Cucurbita pepo mitochondrion, complete genome.
type: Entry
definition: Cucurbita pepo mitochondrion, complete genome.
sequence version: NC_014050.1
sequence date: 2023-04-03
sequence: sequence
division: PLN
label: NC_014050.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Cucurbita pepo
organism: Cucurbita pepo
taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita.
reference: 1
references: 20118192
reference: 2
reference: 3
comment: PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to GQ856148.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 982833
topology: circular
so has quality: SO_0000988
location: 1..982833
location: region:1-982833:1
RO_0002162: 3663

NC_014050
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: Insights into the evolution of mitochondrial genome size from complete sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae)
author: Alverson, A.J.
author: Wei, X.
author: Rice, D.W.
author: Stern, D.B.
author: Barry, K.
author: Palmer, J.D.
journal: Mol. Biol. Evol.
volume: 27
issue: 6
pages: 1436-1448
year: 2010
pubmed: 20118192

20118192
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (23-APR-2010) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Alverson, A.J.
author: Wei, X.
author: Rice, D.W.
author: Stern, D.B.
author: Palmer, J.D.
journal: Submitted (31-AUG-2009) Department of Biology, Indiana University, 1001 E Third Street, Bloomington, IN 47405, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:982833:1
position: 982833
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-982833:1:source
so part of: sequence
organism: Cucurbita pepo
organelle: mitochondrion
mol type: genomic DNA
cultivar: Dark green zucchini

3663
type: Taxonomy
SIO_000068: taxonomy

CupepM_p18
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: nad2
locus tag: CupepM_p18
trans splicing: true
so part of: sequence
location: complement(join(952029..956639,616874..618624))
location: region:616874-956639:-1
so has part: feature:616874-618624:-1:exon
so has part: feature:952029-956639:-1:exon
subclass of: SO_0000010

9072871
type: Gene
SIO_000068: ncbigene

position:616874:-1
position: 616874
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:956639:-1
position: 956639
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:616874-618624:-1:exon

position:618624:-1
position: 618624
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:952029-956639:-1:exon

position:952029:-1
position: 952029
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CupepM_p18
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3663
gene: nad2
locus tag: CupepM_p18
exception: RNA editing
trans splicing: true
codon start: 1
product: NADH dehydrogenase subunit 2
translation: MFNLFLAVFPEIFIINATFILLIHGVVFSTSKKYDYPPLVSNVGWLGLLSVLITLLLLAAGAPLLTIAHLFWNNLFRRDNLTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLISMYLAIELQSLCFYVMAASKRKSEFSTEAGLKYLILGAFSSGILLFGCSMIYGSTGATHFDQLAKILTGYEITGARSSGIFMGILFIAVGFLFKITAVPFHMWAPDIYEGSPTPVTAFLSIAPKISIFANILRLFIYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAYSSIGHVGYICIGFSCGTIEGIQSLLIGIFIYVFMTIDAFAIVLALRQTRVKYLADLGALAKTNPILAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCFYYIRLVKIMFFDTPRTWILYEPMDRDKSLLLAMISSFITLFFLYPSPLFSVTHQMALSSYL
SIO_010081: CupepM_p18
subclass of: SO_0000673
so part of: CupepM_p18
location: complement(join(952029..952217,953636..954207,956479..956639,616874..617265,618472..618624))
location: region:616874-956639:-1
so has part: feature:618472-618624:-1:exon
so has part: feature:616874-617265:-1:exon
so has part: feature:956479-956639:-1:exon
so has part: feature:953636-954207:-1:exon
so has part: feature:952029-952217:-1:exon

YP_003587345.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:618472-618624:-1:exon

position:618472:-1
position: 618472
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:616874-617265:-1:exon

position:617265:-1
position: 617265
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:956479-956639:-1:exon

position:956479:-1
position: 956479
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:953636-954207:-1:exon

position:953636:-1
position: 953636
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:954207:-1
position: 954207
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:952029-952217:-1:exon

position:952217:-1
position: 952217
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CupepM_p01
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: cox1
locus tag: CupepM_p01
so part of: sequence
location: 1..1584
location: region:1-1584:1
so has part: feature:1-1584:1:exon
subclass of: SO_0000010

9072832
type: Gene
SIO_000068: ncbigene

position:1584:1
position: 1584
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-1584:1:exon

CupepM_p01
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3663
gene: cox1
locus tag: CupepM_p01
exception: RNA editing
note: predicted C to U RNA editing creates start codon
codon start: 1
product: cytochrome c oxidase subunit 1
translation: MRNLVRWLFSTNHKDIGTLYFIFGAIAGVMGTCFSVLIRMELARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPAMIGGFGNWFVPILIGAPDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLSGITSHSGGAVDLAIFSLHLSGISSILGSINFITTIFNMRGPGMTMHRLPLFVWSVLVTAFLLLLSLPVLAGAITMLLTDRNFNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHIVSTFSGKPVFGYLGMVYAMISIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKIFSWIATMWGGSIQYKTPMLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTYYVVAHFHYVLSMGAVFALFAGFYYWVGKIFGRTYPETLGQIHFWITFFGVNLTFFPMHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGICCFFVVVTITLSSGNNKRCAPSPWAVEQNSTTLEWMVQSPPAFHTFGELPAIKETKSYVK
SIO_010081: CupepM_p01
subclass of: SO_0000673
so part of: CupepM_p01
location: 1..1584
location: region:1-1584:1
so has part: feature:1-1584:1:exon

YP_003587346.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-1584:1:exon

CupepM_p01
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cox1
locus tag: CupepM_p01
note: C to U RNA editing; UCU(S) to UUU(F)
SIO_010081: CupepM_p01
subclass of: SO_0000673
so part of: CupepM_p01
location: 242
location: region:242-242:1
so has part: feature:242-242:1:exon

position:242:1
position: 242
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:242-242:1:exon

CupepM_p01
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cox1
locus tag: CupepM_p01
note: C to U RNA editing; UCU(S) to UUU(F)
SIO_010081: CupepM_p01
subclass of: SO_0000673
so part of: CupepM_p01
location: 254
location: region:254-254:1
so has part: feature:254-254:1:exon

position:254:1
position: 254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:254-254:1:exon

CupepM_p01
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cox1
locus tag: CupepM_p01
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p01
subclass of: SO_0000673
so part of: CupepM_p01
location: 443
location: region:443-443:1
so has part: feature:443-443:1:exon

position:443:1
position: 443
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:443-443:1:exon

CupepM_p01
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cox1
locus tag: CupepM_p01
note: C to U RNA editing; UCU(S) to UUU(F)
SIO_010081: CupepM_p01
subclass of: SO_0000673
so part of: CupepM_p01
location: 452
location: region:452-452:1
so has part: feature:452-452:1:exon

position:452:1
position: 452
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:452-452:1:exon

CupepM_p01
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cox1
locus tag: CupepM_p01
note: C to U RNA editing; UCC(S) to UUC(F)
SIO_010081: CupepM_p01
subclass of: SO_0000673
so part of: CupepM_p01
location: 515
location: region:515-515:1
so has part: feature:515-515:1:exon

position:515:1
position: 515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:515-515:1:exon

CupepM_p01
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cox1
locus tag: CupepM_p01
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p01
subclass of: SO_0000673
so part of: CupepM_p01
location: 551
location: region:551-551:1
so has part: feature:551-551:1:exon

position:551:1
position: 551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:551-551:1:exon

CupepM_p01
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cox1
locus tag: CupepM_p01
note: C to U RNA editing; CCA(P) to CUA(L)
SIO_010081: CupepM_p01
subclass of: SO_0000673
so part of: CupepM_p01
location: 590
location: region:590-590:1
so has part: feature:590-590:1:exon

position:590:1
position: 590
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:590-590:1:exon

CupepM_p01
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cox1
locus tag: CupepM_p01
note: C to U RNA editing; UCU(S) to UUU(F)
SIO_010081: CupepM_p01
subclass of: SO_0000673
so part of: CupepM_p01
location: 668
location: region:668-668:1
so has part: feature:668-668:1:exon

position:668:1
position: 668
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:668-668:1:exon

CupepM_p01
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cox1
locus tag: CupepM_p01
note: C to U RNA editing; CGG(R) to UGG(W)
SIO_010081: CupepM_p01
subclass of: SO_0000673
so part of: CupepM_p01
location: 715
location: region:715-715:1
so has part: feature:715-715:1:exon

position:715:1
position: 715
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:715-715:1:exon

CupepM_p01
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cox1
locus tag: CupepM_p01
note: C to U RNA editing; CCC(P) to CUC(L)
SIO_010081: CupepM_p01
subclass of: SO_0000673
so part of: CupepM_p01
location: 746
location: region:746-746:1
so has part: feature:746-746:1:exon

position:746:1
position: 746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:746-746:1:exon

CupepM_p01
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cox1
locus tag: CupepM_p01
note: C to U RNA editing; UCC(S) to UUC(F)
SIO_010081: CupepM_p01
subclass of: SO_0000673
so part of: CupepM_p01
location: 761
location: region:761-761:1
so has part: feature:761-761:1:exon

position:761:1
position: 761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:761-761:1:exon

CupepM_p01
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cox1
locus tag: CupepM_p01
note: C to U RNA editing; CCG(P) to CUG(L)
SIO_010081: CupepM_p01
subclass of: SO_0000673
so part of: CupepM_p01
location: 1079
location: region:1079-1079:1
so has part: feature:1079-1079:1:exon

position:1079:1
position: 1079
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1079-1079:1:exon

CupepM_p01
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cox1
locus tag: CupepM_p01
note: C to U RNA editing; CAC(H) to UAC(Y)
SIO_010081: CupepM_p01
subclass of: SO_0000673
so part of: CupepM_p01
location: 1186
location: region:1186-1186:1
so has part: feature:1186-1186:1:exon

position:1186:1
position: 1186
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1186-1186:1:exon

CupepM_p01
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cox1
locus tag: CupepM_p01
note: C to U RNA editing; CCG(P) to CUG(L)
SIO_010081: CupepM_p01
subclass of: SO_0000673
so part of: CupepM_p01
location: 1274
location: region:1274-1274:1
so has part: feature:1274-1274:1:exon

position:1274:1
position: 1274
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1274-1274:1:exon

CupepM_p01
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cox1
locus tag: CupepM_p01
note: C to U RNA editing; CUC(L) to UUC(F)
SIO_010081: CupepM_p01
subclass of: SO_0000673
so part of: CupepM_p01
location: 1279
location: region:1279-1279:1
so has part: feature:1279-1279:1:exon

position:1279:1
position: 1279
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1279-1279:1:exon

CupepM_p01
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cox1
locus tag: CupepM_p01
note: C to U RNA editing; CGU(R) to UGU(C)
SIO_010081: CupepM_p01
subclass of: SO_0000673
so part of: CupepM_p01
location: 1402
location: region:1402-1402:1
so has part: feature:1402-1402:1:exon

position:1402:1
position: 1402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1402-1402:1:exon

CupepM_p01
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cox1
locus tag: CupepM_p01
note: C to U RNA editing; CGU(R) to UGU(C)
SIO_010081: CupepM_p01
subclass of: SO_0000673
so part of: CupepM_p01
location: 1405
location: region:1405-1405:1
so has part: feature:1405-1405:1:exon

position:1405:1
position: 1405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1405-1405:1:exon

CupepM_p01
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cox1
locus tag: CupepM_p01
note: partial C to U RNA editing; UCA(S) to UYA(S/L)
SIO_010081: CupepM_p01
subclass of: SO_0000673
so part of: CupepM_p01
location: 1433
location: region:1433-1433:1
so has part: feature:1433-1433:1:exon

position:1433:1
position: 1433
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1433-1433:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: similar to chloroplast LSC region from atpB to psbC-trnS spacer
so part of: sequence
location: 6225..22793
location: region:6225-22793:1
so has part: feature:6225-22793:1:region

position:6225:1
position: 6225
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22793:1
position: 22793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6225-22793:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: putative trnM(CAT)-cp with anticodon:CAT; intact chloroplast-like trnM embedded within larger region of chloroplast DNA; possibly functional
so part of: sequence
location: complement(8036..8108)
location: region:8036-8108:-1
so has part: feature:8036-8108:-1:region

position:8036:-1
position: 8036
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8108:-1
position: 8108
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8036-8108:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: putative trnF(GAA)-cp with anticodon GAA; intact chloroplast-like trnF embedded within larger region of chloroplast DNA; possibly functional
so part of: sequence
location: complement(11874..11946)
location: region:11874-11946:-1
so has part: feature:11874-11946:-1:region

position:11874:-1
position: 11874
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11946:-1
position: 11946
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11874-11946:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: degenerate chloroplast-like trnL embedded within larger region of chloroplast DNA
pseudo: true
so part of: sequence
location: complement(12063..12130)
location: region:12063-12130:-1
so has part: feature:12063-12130:-1:region

position:12063:-1
position: 12063
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12130:-1
position: 12130
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12063-12130:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: putative trnS(GGA)-cp with anticodon GGA; intact chloroplast-like trnS embedded within larger region of chloroplast DNA; possibly functional
so part of: sequence
location: complement(14267..14357)
location: region:14267-14357:-1
so has part: feature:14267-14357:-1:region

position:14267:-1
position: 14267
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14357:-1
position: 14357
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14267-14357:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: putative trnS(TGA)-cp with anticodon TGA; intact chloroplast-like trnS embedded within larger region of chloroplast DNA; possibly functional
so part of: sequence
location: 22546..22640
location: region:22546-22640:1
so has part: feature:22546-22640:1:region

position:22546:1
position: 22546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22640:1
position: 22640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22546-22640:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: nad6 fragment
so part of: sequence
location: complement(28583..28627)
location: region:28583-28627:-1
so has part: feature:28583-28627:-1:region

position:28583:-1
position: 28583
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28627:-1
position: 28627
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28583-28627:-1:region

CupepM_t01
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: trnfM(CAT)
locus tag: CupepM_t01
note: anticodon:CAT
so part of: sequence
location: complement(29561..29634)
location: region:29561-29634:-1
so has part: feature:29561-29634:-1:exon
subclass of: SO_0000663

9072826
type: Gene
SIO_000068: ncbigene

position:29561:-1
position: 29561
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29634:-1
position: 29634
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29561-29634:-1:exon

CupepM_t01
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3663
gene: trnfM(CAT)
locus tag: CupepM_t01
product: tRNA-Met
SIO_010081: CupepM_t01
subclass of: SO_0000673
so part of: CupepM_t01
location: complement(29561..29634)
location: region:29561-29634:-1
so has part: feature:29561-29634:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:29561-29634:-1:exon

CupepM_r01
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: rrn26
locus tag: CupepM_r01
so part of: sequence
location: complement(30050..33186)
location: region:30050-33186:-1
so has part: feature:30050-33186:-1:exon
subclass of: SO_0000573

9072862
type: Gene
SIO_000068: ncbigene

position:30050:-1
position: 30050
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:33186:-1
position: 33186
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30050-33186:-1:exon

CupepM_r01
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 3663
gene: rrn26
locus tag: CupepM_r01
product: 26S ribosomal RNA
SIO_010081: CupepM_r01
subclass of: SO_0000673
so part of: CupepM_r01
location: complement(30050..33186)
location: region:30050-33186:-1
so has part: feature:30050-33186:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:30050-33186:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: sdh4 fragment
so part of: sequence
location: 43229..43316
location: region:43229-43316:1
so has part: feature:43229-43316:1:region

position:43229:1
position: 43229
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43316:1
position: 43316
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43229-43316:1:region

CupepM_p02
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: nad5
locus tag: CupepM_p02
trans splicing: true
so part of: sequence
location: join(complement(391836..394101),81749..81770,356747..358363)
location: region:81749-394101:1
so has part: feature:391836-394101:-1:exon
so has part: feature:81749-81770:1:exon
so has part: feature:356747-358363:1:exon
subclass of: SO_0000010

9072855
type: Gene
SIO_000068: ncbigene

position:81749:1
position: 81749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:394101:-1
position: 394101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition
type: ReverseStrandPosition

urn:…
SIO_000300: 1
SIO_000628: feature:391836-394101:-1:exon

position:391836:-1
position: 391836
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:81749-81770:1:exon

position:81770:1
position: 81770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:356747-358363:1:exon

position:356747:1
position: 356747
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:358363:1
position: 358363
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CupepM_p02
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3663
gene: nad5
locus tag: CupepM_p02
exception: RNA editing
trans splicing: true
codon start: 1
product: NADH dehydrogenase subunit 5
translation: MYLLIVFLPLLGSSVAGFFGRFLGSEGTAIITTTCVSFSSILSFLAFYEVALGASACYLRIAPWISSEMFDASWGFLFDSLTVVMLIVVTFISSLVHLYSISYMSEDPHSPRFMCYLSIFTFFMLMLVTGDNFLQLFLGWEGVGLASYLLIHFWFTRLQADKAAIKAMLVNRVGDFGLALGILGCFTLFQTVDFSTIFACASVPRNSWIFCNMRLNAITLICILLFIGAVGKSAQIGLHTWLPDAMEGPTPVSALIHAATMVTAGVFMIARCSPLFEYSPTALIVITFAGAMTSFLAATTGILQNDLKRVIAYSTCSQLGYMIFACGISNYSVSVFHLMNHAFFKALLFLSAGSVIHAMSDEQDMRKMGGLASSFPLTYAMMLMGSLSLIGFPFLTGFYSKDVILELAYTKYTISGNFAFWLGSVSVLFTSYYSFRLLFLTFLVPTNSFGRDIVRCHDAPIPMAIPLILLALGSLFVGYLAKDMMIGLGTNFWANSLFVLPKNEILAESEFAAPTIIKLIPILFSTLGAFVAYNVNLVADQFQRAFQTSTFCNRLYSFFNKRWFFDQVLNDFLVRSFLRFGYSVSFEALDKGAIEILGPYGISYTFRRLAERISQLQSGFVYHYAFAILLGLTLFVTFSRMWDSLSSWVDNRSSFILIVSRFYI
SIO_010081: CupepM_p02
subclass of: SO_0000673
so part of: CupepM_p02
location: join(complement(393872..394101),complement(391836..393051),81749..81770,356747..357141,358232..358363)
location: region:81749-394101:1
so has part: feature:393872-394101:-1:exon
so has part: feature:391836-393051:-1:exon
so has part: feature:81749-81770:1:exon
so has part: feature:356747-357141:1:exon
so has part: feature:358232-358363:1:exon

YP_003587344.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:393872-394101:-1:exon

position:393872:-1
position: 393872
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:391836-393051:-1:exon

position:393051:-1
position: 393051
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:81749-81770:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:356747-357141:1:exon

position:357141:1
position: 357141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:358232-358363:1:exon

position:358232:1
position: 358232
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CupepM_p02
type: Exon
subclass of: SO_0000147
RO_0002162: 3663
gene: nad5
locus tag: CupepM_p02
number: 3
SIO_010081: CupepM_p02
subclass of: SO_0000673
so part of: CupepM_p02
location: 81749..81770
location: region:81749-81770:1
so has part: feature:81749-81770:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:81749-81770:1:exon

CupepM_p03
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: rpl5
locus tag: CupepM_p03
so part of: sequence
location: 83088..83645
location: region:83088-83645:1
so has part: feature:83088-83645:1:exon
subclass of: SO_0000010

9072836
type: Gene
SIO_000068: ncbigene

position:83088:1
position: 83088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:83645:1
position: 83645
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:83088-83645:1:exon

CupepM_p03
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3663
gene: rpl5
locus tag: CupepM_p03
exception: RNA editing
codon start: 1
product: ribosomal protein L5
translation: MFSLDFHYEDVLRQDLLLKLNHANVMEVPGLCEIRVVPKAPYDFIIKNGKLAMEISCGQKLIQTQRGSTGKSFRSNPFLESNKDKGYVSDLARQSTLRGHGMSNFVVRISTVMSLLDSPVEIRENSMQFSMETEFCSFSPELEDHFEIFEHIIGFNVTIVTSANTQDETLLLWSGFLQKDEGETQ
SIO_010081: CupepM_p03
subclass of: SO_0000673
so part of: CupepM_p03
location: 83088..83645
location: region:83088-83645:1
so has part: feature:83088-83645:1:exon

YP_003587347.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:83088-83645:1:exon

CupepM_p03
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rpl5
locus tag: CupepM_p03
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p03
subclass of: SO_0000673
so part of: CupepM_p03
location: 83122
location: region:83122-83122:1
so has part: feature:83122-83122:1:exon

position:83122:1
position: 83122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:83122-83122:1:exon

CupepM_p03
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rpl5
locus tag: CupepM_p03
note: C to U RNA editing; CCG(P) to CUG(L)
SIO_010081: CupepM_p03
subclass of: SO_0000673
so part of: CupepM_p03
location: 83134
location: region:83134-83134:1
so has part: feature:83134-83134:1:exon

position:83134:1
position: 83134
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:83134-83134:1:exon

CupepM_p03
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rpl5
locus tag: CupepM_p03
note: C to U RNA editing; UCG(S) to UUG(L)
SIO_010081: CupepM_p03
subclass of: SO_0000673
so part of: CupepM_p03
location: 83179
location: region:83179-83179:1
so has part: feature:83179-83179:1:exon

position:83179:1
position: 83179
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:83179-83179:1:exon

CupepM_p03
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rpl5
locus tag: CupepM_p03
note: C to U RNA editing; CCG(P) to UCG(S)
SIO_010081: CupepM_p03
subclass of: SO_0000673
so part of: CupepM_p03
location: 83253
location: region:83253-83253:1
so has part: feature:83253-83253:1:exon

position:83253:1
position: 83253
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:83253-83253:1:exon

CupepM_p03
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rpl5
locus tag: CupepM_p03
note: C to U RNA editing; CGC(R) to UGC(C)
SIO_010081: CupepM_p03
subclass of: SO_0000673
so part of: CupepM_p03
location: 83256
location: region:83256-83256:1
so has part: feature:83256-83256:1:exon

position:83256:1
position: 83256
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:83256-83256:1:exon

CupepM_p03
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rpl5
locus tag: CupepM_p03
note: partial C to U RNA editing; GCG(A) to GYG(A/V)
SIO_010081: CupepM_p03
subclass of: SO_0000673
so part of: CupepM_p03
location: 83404
location: region:83404-83404:1
so has part: feature:83404-83404:1:exon

position:83404:1
position: 83404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:83404-83404:1:exon

CupepM_p03
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rpl5
locus tag: CupepM_p03
note: C to U RNA editing; CCA(P) to CUA(L)
SIO_010081: CupepM_p03
subclass of: SO_0000673
so part of: CupepM_p03
location: 83599
location: region:83599-83599:1
so has part: feature:83599-83599:1:exon

position:83599:1
position: 83599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:83599-83599:1:exon

CupepM_p03
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rpl5
locus tag: CupepM_p03
note: C to U RNA editing; CCG(P) to CUG(L)
SIO_010081: CupepM_p03
subclass of: SO_0000673
so part of: CupepM_p03
location: 83602
location: region:83602-83602:1
so has part: feature:83602-83602:1:exon

position:83602:1
position: 83602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:83602-83602:1:exon

CupepM_p04
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: rps14
locus tag: CupepM_p04
pseudo: true
so part of: sequence
location: 83648..83955
location: region:83648-83955:1
so has part: feature:83648-83955:1:exon

9072842
type: Gene
SIO_000068: ncbigene

position:83648:1
position: 83648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:83955:1
position: 83955
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:83648-83955:1:exon

CupepM_p05
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: cob
locus tag: CupepM_p05
so part of: sequence
location: 84568..85740
location: region:84568-85740:1
so has part: feature:84568-85740:1:exon
subclass of: SO_0000010

9072870
type: Gene
SIO_000068: ncbigene

position:84568:1
position: 84568
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:85740:1
position: 85740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:84568-85740:1:exon

CupepM_p05
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3663
gene: cob
locus tag: CupepM_p05
exception: RNA editing
codon start: 1
product: apocytochrome b
translation: MTKRNQRFSLLKQPISSTLNQHLIDYPTPSNLSYWWGFGSLAGLCLVIQIVTGVFLAMHYTPHVDLAFNSVEHVMRDVEGGWLLRYMHANGASMFFIVVYLHIFRGLYYASYSSPREFVWCLGVVIFLLMIVTAFIGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHYLLPFLLAGASLLHLAALHQYGSNNPLGVHSEMDKISFYPYFYVKDLVGWVAFAIFFSIWIFYAPNVLGHPDNYIPANPMSTPPHIVPEWYFLPIYAILRSIPDKAGGVAAIALVFICLLALPFFKSMYVRSSSFRPIYQGLFWLLLADCLLLGWIGCQPVEAPFVTIGQISSFVFFLFFAITPILGRVGRGIPNSYTDEP
SIO_010081: CupepM_p05
subclass of: SO_0000673
so part of: CupepM_p05
location: 84568..85740
location: region:84568-85740:1
so has part: feature:84568-85740:1:exon

YP_003587348.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:84568-85740:1:exon

CupepM_p05
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cob
locus tag: CupepM_p05
note: C to U RNA editing; CCG(P) to UCG(S)
SIO_010081: CupepM_p05
subclass of: SO_0000673
so part of: CupepM_p05
location: 84685
location: region:84685-84685:1
so has part: feature:84685-84685:1:exon

position:84685:1
position: 84685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:84685-84685:1:exon

CupepM_p05
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cob
locus tag: CupepM_p05
note: C to U RNA editing; CUC(L) to UUC(F)
SIO_010081: CupepM_p05
subclass of: SO_0000673
so part of: CupepM_p05
location: 84853
location: region:84853-84853:1
so has part: feature:84853-84853:1:exon

position:84853:1
position: 84853
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:84853-84853:1:exon

CupepM_p05
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cob
locus tag: CupepM_p05
note: C to U RNA editing; CAC(H) to UAC(Y)
SIO_010081: CupepM_p05
subclass of: SO_0000673
so part of: CupepM_p05
location: 84865
location: region:84865-84865:1
so has part: feature:84865-84865:1:exon

position:84865:1
position: 84865
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:84865-84865:1:exon

CupepM_p05
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cob
locus tag: CupepM_p05
note: partial C to U RNA editing; CAU(H) to YAU(H/Y)
SIO_010081: CupepM_p05
subclass of: SO_0000673
so part of: CupepM_p05
location: 84892
location: region:84892-84892:1
so has part: feature:84892-84892:1:exon

position:84892:1
position: 84892
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:84892-84892:1:exon

CupepM_p05
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cob
locus tag: CupepM_p05
note: C to U RNA editing; CGG(R) to UGG(W)
SIO_010081: CupepM_p05
subclass of: SO_0000673
so part of: CupepM_p05
location: 84925
location: region:84925-84925:1
so has part: feature:84925-84925:1:exon

position:84925:1
position: 84925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:84925-84925:1:exon

CupepM_p05
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cob
locus tag: CupepM_p05
note: C to U RNA editing; ACA(T) to AUA(I)
SIO_010081: CupepM_p05
subclass of: SO_0000673
so part of: CupepM_p05
location: 84974
location: region:84974-84974:1
so has part: feature:84974-84974:1:exon

position:84974:1
position: 84974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:84974-84974:1:exon

CupepM_p05
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cob
locus tag: CupepM_p05
note: C to U RNA editing; CAU(H) to UAU(Y)
SIO_010081: CupepM_p05
subclass of: SO_0000673
so part of: CupepM_p05
location: 85135
location: region:85135-85135:1
so has part: feature:85135-85135:1:exon

position:85135:1
position: 85135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:85135-85135:1:exon

CupepM_p05
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cob
locus tag: CupepM_p05
note: partial C to U RNA editing; CCC(P) to YCC(P/S)
SIO_010081: CupepM_p05
subclass of: SO_0000673
so part of: CupepM_p05
location: 85375
location: region:85375-85375:1
so has part: feature:85375-85375:1:exon

position:85375:1
position: 85375
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:85375-85375:1:exon

CupepM_p05
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cob
locus tag: CupepM_p05
note: C to U RNA editing; CAU(H) to UAU(Y)
SIO_010081: CupepM_p05
subclass of: SO_0000673
so part of: CupepM_p05
location: 85420
location: region:85420-85420:1
so has part: feature:85420-85420:1:exon

position:85420:1
position: 85420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:85420-85420:1:exon

CupepM_p05
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cob
locus tag: CupepM_p05
note: partial C to U RNA editing; CCA(P) to CYA(P/L)
SIO_010081: CupepM_p05
subclass of: SO_0000673
so part of: CupepM_p05
location: 85475
location: region:85475-85475:1
so has part: feature:85475-85475:1:exon

position:85475:1
position: 85475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:85475-85475:1:exon

CupepM_p05
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cob
locus tag: CupepM_p05
note: partial C to U RNA editing; CAC(H) to YAC(H/Y)
SIO_010081: CupepM_p05
subclass of: SO_0000673
so part of: CupepM_p05
location: 85549
location: region:85549-85549:1
so has part: feature:85549-85549:1:exon

position:85549:1
position: 85549
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:85549-85549:1:exon

CupepM_p05
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cob
locus tag: CupepM_p05
note: partial C to U RNA editing; CCU(P) to YCU(P/S)
SIO_010081: CupepM_p05
subclass of: SO_0000673
so part of: CupepM_p05
location: 85651
location: region:85651-85651:1
so has part: feature:85651-85651:1:exon

position:85651:1
position: 85651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:85651-85651:1:exon

CupepM_p05
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cob
locus tag: CupepM_p05
note: C to U RNA editing; CCG(P) to CUG(L)
SIO_010081: CupepM_p05
subclass of: SO_0000673
so part of: CupepM_p05
location: 85691
location: region:85691-85691:1
so has part: feature:85691-85691:1:exon

position:85691:1
position: 85691
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:85691-85691:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: nad1 exon5 fragment
so part of: sequence
location: complement(106106..106228)
location: region:106106-106228:-1
so has part: feature:106106-106228:-1:region

position:106106:-1
position: 106106
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:106228:-1
position: 106228
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:106106-106228:-1:region

CupepM_p06
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: nad1
locus tag: CupepM_p06
trans splicing: true
so part of: sequence
location: join(521041..521427,complement(107660..109477),complement(629432..633029))
location: region:107660-633029:1
so has part: feature:521041-521427:1:exon
so has part: feature:107660-109477:-1:exon
so has part: feature:629432-633029:-1:exon
subclass of: SO_0000010

