded anticodon loop
similar to chloroplast IR region from rpl2 to ycf2
putative trnI(CAT)-cp with anticodon CAT; intact chloroplast-like trnI embedded within larger region of chloroplast DNA; possibly functional
partial C to U RNA editing; CUC(L) to YUC(L/F)
partial C to U RNA editing; CUC(L) to CUY(L)
similar to chloroplast LSC region from ndhK to ndhC
degenerate portion of rpl2 exon 2 (see PubMed ID 11719578)
partial C to U RNA editing; UCC(S) to UCY(S)
start codon based on PubMed IDs 8193306 and 9327595
similar to chloroplast LSC region from psbB to petA-psbJ spacer
putative trnP(TGG)-cp with anticodon TGG; intact chloroplast-like trnP embedded within larger region of chloroplast DNA; possibly functional
similar to chloroplast LSC region from trnH-psbA spacer to atpA
putative trnQ(TTG)-cp with anticodon TTG; intact chloroplast-like trnQ embedded within larger region of chloroplast DNA; possibly functional
putative trnS(GCT)-cp with anticodon GCT; intact chloroplast-like trnS embedded within larger region of chloroplast DNA; possibly functional
similar to chloroplast LSC region trnT-psbD spacer to psbM-trnD spacer
similar to trnD(GTC)-cp with anticodon GTC; intact chloroplast-like trnD embedded within larger region of chloroplast DNA; possibly functional
similar to chloroplast LSC region from atpB to trnT-trnL spacer
degenerate chloroplast-like trnF embedded within larger region of chloroplast DNA
similar to chloroplast LSC region from trnT-psbD spacer to rpoB-trnC spacer
degenerate chloroplast-like trnE embedded within larger region of chloroplast DNA
putative trnY(GTA)-cp with anticodon GTA; degenerate chloroplast-like trnY embedded within larger region of chloroplast DNA
putative trnD(GTC)-cp with anticodon GTC; intact chloroplast-like trnD embedded within larger region of chloroplast DNA; possibly functional
similar to chloroplast SSC region from ndhF to ndhG
similar to chloroplast SSC region from ycf1 to ndhA
similar to chloroplast IR region from rps12-trnV spacer to ycf2
putative trnL(CAA)-cp with anticodon CAA; intact chloroplast-like trnL embedded within larger region of chloroplast DNA; possibly functional
partial C to U RNA editing; UAC(Y) to UAY(Y)
partial C to U RNA editing; CUG(L) to YUG(L)
similar to chloroplast IR region from rps7 to rps12-trnV spacer
C assumed to be post-transcriptionally modified to lysidine, which pairs with A, not G (see PubMed ID 1698276)
partial C to U RNA editing; UCC(S) to UYC(S/F)
partial C to U RNA editing; CCG(P) to CYG(P/L)
partial C to U RNA editing; CCG(P) to YCG(P/S)
partial C to U RNA editing; CCC(P) to UYC(S/F)
predicted C to U RNA editing creates stop codon
partial C to U RNA editing; CGC(R) to YGC(R/C)
partial C to U RNA editing; CCC(P) to CYC(P/L)
similar to chloroplast LSC region from trnP-psaJ spacer to petG-trnW spacer
degenerate chloroplast-like trnP embedded within larger region of chloroplast DNA
putative trnW(CCA)-cp with anticodon CCA; intact chloroplast-like trnW embedded within larger region of chloroplast DNA, possibly functional