9072868
type: Gene
SIO_000068: ncbigene

position:107660:1
position: 107660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:633029:-1
position: 633029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition
type: ReverseStrandPosition

urn:…
SIO_000300: 1
SIO_000628: feature:521041-521427:1:exon

position:521041:1
position: 521041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:521427:1
position: 521427
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:107660-109477:-1:exon

position:107660:-1
position: 107660
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:109477:-1
position: 109477
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:629432-633029:-1:exon

position:629432:-1
position: 629432
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CupepM_p06
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3663
gene: nad1
locus tag: CupepM_p06
exception: RNA editing
trans splicing: true
codon start: 1
product: NADH dehydrogenase subunit 1
translation: MYIAVPAEILGIILPLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGLKLMIKEPLSPSSANFFLFRMAPVATFMLSLVAWAVVPFDYGMVLSDLNIGLLYLFAISSLGVYGIIIAGWSSNSKYAFLGALRSAAQMVSYEVSIGLILITVLICVGSCNLSEIVMAQKQIWFGIPLFPVLVMFFISCLAETNRAPFDLPEAEAELVAGYNVEYSSMGFALFFLGEYANMILMSGLCTLLFLGGWLPILDLPIFKRIPGSIWFSIKVIFFLFLYIWVRAAFPRYRYDQLMGLGWKVFLPLSLAWVVLVSGVSVTFQWLP
SIO_010081: CupepM_p06
subclass of: SO_0000673
so part of: CupepM_p06
location: join(521041..521427,complement(109397..109477),complement(107660..107851),complement(632971..633029),complement(629432..629690))
location: region:107660-633029:1
so has part: feature:521041-521427:1:exon
so has part: feature:109397-109477:-1:exon
so has part: feature:107660-107851:-1:exon
so has part: feature:632971-633029:-1:exon
so has part: feature:629432-629690:-1:exon

YP_003587360.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:521041-521427:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:109397-109477:-1:exon

position:109397:-1
position: 109397
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:107660-107851:-1:exon

position:107851:-1
position: 107851
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:632971-633029:-1:exon

position:632971:-1
position: 632971
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:629432-629690:-1:exon

position:629690:-1
position: 629690
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CupepM_p06
type: Exon
subclass of: SO_0000147
RO_0002162: 3663
gene: nad1
locus tag: CupepM_p06
number: 3
SIO_010081: CupepM_p06
subclass of: SO_0000673
so part of: CupepM_p06
location: complement(107660..107851)
location: region:107660-107851:-1
so has part: feature:107660-107851:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:107660-107851:-1:exon

CupepM_p06
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad1
locus tag: CupepM_p06
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p06
subclass of: SO_0000673
so part of: CupepM_p06
location: complement(107685)
location: region:107685-107685:-1
so has part: feature:107685-107685:-1:exon

position:107685:-1
position: 107685
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:107685-107685:-1:exon

CupepM_p06
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad1
locus tag: CupepM_p06
note: C to U RNA editing; UCU(S) to UUU(F)
SIO_010081: CupepM_p06
subclass of: SO_0000673
so part of: CupepM_p06
location: complement(107784)
location: region:107784-107784:-1
so has part: feature:107784-107784:-1:exon

position:107784:-1
position: 107784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:107784-107784:-1:exon

CupepM_p06
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad1
locus tag: CupepM_p06
note: C to U RNA editing; UCG(S) to UUG(L)
SIO_010081: CupepM_p06
subclass of: SO_0000673
so part of: CupepM_p06
location: complement(107820)
location: region:107820-107820:-1
so has part: feature:107820-107820:-1:exon

position:107820:-1
position: 107820
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:107820-107820:-1:exon

CupepM_p06
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad1
locus tag: CupepM_p06
note: C to U RNA editing; CGU(R) to UGU(C)
SIO_010081: CupepM_p06
subclass of: SO_0000673
so part of: CupepM_p06
location: complement(107827)
location: region:107827-107827:-1
so has part: feature:107827-107827:-1:exon

position:107827:-1
position: 107827
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:107827-107827:-1:exon

CupepM_p06
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad1
locus tag: CupepM_p06
note: C to U RNA editing; CCC(P) to UCU(S)
SIO_010081: CupepM_p06
subclass of: SO_0000673
so part of: CupepM_p06
location: complement(107828)
location: region:107828-107828:-1
so has part: feature:107828-107828:-1:exon

position:107828:-1
position: 107828
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:107828-107828:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: C to U RNA editing; CCC(P) to UCU(S)
so part of: sequence
location: 107830
location: region:107830-107830:1
so has part: feature:107830-107830:1:region

position:107830:1
position: 107830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:107830-107830:1:region

CupepM_p06
type: Intron
subclass of: SO_0000188
RO_0002162: 3663
gene: nad1
locus tag: CupepM_p06
note: cis-spliced intron
number: 2
SIO_010081: CupepM_p06
subclass of: SO_0000673
so part of: CupepM_p06
location: complement(107852..109396)
location: region:107852-109396:-1
so has part: feature:107852-109396:-1:exon

position:107852:-1
position: 107852
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:109396:-1
position: 109396
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:107852-109396:-1:exon

CupepM_p06
type: Exon
subclass of: SO_0000147
RO_0002162: 3663
gene: nad1
locus tag: CupepM_p06
number: 2
SIO_010081: CupepM_p06
subclass of: SO_0000673
so part of: CupepM_p06
location: complement(109397..109477)
location: region:109397-109477:-1
so has part: feature:109397-109477:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:109397-109477:-1:exon

CupepM_p06
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad1
locus tag: CupepM_p06
note: partial C to U RNA editing; AUC(I) to AUY(I)
SIO_010081: CupepM_p06
subclass of: SO_0000673
so part of: CupepM_p06
location: complement(109412)
location: region:109412-109412:-1
so has part: feature:109412-109412:-1:exon

position:109412:-1
position: 109412
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:109412-109412:-1:exon

CupepM_p06
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad1
locus tag: CupepM_p06
note: C to U RNA editing; CCU(P) to UCU(S)
SIO_010081: CupepM_p06
subclass of: SO_0000673
so part of: CupepM_p06
location: complement(109429)
location: region:109429-109429:-1
so has part: feature:109429-109429:-1:exon

position:109429:-1
position: 109429
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:109429-109429:-1:exon

CupepM_p07
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: rps13
locus tag: CupepM_p07
so part of: sequence
location: complement(110335..110685)
location: region:110335-110685:-1
so has part: feature:110335-110685:-1:exon
subclass of: SO_0000010

9072831
type: Gene
SIO_000068: ncbigene

position:110335:-1
position: 110335
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:110685:-1
position: 110685
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:110335-110685:-1:exon

CupepM_p07
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3663
gene: rps13
locus tag: CupepM_p07
exception: RNA editing
codon start: 1
product: ribosomal protein S13
translation: MPYISGARLVADKQVRIALTKIDGIGPKKAIQVCYRLGISGNIKIKELTKSQIDQIEQMIGQDHIVHWELKRGERADIERVISLSCYRGIRHQDGLPLRGQRTHTNARTCRKRIRK
SIO_010081: CupepM_p07
subclass of: SO_0000673
so part of: CupepM_p07
location: complement(110335..110685)
location: region:110335-110685:-1
so has part: feature:110335-110685:-1:exon

YP_003587349.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:110335-110685:-1:exon

CupepM_p07
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps13
locus tag: CupepM_p07
note: partial C to U RNA editing; CGU(R) to YGU(R/C)
SIO_010081: CupepM_p07
subclass of: SO_0000673
so part of: CupepM_p07
location: complement(110586)
location: region:110586-110586:-1
so has part: feature:110586-110586:-1:exon

position:110586:-1
position: 110586
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:110586-110586:-1:exon

CupepM_p07
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps13
locus tag: CupepM_p07
note: partial C to U RNA editing; UCA(S) to UYA(S/L)
SIO_010081: CupepM_p07
subclass of: SO_0000673
so part of: CupepM_p07
location: complement(110630)
location: region:110630-110630:-1
so has part: feature:110630-110630:-1:exon

position:110630:-1
position: 110630
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:110630-110630:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: C to U RNA editing; UCA(S) to UUA(L)
so part of: sequence
location: 110660
location: region:110660-110660:1
so has part: feature:110660-110660:1:region

position:110660:1
position: 110660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:110660-110660:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: similar to chloroplast rbcL (LSC)
so part of: sequence
location: 136163..136933
location: region:136163-136933:1
so has part: feature:136163-136933:1:region

position:136163:1
position: 136163
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:136933:1
position: 136933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:136163-136933:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: similar to chloroplast LSC region from rpoC2 to rpoB
so part of: sequence
location: 143332..148528
location: region:143332-148528:1
so has part: feature:143332-148528:1:region

position:143332:1
position: 143332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:148528:1
position: 148528
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:143332-148528:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: similar to chloroplast IR region from rrn4.5 to rps12-trnV spacer
so part of: sequence
location: 154943..163203
location: region:154943-163203:1
so has part: feature:154943-163203:1:region

position:154943:1
position: 154943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:163203:1
position: 163203
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:154943-163203:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: degenerate chloroplast-like trnV embedded within larger region of chloroplast DNA
so part of: sequence
location: complement(161629..161670)
location: region:161629-161670:-1
so has part: feature:161629-161670:-1:region

position:161629:-1
position: 161629
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:161670:-1
position: 161670
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:161629-161670:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: nad2 exon 2 fragment
so part of: sequence
location: complement(167282..167314)
location: region:167282-167314:-1
so has part: feature:167282-167314:-1:region

position:167282:-1
position: 167282
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:167314:-1
position: 167314
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:167282-167314:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: similar to chloroplast ndhD (SSC)
so part of: sequence
location: 167990..168194
location: region:167990-168194:1
so has part: feature:167990-168194:1:region

position:167990:1
position: 167990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:168194:1
position: 168194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:167990-168194:1:region

CupepM_t02
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: trnM(CAT)-cp
locus tag: CupepM_t02
note: anticodon:CAT; chloroplast-like
so part of: sequence
location: 169697..169769
location: region:169697-169769:1
so has part: feature:169697-169769:1:exon
subclass of: SO_0000663

9072845
type: Gene
SIO_000068: ncbigene

position:169697:1
position: 169697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:169769:1
position: 169769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:169697-169769:1:exon

CupepM_t02
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3663
gene: trnM(CAT)-cp
locus tag: CupepM_t02
product: tRNA-Met
SIO_010081: CupepM_t02
subclass of: SO_0000673
so part of: CupepM_t02
location: 169697..169769
location: region:169697-169769:1
so has part: feature:169697-169769:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:169697-169769:1:exon

CupepM_t03
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: trnG(GCC)
locus tag: CupepM_t03
note: anticodon:GCC
so part of: sequence
location: 174750..174821
location: region:174750-174821:1
so has part: feature:174750-174821:1:exon
subclass of: SO_0000663

9072861
type: Gene
SIO_000068: ncbigene

position:174750:1
position: 174750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:174821:1
position: 174821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:174750-174821:1:exon

CupepM_t03
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3663
gene: trnG(GCC)
locus tag: CupepM_t03
product: tRNA-Gly
SIO_010081: CupepM_t03
subclass of: SO_0000673
so part of: CupepM_t03
location: 174750..174821
location: region:174750-174821:1
so has part: feature:174750-174821:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:174750-174821:1:exon

CupepM_p08
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: nad4
locus tag: CupepM_p08
so part of: sequence
location: 180990..189310
location: region:180990-189310:1
so has part: feature:180990-189310:1:exon
subclass of: SO_0000010

9072858
type: Gene
SIO_000068: ncbigene

position:180990:1
position: 180990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:189310:1
position: 189310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:180990-189310:1:exon

CupepM_p08
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3663
gene: nad4
locus tag: CupepM_p08
exception: RNA editing
codon start: 1
product: NADH dehydrogenase subunit 4
translation: MLEHFCECYFDLSGLILCPVLGSIVLLFIPNERIRLIRLIGLCASLITFLYSLVLWIQFDPSTAKFQFVESLRWLPYENINFSLGIDGISLFFVILTTFLIPICILVGWSGMRSYGKEYIIAFLICEFLMIAVFCMLDLLLFYVFFESVLIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTTDLQILLTTEFSERRQIFLWIAFFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTYGFLRFSIPMFPEATLCATPFIYTLSAIAIIYTSLTTLRQIDLKKIIAYSSVAHMNLVTIGIFSLNIQGIGGSILLMLSHGLVSSALFLCVGVLYDRHKTRLVRYYGGLVSTMPNFSTIFFFFTLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVSGNLKTDFLHKFSDLNGREVFIFIPFLVGVVRMGVHPKVFPDYMHTSVSNLVQHGKFH
SIO_010081: CupepM_p08
subclass of: SO_0000673
so part of: CupepM_p08
location: join(180990..181450,182837..183351,186508..186930,189222..189310)
location: region:180990-189310:1
so has part: feature:180990-181450:1:exon
so has part: feature:182837-183351:1:exon
so has part: feature:186508-186930:1:exon
so has part: feature:189222-189310:1:exon

YP_003587350.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:180990-181450:1:exon

position:181450:1
position: 181450
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:182837-183351:1:exon

position:182837:1
position: 182837
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:183351:1
position: 183351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:186508-186930:1:exon

position:186508:1
position: 186508
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:186930:1
position: 186930
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:189222-189310:1:exon

position:189222:1
position: 189222
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CupepM_p08
type: Exon
subclass of: SO_0000147
RO_0002162: 3663
gene: nad4
locus tag: CupepM_p08
number: 1
SIO_010081: CupepM_p08
subclass of: SO_0000673
so part of: CupepM_p08
location: 180990..181450
location: region:180990-181450:1
so has part: feature:180990-181450:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:180990-181450:1:exon

CupepM_p08
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4
locus tag: CupepM_p08
note: C to U RNA editing; UCU(S) to UUU(F)
SIO_010081: CupepM_p08
subclass of: SO_0000673
so part of: CupepM_p08
location: 181018
location: region:181018-181018:1
so has part: feature:181018-181018:1:exon

position:181018:1
position: 181018
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:181018-181018:1:exon

CupepM_p08
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4
locus tag: CupepM_p08
note: C to U RNA editing; CCU(P) to CUU(L)
SIO_010081: CupepM_p08
subclass of: SO_0000673
so part of: CupepM_p08
location: 181033
location: region:181033-181033:1
so has part: feature:181033-181033:1:exon

position:181033:1
position: 181033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:181033-181033:1:exon

CupepM_p08
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4
locus tag: CupepM_p08
note: C to U RNA editing; GCU(A) to GUU(V)
SIO_010081: CupepM_p08
subclass of: SO_0000673
so part of: CupepM_p08
location: 181063
location: region:181063-181063:1
so has part: feature:181063-181063:1:exon

position:181063:1
position: 181063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:181063-181063:1:exon

CupepM_p08
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4
locus tag: CupepM_p08
note: C to U RNA editing; CCU(P) to CUU(L)
SIO_010081: CupepM_p08
subclass of: SO_0000673
so part of: CupepM_p08
location: 181066
location: region:181066-181066:1
so has part: feature:181066-181066:1:exon

position:181066:1
position: 181066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:181066-181066:1:exon

CupepM_p08
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4
locus tag: CupepM_p08
note: C to U RNA editing; CCG(P) to CUG(L)
SIO_010081: CupepM_p08
subclass of: SO_0000673
so part of: CupepM_p08
location: 181096
location: region:181096-181096:1
so has part: feature:181096-181096:1:exon

position:181096:1
position: 181096
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:181096-181096:1:exon

CupepM_p08
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4
locus tag: CupepM_p08
note: C to U RNA editing; CCC(P) to UCC(S)
SIO_010081: CupepM_p08
subclass of: SO_0000673
so part of: CupepM_p08
location: 181143
location: region:181143-181143:1
so has part: feature:181143-181143:1:exon

position:181143:1
position: 181143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:181143-181143:1:exon

CupepM_p08
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4
locus tag: CupepM_p08
note: C to U RNA editing; CCU(P) to CUU(L)
SIO_010081: CupepM_p08
subclass of: SO_0000673
so part of: CupepM_p08
location: 181147
location: region:181147-181147:1
so has part: feature:181147-181147:1:exon

position:181147:1
position: 181147
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:181147-181147:1:exon

CupepM_p08
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4
locus tag: CupepM_p08
note: C to U RNA editing; CCU(P) to CUU(L)
SIO_010081: CupepM_p08
subclass of: SO_0000673
so part of: CupepM_p08
location: 181153
location: region:181153-181153:1
so has part: feature:181153-181153:1:exon

position:181153:1
position: 181153
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:181153-181153:1:exon

CupepM_p08
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4
locus tag: CupepM_p08
note: C to U RNA editing; CGG(R) to UGG(W)
SIO_010081: CupepM_p08
subclass of: SO_0000673
so part of: CupepM_p08
location: 181155
location: region:181155-181155:1
so has part: feature:181155-181155:1:exon

position:181155:1
position: 181155
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:181155-181155:1:exon

CupepM_p08
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4
locus tag: CupepM_p08
note: C to U RNA editing; UCU(S) to UUU(F)
SIO_010081: CupepM_p08
subclass of: SO_0000673
so part of: CupepM_p08
location: 181186
location: region:181186-181186:1
so has part: feature:181186-181186:1:exon

position:181186:1
position: 181186
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:181186-181186:1:exon

CupepM_p08
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4
locus tag: CupepM_p08
note: C to U RNA editing; ACA(T) to AUA(I)
SIO_010081: CupepM_p08
subclass of: SO_0000673
so part of: CupepM_p08
location: 181351
location: region:181351-181351:1
so has part: feature:181351-181351:1:exon

position:181351:1
position: 181351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:181351-181351:1:exon

CupepM_p08
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4
locus tag: CupepM_p08
note: C to U RNA editing; UCU(S) to UUU(F)
SIO_010081: CupepM_p08
subclass of: SO_0000673
so part of: CupepM_p08
location: 181357
location: region:181357-181357:1
so has part: feature:181357-181357:1:exon

position:181357:1
position: 181357
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:181357-181357:1:exon

CupepM_p08
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4
locus tag: CupepM_p08
note: C to U RNA editing; CGU(R) to UGU(C)
SIO_010081: CupepM_p08
subclass of: SO_0000673
so part of: CupepM_p08
location: 181365
location: region:181365-181365:1
so has part: feature:181365-181365:1:exon

position:181365:1
position: 181365
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:181365-181365:1:exon

CupepM_p08
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4
locus tag: CupepM_p08
note: C to U RNA editing; CCU(P) to CUU(L)
SIO_010081: CupepM_p08
subclass of: SO_0000673
so part of: CupepM_p08
location: 181405
location: region:181405-181405:1
so has part: feature:181405-181405:1:exon

position:181405:1
position: 181405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:181405-181405:1:exon

CupepM_p08
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4
locus tag: CupepM_p08
note: C to U RNA editing; CUU(L) to UUU(F)
SIO_010081: CupepM_p08
subclass of: SO_0000673
so part of: CupepM_p08
location: 181422
location: region:181422-181422:1
so has part: feature:181422-181422:1:exon

position:181422:1
position: 181422
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:181422-181422:1:exon

CupepM_p08
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4
locus tag: CupepM_p08
note: C to U RNA editing; CCC(P) to UUC(F)
SIO_010081: CupepM_p08
subclass of: SO_0000673
so part of: CupepM_p08
location: 181425
location: region:181425-181425:1
so has part: feature:181425-181425:1:exon

position:181425:1
position: 181425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:181425-181425:1:exon

CupepM_p08
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4
locus tag: CupepM_p08
note: C to U RNA editing; CCC(P) to UUC(F)
SIO_010081: CupepM_p08
subclass of: SO_0000673
so part of: CupepM_p08
location: 181426
location: region:181426-181426:1
so has part: feature:181426-181426:1:exon

position:181426:1
position: 181426
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:181426-181426:1:exon

CupepM_p08
type: Intron
subclass of: SO_0000188
RO_0002162: 3663
gene: nad4
locus tag: CupepM_p08
number: 1
SIO_010081: CupepM_p08
subclass of: SO_0000673
so part of: CupepM_p08
location: 181451..182836
location: region:181451-182836:1
so has part: feature:181451-182836:1:exon

position:181451:1
position: 181451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:182836:1
position: 182836
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:181451-182836:1:exon

CupepM_p08
type: Exon
subclass of: SO_0000147
RO_0002162: 3663
gene: nad4
locus tag: CupepM_p08
number: 2
SIO_010081: CupepM_p08
subclass of: SO_0000673
so part of: CupepM_p08
location: 182837..183351
location: region:182837-183351:1
so has part: feature:182837-183351:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:182837-183351:1:exon

CupepM_p08
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4
locus tag: CupepM_p08
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p08
subclass of: SO_0000673
so part of: CupepM_p08
location: 182983
location: region:182983-182983:1
so has part: feature:182983-182983:1:exon

position:182983:1
position: 182983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:182983-182983:1:exon

CupepM_p08
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4
locus tag: CupepM_p08
note: C to U RNA editing; UCU(S) to UUU(F)
SIO_010081: CupepM_p08
subclass of: SO_0000673
so part of: CupepM_p08
location: 183034
location: region:183034-183034:1
so has part: feature:183034-183034:1:exon

position:183034:1
position: 183034
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:183034-183034:1:exon

CupepM_p08
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4
locus tag: CupepM_p08
note: C to U RNA editing; CAC(H) to UAC(Y)
SIO_010081: CupepM_p08
subclass of: SO_0000673
so part of: CupepM_p08
location: 183159
location: region:183159-183159:1
so has part: feature:183159-183159:1:exon

position:183159:1
position: 183159
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:183159-183159:1:exon

CupepM_p08
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4
locus tag: CupepM_p08
note: partial C to U RNA editing; CUA(L) to YUA(L)
SIO_010081: CupepM_p08
subclass of: SO_0000673
so part of: CupepM_p08
location: 183231
location: region:183231-183231:1
so has part: feature:183231-183231:1:exon

position:183231:1
position: 183231
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:183231-183231:1:exon

CupepM_p08
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4
locus tag: CupepM_p08
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p08
subclass of: SO_0000673
so part of: CupepM_p08
location: 183271
location: region:183271-183271:1
so has part: feature:183271-183271:1:exon

position:183271:1
position: 183271
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:183271-183271:1:exon

CupepM_p08
type: Intron
subclass of: SO_0000188
RO_0002162: 3663
gene: nad4
locus tag: CupepM_p08
number: 2
SIO_010081: CupepM_p08
subclass of: SO_0000673
so part of: CupepM_p08
location: 183352..186507
location: region:183352-186507:1
so has part: feature:183352-186507:1:exon

position:183352:1
position: 183352
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:186507:1
position: 186507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:183352-186507:1:exon

CupepM_p08
type: Exon
subclass of: SO_0000147
RO_0002162: 3663
gene: nad4
locus tag: CupepM_p08
number: 3
SIO_010081: CupepM_p08
subclass of: SO_0000673
so part of: CupepM_p08
location: 186508..186930
location: region:186508-186930:1
so has part: feature:186508-186930:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:186508-186930:1:exon

CupepM_p08
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4
locus tag: CupepM_p08
note: C to U RNA editing; CCG(P) to CUG(L)
SIO_010081: CupepM_p08
subclass of: SO_0000673
so part of: CupepM_p08
location: 186508
location: region:186508-186508:1
so has part: feature:186508-186508:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:186508-186508:1:exon

CupepM_p08
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4
locus tag: CupepM_p08
note: C to U RNA editing; CUA(L) to UUA(L)
SIO_010081: CupepM_p08
subclass of: SO_0000673
so part of: CupepM_p08
location: 186537
location: region:186537-186537:1
so has part: feature:186537-186537:1:exon

position:186537:1
position: 186537
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:186537-186537:1:exon

CupepM_p08
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4
locus tag: CupepM_p08
note: C to U RNA editing; CCU(P) to UCU(S)
SIO_010081: CupepM_p08
subclass of: SO_0000673
so part of: CupepM_p08
location: 186564
location: region:186564-186564:1
so has part: feature:186564-186564:1:exon

position:186564:1
position: 186564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:186564-186564:1:exon

CupepM_p08
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4
locus tag: CupepM_p08
note: C to U RNA editing; UAC(Y) to UAU(Y)
SIO_010081: CupepM_p08
subclass of: SO_0000673
so part of: CupepM_p08
location: 186632
location: region:186632-186632:1
so has part: feature:186632-186632:1:exon

position:186632:1
position: 186632
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:186632-186632:1:exon

CupepM_p08
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4
locus tag: CupepM_p08
note: C to U RNA editing; CUC(L) to UUC(F)
SIO_010081: CupepM_p08
subclass of: SO_0000673
so part of: CupepM_p08
location: 186660
location: region:186660-186660:1
so has part: feature:186660-186660:1:exon

position:186660:1
position: 186660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:186660-186660:1:exon

CupepM_p08
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4
locus tag: CupepM_p08
note: C to U RNA editing; UCC(S) to UUC(F)
SIO_010081: CupepM_p08
subclass of: SO_0000673
so part of: CupepM_p08
location: 186673
location: region:186673-186673:1
so has part: feature:186673-186673:1:exon

position:186673:1
position: 186673
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:186673-186673:1:exon

CupepM_p08
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4
locus tag: CupepM_p08
note: C to U RNA editing; UCU(S) to UUU(F)
SIO_010081: CupepM_p08
subclass of: SO_0000673
so part of: CupepM_p08
location: 186679
location: region:186679-186679:1
so has part: feature:186679-186679:1:exon

position:186679:1
position: 186679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:186679-186679:1:exon

CupepM_p08
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4
locus tag: CupepM_p08
note: C to U RNA editing; CCC(P) to CUC(L)
SIO_010081: CupepM_p08
subclass of: SO_0000673
so part of: CupepM_p08
location: 186736
location: region:186736-186736:1
so has part: feature:186736-186736:1:exon

position:186736:1
position: 186736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:186736-186736:1:exon

CupepM_p08
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4
locus tag: CupepM_p08
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p08
subclass of: SO_0000673
so part of: CupepM_p08
location: 186742
location: region:186742-186742:1
so has part: feature:186742-186742:1:exon

position:186742:1
position: 186742
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:186742-186742:1:exon

CupepM_p08
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4
locus tag: CupepM_p08
note: C to U RNA editing; CCA(P) to CUA(L)
SIO_010081: CupepM_p08
subclass of: SO_0000673
so part of: CupepM_p08
location: 186886
location: region:186886-186886:1
so has part: feature:186886-186886:1:exon

position:186886:1
position: 186886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:186886-186886:1:exon

CupepM_p08
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4
locus tag: CupepM_p08
note: C to U RNA editing; UCC(S) to UUC(F)
SIO_010081: CupepM_p08
subclass of: SO_0000673
so part of: CupepM_p08
location: 186904
location: region:186904-186904:1
so has part: feature:186904-186904:1:exon

position:186904:1
position: 186904
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:186904-186904:1:exon

CupepM_p08
type: Intron
subclass of: SO_0000188
RO_0002162: 3663
gene: nad4
locus tag: CupepM_p08
number: 3
SIO_010081: CupepM_p08
subclass of: SO_0000673
so part of: CupepM_p08
location: 186931..189221
location: region:186931-189221:1
so has part: feature:186931-189221:1:exon

position:186931:1
position: 186931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:189221:1
position: 189221
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:186931-189221:1:exon

CupepM_p08
type: Exon
subclass of: SO_0000147
RO_0002162: 3663
gene: nad4
locus tag: CupepM_p08
number: 4
SIO_010081: CupepM_p08
subclass of: SO_0000673
so part of: CupepM_p08
location: 189222..189310
location: region:189222-189310:1
so has part: feature:189222-189310:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:189222-189310:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: nad9 fragment
so part of: sequence
location: 224001..224042
location: region:224001-224042:1
so has part: feature:224001-224042:1:region

position:224001:1
position: 224001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:224042:1
position: 224042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:224001-224042:1:region

CupepM_p09
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: cox2
locus tag: CupepM_p09
so part of: sequence
location: 224130..226921
location: region:224130-226921:1
so has part: feature:224130-226921:1:exon
subclass of: SO_0000010

9072834
type: Gene
SIO_000068: ncbigene

position:224130:1
position: 224130
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:226921:1
position: 226921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:224130-226921:1:exon

CupepM_p09
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3663
gene: cox2
locus tag: CupepM_p09
exception: RNA editing
codon start: 1
product: cytochrome c oxidase subunit 2
translation: MIVLKWLFLTIALCDAAEPWQLGFQDAATPMMQGIIDLHHDIFFFLILLFVFVSWILVRALWHFHYKQNQIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYWTYEYSDYNSSDEESLTFDSYMIPEDDLELGQLRLLEVDNRVVLPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISILVQREGVYYGQCSEICGTNHAFMPIVVEAVSRKDYGSRVSNQLIPKTGEA
SIO_010081: CupepM_p09
subclass of: SO_0000673
so part of: CupepM_p09
location: join(224130..224829,226839..226921)
location: region:224130-226921:1
so has part: feature:224130-224829:1:exon
so has part: feature:226839-226921:1:exon

YP_003587351.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:224130-224829:1:exon

position:224829:1
position: 224829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:226839-226921:1:exon

position:226839:1
position: 226839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CupepM_p09
type: Exon
subclass of: SO_0000147
RO_0002162: 3663
gene: cox2
locus tag: CupepM_p09
number: 1
SIO_010081: CupepM_p09
subclass of: SO_0000673
so part of: CupepM_p09
location: 224130..224829
location: region:224130-224829:1
so has part: feature:224130-224829:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:224130-224829:1:exon

CupepM_p09
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cox2
locus tag: CupepM_p09
note: C to U RNA editing; CCU(P) to CUU(L)
SIO_010081: CupepM_p09
subclass of: SO_0000673
so part of: CupepM_p09
location: 224167
location: region:224167-224167:1
so has part: feature:224167-224167:1:exon

position:224167:1
position: 224167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:224167-224167:1:exon

CupepM_p09
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cox2
locus tag: CupepM_p09
note: C to U RNA editing; UCU(S) to UUU(F)
SIO_010081: CupepM_p09
subclass of: SO_0000673
so part of: CupepM_p09
location: 224200
location: region:224200-224200:1
so has part: feature:224200-224200:1:exon

position:224200:1
position: 224200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:224200-224200:1:exon

CupepM_p09
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cox2
locus tag: CupepM_p09
note: C to U RNA editing; CGG(R) to UGG(W)
SIO_010081: CupepM_p09
subclass of: SO_0000673
so part of: CupepM_p09
location: 224292
location: region:224292-224292:1
so has part: feature:224292-224292:1:exon

position:224292:1
position: 224292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:224292-224292:1:exon

CupepM_p09
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cox2
locus tag: CupepM_p09
note: C to U RNA editing; CCG(P) to CUG(L)
SIO_010081: CupepM_p09
subclass of: SO_0000673
so part of: CupepM_p09
location: 224407
location: region:224407-224407:1
so has part: feature:224407-224407:1:exon

position:224407:1
position: 224407
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:224407-224407:1:exon

CupepM_p09
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cox2
locus tag: CupepM_p09
note: C to U RNA editing; CGG(R) to UGG(W)
SIO_010081: CupepM_p09
subclass of: SO_0000673
so part of: CupepM_p09
location: 224508
location: region:224508-224508:1
so has part: feature:224508-224508:1:exon

position:224508:1
position: 224508
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:224508-224508:1:exon

CupepM_p09
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cox2
locus tag: CupepM_p09
note: C to U RNA editing; ACG(T) to AUG(M)
SIO_010081: CupepM_p09
subclass of: SO_0000673
so part of: CupepM_p09
location: 224572
location: region:224572-224572:1
so has part: feature:224572-224572:1:exon

position:224572:1
position: 224572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:224572-224572:1:exon

CupepM_p09
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cox2
locus tag: CupepM_p09
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p09
subclass of: SO_0000673
so part of: CupepM_p09
location: 224605
location: region:224605-224605:1
so has part: feature:224605-224605:1:exon

position:224605:1
position: 224605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:224605-224605:1:exon

CupepM_p09
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cox2
locus tag: CupepM_p09
note: C to U RNA editing; CCU(P) to UCU(S)
SIO_010081: CupepM_p09
subclass of: SO_0000673
so part of: CupepM_p09
location: 224673
location: region:224673-224673:1
so has part: feature:224673-224673:1:exon

position:224673:1
position: 224673
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:224673-224673:1:exon

CupepM_p09
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cox2
locus tag: CupepM_p09
note: C to U RNA editing; CCU(P) to CUU(L)
SIO_010081: CupepM_p09
subclass of: SO_0000673
so part of: CupepM_p09
location: 224686
location: region:224686-224686:1
so has part: feature:224686-224686:1:exon

position:224686:1
position: 224686
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:224686-224686:1:exon

CupepM_p09
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cox2
locus tag: CupepM_p09
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p09
subclass of: SO_0000673
so part of: CupepM_p09
location: 224710
location: region:224710-224710:1
so has part: feature:224710-224710:1:exon

position:224710:1
position: 224710
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:224710-224710:1:exon

CupepM_p09
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cox2
locus tag: CupepM_p09
note: C to U RNA editing; ACG(T) to AUG(M)
SIO_010081: CupepM_p09
subclass of: SO_0000673
so part of: CupepM_p09
location: 224827
location: region:224827-224827:1
so has part: feature:224827-224827:1:exon

position:224827:1
position: 224827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:224827-224827:1:exon

CupepM_p09
type: Intron
subclass of: SO_0000188
RO_0002162: 3663
gene: cox2
locus tag: CupepM_p09
SIO_010081: CupepM_p09
subclass of: SO_0000673
so part of: CupepM_p09
location: 224830..226838
location: region:224830-226838:1
so has part: feature:224830-226838:1:exon

position:224830:1
position: 224830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:226838:1
position: 226838
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:224830-226838:1:exon

CupepM_p09
type: Exon
subclass of: SO_0000147
RO_0002162: 3663
gene: cox2
locus tag: CupepM_p09
number: 2
SIO_010081: CupepM_p09
subclass of: SO_0000673
so part of: CupepM_p09
location: 226839..226921
location: region:226839-226921:1
so has part: feature:226839-226921:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:226839-226921:1:exon

CupepM_p09
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cox2
locus tag: CupepM_p09
note: C to U RNA editing; CCU(P) to UCU(S)
SIO_010081: CupepM_p09
subclass of: SO_0000673
so part of: CupepM_p09
location: 226859
location: region:226859-226859:1
so has part: feature:226859-226859:1:exon

position:226859:1
position: 226859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:226859-226859:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: similar to chloroplast LSC region from rpoA to psbB
so part of: sequence
location: 243377..247424
location: region:243377-247424:1
so has part: feature:243377-247424:1:region

position:243377:1
position: 243377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:247424:1
position: 247424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:243377-247424:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: similar to chloroplast LSC region from cemA to petA
so part of: sequence
location: 252510..253557
location: region:252510-253557:1
so has part: feature:252510-253557:1:region

position:252510:1
position: 252510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:253557:1
position: 253557
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:252510-253557:1:region

CupepM_t04
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: trnE(TTC)
locus tag: CupepM_t04
note: anticodon:TTC
so part of: sequence
location: complement(265505..265576)
location: region:265505-265576:-1
so has part: feature:265505-265576:-1:exon
subclass of: SO_0000663

9072827
type: Gene
SIO_000068: ncbigene

position:265505:-1
position: 265505
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:265576:-1
position: 265576
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:265505-265576:-1:exon

CupepM_t04
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3663
gene: trnE(TTC)
locus tag: CupepM_t04
product: tRNA-Glu
SIO_010081: CupepM_t04
subclass of: SO_0000673
so part of: CupepM_t04
location: complement(265505..265576)
location: region:265505-265576:-1
so has part: feature:265505-265576:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:265505-265576:-1:exon

CupepM_t05
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: trnH(GTG)-cp
locus tag: CupepM_t05
note: anticodon:GTG; chloroplast-like
so part of: sequence
location: 267364..267437
location: region:267364-267437:1
so has part: feature:267364-267437:1:exon
subclass of: SO_0000663

9072857
type: Gene
SIO_000068: ncbigene

position:267364:1
position: 267364
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:267437:1
position: 267437
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:267364-267437:1:exon

CupepM_t05
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3663
gene: trnH(GTG)-cp
locus tag: CupepM_t05
product: tRNA-His
SIO_010081: CupepM_t05
subclass of: SO_0000673
so part of: CupepM_t05
location: 267364..267437
location: region:267364-267437:1
so has part: feature:267364-267437:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:267364-267437:1:exon

CupepM_p10
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: nad7
locus tag: CupepM_p10
so part of: sequence
location: complement(280979..287244)
location: region:280979-287244:-1
so has part: feature:280979-287244:-1:exon
subclass of: SO_0000010

9072859
type: Gene
SIO_000068: ncbigene

position:280979:-1
position: 280979
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:287244:-1
position: 287244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:280979-287244:-1:exon

CupepM_p10
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3663
gene: nad7
locus tag: CupepM_p10
exception: RNA editing
codon start: 1
product: NADH dehydrogenase subunit 7
translation: MTTSKRQITNFTLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMAQEHAYSLAVERLLNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMDVGALTPFLWAFEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCRDIDSFTQQFASRIDELEEMLTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGSGVCWDLRRAAPYDVYDQLDFDVPVGTRGDCYDRYCIRIEEMRQSVRIIVQCLNQMPSGMIKADDRKLCPPSRSRMKLSMESLIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLDFMAKHHMLADVVTIIGTQDIVSGEVDR
SIO_010081: CupepM_p10
subclass of: SO_0000673
so part of: CupepM_p10
location: complement(join(280979..281240,283088..283332,284384..284849,286135..286203,287102..287244))
location: region:280979-287244:-1
so has part: feature:287102-287244:-1:exon
so has part: feature:286135-286203:-1:exon
so has part: feature:284384-284849:-1:exon
so has part: feature:283088-283332:-1:exon
so has part: feature:280979-281240:-1:exon

YP_003587352.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:287102-287244:-1:exon

position:287102:-1
position: 287102
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:286135-286203:-1:exon

position:286135:-1
position: 286135
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:286203:-1
position: 286203
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:284384-284849:-1:exon

position:284384:-1
position: 284384
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:284849:-1
position: 284849
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:283088-283332:-1:exon

position:283088:-1
position: 283088
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:283332:-1
position: 283332
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:280979-281240:-1:exon

position:281240:-1
position: 281240
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CupepM_p10
type: Exon
subclass of: SO_0000147
RO_0002162: 3663
gene: nad7
locus tag: CupepM_p10
number: 5
SIO_010081: CupepM_p10
subclass of: SO_0000673
so part of: CupepM_p10
location: complement(280979..281240)
location: region:280979-281240:-1
so has part: feature:280979-281240:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:280979-281240:-1:exon

CupepM_p10
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad7
locus tag: CupepM_p10
note: C to U RNA editing; CCA(P) to CUA(L)
SIO_010081: CupepM_p10
subclass of: SO_0000673
so part of: CupepM_p10
location: complement(281040)
location: region:281040-281040:-1
so has part: feature:281040-281040:-1:exon

position:281040:-1
position: 281040
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:281040-281040:-1:exon

CupepM_p10
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad7
locus tag: CupepM_p10
note: C to U RNA editing; UCU(S) to UUU(F)
SIO_010081: CupepM_p10
subclass of: SO_0000673
so part of: CupepM_p10
location: complement(281061)
location: region:281061-281061:-1
so has part: feature:281061-281061:-1:exon

position:281061:-1
position: 281061
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:281061-281061:-1:exon

CupepM_p10
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad7
locus tag: CupepM_p10
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p10
subclass of: SO_0000673
so part of: CupepM_p10
location: complement(281076)
location: region:281076-281076:-1
so has part: feature:281076-281076:-1:exon

position:281076:-1
position: 281076
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:281076-281076:-1:exon

CupepM_p10
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad7
locus tag: CupepM_p10
note: C to U RNA editing; UCU(S) to UUU(F)
SIO_010081: CupepM_p10
subclass of: SO_0000673
so part of: CupepM_p10
location: complement(281085)
location: region:281085-281085:-1
so has part: feature:281085-281085:-1:exon

position:281085:-1
position: 281085
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:281085-281085:-1:exon

CupepM_p10
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad7
locus tag: CupepM_p10
note: C to U RNA editing; CGU(R) to UGU(C)
SIO_010081: CupepM_p10
subclass of: SO_0000673
so part of: CupepM_p10
location: complement(281107)
location: region:281107-281107:-1
so has part: feature:281107-281107:-1:exon

position:281107:-1
position: 281107
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:281107-281107:-1:exon

CupepM_p10
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad7
locus tag: CupepM_p10
note: C to U RNA editing; CCC(P) to CCU(P)
SIO_010081: CupepM_p10
subclass of: SO_0000673
so part of: CupepM_p10
location: complement(281114)
location: region:281114-281114:-1
so has part: feature:281114-281114:-1:exon

position:281114:-1
position: 281114
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:281114-281114:-1:exon

CupepM_p10
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad7
locus tag: CupepM_p10
note: C to U RNA editing; UCC(S) to UCU(S)
SIO_010081: CupepM_p10
subclass of: SO_0000673
so part of: CupepM_p10
location: complement(281201)
location: region:281201-281201:-1
so has part: feature:281201-281201:-1:exon

position:281201:-1
position: 281201
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:281201-281201:-1:exon

CupepM_p10
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad7
locus tag: CupepM_p10
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p10
subclass of: SO_0000673
so part of: CupepM_p10
location: complement(281238)
location: region:281238-281238:-1
so has part: feature:281238-281238:-1:exon

position:281238:-1
position: 281238
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:281238-281238:-1:exon

CupepM_p10
type: Intron
subclass of: SO_0000188
RO_0002162: 3663
gene: nad7
locus tag: CupepM_p10
number: 4
SIO_010081: CupepM_p10
subclass of: SO_0000673
so part of: CupepM_p10
location: complement(281241..283087)
location: region:281241-283087:-1
so has part: feature:281241-283087:-1:exon

position:281241:-1
position: 281241
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:283087:-1
position: 283087
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:281241-283087:-1:exon

CupepM_p10
type: Exon
subclass of: SO_0000147
RO_0002162: 3663
gene: nad7
locus tag: CupepM_p10
number: 4
SIO_010081: CupepM_p10
subclass of: SO_0000673
so part of: CupepM_p10
location: complement(283088..283332)
location: region:283088-283332:-1
so has part: feature:283088-283332:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:283088-283332:-1:exon

CupepM_p10
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad7
locus tag: CupepM_p10
note: C to U RNA editing; CCU(P) to CUU(L)
SIO_010081: CupepM_p10
subclass of: SO_0000673
so part of: CupepM_p10
location: complement(283175)
location: region:283175-283175:-1
so has part: feature:283175-283175:-1:exon

position:283175:-1
position: 283175
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:283175-283175:-1:exon

CupepM_p10
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad7
locus tag: CupepM_p10
note: C to U RNA editing; AUC(I) to AUU(I)
SIO_010081: CupepM_p10
subclass of: SO_0000673
so part of: CupepM_p10
location: complement(283222)
location: region:283222-283222:-1
so has part: feature:283222-283222:-1:exon

position:283222:-1
position: 283222
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:283222-283222:-1:exon

CupepM_p10
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad7
locus tag: CupepM_p10
note: C to U RNA editing; CCU(P) to UUU(F)
SIO_010081: CupepM_p10
subclass of: SO_0000673
so part of: CupepM_p10
location: complement(283271)
location: region:283271-283271:-1
so has part: feature:283271-283271:-1:exon

position:283271:-1
position: 283271
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:283271-283271:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: C to U RNA editing; CCU(P) to UUU(F)
so part of: sequence
location: 283272
location: region:283272-283272:1
so has part: feature:283272-283272:1:region

position:283272:1
position: 283272
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:283272-283272:1:region

CupepM_p10
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad7
locus tag: CupepM_p10
note: C to U RNA editing; CAU(H) to UAU(Y)
SIO_010081: CupepM_p10
subclass of: SO_0000673
so part of: CupepM_p10
location: complement(283287)
location: region:283287-283287:-1
so has part: feature:283287-283287:-1:exon

position:283287:-1
position: 283287
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:283287-283287:-1:exon

CupepM_p10
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad7
locus tag: CupepM_p10
note: C to U RNA editing; CCA(P) to UCA(S)
SIO_010081: CupepM_p10
subclass of: SO_0000673
so part of: CupepM_p10
location: complement(283332)
location: region:283332-283332:-1
so has part: feature:283332-283332:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:283332-283332:-1:exon

CupepM_p10
type: Intron
subclass of: SO_0000188
RO_0002162: 3663
gene: nad7
locus tag: CupepM_p10
number: 3
SIO_010081: CupepM_p10
subclass of: SO_0000673
so part of: CupepM_p10
location: complement(283333..284383)
location: region:283333-284383:-1
so has part: feature:283333-284383:-1:exon

position:283333:-1
position: 283333
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:284383:-1
position: 284383
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:283333-284383:-1:exon

CupepM_p10
type: Exon
subclass of: SO_0000147
RO_0002162: 3663
gene: nad7
locus tag: CupepM_p10
number: 3
SIO_010081: CupepM_p10
subclass of: SO_0000673
so part of: CupepM_p10
location: complement(284384..284849)
location: region:284384-284849:-1
so has part: feature:284384-284849:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:284384-284849:-1:exon

CupepM_p10
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad7
locus tag: CupepM_p10
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p10
subclass of: SO_0000673
so part of: CupepM_p10
location: complement(284484)
location: region:284484-284484:-1
so has part: feature:284484-284484:-1:exon

position:284484:-1
position: 284484
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:284484-284484:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: C to U RNA editing; UCA(S) to UUA(L)
so part of: sequence
location: 284679
location: region:284679-284679:1
so has part: feature:284679-284679:1:region

position:284679:1
position: 284679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:284679-284679:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: C to U RNA editing; UCA(S) to UUA(L)
so part of: sequence
location: 284718
location: region:284718-284718:1
so has part: feature:284718-284718:1:region

position:284718:1
position: 284718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:284718-284718:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: C to U RNA editing; UCA(S) to UUA(L)
so part of: sequence
location: 284727
location: region:284727-284727:1
so has part: feature:284727-284727:1:region

position:284727:1
position: 284727
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:284727-284727:1:region

CupepM_p10
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad7
locus tag: CupepM_p10
note: C to U RNA editing; CGU(R) to UGU(C)
SIO_010081: CupepM_p10
subclass of: SO_0000673
so part of: CupepM_p10
location: complement(284746)
location: region:284746-284746:-1
so has part: feature:284746-284746:-1:exon

position:284746:-1
position: 284746
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:284746-284746:-1:exon

CupepM_p10
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad7
locus tag: CupepM_p10
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p10
subclass of: SO_0000673
so part of: CupepM_p10
location: complement(284811)
location: region:284811-284811:-1
so has part: feature:284811-284811:-1:exon

position:284811:-1
position: 284811
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:284811-284811:-1:exon

CupepM_p10
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad7
locus tag: CupepM_p10
note: C to U RNA editing; CAU(H) to UAU(Y)
SIO_010081: CupepM_p10
subclass of: SO_0000673
so part of: CupepM_p10
location: complement(284818)
location: region:284818-284818:-1
so has part: feature:284818-284818:-1:exon

position:284818:-1
position: 284818
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:284818-284818:-1:exon

CupepM_p10
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad7
locus tag: CupepM_p10
note: C to U RNA editing; ACG(T) to AUG(M)
SIO_010081: CupepM_p10
subclass of: SO_0000673
so part of: CupepM_p10
location: complement(284838)
location: region:284838-284838:-1
so has part: feature:284838-284838:-1:exon

position:284838:-1
position: 284838
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:284838-284838:-1:exon

CupepM_p10
type: Intron
subclass of: SO_0000188
RO_0002162: 3663
gene: nad7
locus tag: CupepM_p10
number: 2
SIO_010081: CupepM_p10
subclass of: SO_0000673
so part of: CupepM_p10
location: complement(284850..286134)
location: region:284850-286134:-1
so has part: feature:284850-286134:-1:exon

position:284850:-1
position: 284850
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:286134:-1
position: 286134
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:284850-286134:-1:exon

CupepM_p10
type: Exon
subclass of: SO_0000147
RO_0002162: 3663
gene: nad7
locus tag: CupepM_p10
number: 2
SIO_010081: CupepM_p10
subclass of: SO_0000673
so part of: CupepM_p10
location: complement(286135..286203)
location: region:286135-286203:-1
so has part: feature:286135-286203:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:286135-286203:-1:exon

CupepM_p10
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad7
locus tag: CupepM_p10
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p10
subclass of: SO_0000673
so part of: CupepM_p10
location: complement(286138)
location: region:286138-286138:-1
so has part: feature:286138-286138:-1:exon

position:286138:-1
position: 286138
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:286138-286138:-1:exon

CupepM_p10
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad7
locus tag: CupepM_p10
note: C to U RNA editing; UCU(S) to UUU(F)
SIO_010081: CupepM_p10
subclass of: SO_0000673
so part of: CupepM_p10
location: complement(286147)
location: region:286147-286147:-1
so has part: feature:286147-286147:-1:exon

position:286147:-1
position: 286147
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:286147-286147:-1:exon

CupepM_p10
type: Intron
subclass of: SO_0000188
RO_0002162: 3663
gene: nad7
locus tag: CupepM_p10
number: 1
SIO_010081: CupepM_p10
subclass of: SO_0000673
so part of: CupepM_p10
location: complement(286204..287101)
location: region:286204-287101:-1
so has part: feature:286204-287101:-1:exon

position:286204:-1
position: 286204
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:287101:-1
position: 287101
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:286204-287101:-1:exon

CupepM_p10
type: Exon
subclass of: SO_0000147
RO_0002162: 3663
gene: nad7
locus tag: CupepM_p10
number: 1
SIO_010081: CupepM_p10
subclass of: SO_0000673
so part of: CupepM_p10
location: complement(287102..287244)
location: region:287102-287244:-1
so has part: feature:287102-287244:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:287102-287244:-1:exon

CupepM_p10
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad7
locus tag: CupepM_p10
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p10
subclass of: SO_0000673
so part of: CupepM_p10
location: complement(287162)
location: region:287162-287162:-1
so has part: feature:287162-287162:-1:exon

position:287162:-1
position: 287162
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:287162-287162:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: C to U RNA editing; UCA(S) to UUA(L)
so part of: sequence
location: 287168
location: region:287168-287168:1
so has part: feature:287168-287168:1:region

position:287168:1
position: 287168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:287168-287168:1:region

CupepM_p10
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad7
locus tag: CupepM_p10
note: C to U RNA editing; UCC(S) to UUU(F)
SIO_010081: CupepM_p10
subclass of: SO_0000673
so part of: CupepM_p10
location: complement(287200)
location: region:287200-287200:-1
so has part: feature:287200-287200:-1:exon

position:287200:-1
position: 287200
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:287200-287200:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: C to U RNA editing; UCC(S) to UUU(F)
so part of: sequence
location: 287201
location: region:287201-287201:1
so has part: feature:287201-287201:1:region

position:287201:1
position: 287201
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:287201-287201:1:region

CupepM_p10
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad7
locus tag: CupepM_p10
note: C to U RNA editing; UCG(S) to UUG(L)
SIO_010081: CupepM_p10
subclass of: SO_0000673
so part of: CupepM_p10
location: complement(287207)
location: region:287207-287207:-1
so has part: feature:287207-287207:-1:exon

position:287207:-1
position: 287207
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:287207-287207:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: similar to chloroplast LSC region from rps4-trnT spacer to rpoB
so part of: sequence
location: complement(291692..310225)
location: region:291692-310225:-1
so has part: feature:291692-310225:-1:region

position:291692:-1
position: 291692
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:310225:-1
position: 310225
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:291692-310225:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: degenerate chloroplast-like trnS embedded within larger region of chloroplast DNA
pseudo: true
so part of: sequence
location: complement(292522..292621)
location: region:292522-292621:-1
so has part: feature:292522-292621:-1:region

position:292522:-1
position: 292522
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:292621:-1
position: 292621
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:292522-292621:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: putative trnfM(CAT)-cp with anticodon CAT; intact chloroplast-like trnfM embedded within larger region of chloroplast DNA; possibly functional
so part of: sequence
location: 299903..299978
location: region:299903-299978:1
so has part: feature:299903-299978:1:region

position:299903:1
position: 299903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:299978:1
position: 299978
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:299903-299978:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: degenerate chloroplast-like trnS embedded within larger region of chloroplast DNA
so part of: sequence
location: 300640..300743
location: region:300640-300743:1
so has part: feature:300640-300743:1:region

position:300640:1
position: 300640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:300743:1
position: 300743
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:300640-300743:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: trnE(TTC)-cp with anticodon TTC; intact chloroplast-like trnE embedded within larger region of chloroplast DNA; possibly functional
so part of: sequence
location: 304824..304896
location: region:304824-304896:1
so has part: feature:304824-304896:1:region

position:304824:1
position: 304824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:304896:1
position: 304896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:304824-304896:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: degenerate chloroplast-like trnY embedded within larger region of chloroplast DNA
pseudo: true
so part of: sequence
location: 304956..305034
location: region:304956-305034:1
so has part: feature:304956-305034:1:region

position:304956:1
position: 304956
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:305034:1
position: 305034
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:304956-305034:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: putative trnC(GCA)-cp with anticodon GCA; intact chloroplast-like trnC embedded within larger region of chloroplast DNA; possibly functional
so part of: sequence
location: complement(307922..307993)
location: region:307922-307993:-1
so has part: feature:307922-307993:-1:region

position:307922:-1
position: 307922
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:307993:-1
position: 307993
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:307922-307993:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: nad9 fragment
so part of: sequence
location: 316360..316428
location: region:316360-316428:1
so has part: feature:316360-316428:1:region

position:316360:1
position: 316360
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:316428:1
position: 316428
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:316360-316428:1:region

CupepM_p11
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: atp6
locus tag: CupepM_p11
so part of: sequence
location: 316481..317260
location: region:316481-317260:1
so has part: feature:316481-317260:1:exon
subclass of: SO_0000010

9072838
type: Gene
SIO_000068: ncbigene

position:316481:1
position: 316481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:317260:1
position: 317260
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:316481-317260:1:exon

CupepM_p11
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3663
gene: atp6
locus tag: CupepM_p11
exception: RNA editing
note: predicted C to U RNA editing creates start codon
codon start: 1
product: ATPase subunit 6
translation: MITPNSPLEQFAILPLIPMNIGNFYFSFTNSSFFMLLTLSLVLLLVYFVTKNGGGNLVPNAWQSLVELIYDFVLNLVNEQIGGLSGSGNVKQKFFPCILVTLTFLLFCNLQGMIPYSFTVTSHFLITLGLSFSLFIGITIVGFQRNGLHFLSFLLPAGVPLPLAPFLVLLELISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNNLFYFIGDLGPLFIVLALTGLELGVAILQAYVFTISICIYLNDATNLHQ
SIO_010081: CupepM_p11
subclass of: SO_0000673
so part of: CupepM_p11
location: 316481..317260
location: region:316481-317260:1
so has part: feature:316481-317260:1:exon

YP_003587353.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:316481-317260:1:exon

CupepM_p11
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: atp6
locus tag: CupepM_p11
note: C to U RNA editing; CCC(P) to UCY(S)
SIO_010081: CupepM_p11
subclass of: SO_0000673
so part of: CupepM_p11
location: 316571
location: region:316571-316571:1
so has part: feature:316571-316571:1:exon

position:316571:1
position: 316571
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:316571-316571:1:exon

CupepM_p11
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: atp6
locus tag: CupepM_p11
note: partial C to U RNA editing; CCC(P) to UCY(S)
SIO_010081: CupepM_p11
subclass of: SO_0000673
so part of: CupepM_p11
location: 316573
location: region:316573-316573:1
so has part: feature:316573-316573:1:exon

position:316573:1
position: 316573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:316573-316573:1:exon

CupepM_p11
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: atp6
locus tag: CupepM_p11
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p11
subclass of: SO_0000673
so part of: CupepM_p11
location: 316650
location: region:316650-316650:1
so has part: feature:316650-316650:1:exon

position:316650:1
position: 316650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:316650-316650:1:exon

CupepM_p11
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: atp6
locus tag: CupepM_p11
note: C to U RNA editing; UCG(S) to UUG(L)
SIO_010081: CupepM_p11
subclass of: SO_0000673
so part of: CupepM_p11
location: 316701
location: region:316701-316701:1
so has part: feature:316701-316701:1:exon

position:316701:1
position: 316701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:316701-316701:1:exon

CupepM_p11
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: atp6
locus tag: CupepM_p11
note: C to U RNA editing; CGC(R) to UGC(C)
SIO_010081: CupepM_p11
subclass of: SO_0000673
so part of: CupepM_p11
location: 316769
location: region:316769-316769:1
so has part: feature:316769-316769:1:exon

position:316769:1
position: 316769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:316769-316769:1:exon

CupepM_p11
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: atp6
locus tag: CupepM_p11
note: C to U RNA editing; UCG(S) to UUG(L)
SIO_010081: CupepM_p11
subclass of: SO_0000673
so part of: CupepM_p11
location: 316776
location: region:316776-316776:1
so has part: feature:316776-316776:1:exon

position:316776:1
position: 316776
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:316776-316776:1:exon

CupepM_p11
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: atp6
locus tag: CupepM_p11
note: C to U RNA editing; UCG(S) to UUG(L)
SIO_010081: CupepM_p11
subclass of: SO_0000673
so part of: CupepM_p11
location: 316794
location: region:316794-316794:1
so has part: feature:316794-316794:1:exon

position:316794:1
position: 316794
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:316794-316794:1:exon

CupepM_p11
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: atp6
locus tag: CupepM_p11
note: C to U RNA editing; CGU(R) to UGU(C)
SIO_010081: CupepM_p11
subclass of: SO_0000673
so part of: CupepM_p11
location: 316802
location: region:316802-316802:1
so has part: feature:316802-316802:1:exon

position:316802:1
position: 316802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:316802-316802:1:exon

CupepM_p11
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: atp6
locus tag: CupepM_p11
note: C to U RNA editing; CCC(P) to CUY(L)
SIO_010081: CupepM_p11
subclass of: SO_0000673
so part of: CupepM_p11
location: 316809
location: region:316809-316809:1
so has part: feature:316809-316809:1:exon

position:316809:1
position: 316809
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:316809-316809:1:exon

CupepM_p11
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: atp6
locus tag: CupepM_p11
note: partial C to U RNA editing; CCC(P) to CUY(L)
SIO_010081: CupepM_p11
subclass of: SO_0000673
so part of: CupepM_p11
location: 316810
location: region:316810-316810:1
so has part: feature:316810-316810:1:exon

position:316810:1
position: 316810
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:316810-316810:1:exon

CupepM_p11
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: atp6
locus tag: CupepM_p11
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p11
subclass of: SO_0000673
so part of: CupepM_p11
location: 316941
location: region:316941-316941:1
so has part: feature:316941-316941:1:exon

position:316941:1
position: 316941
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:316941-316941:1:exon

CupepM_p11
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: atp6
locus tag: CupepM_p11
note: C to U RNA editing; CCU(P) to UCU(S)
SIO_010081: CupepM_p11
subclass of: SO_0000673
so part of: CupepM_p11
location: 317000
location: region:317000-317000:1
so has part: feature:317000-317000:1:exon

position:317000:1
position: 317000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:317000-317000:1:exon

CupepM_p11
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: atp6
locus tag: CupepM_p11
note: C to U RNA editing; CAU(H) to UAU(Y)
SIO_010081: CupepM_p11
subclass of: SO_0000673
so part of: CupepM_p11
location: 317003
location: region:317003-317003:1
so has part: feature:317003-317003:1:exon

position:317003:1
position: 317003
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:317003-317003:1:exon

CupepM_p11
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: atp6
locus tag: CupepM_p11
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p11
subclass of: SO_0000673
so part of: CupepM_p11
location: 317025
location: region:317025-317025:1
so has part: feature:317025-317025:1:exon

position:317025:1
position: 317025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:317025-317025:1:exon

CupepM_p11
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: atp6
locus tag: CupepM_p11
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p11
subclass of: SO_0000673
so part of: CupepM_p11
location: 317067
location: region:317067-317067:1
so has part: feature:317067-317067:1:exon

position:317067:1
position: 317067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:317067-317067:1:exon

CupepM_p11
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: atp6
locus tag: CupepM_p11
note: C to U RNA editing; UCC(S) to UUC(F)
SIO_010081: CupepM_p11
subclass of: SO_0000673
so part of: CupepM_p11
location: 317088
location: region:317088-317088:1
so has part: feature:317088-317088:1:exon

position:317088:1
position: 317088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:317088-317088:1:exon

CupepM_p11
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: atp6
locus tag: CupepM_p11
note: C to U RNA editing; CCU(P) to CUU(L)
SIO_010081: CupepM_p11
subclass of: SO_0000673
so part of: CupepM_p11
location: 317139
location: region:317139-317139:1
so has part: feature:317139-317139:1:exon

position:317139:1
position: 317139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:317139-317139:1:exon

CupepM_p11
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: atp6
locus tag: CupepM_p11
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p11
subclass of: SO_0000673
so part of: CupepM_p11
location: 317196
location: region:317196-317196:1
so has part: feature:317196-317196:1:exon

position:317196:1
position: 317196
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:317196-317196:1:exon

CupepM_p11
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: atp6
locus tag: CupepM_p11
note: C to U RNA editing; CAU(H) to UAU(Y)
SIO_010081: CupepM_p11
subclass of: SO_0000673
so part of: CupepM_p11
location: 317204
location: region:317204-317204:1
so has part: feature:317204-317204:1:exon

position:317204:1
position: 317204
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:317204-317204:1:exon

CupepM_p11
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: atp6
locus tag: CupepM_p11
note: C to U RNA editing; UCU(S) to UUU(F)
SIO_010081: CupepM_p11
subclass of: SO_0000673
so part of: CupepM_p11
location: 317211
location: region:317211-317211:1
so has part: feature:317211-317211:1:exon

position:317211:1
position: 317211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:317211-317211:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: rps19 fragment
so part of: sequence
location: 355783..355836
location: region:355783-355836:1
so has part: feature:355783-355836:1:region

position:355783:1
position: 355783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:355836:1
position: 355836
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:355783-355836:1:region

CupepM_p02
type: Exon
subclass of: SO_0000147
RO_0002162: 3663
gene: nad5
locus tag: CupepM_p02
number: 4
SIO_010081: CupepM_p02
subclass of: SO_0000673
so part of: CupepM_p02
location: 356747..357141
location: region:356747-357141:1
so has part: feature:356747-357141:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:356747-357141:1:exon

CupepM_p02
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad5
locus tag: CupepM_p02
note: C to U RNA editing; CCC(P) to CUC(L)
SIO_010081: CupepM_p02
subclass of: SO_0000673
so part of: CupepM_p02
location: 356768
location: region:356768-356768:1
so has part: feature:356768-356768:1:exon

position:356768:1
position: 356768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:356768-356768:1:exon

CupepM_p02
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad5
locus tag: CupepM_p02
note: C to U RNA editing; ACC(T) to AUC(I)
SIO_010081: CupepM_p02
subclass of: SO_0000673
so part of: CupepM_p02
location: 356828
location: region:356828-356828:1
so has part: feature:356828-356828:1:exon

position:356828:1
position: 356828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:356828-356828:1:exon

CupepM_p02
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad5
locus tag: CupepM_p02
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p02
subclass of: SO_0000673
so part of: CupepM_p02
location: 356858
location: region:356858-356858:1
so has part: feature:356858-356858:1:exon

position:356858:1
position: 356858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:356858-356858:1:exon

CupepM_p02
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad5
locus tag: CupepM_p02
note: C to U RNA editing; UCU(S) to UUU(F)
SIO_010081: CupepM_p02
subclass of: SO_0000673
so part of: CupepM_p02
location: 356867
location: region:356867-356867:1
so has part: feature:356867-356867:1:exon

position:356867:1
position: 356867
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:356867-356867:1:exon

CupepM_p02
type: Intron
subclass of: SO_0000188
RO_0002162: 3663
gene: nad5
locus tag: CupepM_p02
note: cis-spliced intron
number: 4
SIO_010081: CupepM_p02
subclass of: SO_0000673
so part of: CupepM_p02
location: 357142..358231
location: region:357142-358231:1
so has part: feature:357142-358231:1:exon

position:357142:1
position: 357142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:358231:1
position: 358231
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:357142-358231:1:exon

CupepM_p02
type: Exon
subclass of: SO_0000147
RO_0002162: 3663
gene: nad5
locus tag: CupepM_p02
number: 5
SIO_010081: CupepM_p02
subclass of: SO_0000673
so part of: CupepM_p02
location: 358232..358363
location: region:358232-358363:1
so has part: feature:358232-358363:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:358232-358363:1:exon

CupepM_p02
type: Exon
subclass of: SO_0000147
RO_0002162: 3663
gene: nad5
locus tag: CupepM_p02
number: 2
SIO_010081: CupepM_p02
subclass of: SO_0000673
so part of: CupepM_p02
location: complement(391836..393051)
location: region:391836-393051:-1
so has part: feature:391836-393051:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:391836-393051:-1:exon

CupepM_p02
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad5
locus tag: CupepM_p02
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p02
subclass of: SO_0000673
so part of: CupepM_p02
location: complement(391972)
location: region:391972-391972:-1
so has part: feature:391972-391972:-1:exon

position:391972:-1
position: 391972
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:391972-391972:-1:exon

CupepM_p02
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad5
locus tag: CupepM_p02
note: C to U RNA editing; ACG(T) to AUG(M)
SIO_010081: CupepM_p02
subclass of: SO_0000673
so part of: CupepM_p02
location: complement(392407)
location: region:392407-392407:-1
so has part: feature:392407-392407:-1:exon

position:392407:-1
position: 392407
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:392407-392407:-1:exon

CupepM_p02
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad5
locus tag: CupepM_p02
note: C to U RNA editing; UCU(S) to UUU(F)
SIO_010081: CupepM_p02
subclass of: SO_0000673
so part of: CupepM_p02
location: complement(392419)
location: region:392419-392419:-1
so has part: feature:392419-392419:-1:exon

position:392419:-1
position: 392419
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:392419-392419:-1:exon

CupepM_p02
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad5
locus tag: CupepM_p02
note: C to U RNA editing; CCA(P) to UCA(S)
SIO_010081: CupepM_p02
subclass of: SO_0000673
so part of: CupepM_p02
location: complement(392447)
location: region:392447-392447:-1
so has part: feature:392447-392447:-1:exon

position:392447:-1
position: 392447
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:392447-392447:-1:exon

CupepM_p02
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad5
locus tag: CupepM_p02
note: C to U RNA editing; UCG(S) to UUG(L)
SIO_010081: CupepM_p02
subclass of: SO_0000673
so part of: CupepM_p02
location: complement(392518)
location: region:392518-392518:-1
so has part: feature:392518-392518:-1:exon

position:392518:-1
position: 392518
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:392518-392518:-1:exon

CupepM_p02
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad5
locus tag: CupepM_p02
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p02
subclass of: SO_0000673
so part of: CupepM_p02
location: complement(392557)
location: region:392557-392557:-1
so has part: feature:392557-392557:-1:exon

position:392557:-1
position: 392557
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:392557-392557:-1:exon

CupepM_p02
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad5
locus tag: CupepM_p02
note: C to U RNA editing; UCG(S) to UUG(L)
SIO_010081: CupepM_p02
subclass of: SO_0000673
so part of: CupepM_p02
location: complement(392569)
location: region:392569-392569:-1
so has part: feature:392569-392569:-1:exon

position:392569:-1
position: 392569
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:392569-392569:-1:exon

CupepM_p02
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad5
locus tag: CupepM_p02
note: C to U RNA editing; CUU(L) to UUU(F)
SIO_010081: CupepM_p02
subclass of: SO_0000673
so part of: CupepM_p02
location: complement(392606)
location: region:392606-392606:-1
so has part: feature:392606-392606:-1:exon

position:392606:-1
position: 392606
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:392606-392606:-1:exon

CupepM_p02
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad5
locus tag: CupepM_p02
note: C to U RNA editing; UCU(S) to UUU(F)
SIO_010081: CupepM_p02
subclass of: SO_0000673
so part of: CupepM_p02
location: complement(392653)
location: region:392653-392653:-1
so has part: feature:392653-392653:-1:exon

position:392653:-1
position: 392653
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:392653-392653:-1:exon

CupepM_p02
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad5
locus tag: CupepM_p02
note: C to U RNA editing; GCC(A) to GUC(V)
SIO_010081: CupepM_p02
subclass of: SO_0000673
so part of: CupepM_p02
location: complement(392674)
location: region:392674-392674:-1
so has part: feature:392674-392674:-1:exon

position:392674:-1
position: 392674
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:392674-392674:-1:exon

CupepM_p02
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad5
locus tag: CupepM_p02
note: C to U RNA editing; CGU(R) to UGU(C)
SIO_010081: CupepM_p02
subclass of: SO_0000673
so part of: CupepM_p02
location: complement(392684)
location: region:392684-392684:-1
so has part: feature:392684-392684:-1:exon

position:392684:-1
position: 392684
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:392684-392684:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: C to U RNA editing; CGU(R) to UGU(C)
so part of: sequence
location: 392729
location: region:392729-392729:1
so has part: feature:392729-392729:1:region

position:392729:1
position: 392729
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:392729-392729:1:region

CupepM_p02
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad5
locus tag: CupepM_p02
note: C to U RNA editing; UCG(S) to UUG(L)
SIO_010081: CupepM_p02
subclass of: SO_0000673
so part of: CupepM_p02
location: complement(392734)
location: region:392734-392734:-1
so has part: feature:392734-392734:-1:exon

position:392734:-1
position: 392734
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:392734-392734:-1:exon

CupepM_p02
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad5
locus tag: CupepM_p02
note: C to U RNA editing; CCU(P) to CUU(L)
SIO_010081: CupepM_p02
subclass of: SO_0000673
so part of: CupepM_p02
location: complement(392743)
location: region:392743-392743:-1
so has part: feature:392743-392743:-1:exon

position:392743:-1
position: 392743
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:392743-392743:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: C to U RNA editing; CCU(P) to CUU(L)
so part of: sequence
location: 392776
location: region:392776-392776:1
so has part: feature:392776-392776:1:region

position:392776:1
position: 392776
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:392776-392776:1:region

CupepM_p02
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad5
locus tag: CupepM_p02
note: C to U RNA editing; UCU(S) to UUU(F)
SIO_010081: CupepM_p02
subclass of: SO_0000673
so part of: CupepM_p02
location: complement(392884)
location: region:392884-392884:-1
so has part: feature:392884-392884:-1:exon

position:392884:-1
position: 392884
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:392884-392884:-1:exon

CupepM_p02
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad5
locus tag: CupepM_p02
note: C to U RNA editing; CCA(P) to CUA(L)
SIO_010081: CupepM_p02
subclass of: SO_0000673
so part of: CupepM_p02
location: complement(392908)
location: region:392908-392908:-1
so has part: feature:392908-392908:-1:exon

position:392908:-1
position: 392908
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:392908-392908:-1:exon

CupepM_p02
type: Intron
subclass of: SO_0000188
RO_0002162: 3663
gene: nad5
locus tag: CupepM_p02
note: cis-spliced intron
number: 1
SIO_010081: CupepM_p02
subclass of: SO_0000673
so part of: CupepM_p02
location: complement(393052..393871)
location: region:393052-393871:-1
so has part: feature:393052-393871:-1:exon

position:393052:-1
position: 393052
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:393871:-1
position: 393871
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:393052-393871:-1:exon

CupepM_p02
type: Exon
subclass of: SO_0000147
RO_0002162: 3663
gene: nad5
locus tag: CupepM_p02
number: 1
SIO_010081: CupepM_p02
subclass of: SO_0000673
so part of: CupepM_p02
location: complement(393872..394101)
location: region:393872-394101:-1
so has part: feature:393872-394101:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:393872-394101:-1:exon

CupepM_p12
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: atp9
locus tag: CupepM_p12
so part of: sequence
location: complement(394397..394621)
location: region:394397-394621:-1
so has part: feature:394397-394621:-1:exon
subclass of: SO_0000010

9072819
type: Gene
SIO_000068: ncbigene

position:394397:-1
position: 394397
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:394621:-1
position: 394621
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:394397-394621:-1:exon

CupepM_p12
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3663
gene: atp9
locus tag: CupepM_p12
exception: RNA editing
codon start: 1
product: ATPase subunit 9
translation: MLEGAKLMGAGAATIALAGAAVGIGNVFSSLIHSVARNPSLAKQLFGYAILGFALTEAIALFALMMAFLILFVF
SIO_010081: CupepM_p12
subclass of: SO_0000673
so part of: CupepM_p12
location: complement(394397..394621)
location: region:394397-394621:-1
so has part: feature:394397-394621:-1:exon

YP_003587354.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:394397-394621:-1:exon

CupepM_p12
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: atp9
locus tag: CupepM_p12
note: C to U RNA editing; CGA(R) to UGA(TERM)
SIO_010081: CupepM_p12
subclass of: SO_0000673
so part of: CupepM_p12
location: complement(394399)
location: region:394399-394399:-1
so has part: feature:394399-394399:-1:exon

position:394399:-1
position: 394399
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:394399-394399:-1:exon

CupepM_p12
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: atp9
locus tag: CupepM_p12
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p12
subclass of: SO_0000673
so part of: CupepM_p12
location: complement(394410)
location: region:394410-394410:-1
so has part: feature:394410-394410:-1:exon

position:394410:-1
position: 394410
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:394410-394410:-1:exon

CupepM_p12
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: atp9
locus tag: CupepM_p12
note: C to U RNA editing; CCA(P) to CUA(L)
SIO_010081: CupepM_p12
subclass of: SO_0000673
so part of: CupepM_p12
location: complement(394431)
location: region:394431-394431:-1
so has part: feature:394431-394431:-1:exon

position:394431:-1
position: 394431
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:394431-394431:-1:exon

CupepM_p12
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: atp9
locus tag: CupepM_p12
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p12
subclass of: SO_0000673
so part of: CupepM_p12
location: complement(394488)
location: region:394488-394488:-1
so has part: feature:394488-394488:-1:exon

position:394488:-1
position: 394488
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:394488-394488:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: C to U RNA editing; UCA(S) to UUA(L)
so part of: sequence
location: 394572
location: region:394572-394572:1
so has part: feature:394572-394572:1:region

position:394572:1
position: 394572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:394572-394572:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: C to U RNA editing; UCA(S) to UUA(L)
so part of: sequence
location: 394602
location: region:394602-394602:1
so has part: feature:394602-394602:1:region

position:394602:1
position: 394602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:394602-394602:1:region

CupepM_p13
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: atp1
locus tag: CupepM_p13
so part of: sequence
location: 414998..416527
location: region:414998-416527:1
so has part: feature:414998-416527:1:exon
subclass of: SO_0000010

9072821
type: Gene
SIO_000068: ncbigene

position:414998:1
position: 414998
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:416527:1
position: 416527
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:414998-416527:1:exon

CupepM_p13
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3663
gene: atp1
locus tag: CupepM_p13
exception: RNA editing
codon start: 1
product: ATPase subunit 1
translation: MKFSPGAAELTTLLESRITNFYTHLKVDEIGRVVSVGDGIARVYGLKEIQAGEMVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDALGVPIDGRGALSDHERRRVEVKAPGIISRKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAQLVQILSSGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAFPGDVFYLHSRLLERAAKRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFCDRMPLDRISQYERAIPSRIKPELLQSLFSKGGLTNERKMEPDAFLKESALPYL
SIO_010081: CupepM_p13
subclass of: SO_0000673
so part of: CupepM_p13
location: 414998..416527
location: region:414998-416527:1
so has part: feature:414998-416527:1:exon

YP_003587355.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:414998-416527:1:exon

CupepM_p13
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: atp1
locus tag: CupepM_p13
note: C to U RNA editing; CCU(P) to UCU(S)
SIO_010081: CupepM_p13
subclass of: SO_0000673
so part of: CupepM_p13
location: 416036
location: region:416036-416036:1
so has part: feature:416036-416036:1:exon

position:416036:1
position: 416036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:416036-416036:1:exon

CupepM_p13
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: atp1
locus tag: CupepM_p13
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p13
subclass of: SO_0000673
so part of: CupepM_p13
location: 416175
location: region:416175-416175:1
so has part: feature:416175-416175:1:exon

position:416175:1
position: 416175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:416175-416175:1:exon

CupepM_p13
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: atp1
locus tag: CupepM_p13
note: C to U RNA editing; CCG(P) to CUG(L)
SIO_010081: CupepM_p13
subclass of: SO_0000673
so part of: CupepM_p13
location: 416289
location: region:416289-416289:1
so has part: feature:416289-416289:1:exon

position:416289:1
position: 416289
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:416289-416289:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: similar to chloroplast LSC region from rps8-rps14 spacer to rpoA
so part of: sequence
location: 434542..436721
location: region:434542-436721:1
so has part: feature:434542-436721:1:region

position:434542:1
position: 434542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:436721:1
position: 436721
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:434542-436721:1:region

CupepM_p14
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: ccmFn
locus tag: CupepM_p14
so part of: sequence
location: complement(441135..442868)
location: region:441135-442868:-1
so has part: feature:441135-442868:-1:exon
subclass of: SO_0000010

9072817
type: Gene
SIO_000068: ncbigene

position:441135:-1
position: 441135
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:442868:-1
position: 442868
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:441135-442868:-1:exon

CupepM_p14
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3663
gene: ccmFn
locus tag: CupepM_p14
exception: RNA editing
codon start: 1
product: cytochrome c biogenesis FN
translation: MSIYELFHYSLFLGLFVAFTYNKKEPPAFGAALAFWCILLSFFGLLFCHISNNLSNFNVLTANAPFFYQISGTWSNHEGSILLWCWILSVYGFLLCYRGRPQSHNVSKRGGHRETLFYSFLLNFVKNPIRDLPRYDQKSGSAPPLCTPFVLRTLVDSELRWRRNRTFDGPALFYAPLYLESQMSFAPLGSRRSRGSREVKRTHPLLHLARDDKERASSIDEQRIDRTLGIALFFSPFLSASSDPFVRNFFVRTEPLAESNPVSQDPISAIHPPCIYAGDVASAMGFGLCRSKMMNGIVALHSPPMRKDAPEKNGTLLCSAGCVGSRIRSELFTLKFKDVGAKCYPALLVRSNRSLLMLLRRRFFAFSSLWSGGLVDTGRELAKRVVRNAKKETTTSLLSWTAGANTVVSDQDQEPIRIWILICWCFLTVGILLGSWWAYHELGWGGWWFWDPVENASFMPWVLATACIHSVILPIFYFWTLFLNIVTFLCCVLGTFSIRSGLLASVHSFATDDTRGRFLWWFFLLMTGISMILFYQMKQQASVRRTYQKEMVVARSTLVHLRHSARAQPRPLMLWKN
SIO_010081: CupepM_p14
subclass of: SO_0000673
so part of: CupepM_p14
location: complement(441135..442868)
location: region:441135-442868:-1
so has part: feature:441135-442868:-1:exon

YP_003587356.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:441135-442868:-1:exon

CupepM_p14
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmFn
locus tag: CupepM_p14
note: C to U RNA editing; CCC(P) to UCC(S)
SIO_010081: CupepM_p14
subclass of: SO_0000673
so part of: CupepM_p14
location: complement(441356)
location: region:441356-441356:-1
so has part: feature:441356-441356:-1:exon

position:441356:-1
position: 441356
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:441356-441356:-1:exon

CupepM_p14
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmFn
locus tag: CupepM_p14
note: partial C to U RNA editing; UCA(S) to UYA(S/L)
SIO_010081: CupepM_p14
subclass of: SO_0000673
so part of: CupepM_p14
location: complement(441391)
location: region:441391-441391:-1
so has part: feature:441391-441391:-1:exon

position:441391:-1
position: 441391
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:441391-441391:-1:exon

CupepM_p14
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmFn
locus tag: CupepM_p14
note: partial C to U RNA editing; CCA(P) to CYA(P/L)
SIO_010081: CupepM_p14
subclass of: SO_0000673
so part of: CupepM_p14
location: complement(441403)
location: region:441403-441403:-1
so has part: feature:441403-441403:-1:exon

position:441403:-1
position: 441403
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:441403-441403:-1:exon

CupepM_p14
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmFn
locus tag: CupepM_p14
note: partial C to U RNA editing; UCG(S) to UYG(S/L)
SIO_010081: CupepM_p14
subclass of: SO_0000673
so part of: CupepM_p14
location: complement(441427)
location: region:441427-441427:-1
so has part: feature:441427-441427:-1:exon

position:441427:-1
position: 441427
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:441427-441427:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: partial C to U RNA editing; ACC(T) to ACY(T)
so part of: sequence
location: 441429
location: region:441429-441429:1
so has part: feature:441429-441429:1:region

position:441429:1
position: 441429
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:441429-441429:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: partial C to U RNA editing; UCU(S) to UYU(S/F)
so part of: sequence
location: 441436
location: region:441436-441436:1
so has part: feature:441436-441436:1:region

position:441436:1
position: 441436
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:441436-441436:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: partial C to U RNA editing; CAU(H) to YAU(H/Y)
so part of: sequence
location: 441440
location: region:441440-441440:1
so has part: feature:441440-441440:1:region

position:441440:1
position: 441440
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:441440-441440:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: partial C to U RNA editing; CUU(L) to YUU(L/F)
so part of: sequence
location: 441443
location: region:441443-441443:1
so has part: feature:441443-441443:1:region

position:441443:1
position: 441443
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:441443-441443:1:region

CupepM_p14
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmFn
locus tag: CupepM_p14
note: C to U RNA editing; CGU(R) to UGU(C)
SIO_010081: CupepM_p14
subclass of: SO_0000673
so part of: CupepM_p14
location: complement(441470)
location: region:441470-441470:-1
so has part: feature:441470-441470:-1:exon

position:441470:-1
position: 441470
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:441470-441470:-1:exon

CupepM_p14
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmFn
locus tag: CupepM_p14
note: C to U RNA editing; CGG(R) to UGG(W)
SIO_010081: CupepM_p14
subclass of: SO_0000673
so part of: CupepM_p14
location: complement(441488)
location: region:441488-441488:-1
so has part: feature:441488-441488:-1:exon

position:441488:-1
position: 441488
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:441488-441488:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: C to U RNA editing; CGG(R) to UGG(W)
so part of: sequence
location: 441521
location: region:441521-441521:1
so has part: feature:441521-441521:1:region

position:441521:1
position: 441521
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:441521-441521:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: C to U RNA editing; CGG(R) to UGG(W)
so part of: sequence
location: 441539
location: region:441539-441539:1
so has part: feature:441539-441539:1:region

position:441539:1
position: 441539
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:441539-441539:1:region

CupepM_p14
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmFn
locus tag: CupepM_p14
note: C to U RNA editing; CAU(H) to UAU(Y)
SIO_010081: CupepM_p14
subclass of: SO_0000673
so part of: CupepM_p14
location: complement(441554)
location: region:441554-441554:-1
so has part: feature:441554-441554:-1:exon

position:441554:-1
position: 441554
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:441554-441554:-1:exon

CupepM_p14
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmFn
locus tag: CupepM_p14
note: C to U RNA editing; CCA(P) to CUA(L)
SIO_010081: CupepM_p14
subclass of: SO_0000673
so part of: CupepM_p14
location: complement(441571)
location: region:441571-441571:-1
so has part: feature:441571-441571:-1:exon

position:441571:-1
position: 441571
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:441571-441571:-1:exon

CupepM_p14
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmFn
locus tag: CupepM_p14
note: C to U RNA editing; CGG(R) to UGG(W)
SIO_010081: CupepM_p14
subclass of: SO_0000673
so part of: CupepM_p14
location: complement(441599)
location: region:441599-441599:-1
so has part: feature:441599-441599:-1:exon

position:441599:-1
position: 441599
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:441599-441599:-1:exon

CupepM_p14
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmFn
locus tag: CupepM_p14
note: C to U RNA editing; CGC(R) to UGC(C)
SIO_010081: CupepM_p14
subclass of: SO_0000673
so part of: CupepM_p14
location: complement(441917)
location: region:441917-441917:-1
so has part: feature:441917-441917:-1:exon

position:441917:-1
position: 441917
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:441917-441917:-1:exon

CupepM_p14
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmFn
locus tag: CupepM_p14
note: partial C to U RNA editing; CCU(P) to CYU(P/L)
SIO_010081: CupepM_p14
subclass of: SO_0000673
so part of: CupepM_p14
location: complement(442333)
location: region:442333-442333:-1
so has part: feature:442333-442333:-1:exon

position:442333:-1
position: 442333
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:442333-442333:-1:exon

CupepM_p14
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmFn
locus tag: CupepM_p14
note: partial C to U RNA editing; UUC(F) to UUY(F)
SIO_010081: CupepM_p14
subclass of: SO_0000673
so part of: CupepM_p14
location: complement(442497)
location: region:442497-442497:-1
so has part: feature:442497-442497:-1:exon

position:442497:-1
position: 442497
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:442497-442497:-1:exon

CupepM_p14
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmFn
locus tag: CupepM_p14
note: C to U RNA editing; UCG(S) to UUG(L)
SIO_010081: CupepM_p14
subclass of: SO_0000673
so part of: CupepM_p14
location: complement(442504)
location: region:442504-442504:-1
so has part: feature:442504-442504:-1:exon

position:442504:-1
position: 442504
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:442504-442504:-1:exon

CupepM_p14
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmFn
locus tag: CupepM_p14
note: C to U RNA editing; CCA(P) to CUA(L)
SIO_010081: CupepM_p14
subclass of: SO_0000673
so part of: CupepM_p14
location: complement(442606)
location: region:442606-442606:-1
so has part: feature:442606-442606:-1:exon

position:442606:-1
position: 442606
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:442606-442606:-1:exon

CupepM_p14
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmFn
locus tag: CupepM_p14
note: C to U RNA editing; CGG(R) to UGG(W)
SIO_010081: CupepM_p14
subclass of: SO_0000673
so part of: CupepM_p14
location: complement(442613)
location: region:442613-442613:-1
so has part: feature:442613-442613:-1:exon

position:442613:-1
position: 442613
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:442613-442613:-1:exon

CupepM_p14
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmFn
locus tag: CupepM_p14
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p14
subclass of: SO_0000673
so part of: CupepM_p14
location: complement(442621)
location: region:442621-442621:-1
so has part: feature:442621-442621:-1:exon

position:442621:-1
position: 442621
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:442621-442621:-1:exon

CupepM_p14
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmFn
locus tag: CupepM_p14
note: partial C to U RNA editing; ACC(T) to ACY(T)
SIO_010081: CupepM_p14
subclass of: SO_0000673
so part of: CupepM_p14
location: complement(442686)
location: region:442686-442686:-1
so has part: feature:442686-442686:-1:exon

position:442686:-1
position: 442686
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:442686-442686:-1:exon

CupepM_p14
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmFn
locus tag: CupepM_p14
note: partial C to U RNA editing; UCC(S) to UYY(S/F)
SIO_010081: CupepM_p14
subclass of: SO_0000673
so part of: CupepM_p14
location: complement(442698)
location: region:442698-442698:-1
so has part: feature:442698-442698:-1:exon

position:442698:-1
position: 442698
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:442698-442698:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: partial C to U RNA editing; UCC(S) to UYY(S/F)
so part of: sequence
location: 442699
location: region:442699-442699:1
so has part: feature:442699-442699:1:region

position:442699:1
position: 442699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:442699-442699:1:region

CupepM_p14
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmFn
locus tag: CupepM_p14
note: C to U RNA editing; CCU(P) to UCU(S)
SIO_010081: CupepM_p14
subclass of: SO_0000673
so part of: CupepM_p14
location: complement(442718)
location: region:442718-442718:-1
so has part: feature:442718-442718:-1:exon

position:442718:-1
position: 442718
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:442718-442718:-1:exon

CupepM_p14
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmFn
locus tag: CupepM_p14
note: C to U RNA editing; CGU(R) to UGU(C)
SIO_010081: CupepM_p14
subclass of: SO_0000673
so part of: CupepM_p14
location: complement(442727)
location: region:442727-442727:-1
so has part: feature:442727-442727:-1:exon

position:442727:-1
position: 442727
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:442727-442727:-1:exon

CupepM_p14
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmFn
locus tag: CupepM_p14
note: C to U RNA editing; UCG(S) to UUG(L)
SIO_010081: CupepM_p14
subclass of: SO_0000673
so part of: CupepM_p14
location: complement(442732)
location: region:442732-442732:-1
so has part: feature:442732-442732:-1:exon

position:442732:-1
position: 442732
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:442732-442732:-1:exon

CupepM_p14
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmFn
locus tag: CupepM_p14
note: C to U RNA editing; CCU(P) to CUU(L)
SIO_010081: CupepM_p14
subclass of: SO_0000673
so part of: CupepM_p14
location: complement(442771)
location: region:442771-442771:-1
so has part: feature:442771-442771:-1:exon

position:442771:-1
position: 442771
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:442771-442771:-1:exon

CupepM_p14
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmFn
locus tag: CupepM_p14
note: partial C to U RNA editing; CCC(P) to CUY(L)
SIO_010081: CupepM_p14
subclass of: SO_0000673
so part of: CupepM_p14
location: complement(442830)
location: region:442830-442830:-1
so has part: feature:442830-442830:-1:exon

position:442830:-1
position: 442830
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:442830-442830:-1:exon

CupepM_p14
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmFn
locus tag: CupepM_p14
note: C to U RNA editing; CCC(P) to CUY(L)
SIO_010081: CupepM_p14
subclass of: SO_0000673
so part of: CupepM_p14
location: complement(442831)
location: region:442831-442831:-1
so has part: feature:442831-442831:-1:exon

position:442831:-1
position: 442831
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:442831-442831:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: similar to chloroplast ndhB intron (IR)
so part of: sequence
location: 450412..450573
location: region:450412-450573:1
so has part: feature:450412-450573:1:region

position:450412:1
position: 450412
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:450573:1
position: 450573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:450412-450573:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: similar to chloroplast LSC region from trnT-psbD spacer to psbC-trnS spacer
so part of: sequence
location: 454200..457098
location: region:454200-457098:1
so has part: feature:454200-457098:1:region

position:454200:1
position: 454200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:457098:1
position: 457098
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:454200-457098:1:region

CupepM_p15
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: nad4L
locus tag: CupepM_p15
so part of: sequence
location: 470643..470945
location: region:470643-470945:1
so has part: feature:470643-470945:1:exon
subclass of: SO_0000010

9072825
type: Gene
SIO_000068: ncbigene

position:470643:1
position: 470643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:470945:1
position: 470945
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:470643-470945:1:exon

CupepM_p15
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3663
gene: nad4L
locus tag: CupepM_p15
exception: RNA editing
codon start: 1
product: NADH dehydrogenase subunit 4L
translation: MDPIKYFTFSMIIFILGIWGILLNRRNILIMLMSMELMLLAVNLNFLVFSVSLDDMMGQLFALLVLTVAAAESAIGLAIFVMTFRVRGTIAVEFINSIQG
SIO_010081: CupepM_p15
subclass of: SO_0000673
so part of: CupepM_p15
location: 470643..470945
location: region:470643-470945:1
so has part: feature:470643-470945:1:exon

YP_003587357.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:470643-470945:1:exon

CupepM_p15
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4L
locus tag: CupepM_p15
note: C to U RNA editing; ACG(T) to AUG(M)
SIO_010081: CupepM_p15
subclass of: SO_0000673
so part of: CupepM_p15
location: 470644
location: region:470644-470644:1
so has part: feature:470644-470644:1:exon

position:470644:1
position: 470644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:470644-470644:1:exon

CupepM_p15
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4L
locus tag: CupepM_p15
note: C to U RNA editing; AUC(I) to AUU(I)
SIO_010081: CupepM_p15
subclass of: SO_0000673
so part of: CupepM_p15
location: 470678
location: region:470678-470678:1
so has part: feature:470678-470678:1:exon

position:470678:1
position: 470678
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:470678-470678:1:exon

CupepM_p15
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4L
locus tag: CupepM_p15
note: C to U RNA editing; UCU(S) to UUU(F)
SIO_010081: CupepM_p15
subclass of: SO_0000673
so part of: CupepM_p15
location: 470683
location: region:470683-470683:1
so has part: feature:470683-470683:1:exon

position:470683:1
position: 470683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:470683-470683:1:exon

CupepM_p15
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4L
locus tag: CupepM_p15
note: C to U RNA editing; CGG(R) to UGG(W)
SIO_010081: CupepM_p15
subclass of: SO_0000673
so part of: CupepM_p15
location: 470697
location: region:470697-470697:1
so has part: feature:470697-470697:1:exon

position:470697:1
position: 470697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:470697-470697:1:exon

CupepM_p15
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4L
locus tag: CupepM_p15
note: C to U RNA editing; CCU(P) to CUU(L)
SIO_010081: CupepM_p15
subclass of: SO_0000673
so part of: CupepM_p15
location: 470728
location: region:470728-470728:1
so has part: feature:470728-470728:1:exon

position:470728:1
position: 470728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:470728-470728:1:exon

CupepM_p15
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4L
locus tag: CupepM_p15
note: partial C to U RNA editing; UCA(S) to UYA(S/L)
SIO_010081: CupepM_p15
subclass of: SO_0000673
so part of: CupepM_p15
location: 470737
location: region:470737-470737:1
so has part: feature:470737-470737:1:exon

position:470737:1
position: 470737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:470737-470737:1:exon

CupepM_p15
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4L
locus tag: CupepM_p15
note: C to U RNA editing; CCA(P) to UCA(S)
SIO_010081: CupepM_p15
subclass of: SO_0000673
so part of: CupepM_p15
location: 470742
location: region:470742-470742:1
so has part: feature:470742-470742:1:exon

position:470742:1
position: 470742
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:470742-470742:1:exon

CupepM_p15
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4L
locus tag: CupepM_p15
note: partial C to U RNA editing; UCA(S) to UYA(S/L)
SIO_010081: CupepM_p15
subclass of: SO_0000673
so part of: CupepM_p15
location: 470752
location: region:470752-470752:1
so has part: feature:470752-470752:1:exon

position:470752:1
position: 470752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:470752-470752:1:exon

CupepM_p15
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4L
locus tag: CupepM_p15
note: C to U RNA editing; UCG(S) to UUG(L)
SIO_010081: CupepM_p15
subclass of: SO_0000673
so part of: CupepM_p15
location: 470773
location: region:470773-470773:1
so has part: feature:470773-470773:1:exon

position:470773:1
position: 470773
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:470773-470773:1:exon

CupepM_p15
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4L
locus tag: CupepM_p15
note: C to U RNA editing; UCG(S) to UUG(L)
SIO_010081: CupepM_p15
subclass of: SO_0000673
so part of: CupepM_p15
location: 470800
location: region:470800-470800:1
so has part: feature:470800-470800:1:exon

position:470800:1
position: 470800
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:470800-470800:1:exon

CupepM_p15
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4L
locus tag: CupepM_p15
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p15
subclass of: SO_0000673
so part of: CupepM_p15
location: 470821
location: region:470821-470821:1
so has part: feature:470821-470821:1:exon

position:470821:1
position: 470821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:470821-470821:1:exon

CupepM_p15
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4L
locus tag: CupepM_p15
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p15
subclass of: SO_0000673
so part of: CupepM_p15
location: 470830
location: region:470830-470830:1
so has part: feature:470830-470830:1:exon

position:470830:1
position: 470830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:470830-470830:1:exon

CupepM_p15
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad4L
locus tag: CupepM_p15
note: C to U RNA editing; CCA(P) to CUA(L)
SIO_010081: CupepM_p15
subclass of: SO_0000673
so part of: CupepM_p15
location: 470839
location: region:470839-470839:1
so has part: feature:470839-470839:1:exon

position:470839:1
position: 470839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:470839-470839:1:exon

CupepM_p16
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: atp4
locus tag: CupepM_p16
so part of: sequence
location: 471138..471713
location: region:471138-471713:1
so has part: feature:471138-471713:1:exon
subclass of: SO_0000010

9072835
type: Gene
SIO_000068: ncbigene

position:471138:1
position: 471138
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:471713:1
position: 471713
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:471138-471713:1:exon

CupepM_p16
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3663
gene: atp4
locus tag: CupepM_p16
exception: RNA editing
codon start: 1
product: ATPase subunit 4
translation: MRWSSTNMRAIKMLFAAILFIGALSSKKILIYNEEMIVACCFIGFIIFSRQSLGKTFKATFDGRIQAIQDELQQFLNPNEVVLLESNEQQRLLRISLRICGTVIESLPMARYAPKCEKTVQALVCRNLNVKLATLLNAIDSRRIRLQDDLVTGFHFSVSERFVPGCTLKASIVELIREGLVVLRKVRGVLS
SIO_010081: CupepM_p16
subclass of: SO_0000673
so part of: CupepM_p16
location: 471138..471713
location: region:471138-471713:1
so has part: feature:471138-471713:1:exon

YP_003587358.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:471138-471713:1:exon

CupepM_p16
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: atp4
locus tag: CupepM_p16
note: C to U RNA editing; UCU(S) to UUU(F)
SIO_010081: CupepM_p16
subclass of: SO_0000673
so part of: CupepM_p16
location: 471196
location: region:471196-471196:1
so has part: feature:471196-471196:1:exon

position:471196:1
position: 471196
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:471196-471196:1:exon

CupepM_p16
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: atp4
locus tag: CupepM_p16
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p16
subclass of: SO_0000673
so part of: CupepM_p16
location: 471226
location: region:471226-471226:1
so has part: feature:471226-471226:1:exon

position:471226:1
position: 471226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:471226-471226:1:exon

CupepM_p16
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: atp4
locus tag: CupepM_p16
note: C to U RNA editing; CUC(L) to UUC(F)
SIO_010081: CupepM_p16
subclass of: SO_0000673
so part of: CupepM_p16
location: 471318
location: region:471318-471318:1
so has part: feature:471318-471318:1:exon

position:471318:1
position: 471318
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:471318-471318:1:exon

CupepM_p16
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: atp4
locus tag: CupepM_p16
note: C to U RNA editing; UCG(S) to UUG(L)
SIO_010081: CupepM_p16
subclass of: SO_0000673
so part of: CupepM_p16
location: 471352
location: region:471352-471352:1
so has part: feature:471352-471352:1:exon

position:471352:1
position: 471352
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:471352-471352:1:exon

CupepM_p16
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: atp4
locus tag: CupepM_p16
note: C to U RNA editing; CCC(P) to CUC(L)
SIO_010081: CupepM_p16
subclass of: SO_0000673
so part of: CupepM_p16
location: 471364
location: region:471364-471364:1
so has part: feature:471364-471364:1:exon

position:471364:1
position: 471364
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:471364-471364:1:exon

CupepM_p16
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: atp4
locus tag: CupepM_p16
note: C to U RNA editing; CCU(P) to CUU(L)
SIO_010081: CupepM_p16
subclass of: SO_0000673
so part of: CupepM_p16
location: 471385
location: region:471385-471385:1
so has part: feature:471385-471385:1:exon

position:471385:1
position: 471385
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:471385-471385:1:exon

CupepM_p16
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: atp4
locus tag: CupepM_p16
note: C to U RNA editing; CCG(P) to UUG(L)
SIO_010081: CupepM_p16
subclass of: SO_0000673
so part of: CupepM_p16
location: 471387
location: region:471387-471387:1
so has part: feature:471387-471387:1:exon

position:471387:1
position: 471387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:471387-471387:1:exon

CupepM_p16
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: atp4
locus tag: CupepM_p16
note: C to U RNA editing; CCG(P) to UUG(L)
SIO_010081: CupepM_p16
subclass of: SO_0000673
so part of: CupepM_p16
location: 471388
location: region:471388-471388:1
so has part: feature:471388-471388:1:exon

position:471388:1
position: 471388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:471388-471388:1:exon

CupepM_p16
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: atp4
locus tag: CupepM_p16
note: C to U RNA editing; ACC(T) to ACU(T)
SIO_010081: CupepM_p16
subclass of: SO_0000673
so part of: CupepM_p16
location: 471443
location: region:471443-471443:1
so has part: feature:471443-471443:1:exon

position:471443:1
position: 471443
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:471443-471443:1:exon

CupepM_p16
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: atp4
locus tag: CupepM_p16
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p16
subclass of: SO_0000673
so part of: CupepM_p16
location: 471532
location: region:471532-471532:1
so has part: feature:471532-471532:1:exon

position:471532:1
position: 471532
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:471532-471532:1:exon

CupepM_p16
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: atp4
locus tag: CupepM_p16
note: C to U RNA editing; CCA(P) to CUA(L)
SIO_010081: CupepM_p16
subclass of: SO_0000673
so part of: CupepM_p16
location: 471544
location: region:471544-471544:1
so has part: feature:471544-471544:1:exon

position:471544:1
position: 471544
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:471544-471544:1:exon

CupepM_p16
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: atp4
locus tag: CupepM_p16
note: partial C to U RNA editing; ACU(T) to AYU(T/I)
SIO_010081: CupepM_p16
subclass of: SO_0000673
so part of: CupepM_p16
location: 471553
location: region:471553-471553:1
so has part: feature:471553-471553:1:exon

position:471553:1
position: 471553
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:471553-471553:1:exon

CupepM_p17
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: ccmC
locus tag: CupepM_p17
so part of: sequence
location: 473375..474073
location: region:473375-474073:1
so has part: feature:473375-474073:1:exon
subclass of: SO_0000010

9072818
type: Gene
SIO_000068: ncbigene

position:473375:1
position: 473375
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:474073:1
position: 474073
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:473375-474073:1:exon

CupepM_p17
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3663
gene: ccmC
locus tag: CupepM_p17
exception: RNA editing
codon start: 1
product: cytochrome c biogenesis C
translation: MSLSLLQPSFLMSKTRSYAQILIGSWLFLTAMAIYLSLWVAPLDLQQGGNSRILYVHVPVAWMSILVYIATAINTFFFLLTKHPLFLRSSGTGIEIGAFFTLFTLVTGGFWGRPMWGTFWVWDARLTSVFILFFIYLGALCFQKLSVELASILICVGLIDIPIIKFSVNWWNTLHQPGSISRFGTSIHVPMPIPILSNFANFPFSTRILFVLETRLPIPSFPESPLTEEIEA
SIO_010081: CupepM_p17
subclass of: SO_0000673
so part of: CupepM_p17
location: 473375..474073
location: region:473375-474073:1
so has part: feature:473375-474073:1:exon

YP_003587359.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:473375-474073:1:exon

CupepM_p17
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmC
locus tag: CupepM_p17
note: partial C to U RNA editing; CGG(R) to YGG(R/W)
SIO_010081: CupepM_p17
subclass of: SO_0000673
so part of: CupepM_p17
location: 473450
location: region:473450-473450:1
so has part: feature:473450-473450:1:exon

position:473450:1
position: 473450
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:473450-473450:1:exon

CupepM_p17
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmC
locus tag: CupepM_p17
note: partial C to U RNA editing; CAU(H) to YAU(H/Y)
SIO_010081: CupepM_p17
subclass of: SO_0000673
so part of: CupepM_p17
location: 473477
location: region:473477-473477:1
so has part: feature:473477-473477:1:exon

position:473477:1
position: 473477
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:473477-473477:1:exon

CupepM_p17
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmC
locus tag: CupepM_p17
note: partial C to U RNA editing; CGG(R) to YGG(R/W)
SIO_010081: CupepM_p17
subclass of: SO_0000673
so part of: CupepM_p17
location: 473489
location: region:473489-473489:1
so has part: feature:473489-473489:1:exon

position:473489:1
position: 473489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:473489-473489:1:exon

CupepM_p17
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmC
locus tag: CupepM_p17
note: partial C to U RNA editing; GCG(A) to GYG(A/V)
SIO_010081: CupepM_p17
subclass of: SO_0000673
so part of: CupepM_p17
location: 473553
location: region:473553-473553:1
so has part: feature:473553-473553:1:exon

position:473553:1
position: 473553
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:473553-473553:1:exon

CupepM_p17
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmC
locus tag: CupepM_p17
note: partial C to U RNA editing; CGG(R) to YGG(R/W)
SIO_010081: CupepM_p17
subclass of: SO_0000673
so part of: CupepM_p17
location: 473558
location: region:473558-473558:1
so has part: feature:473558-473558:1:exon

position:473558:1
position: 473558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:473558-473558:1:exon

CupepM_p17
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmC
locus tag: CupepM_p17
note: partial C to U RNA editing; CCC(P) to CCY(P)
SIO_010081: CupepM_p17
subclass of: SO_0000673
so part of: CupepM_p17
location: 473626
location: region:473626-473626:1
so has part: feature:473626-473626:1:exon

position:473626:1
position: 473626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:473626-473626:1:exon

CupepM_p17
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmC
locus tag: CupepM_p17
note: C to U RNA editing; ACA(T) to AUA(I)
SIO_010081: CupepM_p17
subclass of: SO_0000673
so part of: CupepM_p17
location: 473655
location: region:473655-473655:1
so has part: feature:473655-473655:1:exon

position:473655:1
position: 473655
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:473655-473655:1:exon

CupepM_p17
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmC
locus tag: CupepM_p17
note: C to U RNA editing; CGG(R) to UGG(W)
SIO_010081: CupepM_p17
subclass of: SO_0000673
so part of: CupepM_p17
location: 473705
location: region:473705-473705:1
so has part: feature:473705-473705:1:exon

position:473705:1
position: 473705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:473705-473705:1:exon

CupepM_p17
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmC
locus tag: CupepM_p17
note: C to U RNA editing; UCG(S) to UUG(L)
SIO_010081: CupepM_p17
subclass of: SO_0000673
so part of: CupepM_p17
location: 473769
location: region:473769-473769:1
so has part: feature:473769-473769:1:exon

position:473769:1
position: 473769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:473769-473769:1:exon

CupepM_p17
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmC
locus tag: CupepM_p17
note: partial C to U RNA editing; UUC(F) to UUY(F)
SIO_010081: CupepM_p17
subclass of: SO_0000673
so part of: CupepM_p17
location: 473773
location: region:473773-473773:1
so has part: feature:473773-473773:1:exon

position:473773:1
position: 473773
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:473773-473773:1:exon

CupepM_p17
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmC
locus tag: CupepM_p17
note: partial C to U RNA editing; CUU(L) to YUU(L/F)
SIO_010081: CupepM_p17
subclass of: SO_0000673
so part of: CupepM_p17
location: 473774
location: region:473774-473774:1
so has part: feature:473774-473774:1:exon

position:473774:1
position: 473774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:473774-473774:1:exon

CupepM_p17
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmC
locus tag: CupepM_p17
note: partial C to U RNA editing; CCU(P) to YCU(P/S)
SIO_010081: CupepM_p17
subclass of: SO_0000673
so part of: CupepM_p17
location: 473810
location: region:473810-473810:1
so has part: feature:473810-473810:1:exon

position:473810:1
position: 473810
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:473810-473810:1:exon

CupepM_p17
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmC
locus tag: CupepM_p17
note: C to U RNA editing; CCG(P) to CUG(L)
SIO_010081: CupepM_p17
subclass of: SO_0000673
so part of: CupepM_p17
location: 473820
location: region:473820-473820:1
so has part: feature:473820-473820:1:exon

position:473820:1
position: 473820
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:473820-473820:1:exon

CupepM_p17
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmC
locus tag: CupepM_p17
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p17
subclass of: SO_0000673
so part of: CupepM_p17
location: 473832
location: region:473832-473832:1
so has part: feature:473832-473832:1:exon

position:473832:1
position: 473832
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:473832-473832:1:exon

CupepM_p17
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmC
locus tag: CupepM_p17
note: C to U RNA editing; CGU(R) to UGU(C)
SIO_010081: CupepM_p17
subclass of: SO_0000673
so part of: CupepM_p17
location: 473837
location: region:473837-473837:1
so has part: feature:473837-473837:1:exon

position:473837:1
position: 473837
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:473837-473837:1:exon

CupepM_p17
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmC
locus tag: CupepM_p17
note: C to U RNA editing; CCG(P) to CUG(L)
SIO_010081: CupepM_p17
subclass of: SO_0000673
so part of: CupepM_p17
location: 473847
location: region:473847-473847:1
so has part: feature:473847-473847:1:exon

position:473847:1
position: 473847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:473847-473847:1:exon

CupepM_p17
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmC
locus tag: CupepM_p17
note: C to U RNA editing; UCG(S) to UUG(L)
SIO_010081: CupepM_p17
subclass of: SO_0000673
so part of: CupepM_p17
location: 473895
location: region:473895-473895:1
so has part: feature:473895-473895:1:exon

position:473895:1
position: 473895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:473895-473895:1:exon

CupepM_p17
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmC
locus tag: CupepM_p17
note: C to U RNA editing; UCU(S) to UUU(F)
SIO_010081: CupepM_p17
subclass of: SO_0000673
so part of: CupepM_p17
location: 473922
location: region:473922-473922:1
so has part: feature:473922-473922:1:exon

position:473922:1
position: 473922
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:473922-473922:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: t-element for generation of 3' mRNA terminus of ccmC gene; see PubMed ID 17488843; similar to chloroplast-like trnI(TAT), with expanded anticodon loop
so part of: sequence
location: 474114..474203
location: region:474114-474203:1
so has part: feature:474114-474203:1:region

position:474114:1
position: 474114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:474203:1
position: 474203
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:474114-474203:1:region

CupepM_t06
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: trnQ(TTG)
locus tag: CupepM_t06
note: anticodon:TTG
so part of: sequence
location: 517723..517794
location: region:517723-517794:1
so has part: feature:517723-517794:1:exon
subclass of: SO_0000663

9072823
type: Gene
SIO_000068: ncbigene

position:517723:1
position: 517723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:517794:1
position: 517794
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:517723-517794:1:exon

CupepM_t06
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3663
gene: trnQ(TTG)
locus tag: CupepM_t06
product: tRNA-Gln
SIO_010081: CupepM_t06
subclass of: SO_0000673
so part of: CupepM_t06
location: 517723..517794
location: region:517723-517794:1
so has part: feature:517723-517794:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:517723-517794:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: similar to chloroplast psbC (LSC)
so part of: sequence
location: 520063..520171
location: region:520063-520171:1
so has part: feature:520063-520171:1:region

position:520063:1
position: 520063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:520171:1
position: 520171
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:520063-520171:1:region

CupepM_p06
type: Exon
subclass of: SO_0000147
RO_0002162: 3663
gene: nad1
locus tag: CupepM_p06
number: 1
SIO_010081: CupepM_p06
subclass of: SO_0000673
so part of: CupepM_p06
location: 521041..521427
location: region:521041-521427:1
so has part: feature:521041-521427:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:521041-521427:1:exon

CupepM_p06
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad1
locus tag: CupepM_p06
note: C to U RNA editing; ACG(T) to AUG(M)
SIO_010081: CupepM_p06
subclass of: SO_0000673
so part of: CupepM_p06
location: 521042
location: region:521042-521042:1
so has part: feature:521042-521042:1:exon

position:521042:1
position: 521042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:521042-521042:1:exon

CupepM_p06
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad1
locus tag: CupepM_p06
note: C to U RNA editing; UCC(S) to UUC(F)
SIO_010081: CupepM_p06
subclass of: SO_0000673
so part of: CupepM_p06
location: 521255
location: region:521255-521255:1
so has part: feature:521255-521255:1:exon

position:521255:1
position: 521255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:521255-521255:1:exon

CupepM_p06
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad1
locus tag: CupepM_p06
note: C to U RNA editing; CGG(R) to UGG(W)
SIO_010081: CupepM_p06
subclass of: SO_0000673
so part of: CupepM_p06
location: 521305
location: region:521305-521305:1
so has part: feature:521305-521305:1:exon

position:521305:1
position: 521305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:521305-521305:1:exon

CupepM_p06
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad1
locus tag: CupepM_p06
note: C to U RNA editing; CCG(P) to CUG(L)
SIO_010081: CupepM_p06
subclass of: SO_0000673
so part of: CupepM_p06
location: 521348
location: region:521348-521348:1
so has part: feature:521348-521348:1:exon

position:521348:1
position: 521348
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:521348-521348:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: similar to chloroplast rbcL (LSC)
so part of: sequence
location: 584149..584899
location: region:584149-584899:1
so has part: feature:584149-584899:1:region

position:584149:1
position: 584149
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:584899:1
position: 584899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:584149-584899:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: similar to chloroplast IR region from rpl2 to ycf2
so part of: sequence
location: 609973..615793
location: region:609973-615793:1
so has part: feature:609973-615793:1:region

position:609973:1
position: 609973
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:615793:1
position: 615793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:609973-615793:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: putative trnI(CAT)-cp with anticodon CAT; intact chloroplast-like trnI embedded within larger region of chloroplast DNA; possibly functional
so part of: sequence
location: complement(610481..610554)
location: region:610481-610554:-1
so has part: feature:610481-610554:-1:region

position:610481:-1
position: 610481
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:610554:-1
position: 610554
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:610481-610554:-1:region

CupepM_p18
type: Exon
subclass of: SO_0000147
RO_0002162: 3663
gene: nad2
locus tag: CupepM_p18
number: 2
SIO_010081: CupepM_p18
subclass of: SO_0000673
so part of: CupepM_p18
location: complement(616874..617265)
location: region:616874-617265:-1
so has part: feature:616874-617265:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:616874-617265:-1:exon

CupepM_p18
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad2
locus tag: CupepM_p18
note: C to U RNA editing; UCG(S) to UUG(L)
SIO_010081: CupepM_p18
subclass of: SO_0000673
so part of: CupepM_p18
location: complement(616922)
location: region:616922-616922:-1
so has part: feature:616922-616922:-1:exon

position:616922:-1
position: 616922
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:616922-616922:-1:exon

CupepM_p18
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad2
locus tag: CupepM_p18
note: C to U RNA editing; CCU(P) to CUU(L)
SIO_010081: CupepM_p18
subclass of: SO_0000673
so part of: CupepM_p18
location: complement(616991)
location: region:616991-616991:-1
so has part: feature:616991-616991:-1:exon

position:616991:-1
position: 616991
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:616991-616991:-1:exon

CupepM_p18
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad2
locus tag: CupepM_p18
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p18
subclass of: SO_0000673
so part of: CupepM_p18
location: complement(617018)
location: region:617018-617018:-1
so has part: feature:617018-617018:-1:exon

position:617018:-1
position: 617018
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:617018-617018:-1:exon

CupepM_p18
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad2
locus tag: CupepM_p18
note: C to U RNA editing; CAU(H) to UAU(Y)
SIO_010081: CupepM_p18
subclass of: SO_0000673
so part of: CupepM_p18
location: complement(617025)
location: region:617025-617025:-1
so has part: feature:617025-617025:-1:exon

position:617025:-1
position: 617025
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:617025-617025:-1:exon

CupepM_p18
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad2
locus tag: CupepM_p18
note: C to U RNA editing; CGC(R) to UGC(C)
SIO_010081: CupepM_p18
subclass of: SO_0000673
so part of: CupepM_p18
location: complement(617052)
location: region:617052-617052:-1
so has part: feature:617052-617052:-1:exon

position:617052:-1
position: 617052
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:617052-617052:-1:exon

CupepM_p18
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad2
locus tag: CupepM_p18
note: C to U RNA editing; CCU(P) to UCU(S)
SIO_010081: CupepM_p18
subclass of: SO_0000673
so part of: CupepM_p18
location: complement(617058)
location: region:617058-617058:-1
so has part: feature:617058-617058:-1:exon

position:617058:-1
position: 617058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:617058-617058:-1:exon

CupepM_p18
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad2
locus tag: CupepM_p18
note: C to U RNA editing; CCA(P) to CUA(L)
SIO_010081: CupepM_p18
subclass of: SO_0000673
so part of: CupepM_p18
location: complement(617063)
location: region:617063-617063:-1
so has part: feature:617063-617063:-1:exon

position:617063:-1
position: 617063
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:617063-617063:-1:exon

CupepM_p18
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad2
locus tag: CupepM_p18
note: C to U RNA editing; UCU(S) to UUU(F)
SIO_010081: CupepM_p18
subclass of: SO_0000673
so part of: CupepM_p18
location: complement(617111)
location: region:617111-617111:-1
so has part: feature:617111-617111:-1:exon

position:617111:-1
position: 617111
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:617111-617111:-1:exon

CupepM_p18
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad2
locus tag: CupepM_p18
note: C to U RNA editing; UUC(F) to UUU(F)
SIO_010081: CupepM_p18
subclass of: SO_0000673
so part of: CupepM_p18
location: complement(617116)
location: region:617116-617116:-1
so has part: feature:617116-617116:-1:exon

position:617116:-1
position: 617116
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:617116-617116:-1:exon

CupepM_p18
type: Intron
subclass of: SO_0000188
RO_0002162: 3663
gene: nad2
locus tag: CupepM_p18
note: cis-spliced intron
number: 1
SIO_010081: CupepM_p18
subclass of: SO_0000673
so part of: CupepM_p18
location: complement(617266..618471)
location: region:617266-618471:-1
so has part: feature:617266-618471:-1:exon

position:617266:-1
position: 617266
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:618471:-1
position: 618471
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:617266-618471:-1:exon

CupepM_p18
type: Exon
subclass of: SO_0000147
RO_0002162: 3663
gene: nad2
locus tag: CupepM_p18
number: 1
SIO_010081: CupepM_p18
subclass of: SO_0000673
so part of: CupepM_p18
location: complement(618472..618624)
location: region:618472-618624:-1
so has part: feature:618472-618624:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:618472-618624:-1:exon

CupepM_p18
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad2
locus tag: CupepM_p18
note: C to U RNA editing; UCC(S) to UUC(F)
SIO_010081: CupepM_p18
subclass of: SO_0000673
so part of: CupepM_p18
location: complement(618599)
location: region:618599-618599:-1
so has part: feature:618599-618599:-1:exon

position:618599:-1
position: 618599
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:618599-618599:-1:exon

CupepM_p19
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: sdh3
locus tag: CupepM_p19
so part of: sequence
location: complement(619213..619530)
location: region:619213-619530:-1
so has part: feature:619213-619530:-1:exon
subclass of: SO_0000010

9072856
type: Gene
SIO_000068: ncbigene

position:619213:-1
position: 619213
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:619530:-1
position: 619530
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:619213-619530:-1:exon

CupepM_p19
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3663
gene: sdh3
locus tag: CupepM_p19
exception: RNA editing
codon start: 1
product: succinate dehydrogenase subunit 3
translation: MNILRPLSPHLPIYKPQLTSTFSIFHRISGAFLATLVLFFYLLCLKMGLICFTHESFYRFFFYSSKLILISVEITALALSYHLYKGVRHLLTDFVSFRKRERKTN
SIO_010081: CupepM_p19
subclass of: SO_0000673
so part of: CupepM_p19
location: complement(619213..619530)
location: region:619213-619530:-1
so has part: feature:619213-619530:-1:exon

YP_003587361.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:619213-619530:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: partial C to U RNA editing; CUC(L) to YUC(L/F)
so part of: sequence
location: 619350
location: region:619350-619350:1
so has part: feature:619350-619350:1:region

position:619350:1
position: 619350
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:619350-619350:1:region

CupepM_p19
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: sdh3
locus tag: CupepM_p19
note: partial C to U RNA editing; UUC(F) to UUY(F)
SIO_010081: CupepM_p19
subclass of: SO_0000673
so part of: CupepM_p19
location: complement(619351)
location: region:619351-619351:-1
so has part: feature:619351-619351:-1:exon

position:619351:-1
position: 619351
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:619351-619351:-1:exon

CupepM_p19
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: sdh3
locus tag: CupepM_p19
note: C to U RNA editing; UCC(S) to UUC(F)
SIO_010081: CupepM_p19
subclass of: SO_0000673
so part of: CupepM_p19
location: complement(619457)
location: region:619457-619457:-1
so has part: feature:619457-619457:-1:exon

position:619457:-1
position: 619457
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:619457-619457:-1:exon

CupepM_p19
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: sdh3
locus tag: CupepM_p19
note: C to U RNA editing; CCA(P) to UCA(S)
SIO_010081: CupepM_p19
subclass of: SO_0000673
so part of: CupepM_p19
location: complement(619464)
location: region:619464-619464:-1
so has part: feature:619464-619464:-1:exon

position:619464:-1
position: 619464
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:619464-619464:-1:exon

CupepM_p19
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: sdh3
locus tag: CupepM_p19
note: partial C to U RNA editing; CUC(L) to CUY(L)
SIO_010081: CupepM_p19
subclass of: SO_0000673
so part of: CupepM_p19
location: complement(619477)
location: region:619477-619477:-1
so has part: feature:619477-619477:-1:exon

position:619477:-1
position: 619477
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:619477-619477:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: similar to chloroplast LSC region from ndhK to ndhC
so part of: sequence
location: 626006..626251
location: region:626006-626251:1
so has part: feature:626006-626251:1:region

position:626006:1
position: 626006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:626251:1
position: 626251
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:626006-626251:1:region

CupepM_p06
type: Exon
subclass of: SO_0000147
RO_0002162: 3663
gene: nad1
locus tag: CupepM_p06
number: 5
SIO_010081: CupepM_p06
subclass of: SO_0000673
so part of: CupepM_p06
location: complement(629432..629690)
location: region:629432-629690:-1
so has part: feature:629432-629690:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:629432-629690:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: C to U RNA editing; CGG(R) to UGG(W)
so part of: sequence
location: 629482
location: region:629482-629482:1
so has part: feature:629482-629482:1:region

position:629482:1
position: 629482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:629482-629482:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: C to U RNA editing; CGG(R) to UGG(W)
so part of: sequence
location: 629512
location: region:629512-629512:1
so has part: feature:629512-629512:1:region

position:629512:1
position: 629512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:629512-629512:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: C to U RNA editing; CUC(L) to UUC(F)
so part of: sequence
location: 629587
location: region:629587-629587:1
so has part: feature:629587-629587:1:region

position:629587:1
position: 629587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:629587-629587:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: C to U RNA editing; CCG(P) to CUG(L)
so part of: sequence
location: 629655
location: region:629655-629655:1
so has part: feature:629655-629655:1:region

position:629655:1
position: 629655
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:629655-629655:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: C to U RNA editing; CCA(P) to CUA(L)
so part of: sequence
location: 629667
location: region:629667-629667:1
so has part: feature:629667-629667:1:region

position:629667:1
position: 629667
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:629667-629667:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: C to U RNA editing; UCU(S) to UUU(F)
so part of: sequence
location: 629670
location: region:629670-629670:1
so has part: feature:629670-629670:1:region

position:629670:1
position: 629670
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:629670-629670:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: C to U RNA editing; UCG(S) to UUG(L)
so part of: sequence
location: 629676
location: region:629676-629676:1
so has part: feature:629676-629676:1:region

position:629676:1
position: 629676
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:629676-629676:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: C to U RNA editing; CCA(P) to CUA(L)
so part of: sequence
location: 629685
location: region:629685-629685:1
so has part: feature:629685-629685:1:region

position:629685:1
position: 629685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:629685-629685:1:region

CupepM_p06
type: Intron
subclass of: SO_0000188
RO_0002162: 3663
gene: nad1
locus tag: CupepM_p06
note: cis-spliced intron
number: 4
SIO_010081: CupepM_p06
subclass of: SO_0000673
so part of: CupepM_p06
location: complement(629691..632970)
location: region:629691-632970:-1
so has part: feature:629691-632970:-1:exon

position:629691:-1
position: 629691
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:632970:-1
position: 632970
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:629691-632970:-1:exon

CupepM_p20
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: matR
locus tag: CupepM_p20
so part of: sequence
location: complement(630374..632308)
location: region:630374-632308:-1
so has part: feature:630374-632308:-1:exon
subclass of: SO_0000010

9072851
type: Gene
SIO_000068: ncbigene

position:630374:-1
position: 630374
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:632308:-1
position: 632308
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:630374-632308:-1:exon

CupepM_p20
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3663
gene: matR
locus tag: CupepM_p20
exception: RNA editing
codon start: 1
product: maturase
translation: MKEAIRMVLESIYDPEFPDTSHFHSGRGRHSALRRIKEEWGTSRWFLEFDIRKCFHTIDRHRLISILKEEIDDPKFFYSIHQVFSGRRLVGGEKGPDYSVPHSVLLSALPGNIYLHKLDQEIGRIQQKYEIPIVQRIRSVLLRTGDDQSNSGEEASFNAPQDYRALIMGRVKSFQRKAAFHSLVSSWHTPHTSTTRLRGDQKTPFGLPTALAAFLNKPSSLLCAAFLIEATGLTPQDEFYGRERCNKKLAMREPEKYYKRKGLMIELGGEARLVIRSERRLAPKLAPLKPHYLIRISYARYADDLLLGIVGAVELLIEIQKRIAHFLQSGLNLWVGFAGTTTIAARSTVEFLGTVIREVPPRTTPIQFLRELEKRLRVKHRIHITACHLRYAIHSNLTNLGNNIPIKELTKGISQRGSLLDGVQLAETLGTAGVIRPQVSVLWGTVKHIRQRSRGISLLHSSGRSKAPSDVQQAVSRSGMSDGKLSLYTPAGRKAAGERGGHWAGSISSEFPIHLEAPIKKILRRLRDRGIISRRRPWPIHVACLTNVSDGDIVNWFAGIAISLLSYYRCCDNLYQVRTIVDHQIRWSAIFTLAHKHKSSAQNIILKYSKDPNIVNQEGGQTEAEFPNSIELGKLGPGQDPNHY
SIO_010081: CupepM_p20
subclass of: SO_0000673
so part of: CupepM_p20
location: complement(630374..632308)
location: region:630374-632308:-1
so has part: feature:630374-632308:-1:exon

YP_003587362.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:630374-632308:-1:exon

CupepM_p20
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: matR
locus tag: CupepM_p20
note: C to U RNA editing; CCA(P) to CUA(L)
SIO_010081: CupepM_p20
subclass of: SO_0000673
so part of: CupepM_p20
location: complement(630492)
location: region:630492-630492:-1
so has part: feature:630492-630492:-1:exon

position:630492:-1
position: 630492
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:630492-630492:-1:exon

CupepM_p20
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: matR
locus tag: CupepM_p20
note: C to U RNA editing; UAC(Y) to UAU(Y)
SIO_010081: CupepM_p20
subclass of: SO_0000673
so part of: CupepM_p20
location: complement(630584)
location: region:630584-630584:-1
so has part: feature:630584-630584:-1:exon

position:630584:-1
position: 630584
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:630584-630584:-1:exon

CupepM_p20
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: matR
locus tag: CupepM_p20
note: C to U RNA editing; UCC(S) to UUC(F)
SIO_010081: CupepM_p20
subclass of: SO_0000673
so part of: CupepM_p20
location: complement(630639)
location: region:630639-630639:-1
so has part: feature:630639-630639:-1:exon

position:630639:-1
position: 630639
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:630639-630639:-1:exon

CupepM_p20
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: matR
locus tag: CupepM_p20
note: C to U RNA editing; CCU(P) to CUU(L)
SIO_010081: CupepM_p20
subclass of: SO_0000673
so part of: CupepM_p20
location: complement(631254)
location: region:631254-631254:-1
so has part: feature:631254-631254:-1:exon

position:631254:-1
position: 631254
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:631254-631254:-1:exon

CupepM_p06
type: Exon
subclass of: SO_0000147
RO_0002162: 3663
gene: nad1
locus tag: CupepM_p06
number: 4
SIO_010081: CupepM_p06
subclass of: SO_0000673
so part of: CupepM_p06
location: complement(632971..633029)
location: region:632971-633029:-1
so has part: feature:632971-633029:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:632971-633029:-1:exon

CupepM_p06
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad1
locus tag: CupepM_p06
note: C to U RNA editing; UCU(S) to UUU(F)
SIO_010081: CupepM_p06
subclass of: SO_0000673
so part of: CupepM_p06
location: complement(633016)
location: region:633016-633016:-1
so has part: feature:633016-633016:-1:exon

position:633016:-1
position: 633016
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:633016-633016:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: similar to chloroplast ycf2 (IR)
so part of: sequence
location: 654892..654983
location: region:654892-654983:1
so has part: feature:654892-654983:1:region

position:654892:1
position: 654892
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:654983:1
position: 654983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:654892-654983:1:region

CupepM_p21
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: rpl2
locus tag: CupepM_p21
so part of: sequence
location: 660305..662689
location: region:660305-662689:1
so has part: feature:660305-662689:1:exon
subclass of: SO_0000010

9072829
type: Gene
SIO_000068: ncbigene

position:660305:1
position: 660305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:662689:1
position: 662689
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:660305-662689:1:exon

CupepM_p21
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3663
gene: rpl2
locus tag: CupepM_p21
exception: RNA editing
codon start: 1
product: ribosomal protein L2
translation: MRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERIEYDPNRSSRIALVRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSTPGKVDQRKVACFSPGQMAAYVVVGLPTRIPPCSKSPFTSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSSLGFPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAHRMKRKAALDWQSFRRQETDGLVGGAEHNESKPETDPASLPAKPIGEGPKDGACKVNRAPVTYLIASHQLEAGKMVMNYDWSKPSTSDLLRPAQNGHTS
SIO_010081: CupepM_p21
subclass of: SO_0000673
so part of: CupepM_p21
location: join(660305..661186,662573..662689)
location: region:660305-662689:1
so has part: feature:660305-661186:1:exon
so has part: feature:662573-662689:1:exon

YP_003587363.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:660305-661186:1:exon

position:661186:1
position: 661186
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:662573-662689:1:exon

position:662573:1
position: 662573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CupepM_p21
type: Exon
subclass of: SO_0000147
RO_0002162: 3663
gene: rpl2
locus tag: CupepM_p21
number: 1
SIO_010081: CupepM_p21
subclass of: SO_0000673
so part of: CupepM_p21
location: 660305..661186
location: region:660305-661186:1
so has part: feature:660305-661186:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:660305-661186:1:exon

CupepM_p21
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rpl2
locus tag: CupepM_p21
note: C to U RNA editing; CCA(P) to CUA(L)
SIO_010081: CupepM_p21
subclass of: SO_0000673
so part of: CupepM_p21
location: 660519
location: region:660519-660519:1
so has part: feature:660519-660519:1:exon

position:660519:1
position: 660519
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:660519-660519:1:exon

CupepM_p21
type: Intron
subclass of: SO_0000188
RO_0002162: 3663
gene: rpl2
locus tag: CupepM_p21
SIO_010081: CupepM_p21
subclass of: SO_0000673
so part of: CupepM_p21
location: 661187..662572
location: region:661187-662572:1
so has part: feature:661187-662572:1:exon

position:661187:1
position: 661187
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:662572:1
position: 662572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:661187-662572:1:exon

CupepM_p21
type: Exon
subclass of: SO_0000147
RO_0002162: 3663
gene: rpl2
locus tag: CupepM_p21
number: 2
SIO_010081: CupepM_p21
subclass of: SO_0000673
so part of: CupepM_p21
location: 662573..662689
location: region:662573-662689:1
so has part: feature:662573-662689:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:662573-662689:1:exon

CupepM_p21
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rpl2
locus tag: CupepM_p21
note: degenerate portion of rpl2 exon 2 (see PubMed ID 11719578)
pseudo: true
SIO_010081: CupepM_p21
subclass of: SO_0000673
so part of: CupepM_p21
location: 662690..663093
location: region:662690-663093:1
so has part: feature:662690-663093:1:exon

position:662690:1
position: 662690
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:663093:1
position: 663093
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:662690-663093:1:exon

CupepM_p22
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: rps19-1
locus tag: CupepM_p22
note: 1 of 2 rps19 genes
so part of: sequence
location: 663102..663431
location: region:663102-663431:1
so has part: feature:663102-663431:1:exon
subclass of: SO_0000010

9072841
type: Gene
SIO_000068: ncbigene

position:663102:1
position: 663102
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:663431:1
position: 663431
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:663102-663431:1:exon

CupepM_p22
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3663
gene: rps19-1
locus tag: CupepM_p22
exception: RNA editing
codon start: 1
product: ribosomal protein S19
translation: MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTFVRCKITEGRVGHKFGEFALTRKRRLSRTNIGPGKKRGESQGAYGTKRKSDFGKT
SIO_010081: CupepM_p22
subclass of: SO_0000673
so part of: CupepM_p22
location: 663102..663431
location: region:663102-663431:1
so has part: feature:663102-663431:1:exon

YP_003587364.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:663102-663431:1:exon

CupepM_p22
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps19-1
locus tag: CupepM_p22
note: partial C to U RNA editing; UCC(S) to UCY(S)
SIO_010081: CupepM_p22
subclass of: SO_0000673
so part of: CupepM_p22
location: 663239
location: region:663239-663239:1
so has part: feature:663239-663239:1:exon

position:663239:1
position: 663239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:663239-663239:1:exon

CupepM_p22
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps19-1
locus tag: CupepM_p22
note: partial C to U RNA editing; UCU(S) to UYU(S/F)
SIO_010081: CupepM_p22
subclass of: SO_0000673
so part of: CupepM_p22
location: 663265
location: region:663265-663265:1
so has part: feature:663265-663265:1:exon

position:663265:1
position: 663265
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:663265-663265:1:exon

CupepM_p22
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps19-1
locus tag: CupepM_p22
note: partial C to U RNA editing; AUC(I) to AUY(I)
SIO_010081: CupepM_p22
subclass of: SO_0000673
so part of: CupepM_p22
location: 663281
location: region:663281-663281:1
so has part: feature:663281-663281:1:exon

position:663281:1
position: 663281
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:663281-663281:1:exon

CupepM_p22
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps19-1
locus tag: CupepM_p22
note: C to U RNA editing; UCG(S) to UUG(L)
SIO_010081: CupepM_p22
subclass of: SO_0000673
so part of: CupepM_p22
location: 663322
location: region:663322-663322:1
so has part: feature:663322-663322:1:exon

position:663322:1
position: 663322
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:663322-663322:1:exon

CupepM_p23
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: rps3
locus tag: CupepM_p23
so part of: sequence
location: 663394..666976
location: region:663394-666976:1
so has part: feature:663394-666976:1:exon
subclass of: SO_0000010

9072846
type: Gene
SIO_000068: ncbigene

position:663394:1
position: 663394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:666976:1
position: 666976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:663394-666976:1:exon

CupepM_p23
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3663
gene: rps3
locus tag: CupepM_p23
exception: RNA editing
codon start: 1
product: ribosomal protein S3
translation: MARKGNPISVRLDLNRSSDSSWFSDYYYGKLLYQDVNLRSYFGSIRPPTRLTFGFRLGRCIILHFPKITFIHFFLPRRPRGLKRRAKSKPGKDQGRWWAFGKVGPIGCLHSSDDTEEERNKVRGREAEKRVESMIRLDDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKLLRVSGAFKHPKYAGVVNDIAFLIENDDSFRKTQLFKFFFPNQSRSDGPTSHLLKRTLPAVRPSLNYLVMQYLLNTKNKMHFDPVGVLNHFVAPGVAEPSTMGGANTQGRSLDKRIRSRIAFFVESLTSEKKCLAEPKKRLTHFIRQANDLRFAGTTKTTISLFPFFGATFFFPRDGVGMYKNLFFEDTREQLLGQLRIKCWNLMGKEDKVIELIEKFIDLGGIGELIKGIEMMIEIILRNRRIPYGYNSYLNEVQKMRSLLSNRTKTNTLIESVKIQSVYQSASLIAQDISFQLRNKTRSFRSIFTKIVKDIPFGMKKGVEGIRICCSGRLEGAEIARTECGKYGKTSRNVFNQKIDYASAEVSTRYGILGVKVWISYKKQKKERVISETYEI
SIO_010081: CupepM_p23
subclass of: SO_0000673
so part of: CupepM_p23
location: join(663394..663467,665353..666976)
location: region:663394-666976:1
so has part: feature:663394-663467:1:exon
so has part: feature:665353-666976:1:exon

YP_003587365.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:663394-663467:1:exon

position:663467:1
position: 663467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:665353-666976:1:exon

position:665353:1
position: 665353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CupepM_p23
type: Exon
subclass of: SO_0000147
RO_0002162: 3663
gene: rps3
locus tag: CupepM_p23
number: 1
SIO_010081: CupepM_p23
subclass of: SO_0000673
so part of: CupepM_p23
location: 663394..663467
location: region:663394-663467:1
so has part: feature:663394-663467:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:663394-663467:1:exon

CupepM_p23
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps3
locus tag: CupepM_p23
note: partial C to U RNA editing; UUC(F) to UUY(F)
SIO_010081: CupepM_p23
subclass of: SO_0000673
so part of: CupepM_p23
location: 663462
location: region:663462-663462:1
so has part: feature:663462-663462:1:exon

position:663462:1
position: 663462
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:663462-663462:1:exon

CupepM_p23
type: Intron
subclass of: SO_0000188
RO_0002162: 3663
gene: rps3
locus tag: CupepM_p23
SIO_010081: CupepM_p23
subclass of: SO_0000673
so part of: CupepM_p23
location: 663468..665352
location: region:663468-665352:1
so has part: feature:663468-665352:1:exon

position:663468:1
position: 663468
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:665352:1
position: 665352
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:663468-665352:1:exon

CupepM_p23
type: Exon
subclass of: SO_0000147
RO_0002162: 3663
gene: rps3
locus tag: CupepM_p23
number: 2
SIO_010081: CupepM_p23
subclass of: SO_0000673
so part of: CupepM_p23
location: 665353..666976
location: region:665353-666976:1
so has part: feature:665353-666976:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:665353-666976:1:exon

CupepM_p23
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps3
locus tag: CupepM_p23
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p23
subclass of: SO_0000673
so part of: CupepM_p23
location: 665370
location: region:665370-665370:1
so has part: feature:665370-665370:1:exon

position:665370:1
position: 665370
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:665370-665370:1:exon

CupepM_p23
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps3
locus tag: CupepM_p23
note: partial C to U RNA editing; UUC(F) to UUY(F)
SIO_010081: CupepM_p23
subclass of: SO_0000673
so part of: CupepM_p23
location: 665404
location: region:665404-665404:1
so has part: feature:665404-665404:1:exon

position:665404:1
position: 665404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:665404-665404:1:exon

CupepM_p23
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps3
locus tag: CupepM_p23
note: partial C to U RNA editing; CCC(P) to CCY(P)
SIO_010081: CupepM_p23
subclass of: SO_0000673
so part of: CupepM_p23
location: 665548
location: region:665548-665548:1
so has part: feature:665548-665548:1:exon

position:665548:1
position: 665548
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:665548-665548:1:exon

CupepM_p23
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps3
locus tag: CupepM_p23
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p23
subclass of: SO_0000673
so part of: CupepM_p23
location: 665793
location: region:665793-665793:1
so has part: feature:665793-665793:1:exon

position:665793:1
position: 665793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:665793-665793:1:exon

CupepM_p23
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps3
locus tag: CupepM_p23
note: C to U RNA editing; UCG(S) to UUG(L)
SIO_010081: CupepM_p23
subclass of: SO_0000673
so part of: CupepM_p23
location: 665994
location: region:665994-665994:1
so has part: feature:665994-665994:1:exon

position:665994:1
position: 665994
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:665994-665994:1:exon

CupepM_p23
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps3
locus tag: CupepM_p23
note: partial C to U RNA editing; UCG(S) to UYG(S/L)
SIO_010081: CupepM_p23
subclass of: SO_0000673
so part of: CupepM_p23
location: 666171
location: region:666171-666171:1
so has part: feature:666171-666171:1:exon

position:666171:1
position: 666171
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:666171-666171:1:exon

CupepM_p23
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps3
locus tag: CupepM_p23
note: C to U RNA editing; CCG(P) to CUG(L)
SIO_010081: CupepM_p23
subclass of: SO_0000673
so part of: CupepM_p23
location: 666648
location: region:666648-666648:1
so has part: feature:666648-666648:1:exon

position:666648:1
position: 666648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:666648-666648:1:exon

CupepM_p23
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps3
locus tag: CupepM_p23
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p23
subclass of: SO_0000673
so part of: CupepM_p23
location: 666786
location: region:666786-666786:1
so has part: feature:666786-666786:1:exon

position:666786:1
position: 666786
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:666786-666786:1:exon

CupepM_p23
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps3
locus tag: CupepM_p23
note: C to U RNA editing; CCC(P) to UCC(S)
SIO_010081: CupepM_p23
subclass of: SO_0000673
so part of: CupepM_p23
location: 666872
location: region:666872-666872:1
so has part: feature:666872-666872:1:exon

position:666872:1
position: 666872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:666872-666872:1:exon

CupepM_p24
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: rpl16
locus tag: CupepM_p24
note: start codon based on PubMed IDs 8193306 and 9327595
so part of: sequence
location: 666948..667382
location: region:666948-667382:1
so has part: feature:666948-667382:1:exon
subclass of: SO_0000010

9072848
type: Gene
SIO_000068: ncbigene

position:666948:1
position: 666948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:667382:1
position: 667382
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:666948-667382:1:exon

CupepM_p24
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3663
gene: rpl16
locus tag: CupepM_p24
exception: RNA editing
codon start: 1
product: ribosomal protein L16
translation: MLYPKRTKYSKSRKGRCSRGCKPDGTQLGFGRYGIQSCRAGRLSYRAIEAARRAIIGQFHRAMSGQSRRNGQIWVRVLADLPITGKPTEVRMGRGKGNPTGWVARVSTGQILFEIDGVSLSNARQATTLAAHKLCLSTKFVQWS
SIO_010081: CupepM_p24
subclass of: SO_0000673
so part of: CupepM_p24
location: 666948..667382
location: region:666948-667382:1
so has part: feature:666948-667382:1:exon

YP_003587366.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:666948-667382:1:exon

CupepM_p24
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rpl16
locus tag: CupepM_p24
note: C to U RNA editing; ACU(T) to AUU(I)
SIO_010081: CupepM_p24
subclass of: SO_0000673
so part of: CupepM_p24
location: 667051
location: region:667051-667051:1
so has part: feature:667051-667051:1:exon

position:667051:1
position: 667051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:667051-667051:1:exon

CupepM_p24
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rpl16
locus tag: CupepM_p24
note: partial C to U RNA editing; CUA(L) to YUA(L)
SIO_010081: CupepM_p24
subclass of: SO_0000673
so part of: CupepM_p24
location: 667179
location: region:667179-667179:1
so has part: feature:667179-667179:1:exon

position:667179:1
position: 667179
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:667179-667179:1:exon

CupepM_p24
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rpl16
locus tag: CupepM_p24
note: C to U RNA editing; CCA(P) to CUA(L)
SIO_010081: CupepM_p24
subclass of: SO_0000673
so part of: CupepM_p24
location: 667282
location: region:667282-667282:1
so has part: feature:667282-667282:1:exon

position:667282:1
position: 667282
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:667282-667282:1:exon

CupepM_p24
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rpl16
locus tag: CupepM_p24
note: C to U RNA editing; CCA(P) to CUA(L)
SIO_010081: CupepM_p24
subclass of: SO_0000673
so part of: CupepM_p24
location: 667348
location: region:667348-667348:1
so has part: feature:667348-667348:1:exon

position:667348:1
position: 667348
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:667348-667348:1:exon

CupepM_p24
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rpl16
locus tag: CupepM_p24
note: C to U RNA editing; UCG(S) to UUG(L)
SIO_010081: CupepM_p24
subclass of: SO_0000673
so part of: CupepM_p24
location: 667354
location: region:667354-667354:1
so has part: feature:667354-667354:1:exon

position:667354:1
position: 667354
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:667354-667354:1:exon

CupepM_p25
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: ccmFc
locus tag: CupepM_p25
note: synonyms: ccb438, orf438, ccb452
so part of: sequence
location: 670310..672546
location: region:670310-672546:1
so has part: feature:670310-672546:1:exon
subclass of: SO_0000010

9072840
type: Gene
SIO_000068: ncbigene

position:670310:1
position: 670310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:672546:1
position: 672546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:670310-672546:1:exon

CupepM_p25
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3663
gene: ccmFc
locus tag: CupepM_p25
exception: RNA editing
codon start: 1
product: cytochrome c biogenesis FC
translation: MVQLNNFFFFITSMVVPRGTAAPVLLKWFVSRDVSTGAPFFNGTIIPILISLFSLLVYLHSRKFIRSLDGAKSGVLVRASRPILLPDIIGRSSSETRARNALFCFVPLLHFLLLSSKGDFSYFSSFCGVLCLLFFCTLFSLPRHSSAKRERARRSKGQTLRPNGNEQGCNEKMRCSGHPHLERRFEGFGPVAFVRPSSGGTCVWGVLPEIGLEALALPTSRQLMAVGHDYYQKAPMKMNISHGGVCIFILGVLLSNTKKIEFTQRLPLGSELHMGKERCCLRGIDHLHGPTFHSICGNLLIYKPSLTNDRLIFEHDKELRADQLPINFPASYENGKQEHFLHQWMTNREHQNFWLTMFPEKRYFRERTSTTEVAIHTNLFTDLYALIGTGSSRTGGWYTTIMKLPFLFLIWIGFLLASLGGSRSLLRQLQKDKLRWN
SIO_010081: CupepM_p25
subclass of: SO_0000673
so part of: CupepM_p25
location: join(670310..671073,671997..672546)
location: region:670310-672546:1
so has part: feature:670310-671073:1:exon
so has part: feature:671997-672546:1:exon

YP_003587367.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:670310-671073:1:exon

position:671073:1
position: 671073
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:671997-672546:1:exon

position:671997:1
position: 671997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CupepM_p25
type: Exon
subclass of: SO_0000147
RO_0002162: 3663
gene: ccmFc
locus tag: CupepM_p25
number: 1
SIO_010081: CupepM_p25
subclass of: SO_0000673
so part of: CupepM_p25
location: 670310..671073
location: region:670310-671073:1
so has part: feature:670310-671073:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:670310-671073:1:exon

CupepM_p25
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmFc
locus tag: CupepM_p25
note: C to U RNA editing; CCC(P) to UCC(S)
SIO_010081: CupepM_p25
subclass of: SO_0000673
so part of: CupepM_p25
location: 670412
location: region:670412-670412:1
so has part: feature:670412-670412:1:exon

position:670412:1
position: 670412
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:670412-670412:1:exon

CupepM_p25
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmFc
locus tag: CupepM_p25
note: C to U RNA editing; UCU(S) to UUU(F)
SIO_010081: CupepM_p25
subclass of: SO_0000673
so part of: CupepM_p25
location: 670428
location: region:670428-670428:1
so has part: feature:670428-670428:1:exon

position:670428:1
position: 670428
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:670428-670428:1:exon

CupepM_p25
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmFc
locus tag: CupepM_p25
note: C to U RNA editing; UCC(S) to UUC(F)
SIO_010081: CupepM_p25
subclass of: SO_0000673
so part of: CupepM_p25
location: 670431
location: region:670431-670431:1
so has part: feature:670431-670431:1:exon

position:670431:1
position: 670431
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:670431-670431:1:exon

CupepM_p25
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmFc
locus tag: CupepM_p25
note: C to U RNA editing; CCU(P) to CUU(L)
SIO_010081: CupepM_p25
subclass of: SO_0000673
so part of: CupepM_p25
location: 670455
location: region:670455-670455:1
so has part: feature:670455-670455:1:exon

position:670455:1
position: 670455
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:670455-670455:1:exon

CupepM_p25
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmFc
locus tag: CupepM_p25
note: C to U RNA editing; CCU(P) to UCU(S)
SIO_010081: CupepM_p25
subclass of: SO_0000673
so part of: CupepM_p25
location: 670469
location: region:670469-670469:1
so has part: feature:670469-670469:1:exon

position:670469:1
position: 670469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:670469-670469:1:exon

CupepM_p25
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmFc
locus tag: CupepM_p25
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p25
subclass of: SO_0000673
so part of: CupepM_p25
location: 670614
location: region:670614-670614:1
so has part: feature:670614-670614:1:exon

position:670614:1
position: 670614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:670614-670614:1:exon

CupepM_p25
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmFc
locus tag: CupepM_p25
note: C to U RNA editing; CGU(R) to UGU(C)
SIO_010081: CupepM_p25
subclass of: SO_0000673
so part of: CupepM_p25
location: 670619
location: region:670619-670619:1
so has part: feature:670619-670619:1:exon

position:670619:1
position: 670619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:670619-670619:1:exon

CupepM_p25
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmFc
locus tag: CupepM_p25
note: C to U RNA editing; CGU(R) to UGU(C)
SIO_010081: CupepM_p25
subclass of: SO_0000673
so part of: CupepM_p25
location: 670715
location: region:670715-670715:1
so has part: feature:670715-670715:1:exon

position:670715:1
position: 670715
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:670715-670715:1:exon

CupepM_p25
type: Intron
subclass of: SO_0000188
RO_0002162: 3663
gene: ccmFc
locus tag: CupepM_p25
SIO_010081: CupepM_p25
subclass of: SO_0000673
so part of: CupepM_p25
location: 671074..671996
location: region:671074-671996:1
so has part: feature:671074-671996:1:exon

position:671074:1
position: 671074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:671996:1
position: 671996
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:671074-671996:1:exon

CupepM_p25
type: Exon
subclass of: SO_0000147
RO_0002162: 3663
gene: ccmFc
locus tag: CupepM_p25
number: 2
SIO_010081: CupepM_p25
subclass of: SO_0000673
so part of: CupepM_p25
location: 671997..672546
location: region:671997-672546:1
so has part: feature:671997-672546:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:671997-672546:1:exon

CupepM_p25
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmFc
locus tag: CupepM_p25
note: C to U RNA editing; UCU(S) to UUU(F)
SIO_010081: CupepM_p25
subclass of: SO_0000673
so part of: CupepM_p25
location: 672107
location: region:672107-672107:1
so has part: feature:672107-672107:1:exon

position:672107:1
position: 672107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:672107-672107:1:exon

CupepM_p25
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmFc
locus tag: CupepM_p25
note: C to U RNA editing; CCA(P) to CUA(L)
SIO_010081: CupepM_p25
subclass of: SO_0000673
so part of: CupepM_p25
location: 672368
location: region:672368-672368:1
so has part: feature:672368-672368:1:exon

position:672368:1
position: 672368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:672368-672368:1:exon

CupepM_p25
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmFc
locus tag: CupepM_p25
note: partial C to U RNA editing; CUA(L) to YUA(L)
SIO_010081: CupepM_p25
subclass of: SO_0000673
so part of: CupepM_p25
location: 672379
location: region:672379-672379:1
so has part: feature:672379-672379:1:exon

position:672379:1
position: 672379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:672379-672379:1:exon

CupepM_p25
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmFc
locus tag: CupepM_p25
note: C to U RNA editing; UCG(S) to UUG(L)
SIO_010081: CupepM_p25
subclass of: SO_0000673
so part of: CupepM_p25
location: 672389
location: region:672389-672389:1
so has part: feature:672389-672389:1:exon

position:672389:1
position: 672389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:672389-672389:1:exon

CupepM_p25
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmFc
locus tag: CupepM_p25
note: C to U RNA editing; CGG(R) to UGG(W)
SIO_010081: CupepM_p25
subclass of: SO_0000673
so part of: CupepM_p25
location: 672463
location: region:672463-672463:1
so has part: feature:672463-672463:1:exon

position:672463:1
position: 672463
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:672463-672463:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: similar to chloroplast LSC region from psbB to petA-psbJ spacer
so part of: sequence
location: 676078..685205
location: region:676078-685205:1
so has part: feature:676078-685205:1:region

position:676078:1
position: 676078
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:685205:1
position: 685205
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:676078-685205:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: putative trnP(TGG)-cp with anticodon TGG; intact chloroplast-like trnP embedded within larger region of chloroplast DNA; possibly functional
so part of: sequence
location: 682940..683013
location: region:682940-683013:1
so has part: feature:682940-683013:1:region

position:682940:1
position: 682940
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:683013:1
position: 683013
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:682940-683013:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: similar to chloroplast ycf2 (IR)
so part of: sequence
location: 695990..696091
location: region:695990-696091:1
so has part: feature:695990-696091:1:region

position:695990:1
position: 695990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:696091:1
position: 696091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:695990-696091:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: similar to chloroplast LSC region from trnH-psbA spacer to atpA
so part of: sequence
location: 696102..702921
location: region:696102-702921:1
so has part: feature:696102-702921:1:region

position:696102:1
position: 696102
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:702921:1
position: 702921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:696102-702921:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: putative trnQ(TTG)-cp with anticodon TTG; intact chloroplast-like trnQ embedded within larger region of chloroplast DNA; possibly functional
so part of: sequence
location: complement(701050..701121)
location: region:701050-701121:-1
so has part: feature:701050-701121:-1:region

position:701050:-1
position: 701050
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:701121:-1
position: 701121
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:701050-701121:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: putative trnS(GCT)-cp with anticodon GCT; intact chloroplast-like trnS embedded within larger region of chloroplast DNA; possibly functional
so part of: sequence
location: complement(701979..702066)
location: region:701979-702066:-1
so has part: feature:701979-702066:-1:region

position:701979:-1
position: 701979
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:702066:-1
position: 702066
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:701979-702066:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: similar to chloroplast LSC region trnT-psbD spacer to psbM-trnD spacer
so part of: sequence
location: 703758..705194
location: region:703758-705194:1
so has part: feature:703758-705194:1:region

position:703758:1
position: 703758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:705194:1
position: 705194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:703758-705194:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: similar to trnD(GTC)-cp with anticodon GTC; intact chloroplast-like trnD embedded within larger region of chloroplast DNA; possibly functional
so part of: sequence
location: 704568..704641
location: region:704568-704641:1
so has part: feature:704568-704641:1:region

position:704568:1
position: 704568
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:704641:1
position: 704641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:704568-704641:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: similar to chloroplast LSC region from atpB to trnT-trnL spacer
so part of: sequence
location: 723444..730580
location: region:723444-730580:1
so has part: feature:723444-730580:1:region

position:723444:1
position: 723444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:730580:1
position: 730580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:723444-730580:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: degenerate chloroplast-like trnF embedded within larger region of chloroplast DNA
so part of: sequence
location: complement(729196..729269)
location: region:729196-729269:-1
so has part: feature:729196-729269:-1:region

position:729196:-1
position: 729196
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:729269:-1
position: 729269
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:729196-729269:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: similar to chloroplast ycf2 (IR)
so part of: sequence
location: 739414..739680
location: region:739414-739680:1
so has part: feature:739414-739680:1:region

position:739414:1
position: 739414
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:739680:1
position: 739680
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:739414-739680:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: similar to chloroplast LSC region from trnT-psbD spacer to rpoB-trnC spacer
so part of: sequence
location: 740509..744742
location: region:740509-744742:1
so has part: feature:740509-744742:1:region

position:740509:1
position: 740509
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:744742:1
position: 744742
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:740509-744742:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: degenerate chloroplast-like trnE embedded within larger region of chloroplast DNA
pseudo: true
so part of: sequence
location: 741510..741570
location: region:741510-741570:1
so has part: feature:741510-741570:1:region

position:741510:1
position: 741510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:741570:1
position: 741570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:741510-741570:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: putative trnY(GTA)-cp with anticodon GTA; degenerate chloroplast-like trnY embedded within larger region of chloroplast DNA
pseudo: true
so part of: sequence
location: 741640..741727
location: region:741640-741727:1
so has part: feature:741640-741727:1:region

position:741640:1
position: 741640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:741727:1
position: 741727
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:741640-741727:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: putative trnD(GTC)-cp with anticodon GTC; intact chloroplast-like trnD embedded within larger region of chloroplast DNA; possibly functional
so part of: sequence
location: 741975..742048
location: region:741975-742048:1
so has part: feature:741975-742048:1:region

position:741975:1
position: 741975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:742048:1
position: 742048
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:741975-742048:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: similar to chloroplast SSC region from ndhF to ndhG
so part of: sequence
location: 750315..755057
location: region:750315-755057:1
so has part: feature:750315-755057:1:region

position:750315:1
position: 750315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:755057:1
position: 755057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:750315-755057:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: similar to chloroplast SSC region from ycf1 to ndhA
so part of: sequence
location: 755070..757801
location: region:755070-757801:1
so has part: feature:755070-757801:1:region

position:755070:1
position: 755070
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:757801:1
position: 757801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:755070-757801:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: similar to chloroplast IR region from rps12-trnV spacer to ycf2
so part of: sequence
location: 763073..768766
location: region:763073-768766:1
so has part: feature:763073-768766:1:region

position:763073:1
position: 763073
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:768766:1
position: 768766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:763073-768766:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: putative trnL(CAA)-cp with anticodon CAA; intact chloroplast-like trnL embedded within larger region of chloroplast DNA; possibly functional
so part of: sequence
location: 766547..766627
location: region:766547-766627:1
so has part: feature:766547-766627:1:region

position:766547:1
position: 766547
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:766627:1
position: 766627
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:766547-766627:1:region

CupepM_t07
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: trnF(GAA)
locus tag: CupepM_t07
so part of: sequence
location: 772934..773007
location: region:772934-773007:1
so has part: feature:772934-773007:1:exon
subclass of: SO_0000663

9072824
type: Gene
SIO_000068: ncbigene

position:772934:1
position: 772934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:773007:1
position: 773007
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:772934-773007:1:exon

CupepM_t07
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3663
gene: trnF(GAA)
locus tag: CupepM_t07
product: tRNA-Phe
SIO_010081: CupepM_t07
subclass of: SO_0000673
so part of: CupepM_t07
location: 772934..773007
location: region:772934-773007:1
so has part: feature:772934-773007:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:772934-773007:1:exon

CupepM_t08
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: trnP(TGG)
locus tag: CupepM_t08
so part of: sequence
location: 773199..773273
location: region:773199-773273:1
so has part: feature:773199-773273:1:exon
subclass of: SO_0000663

9072864
type: Gene
SIO_000068: ncbigene

position:773199:1
position: 773199
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:773273:1
position: 773273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:773199-773273:1:exon

CupepM_t08
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3663
gene: trnP(TGG)
locus tag: CupepM_t08
product: tRNA-Pro
SIO_010081: CupepM_t08
subclass of: SO_0000673
so part of: CupepM_t08
location: 773199..773273
location: region:773199-773273:1
so has part: feature:773199-773273:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:773199-773273:1:exon

CupepM_p26
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: rps7
locus tag: CupepM_p26
so part of: sequence
location: 785600..786046
location: region:785600-786046:1
so has part: feature:785600-786046:1:exon
subclass of: SO_0000010

9072865
type: Gene
SIO_000068: ncbigene

position:785600:1
position: 785600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:786046:1
position: 786046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:785600-786046:1:exon

CupepM_p26
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3663
gene: rps7
locus tag: CupepM_p26
exception: RNA editing
codon start: 1
product: ribosomal protein S7
translation: MGGLDGEQKQLIKKLVNFRMKEGKRTRVRAIVYQTFHRLAQTERDVIKLMVDAVDNIKPICEVEKVGVAGTLYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCLFAEILDAYRKRGIARQKRENLHRLASTNRSFAHFRWW
SIO_010081: CupepM_p26
subclass of: SO_0000673
so part of: CupepM_p26
location: 785600..786046
location: region:785600-786046:1
so has part: feature:785600-786046:1:exon

YP_003587368.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:785600-786046:1:exon

CupepM_p26
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps7
locus tag: CupepM_p26
note: partial C to U RNA editing; CCA(P) to CYA(P/L)
SIO_010081: CupepM_p26
subclass of: SO_0000673
so part of: CupepM_p26
location: 785715
location: region:785715-785715:1
so has part: feature:785715-785715:1:exon

position:785715:1
position: 785715
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:785715-785715:1:exon

CupepM_p26
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps7
locus tag: CupepM_p26
note: partial C to U RNA editing; UAC(Y) to UAY(Y)
SIO_010081: CupepM_p26
subclass of: SO_0000673
so part of: CupepM_p26
location: 785908
location: region:785908-785908:1
so has part: feature:785908-785908:1:exon

position:785908:1
position: 785908
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:785908-785908:1:exon

CupepM_p26
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps7
locus tag: CupepM_p26
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p26
subclass of: SO_0000673
so part of: CupepM_p26
location: 785931
location: region:785931-785931:1
so has part: feature:785931-785931:1:exon

position:785931:1
position: 785931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:785931-785931:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: similar to LSC/IRA region rps3 to rpl23
so part of: sequence
location: 828171..830493
location: region:828171-830493:1
so has part: feature:828171-830493:1:region

position:828171:1
position: 828171
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:830493:1
position: 830493
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:828171-830493:1:region

CupepM_t09
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: trnK(TTT)
locus tag: CupepM_t09
note: anticodon:TTT
so part of: sequence
location: complement(837609..837681)
location: region:837609-837681:-1
so has part: feature:837609-837681:-1:exon
subclass of: SO_0000663

9072850
type: Gene
SIO_000068: ncbigene

position:837609:-1
position: 837609
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:837681:-1
position: 837681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:837609-837681:-1:exon

CupepM_t09
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3663
gene: trnK(TTT)
locus tag: CupepM_t09
product: tRNA-Lys
SIO_010081: CupepM_t09
subclass of: SO_0000673
so part of: CupepM_t09
location: complement(837609..837681)
location: region:837609-837681:-1
so has part: feature:837609-837681:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:837609-837681:-1:exon

CupepM_p27
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: ccmB
locus tag: CupepM_p27
so part of: sequence
location: 840046..840666
location: region:840046-840666:1
so has part: feature:840046-840666:1:exon
subclass of: SO_0000010

9072860
type: Gene
SIO_000068: ncbigene

position:840046:1
position: 840046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:840666:1
position: 840666
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:840046-840666:1:exon

CupepM_p27
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3663
gene: ccmB
locus tag: CupepM_p27
exception: RNA editing
codon start: 1
product: cytochrome c biogenesis B
translation: MRRLFLSLFHKRIFSSTPITSFSLFLLYIVVTPLMLGFEKDFLCHFHLGLIWISLLFSFLSAPFLRNEKEDGTLELYYLSAYCLPKILLLQLVGHWVIQISCVFSGFPMFKLLYQFGRSGMDWLNILLGSLVLTLMCGIHSCLALGITSSRGWNSLQNLTTLPTLLPLTLFCTSIETEWFHVLLLIGYFFLFVSLFPIAVSISLQD
SIO_010081: CupepM_p27
subclass of: SO_0000673
so part of: CupepM_p27
location: 840046..840666
location: region:840046-840666:1
so has part: feature:840046-840666:1:exon

YP_003587369.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:840046-840666:1:exon

CupepM_p27
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmB
locus tag: CupepM_p27
note: C to U RNA editing; CCC(P) to UCC(S)
SIO_010081: CupepM_p27
subclass of: SO_0000673
so part of: CupepM_p27
location: 840088
location: region:840088-840088:1
so has part: feature:840088-840088:1:exon

position:840088:1
position: 840088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:840088-840088:1:exon

CupepM_p27
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmB
locus tag: CupepM_p27
note: C to U RNA editing; CCA(P) to CUA(L)
SIO_010081: CupepM_p27
subclass of: SO_0000673
so part of: CupepM_p27
location: 840116
location: region:840116-840116:1
so has part: feature:840116-840116:1:exon

position:840116:1
position: 840116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:840116-840116:1:exon

CupepM_p27
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmB
locus tag: CupepM_p27
note: C to U RNA editing; UCG(S) to UUG(L)
SIO_010081: CupepM_p27
subclass of: SO_0000673
so part of: CupepM_p27
location: 840125
location: region:840125-840125:1
so has part: feature:840125-840125:1:exon

position:840125:1
position: 840125
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:840125-840125:1:exon

CupepM_p27
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmB
locus tag: CupepM_p27
note: C to U RNA editing; AUC(I) to AUU(I)
SIO_010081: CupepM_p27
subclass of: SO_0000673
so part of: CupepM_p27
location: 840132
location: region:840132-840132:1
so has part: feature:840132-840132:1:exon

position:840132:1
position: 840132
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:840132-840132:1:exon

CupepM_p27
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmB
locus tag: CupepM_p27
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p27
subclass of: SO_0000673
so part of: CupepM_p27
location: 840173
location: region:840173-840173:1
so has part: feature:840173-840173:1:exon

position:840173:1
position: 840173
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:840173-840173:1:exon

CupepM_p27
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmB
locus tag: CupepM_p27
note: C to U RNA editing; UCC(S) to UUC(F)
SIO_010081: CupepM_p27
subclass of: SO_0000673
so part of: CupepM_p27
location: 840182
location: region:840182-840182:1
so has part: feature:840182-840182:1:exon

position:840182:1
position: 840182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:840182-840182:1:exon

CupepM_p27
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmB
locus tag: CupepM_p27
note: C to U RNA editing; CCG(P) to UUG(L)
SIO_010081: CupepM_p27
subclass of: SO_0000673
so part of: CupepM_p27
location: 840193
location: region:840193-840193:1
so has part: feature:840193-840193:1:exon

position:840193:1
position: 840193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:840193-840193:1:exon

CupepM_p27
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmB
locus tag: CupepM_p27
note: C to U RNA editing; CCG(P) to UUG(L)
SIO_010081: CupepM_p27
subclass of: SO_0000673
so part of: CupepM_p27
location: 840194
location: region:840194-840194:1
so has part: feature:840194-840194:1:exon

position:840194:1
position: 840194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:840194-840194:1:exon

CupepM_p27
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmB
locus tag: CupepM_p27
note: C to U RNA editing; CGG(R) to UGG(W)
SIO_010081: CupepM_p27
subclass of: SO_0000673
so part of: CupepM_p27
location: 840199
location: region:840199-840199:1
so has part: feature:840199-840199:1:exon

position:840199:1
position: 840199
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:840199-840199:1:exon

CupepM_p27
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmB
locus tag: CupepM_p27
note: C to U RNA editing; CCU(P) to UCU(S)
SIO_010081: CupepM_p27
subclass of: SO_0000673
so part of: CupepM_p27
location: 840205
location: region:840205-840205:1
so has part: feature:840205-840205:1:exon

position:840205:1
position: 840205
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:840205-840205:1:exon

CupepM_p27
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmB
locus tag: CupepM_p27
note: C to U RNA editing; CCU(P) to UCU(S)
SIO_010081: CupepM_p27
subclass of: SO_0000673
so part of: CupepM_p27
location: 840217
location: region:840217-840217:1
so has part: feature:840217-840217:1:exon

position:840217:1
position: 840217
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:840217-840217:1:exon

CupepM_p27
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmB
locus tag: CupepM_p27
note: C to U RNA editing; CCU(P) to CUU(L)
SIO_010081: CupepM_p27
subclass of: SO_0000673
so part of: CupepM_p27
location: 840224
location: region:840224-840224:1
so has part: feature:840224-840224:1:exon

position:840224:1
position: 840224
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:840224-840224:1:exon

CupepM_p27
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmB
locus tag: CupepM_p27
note: C to U RNA editing; CCC(P) to UCC(S)
SIO_010081: CupepM_p27
subclass of: SO_0000673
so part of: CupepM_p27
location: 840226
location: region:840226-840226:1
so has part: feature:840226-840226:1:exon

position:840226:1
position: 840226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:840226-840226:1:exon

CupepM_p27
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmB
locus tag: CupepM_p27
note: C to U RNA editing; CCU(P) to CUU(L)
SIO_010081: CupepM_p27
subclass of: SO_0000673
so part of: CupepM_p27
location: 840239
location: region:840239-840239:1
so has part: feature:840239-840239:1:exon

position:840239:1
position: 840239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:840239-840239:1:exon

CupepM_p27
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmB
locus tag: CupepM_p27
note: C to U RNA editing; CGG(R) to UGG(W)
SIO_010081: CupepM_p27
subclass of: SO_0000673
so part of: CupepM_p27
location: 840331
location: region:840331-840331:1
so has part: feature:840331-840331:1:exon

position:840331:1
position: 840331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:840331-840331:1:exon

CupepM_p27
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmB
locus tag: CupepM_p27
note: partial C to U RNA editing; CUG(L) to YUG(L)
SIO_010081: CupepM_p27
subclass of: SO_0000673
so part of: CupepM_p27
location: 840382
location: region:840382-840382:1
so has part: feature:840382-840382:1:exon

position:840382:1
position: 840382
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:840382-840382:1:exon

CupepM_p27
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmB
locus tag: CupepM_p27
note: C to U RNA editing; CGG(R) to UGG(W)
SIO_010081: CupepM_p27
subclass of: SO_0000673
so part of: CupepM_p27
location: 840412
location: region:840412-840412:1
so has part: feature:840412-840412:1:exon

position:840412:1
position: 840412
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:840412-840412:1:exon

CupepM_p27
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmB
locus tag: CupepM_p27
note: C to U RNA editing; CUA(L) to UUA(L)
SIO_010081: CupepM_p27
subclass of: SO_0000673
so part of: CupepM_p27
location: 840424
location: region:840424-840424:1
so has part: feature:840424-840424:1:exon

position:840424:1
position: 840424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:840424-840424:1:exon

CupepM_p27
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmB
locus tag: CupepM_p27
note: C to U RNA editing; CGU(R) to UGU(C)
SIO_010081: CupepM_p27
subclass of: SO_0000673
so part of: CupepM_p27
location: 840469
location: region:840469-840469:1
so has part: feature:840469-840469:1:exon

position:840469:1
position: 840469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:840469-840469:1:exon

CupepM_p27
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmB
locus tag: CupepM_p27
note: C to U RNA editing; UCG(S) to UUG(L)
SIO_010081: CupepM_p27
subclass of: SO_0000673
so part of: CupepM_p27
location: 840473
location: region:840473-840473:1
so has part: feature:840473-840473:1:exon

position:840473:1
position: 840473
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:840473-840473:1:exon

CupepM_p27
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmB
locus tag: CupepM_p27
note: C to U RNA editing; UCG(S) to UUG(L)
SIO_010081: CupepM_p27
subclass of: SO_0000673
so part of: CupepM_p27
location: 840512
location: region:840512-840512:1
so has part: feature:840512-840512:1:exon

position:840512:1
position: 840512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:840512-840512:1:exon

CupepM_p27
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmB
locus tag: CupepM_p27
note: C to U RNA editing; CCA(P) to CUA(L)
SIO_010081: CupepM_p27
subclass of: SO_0000673
so part of: CupepM_p27
location: 840521
location: region:840521-840521:1
so has part: feature:840521-840521:1:exon

position:840521:1
position: 840521
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:840521-840521:1:exon

CupepM_p27
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmB
locus tag: CupepM_p27
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p27
subclass of: SO_0000673
so part of: CupepM_p27
location: 840530
location: region:840530-840530:1
so has part: feature:840530-840530:1:exon

position:840530:1
position: 840530
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:840530-840530:1:exon

CupepM_p27
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmB
locus tag: CupepM_p27
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p27
subclass of: SO_0000673
so part of: CupepM_p27
location: 840539
location: region:840539-840539:1
so has part: feature:840539-840539:1:exon

position:840539:1
position: 840539
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:840539-840539:1:exon

CupepM_p27
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmB
locus tag: CupepM_p27
note: C to U RNA editing; CCA(P) to UUA(L)
SIO_010081: CupepM_p27
subclass of: SO_0000673
so part of: CupepM_p27
location: 840547
location: region:840547-840547:1
so has part: feature:840547-840547:1:exon

position:840547:1
position: 840547
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:840547-840547:1:exon

CupepM_p27
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmB
locus tag: CupepM_p27
note: C to U RNA editing; CCA(P) to UUA(L)
SIO_010081: CupepM_p27
subclass of: SO_0000673
so part of: CupepM_p27
location: 840548
location: region:840548-840548:1
so has part: feature:840548-840548:1:exon

position:840548:1
position: 840548
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:840548-840548:1:exon

CupepM_p27
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmB
locus tag: CupepM_p27
note: C to U RNA editing; UCU(S) to UUU(F)
SIO_010081: CupepM_p27
subclass of: SO_0000673
so part of: CupepM_p27
location: 840557
location: region:840557-840557:1
so has part: feature:840557-840557:1:exon

position:840557:1
position: 840557
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:840557-840557:1:exon

CupepM_p27
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmB
locus tag: CupepM_p27
note: C to U RNA editing; CGU(R) to UGU(C)
SIO_010081: CupepM_p27
subclass of: SO_0000673
so part of: CupepM_p27
location: 840559
location: region:840559-840559:1
so has part: feature:840559-840559:1:exon

position:840559:1
position: 840559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:840559-840559:1:exon

CupepM_p27
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmB
locus tag: CupepM_p27
note: C to U RNA editing; CCU(P) to CUU(L)
SIO_010081: CupepM_p27
subclass of: SO_0000673
so part of: CupepM_p27
location: 840593
location: region:840593-840593:1
so has part: feature:840593-840593:1:exon

position:840593:1
position: 840593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:840593-840593:1:exon

CupepM_p27
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmB
locus tag: CupepM_p27
note: C to U RNA editing; UCG(S) to UUG(L)
SIO_010081: CupepM_p27
subclass of: SO_0000673
so part of: CupepM_p27
location: 840599
location: region:840599-840599:1
so has part: feature:840599-840599:1:exon

position:840599:1
position: 840599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:840599-840599:1:exon

CupepM_p27
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmB
locus tag: CupepM_p27
note: C to U RNA editing; UCC(S) to UUC(F)
SIO_010081: CupepM_p27
subclass of: SO_0000673
so part of: CupepM_p27
location: 840611
location: region:840611-840611:1
so has part: feature:840611-840611:1:exon

position:840611:1
position: 840611
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:840611-840611:1:exon

CupepM_p27
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmB
locus tag: CupepM_p27
note: C to U RNA editing; UCC(S) to UUC(F)
SIO_010081: CupepM_p27
subclass of: SO_0000673
so part of: CupepM_p27
location: 840614
location: region:840614-840614:1
so has part: feature:840614-840614:1:exon

position:840614:1
position: 840614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:840614-840614:1:exon

CupepM_p27
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: ccmB
locus tag: CupepM_p27
note: C to U RNA editing; CCG(P) to CUG(L)
SIO_010081: CupepM_p27
subclass of: SO_0000673
so part of: CupepM_p27
location: 840617
location: region:840617-840617:1
so has part: feature:840617-840617:1:exon

position:840617:1
position: 840617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:840617-840617:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: similar to chloroplast IR region from rps7 to rps12-trnV spacer
so part of: sequence
location: 848217..849548
location: region:848217-849548:1
so has part: feature:848217-849548:1:region

position:848217:1
position: 848217
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:849548:1
position: 849548
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:848217-849548:1:region

CupepM_t10
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: trnI(CAT)
locus tag: CupepM_t10
so part of: sequence
location: 873779..873859
location: region:873779-873859:1
so has part: feature:873779-873859:1:exon
subclass of: SO_0000663

9072822
type: Gene
SIO_000068: ncbigene

position:873779:1
position: 873779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:873859:1
position: 873859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:873779-873859:1:exon

CupepM_t10
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3663
gene: trnI(CAT)
locus tag: CupepM_t10
product: tRNA-Ile
note: C assumed to be post-transcriptionally modified to lysidine, which pairs with A, not G (see PubMed ID 1698276)
SIO_010081: CupepM_t10
subclass of: SO_0000673
so part of: CupepM_t10
location: 873779..873859
location: region:873779-873859:1
so has part: feature:873779-873859:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:873779-873859:1:exon

CupepM_p28
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: mttB
locus tag: CupepM_p28
note: synonyms: orfX, tatC, ymf16
so part of: sequence
location: complement(877586..>878401)
location: region:877586-878401:-1
so has part: feature:877586-878401:-1:exon
subclass of: SO_0000010

9072863
type: Gene
SIO_000068: ncbigene

position:877586:-1
position: 877586
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:878401:-1
position: 878401
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:877586-878401:-1:exon

CupepM_p28
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3663
gene: mttB
locus tag: CupepM_p28
exception: RNA editing
note: start codon not determined
codon start: 1
product: transport membrane protein
translation: ESNPIYPLNYSTISYEFHFAPETILGEVRIRFVWILIGLGLTWFTCYWFSEELIFLLAKPFLTLPLDSYLVCTQLTEAFSTYLAMSSIACSYFVFPLISYQIWCFLIPSCYGEQRTKYNRFFYLSGFCFFLFLFLTFSWVVPNVWHFLYSVGATSTNLLILKLQPKIYDYIMLTVRILFILSVCSQVPVIVICLLELRGLSVETFTNNRRFLMVFSLFTAALSTPPDIWCQIVACFLISLIIELAIFVALIVQVREEGWTSGMRESGSIDK
SIO_010081: CupepM_p28
subclass of: SO_0000673
so part of: CupepM_p28
location: complement(877586..>878401)
location: region:877586-878401:-1
so has part: feature:877586-878401:-1:exon

YP_003587370.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:877586-878401:-1:exon

CupepM_p28
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: mttB
locus tag: CupepM_p28
note: C to U RNA editing; UCG(S) to UUG(L)
SIO_010081: CupepM_p28
subclass of: SO_0000673
so part of: CupepM_p28
location: complement(877653)
location: region:877653-877653:-1
so has part: feature:877653-877653:-1:exon

position:877653:-1
position: 877653
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:877653-877653:-1:exon

CupepM_p28
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: mttB
locus tag: CupepM_p28
note: C to U RNA editing; CGU(R) to UGU(C)
SIO_010081: CupepM_p28
subclass of: SO_0000673
so part of: CupepM_p28
location: complement(877699)
location: region:877699-877699:-1
so has part: feature:877699-877699:-1:exon

position:877699:-1
position: 877699
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:877699-877699:-1:exon

CupepM_p28
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: mttB
locus tag: CupepM_p28
note: C to U RNA editing; CCG(P) to UCG(S)
SIO_010081: CupepM_p28
subclass of: SO_0000673
so part of: CupepM_p28
location: complement(877756)
location: region:877756-877756:-1
so has part: feature:877756-877756:-1:exon

position:877756:-1
position: 877756
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:877756-877756:-1:exon

CupepM_p28
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: mttB
locus tag: CupepM_p28
note: C to U RNA editing; CCA(P) to CUA(L)
SIO_010081: CupepM_p28
subclass of: SO_0000673
so part of: CupepM_p28
location: complement(877818)
location: region:877818-877818:-1
so has part: feature:877818-877818:-1:exon

position:877818:-1
position: 877818
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:877818-877818:-1:exon

CupepM_p28
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: mttB
locus tag: CupepM_p28
note: C to U RNA editing; UCG(S) to UUG(L)
SIO_010081: CupepM_p28
subclass of: SO_0000673
so part of: CupepM_p28
location: complement(877869)
location: region:877869-877869:-1
so has part: feature:877869-877869:-1:exon

position:877869:-1
position: 877869
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:877869-877869:-1:exon

CupepM_p28
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: mttB
locus tag: CupepM_p28
note: C to U RNA editing; CAU(H) to UAU(Y)
SIO_010081: CupepM_p28
subclass of: SO_0000673
so part of: CupepM_p28
location: complement(877894)
location: region:877894-877894:-1
so has part: feature:877894-877894:-1:exon

position:877894:-1
position: 877894
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:877894-877894:-1:exon

CupepM_p28
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: mttB
locus tag: CupepM_p28
note: C to U RNA editing; UCG(S) to UUG(L)
SIO_010081: CupepM_p28
subclass of: SO_0000673
so part of: CupepM_p28
location: complement(877929)
location: region:877929-877929:-1
so has part: feature:877929-877929:-1:exon

position:877929:-1
position: 877929
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:877929-877929:-1:exon

CupepM_p28
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: mttB
locus tag: CupepM_p28
note: C to U RNA editing; CCA(P) to CUA(L)
SIO_010081: CupepM_p28
subclass of: SO_0000673
so part of: CupepM_p28
location: complement(877959)
location: region:877959-877959:-1
so has part: feature:877959-877959:-1:exon

position:877959:-1
position: 877959
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:877959-877959:-1:exon

CupepM_p28
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: mttB
locus tag: CupepM_p28
note: C to U RNA editing; CGG(R) to UGG(W)
SIO_010081: CupepM_p28
subclass of: SO_0000673
so part of: CupepM_p28
location: complement(877987)
location: region:877987-877987:-1
so has part: feature:877987-877987:-1:exon

position:877987:-1
position: 877987
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:877987-877987:-1:exon

CupepM_p28
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: mttB
locus tag: CupepM_p28
note: partial C to U RNA editing; CCC(P) to YCC(P/S)
SIO_010081: CupepM_p28
subclass of: SO_0000673
so part of: CupepM_p28
location: complement(877990)
location: region:877990-877990:-1
so has part: feature:877990-877990:-1:exon

position:877990:-1
position: 877990
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:877990-877990:-1:exon

CupepM_p28
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: mttB
locus tag: CupepM_p28
note: partial C to U RNA editing; CUU(L) to YUU(L/F)
SIO_010081: CupepM_p28
subclass of: SO_0000673
so part of: CupepM_p28
location: complement(877993)
location: region:877993-877993:-1
so has part: feature:877993-877993:-1:exon

position:877993:-1
position: 877993
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:877993-877993:-1:exon

CupepM_p28
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: mttB
locus tag: CupepM_p28
note: partial C to U RNA editing; UUC(F) to UUY(F)
SIO_010081: CupepM_p28
subclass of: SO_0000673
so part of: CupepM_p28
location: complement(878006)
location: region:878006-878006:-1
so has part: feature:878006-878006:-1:exon

position:878006:-1
position: 878006
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:878006-878006:-1:exon

CupepM_p28
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: mttB
locus tag: CupepM_p28
note: partial C to U RNA editing; UCC(S) to UYC(S/F)
SIO_010081: CupepM_p28
subclass of: SO_0000673
so part of: CupepM_p28
location: complement(878013)
location: region:878013-878013:-1
so has part: feature:878013-878013:-1:exon

position:878013:-1
position: 878013
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:878013-878013:-1:exon

CupepM_p28
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: mttB
locus tag: CupepM_p28
note: C to U RNA editing; CGC(R) to UGC(C)
SIO_010081: CupepM_p28
subclass of: SO_0000673
so part of: CupepM_p28
location: complement(878020)
location: region:878020-878020:-1
so has part: feature:878020-878020:-1:exon

position:878020:-1
position: 878020
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:878020-878020:-1:exon

CupepM_p28
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: mttB
locus tag: CupepM_p28
note: partial C to U RNA editing; UCU(S) to UYU(S/F)
SIO_010081: CupepM_p28
subclass of: SO_0000673
so part of: CupepM_p28
location: complement(878022)
location: region:878022-878022:-1
so has part: feature:878022-878022:-1:exon

position:878022:-1
position: 878022
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:878022-878022:-1:exon

CupepM_p28
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: mttB
locus tag: CupepM_p28
note: C to U RNA editing; CUC(L) to UUC(F)
SIO_010081: CupepM_p28
subclass of: SO_0000673
so part of: CupepM_p28
location: complement(878038)
location: region:878038-878038:-1
so has part: feature:878038-878038:-1:exon

position:878038:-1
position: 878038
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:878038-878038:-1:exon

CupepM_p28
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: mttB
locus tag: CupepM_p28
note: C to U RNA editing; CAU(H) to UAU(Y)
SIO_010081: CupepM_p28
subclass of: SO_0000673
so part of: CupepM_p28
location: complement(878104)
location: region:878104-878104:-1
so has part: feature:878104-878104:-1:exon

position:878104:-1
position: 878104
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:878104-878104:-1:exon

CupepM_p28
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: mttB
locus tag: CupepM_p28
note: partial C to U RNA editing; CCU(P) to YCU(P/S)
SIO_010081: CupepM_p28
subclass of: SO_0000673
so part of: CupepM_p28
location: complement(878164)
location: region:878164-878164:-1
so has part: feature:878164-878164:-1:exon

position:878164:-1
position: 878164
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:878164-878164:-1:exon

CupepM_p28
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: mttB
locus tag: CupepM_p28
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p28
subclass of: SO_0000673
so part of: CupepM_p28
location: complement(878178)
location: region:878178-878178:-1
so has part: feature:878178-878178:-1:exon

position:878178:-1
position: 878178
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:878178-878178:-1:exon

CupepM_p28
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: mttB
locus tag: CupepM_p28
note: C to U RNA editing; CCA(P) to CUA(L)
SIO_010081: CupepM_p28
subclass of: SO_0000673
so part of: CupepM_p28
location: complement(878235)
location: region:878235-878235:-1
so has part: feature:878235-878235:-1:exon

position:878235:-1
position: 878235
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:878235-878235:-1:exon

CupepM_p28
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: mttB
locus tag: CupepM_p28
note: C to U RNA editing; UCU(S) to UUU(F)
SIO_010081: CupepM_p28
subclass of: SO_0000673
so part of: CupepM_p28
location: complement(878238)
location: region:878238-878238:-1
so has part: feature:878238-878238:-1:exon

position:878238:-1
position: 878238
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:878238-878238:-1:exon

CupepM_p28
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: mttB
locus tag: CupepM_p28
note: C to U RNA editing; CCG(P) to UCG(S)
SIO_010081: CupepM_p28
subclass of: SO_0000673
so part of: CupepM_p28
location: complement(878254)
location: region:878254-878254:-1
so has part: feature:878254-878254:-1:exon

position:878254:-1
position: 878254
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:878254-878254:-1:exon

CupepM_p28
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: mttB
locus tag: CupepM_p28
note: C to U RNA editing; UUC(F) to UUU(F)
SIO_010081: CupepM_p28
subclass of: SO_0000673
so part of: CupepM_p28
location: complement(878255)
location: region:878255-878255:-1
so has part: feature:878255-878255:-1:exon

position:878255:-1
position: 878255
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:878255-878255:-1:exon

CupepM_p28
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: mttB
locus tag: CupepM_p28
note: C to U RNA editing; CGU(R) to UGU(C)
SIO_010081: CupepM_p28
subclass of: SO_0000673
so part of: CupepM_p28
location: complement(878266)
location: region:878266-878266:-1
so has part: feature:878266-878266:-1:exon

position:878266:-1
position: 878266
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:878266-878266:-1:exon

CupepM_p28
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: mttB
locus tag: CupepM_p28
note: partial C to U RNA editing; AUC(I) to AUY(I)
SIO_010081: CupepM_p28
subclass of: SO_0000673
so part of: CupepM_p28
location: complement(878291)
location: region:878291-878291:-1
so has part: feature:878291-878291:-1:exon

position:878291:-1
position: 878291
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:878291-878291:-1:exon

CupepM_p28
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: mttB
locus tag: CupepM_p28
note: C to U RNA editing; CGG(R) to UGG(W)
SIO_010081: CupepM_p28
subclass of: SO_0000673
so part of: CupepM_p28
location: complement(878302)
location: region:878302-878302:-1
so has part: feature:878302-878302:-1:exon

position:878302:-1
position: 878302
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:878302-878302:-1:exon

CupepM_p28
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: mttB
locus tag: CupepM_p28
note: partial C to U RNA editing; CUA(L) to YUA(L)
SIO_010081: CupepM_p28
subclass of: SO_0000673
so part of: CupepM_p28
location: complement(878329)
location: region:878329-878329:-1
so has part: feature:878329-878329:-1:exon

position:878329:-1
position: 878329
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:878329-878329:-1:exon

CupepM_r02
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: rrn18
locus tag: CupepM_r02
so part of: sequence
location: 880559..882411
location: region:880559-882411:1
so has part: feature:880559-882411:1:exon
subclass of: SO_0000573

9072830
type: Gene
SIO_000068: ncbigene

position:880559:1
position: 880559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:882411:1
position: 882411
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:880559-882411:1:exon

CupepM_r02
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 3663
gene: rrn18
locus tag: CupepM_r02
product: 18S ribosomal RNA
SIO_010081: CupepM_r02
subclass of: SO_0000673
so part of: CupepM_r02
location: 880559..882411
location: region:880559-882411:1
so has part: feature:880559-882411:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:880559-882411:1:exon

CupepM_r03
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: rrn5
locus tag: CupepM_r03
so part of: sequence
location: 883003..883121
location: region:883003-883121:1
so has part: feature:883003-883121:1:exon
subclass of: SO_0000573

9072867
type: Gene
SIO_000068: ncbigene

position:883003:1
position: 883003
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:883121:1
position: 883121
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:883003-883121:1:exon

CupepM_r03
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 3663
gene: rrn5
locus tag: CupepM_r03
product: 5S ribosomal RNA
SIO_010081: CupepM_r03
subclass of: SO_0000673
so part of: CupepM_r03
location: 883003..883121
location: region:883003-883121:1
so has part: feature:883003-883121:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:883003-883121:1:exon

CupepM_p29
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: nad6
locus tag: CupepM_p29
so part of: sequence
location: complement(944593..945210)
location: region:944593-945210:-1
so has part: feature:944593-945210:-1:exon
subclass of: SO_0000010

9072869
type: Gene
SIO_000068: ncbigene

position:944593:-1
position: 944593
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:945210:-1
position: 945210
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:944593-945210:-1:exon

CupepM_p29
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3663
gene: nad6
locus tag: CupepM_p29
codon start: 1
product: NADH dehydrogenase subunit 6
translation: MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQIAEIHESVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSLRYTVYAEKVRSWTNLETLGNLLYTYYSVWFLLSSLILLVAMIGAIVLTMHRTTKVKRQDLFRRNAIDFRRTIMRRTTDPLTIY
SIO_010081: CupepM_p29
subclass of: SO_0000673
so part of: CupepM_p29
location: complement(944593..945210)
location: region:944593-945210:-1
so has part: feature:944593-945210:-1:exon

YP_003587371.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:944593-945210:-1:exon

CupepM_p30
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: rps4
locus tag: CupepM_p30
so part of: sequence
location: complement(945806..946876)
location: region:945806-946876:-1
so has part: feature:945806-946876:-1:exon
subclass of: SO_0000010

9072837
type: Gene
SIO_000068: ncbigene

position:945806:-1
position: 945806
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:946876:-1
position: 946876
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:945806-946876:-1:exon

CupepM_p30
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3663
gene: rps4
locus tag: CupepM_p30
exception: RNA editing
note: predicted C to U RNA editing creates start codon
codon start: 1
product: ribosomal protein S4
translation: MDSTRYALPALRFKTCRLLLGNVWNRELTIIQRRILRKLRNKRRSIKRKIYSRENLNSYIQLQTTRKLSLFYGDLPITEMHRGRERTNYIPFLLNLETRLDVILVRLHFSSTLPQARQLISHRRVCVNKGMVPITHFKVSHGDLISLKENDARIRGEEIRRSFYIEISVEKIIGKFLDHPVRMWRRTKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQESDLERRKKLFGSDKVCLGCSFAEHNRMKRNLYHFQSLFLSNRRKEKNRNLPTRRISPIVYNSSLYSNYTYCSASPHQFTMKSKIKRIELPTHYLEVNYRTLKAVVSYGPKIGHIPHDIRLKDPNLPLRSANGRGQNI
SIO_010081: CupepM_p30
subclass of: SO_0000673
so part of: CupepM_p30
location: complement(945806..946876)
location: region:945806-946876:-1
so has part: feature:945806-946876:-1:exon

YP_003587372.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:945806-946876:-1:exon

CupepM_p30
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps4
locus tag: CupepM_p30
note: partial C to U RNA editing; CAU(H) to YAU(H/Y)
SIO_010081: CupepM_p30
subclass of: SO_0000673
so part of: CupepM_p30
location: complement(945928)
location: region:945928-945928:-1
so has part: feature:945928-945928:-1:exon

position:945928:-1
position: 945928
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:945928-945928:-1:exon

CupepM_p30
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps4
locus tag: CupepM_p30
note: partial C to U RNA editing; UCG(S) to UYG(S/L)
SIO_010081: CupepM_p30
subclass of: SO_0000673
so part of: CupepM_p30
location: complement(945939)
location: region:945939-945939:-1
so has part: feature:945939-945939:-1:exon

position:945939:-1
position: 945939
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:945939-945939:-1:exon

CupepM_p30
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps4
locus tag: CupepM_p30
note: C to U RNA editing; CCG(P) to CUG(L)
SIO_010081: CupepM_p30
subclass of: SO_0000673
so part of: CupepM_p30
location: complement(946521)
location: region:946521-946521:-1
so has part: feature:946521-946521:-1:exon

position:946521:-1
position: 946521
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:946521-946521:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: partial C to U RNA editing; CCG(P) to CYG(P/L)
so part of: sequence
location: 946566
location: region:946566-946566:1
so has part: feature:946566-946566:1:region

position:946566:1
position: 946566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:946566-946566:1:region

CupepM_p30
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps4
locus tag: CupepM_p30
note: partial C to U RNA editing; UCG(S) to UYG(S/L)
SIO_010081: CupepM_p30
subclass of: SO_0000673
so part of: CupepM_p30
location: complement(946578)
location: region:946578-946578:-1
so has part: feature:946578-946578:-1:exon

position:946578:-1
position: 946578
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:946578-946578:-1:exon

CupepM_p30
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps4
locus tag: CupepM_p30
note: partial C to U RNA editing; CCA(P) to CYA(P/L)
SIO_010081: CupepM_p30
subclass of: SO_0000673
so part of: CupepM_p30
location: complement(946590)
location: region:946590-946590:-1
so has part: feature:946590-946590:-1:exon

position:946590:-1
position: 946590
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:946590-946590:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: partial C to U RNA editing; CCA(P) to CYA(P/L)
so part of: sequence
location: 946599
location: region:946599-946599:1
so has part: feature:946599-946599:1:region

position:946599:1
position: 946599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:946599-946599:1:region

CupepM_p30
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps4
locus tag: CupepM_p30
note: partial C to U RNA editing; CAU(H) to YAU(H/Y)
SIO_010081: CupepM_p30
subclass of: SO_0000673
so part of: CupepM_p30
location: complement(946663)
location: region:946663-946663:-1
so has part: feature:946663-946663:-1:exon

position:946663:-1
position: 946663
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:946663-946663:-1:exon

CupepM_p30
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps4
locus tag: CupepM_p30
note: partial C to U RNA editing; CCC(P) to YCC(P/S)
SIO_010081: CupepM_p30
subclass of: SO_0000673
so part of: CupepM_p30
location: complement(946672)
location: region:946672-946672:-1
so has part: feature:946672-946672:-1:exon

position:946672:-1
position: 946672
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:946672-946672:-1:exon

CupepM_p30
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps4
locus tag: CupepM_p30
note: partial C to U RNA editing; UCA(S) to UYA(S/L)
SIO_010081: CupepM_p30
subclass of: SO_0000673
so part of: CupepM_p30
location: complement(946692)
location: region:946692-946692:-1
so has part: feature:946692-946692:-1:exon

position:946692:-1
position: 946692
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:946692-946692:-1:exon

CupepM_p30
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps4
locus tag: CupepM_p30
note: partial C to U RNA editing; CCG(P) to YCG(P/S)
SIO_010081: CupepM_p30
subclass of: SO_0000673
so part of: CupepM_p30
location: complement(946723)
location: region:946723-946723:-1
so has part: feature:946723-946723:-1:exon

position:946723:-1
position: 946723
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:946723-946723:-1:exon

CupepM_p30
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps4
locus tag: CupepM_p30
note: partial C to U RNA editing; CGG(R) to YGG(R/W)
SIO_010081: CupepM_p30
subclass of: SO_0000673
so part of: CupepM_p30
location: complement(946807)
location: region:946807-946807:-1
so has part: feature:946807-946807:-1:exon

position:946807:-1
position: 946807
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:946807-946807:-1:exon

CupepM_p31
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: atp8
locus tag: CupepM_p31
so part of: sequence
location: 949095..949577
location: region:949095-949577:1
so has part: feature:949095-949577:1:exon
subclass of: SO_0000010

9072849
type: Gene
SIO_000068: ncbigene

position:949095:1
position: 949095
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:949577:1
position: 949577
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:949095-949577:1:exon

CupepM_p31
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3663
gene: atp8
locus tag: CupepM_p31
exception: RNA editing
codon start: 1
product: ATPase subunit 8
translation: MPQLDKLTYFTQFFWLCLFFFTFYIFICNDGDGVLGISRILKLRNQLVSHRGNKIRSNDPNSLEDILRKGFSTGVSYMYSSLFEVSQWCNAVDLLGKRRKKITFLSCFGEISGSRGLERNIFYLISKSSYSTSSNPGWGIACRNDIMLIHVLHGQGSIVF
SIO_010081: CupepM_p31
subclass of: SO_0000673
so part of: CupepM_p31
location: 949095..949577
location: region:949095-949577:1
so has part: feature:949095-949577:1:exon

YP_003587373.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:949095-949577:1:exon

CupepM_p31
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: atp8
locus tag: CupepM_p31
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p31
subclass of: SO_0000673
so part of: CupepM_p31
location: 949141
location: region:949141-949141:1
so has part: feature:949141-949141:1:exon

position:949141:1
position: 949141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:949141-949141:1:exon

CupepM_p31
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: atp8
locus tag: CupepM_p31
note: C to U RNA editing; CCC(P) to UYC(S/F)
SIO_010081: CupepM_p31
subclass of: SO_0000673
so part of: CupepM_p31
location: 949170
location: region:949170-949170:1
so has part: feature:949170-949170:1:exon

position:949170:1
position: 949170
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:949170-949170:1:exon

CupepM_p31
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: atp8
locus tag: CupepM_p31
note: partial C to U RNA editing; CCC(P) to UYC(S/F)
SIO_010081: CupepM_p31
subclass of: SO_0000673
so part of: CupepM_p31
location: 949171
location: region:949171-949171:1
so has part: feature:949171-949171:1:exon

position:949171:1
position: 949171
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:949171-949171:1:exon

CupepM_p32
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: cox3
locus tag: CupepM_p32
so part of: sequence
location: 950179..950976
location: region:950179-950976:1
so has part: feature:950179-950976:1:exon
subclass of: SO_0000010

9072820
type: Gene
SIO_000068: ncbigene

position:950179:1
position: 950179
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:950976:1
position: 950976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:950179-950976:1:exon

CupepM_p32
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3663
gene: cox3
locus tag: CupepM_p32
exception: RNA editing
codon start: 1
product: cytochrome c oxidase subunit 3
translation: MIESQRHSFHLVDPSPWPISGSLGALATTVGGVMYMHSFQGGATLISLGLIFILYTMFVWWRDVLRESTLEGHHTKVVQLGLRYGFILFIVSEVMFFLAFFWAFFHSSLAPTVEIGGIWPPKGIGVLDPWEIPFLNTLILLSSGAAVTWAHHAILAGKEKGAVYALVATVLLALVFTGFQGMEYYQAPFTISDSIYGSTFFLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWGGI
SIO_010081: CupepM_p32
subclass of: SO_0000673
so part of: CupepM_p32
location: 950179..950976
location: region:950179-950976:1
so has part: feature:950179-950976:1:exon

YP_003587374.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:950179-950976:1:exon

CupepM_p32
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cox3
locus tag: CupepM_p32
note: C to U RNA editing; CUU(L) to UUU(F)
SIO_010081: CupepM_p32
subclass of: SO_0000673
so part of: CupepM_p32
location: 950467
location: region:950467-950467:1
so has part: feature:950467-950467:1:exon

position:950467:1
position: 950467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:950467-950467:1:exon

CupepM_p32
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cox3
locus tag: CupepM_p32
note: C to U RNA editing; CGG(R) to UGG(W)
SIO_010081: CupepM_p32
subclass of: SO_0000673
so part of: CupepM_p32
location: 950482
location: region:950482-950482:1
so has part: feature:950482-950482:1:exon

position:950482:1
position: 950482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:950482-950482:1:exon

CupepM_p32
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cox3
locus tag: CupepM_p32
note: C to U RNA editing; UCU(S) to UUU(F)
SIO_010081: CupepM_p32
subclass of: SO_0000673
so part of: CupepM_p32
location: 950489
location: region:950489-950489:1
so has part: feature:950489-950489:1:exon

position:950489:1
position: 950489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:950489-950489:1:exon

CupepM_p32
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cox3
locus tag: CupepM_p32
note: C to U RNA editing; UCU(S) to UUU(F)
SIO_010081: CupepM_p32
subclass of: SO_0000673
so part of: CupepM_p32
location: 950492
location: region:950492-950492:1
so has part: feature:950492-950492:1:exon

position:950492:1
position: 950492
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:950492-950492:1:exon

CupepM_p32
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cox3
locus tag: CupepM_p32
note: C to U RNA editing; CGG(R) to UGG(W)
SIO_010081: CupepM_p32
subclass of: SO_0000673
so part of: CupepM_p32
location: 950566
location: region:950566-950566:1
so has part: feature:950566-950566:1:exon

position:950566:1
position: 950566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:950566-950566:1:exon

CupepM_p32
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: cox3
locus tag: CupepM_p32
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p32
subclass of: SO_0000673
so part of: CupepM_p32
location: 950690
location: region:950690-950690:1
so has part: feature:950690-950690:1:exon

position:950690:1
position: 950690
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:950690-950690:1:exon

CupepM_p33
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: sdh4
locus tag: CupepM_p33
so part of: sequence
location: 950904..951290
location: region:950904-951290:1
so has part: feature:950904-951290:1:exon
subclass of: SO_0000010

9072828
type: Gene
SIO_000068: ncbigene

position:950904:1
position: 950904
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:951290:1
position: 951290
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:950904-951290:1:exon

CupepM_p33
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3663
gene: sdh4
locus tag: CupepM_p33
exception: RNA editing
note: predicted C to U RNA editing creates stop codon
codon start: 1
product: succinate dehydrogenase subunit 4
translation: MVLAFCRRGSVIPICLYLLVGRYMKEQNSALRNSSSKTKRTGLFQRITAAFLLPLIIIYKKVSSTFLPNLSVFWHINSGIEEIMADHVHQEMTRNWILVYLRLFLLIVIKDVFLSLISFPNKSKNLMD
SIO_010081: CupepM_p33
subclass of: SO_0000673
so part of: CupepM_p33
location: 950904..951290
location: region:950904-951290:1
so has part: feature:950904-951290:1:exon

YP_003587375.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:950904-951290:1:exon

CupepM_p33
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: sdh4
locus tag: CupepM_p33
note: C to U RNA editing; CGG(R) to UGG(W)
SIO_010081: CupepM_p33
subclass of: SO_0000673
so part of: CupepM_p33
location: 950932
location: region:950932-950932:1
so has part: feature:950932-950932:1:exon

position:950932:1
position: 950932
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:950932-950932:1:exon

CupepM_p18
type: Exon
subclass of: SO_0000147
RO_0002162: 3663
gene: nad2
locus tag: CupepM_p18
number: 5
SIO_010081: CupepM_p18
subclass of: SO_0000673
so part of: CupepM_p18
location: complement(952029..952217)
location: region:952029-952217:-1
so has part: feature:952029-952217:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:952029-952217:-1:exon

CupepM_p18
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad2
locus tag: CupepM_p18
note: C to U RNA editing; CCA(P) to UUA(L)
SIO_010081: CupepM_p18
subclass of: SO_0000673
so part of: CupepM_p18
location: complement(952087)
location: region:952087-952087:-1
so has part: feature:952087-952087:-1:exon

position:952087:-1
position: 952087
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:952087-952087:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: C to U RNA editing; CCA(P) to UUA(L)
so part of: sequence
location: 952088
location: region:952088-952088:1
so has part: feature:952088-952088:1:region

position:952088:1
position: 952088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:952088-952088:1:region

CupepM_p18
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad2
locus tag: CupepM_p18
note: C to U RNA editing; UCC(S) to UUC(F)
SIO_010081: CupepM_p18
subclass of: SO_0000673
so part of: CupepM_p18
location: complement(952093)
location: region:952093-952093:-1
so has part: feature:952093-952093:-1:exon

position:952093:-1
position: 952093
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:952093-952093:-1:exon

CupepM_p18
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad2
locus tag: CupepM_p18
note: C to U RNA editing; GCG(A) to GUG(V)
SIO_010081: CupepM_p18
subclass of: SO_0000673
so part of: CupepM_p18
location: complement(952198)
location: region:952198-952198:-1
so has part: feature:952198-952198:-1:exon

position:952198:-1
position: 952198
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:952198-952198:-1:exon

CupepM_p18
type: Intron
subclass of: SO_0000188
RO_0002162: 3663
gene: nad2
locus tag: CupepM_p18
note: cis-spliced intron
number: 4
SIO_010081: CupepM_p18
subclass of: SO_0000673
so part of: CupepM_p18
location: complement(952218..953635)
location: region:952218-953635:-1
so has part: feature:952218-953635:-1:exon

position:952218:-1
position: 952218
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:953635:-1
position: 953635
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:952218-953635:-1:exon

CupepM_p18
type: Exon
subclass of: SO_0000147
RO_0002162: 3663
gene: nad2
locus tag: CupepM_p18
number: 4
SIO_010081: CupepM_p18
subclass of: SO_0000673
so part of: CupepM_p18
location: complement(953636..954207)
location: region:953636-954207:-1
so has part: feature:953636-954207:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:953636-954207:-1:exon

CupepM_p18
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad2
locus tag: CupepM_p18
note: C to U RNA editing; CGU(R) to UGU(C)
SIO_010081: CupepM_p18
subclass of: SO_0000673
so part of: CupepM_p18
location: complement(953638)
location: region:953638-953638:-1
so has part: feature:953638-953638:-1:exon

position:953638:-1
position: 953638
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:953638-953638:-1:exon

CupepM_p18
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad2
locus tag: CupepM_p18
note: C to U RNA editing; CCA(P) to UCA(S)
SIO_010081: CupepM_p18
subclass of: SO_0000673
so part of: CupepM_p18
location: complement(953668)
location: region:953668-953668:-1
so has part: feature:953668-953668:-1:exon

position:953668:-1
position: 953668
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:953668-953668:-1:exon

CupepM_p18
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad2
locus tag: CupepM_p18
note: C to U RNA editing; UUC(F) to UUU(F)
SIO_010081: CupepM_p18
subclass of: SO_0000673
so part of: CupepM_p18
location: complement(953702)
location: region:953702-953702:-1
so has part: feature:953702-953702:-1:exon

position:953702:-1
position: 953702
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:953702-953702:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: partial C to U RNA editing; UUC(F) to UUY(F)
so part of: sequence
location: 953714
location: region:953714-953714:1
so has part: feature:953714-953714:1:region

position:953714:1
position: 953714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:953714-953714:1:region

CupepM_p18
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad2
locus tag: CupepM_p18
note: C to U RNA editing; UCG(S) to UUG(L)
SIO_010081: CupepM_p18
subclass of: SO_0000673
so part of: CupepM_p18
location: complement(953787)
location: region:953787-953787:-1
so has part: feature:953787-953787:-1:exon

position:953787:-1
position: 953787
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:953787-953787:-1:exon

CupepM_p18
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad2
locus tag: CupepM_p18
note: C to U RNA editing; ACU(T) to AUU(I)
SIO_010081: CupepM_p18
subclass of: SO_0000673
so part of: CupepM_p18
location: complement(953952)
location: region:953952-953952:-1
so has part: feature:953952-953952:-1:exon

position:953952:-1
position: 953952
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:953952-953952:-1:exon

CupepM_p18
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad2
locus tag: CupepM_p18
note: C to U RNA editing; CGU(R) to UGU(C)
SIO_010081: CupepM_p18
subclass of: SO_0000673
so part of: CupepM_p18
location: complement(953956)
location: region:953956-953956:-1
so has part: feature:953956-953956:-1:exon

position:953956:-1
position: 953956
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:953956-953956:-1:exon

CupepM_p18
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad2
locus tag: CupepM_p18
note: C to U RNA editing; CAU(H) to UAU(Y)
SIO_010081: CupepM_p18
subclass of: SO_0000673
so part of: CupepM_p18
location: complement(953986)
location: region:953986-953986:-1
so has part: feature:953986-953986:-1:exon

position:953986:-1
position: 953986
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:953986-953986:-1:exon

CupepM_p18
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad2
locus tag: CupepM_p18
note: C to U RNA editing; CCU(P) to CUU(L)
SIO_010081: CupepM_p18
subclass of: SO_0000673
so part of: CupepM_p18
location: complement(953994)
location: region:953994-953994:-1
so has part: feature:953994-953994:-1:exon

position:953994:-1
position: 953994
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:953994-953994:-1:exon

CupepM_p18
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad2
locus tag: CupepM_p18
note: C to U RNA editing; UCU(S) to UUU(F)
SIO_010081: CupepM_p18
subclass of: SO_0000673
so part of: CupepM_p18
location: complement(954105)
location: region:954105-954105:-1
so has part: feature:954105-954105:-1:exon

position:954105:-1
position: 954105
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:954105-954105:-1:exon

CupepM_p18
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad2
locus tag: CupepM_p18
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p18
subclass of: SO_0000673
so part of: CupepM_p18
location: complement(954114)
location: region:954114-954114:-1
so has part: feature:954114-954114:-1:exon

position:954114:-1
position: 954114
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:954114-954114:-1:exon

CupepM_p18
type: Intron
subclass of: SO_0000188
RO_0002162: 3663
gene: nad2
locus tag: CupepM_p18
note: cis-spliced intron
number: 3
SIO_010081: CupepM_p18
subclass of: SO_0000673
so part of: CupepM_p18
location: complement(954208..956478)
location: region:954208-956478:-1
so has part: feature:954208-956478:-1:exon

position:954208:-1
position: 954208
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:956478:-1
position: 956478
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:954208-956478:-1:exon

CupepM_p18
type: Exon
subclass of: SO_0000147
RO_0002162: 3663
gene: nad2
locus tag: CupepM_p18
number: 3
SIO_010081: CupepM_p18
subclass of: SO_0000673
so part of: CupepM_p18
location: complement(956479..956639)
location: region:956479-956639:-1
so has part: feature:956479-956639:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:956479-956639:-1:exon

CupepM_p18
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad2
locus tag: CupepM_p18
note: C to U RNA editing; UCU(S) to UUU(F)
SIO_010081: CupepM_p18
subclass of: SO_0000673
so part of: CupepM_p18
location: complement(956523)
location: region:956523-956523:-1
so has part: feature:956523-956523:-1:exon

position:956523:-1
position: 956523
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:956523-956523:-1:exon

CupepM_t11
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: trnY(GTA)
locus tag: CupepM_t11
note: anticodon:GTA
so part of: sequence
location: complement(957149..957231)
location: region:957149-957231:-1
so has part: feature:957149-957231:-1:exon
subclass of: SO_0000663

9072852
type: Gene
SIO_000068: ncbigene

position:957149:-1
position: 957149
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:957231:-1
position: 957231
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:957149-957231:-1:exon

CupepM_t11
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3663
gene: trnY(GTA)
locus tag: CupepM_t11
product: tRNA-Tyr
SIO_010081: CupepM_t11
subclass of: SO_0000673
so part of: CupepM_t11
location: complement(957149..957231)
location: region:957149-957231:-1
so has part: feature:957149-957231:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:957149-957231:-1:exon

CupepM_t12
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: trnN(GTT)-cp
locus tag: CupepM_t12
note: anticodon:GTT; chloroplast-like
so part of: sequence
location: complement(958219..958290)
location: region:958219-958290:-1
so has part: feature:958219-958290:-1:exon
subclass of: SO_0000663

9072866
type: Gene
SIO_000068: ncbigene

position:958219:-1
position: 958219
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:958290:-1
position: 958290
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:958219-958290:-1:exon

CupepM_t12
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3663
gene: trnN(GTT)-cp
locus tag: CupepM_t12
product: tRNA-Asn
SIO_010081: CupepM_t12
subclass of: SO_0000673
so part of: CupepM_t12
location: complement(958219..958290)
location: region:958219-958290:-1
so has part: feature:958219-958290:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:958219-958290:-1:exon

CupepM_t13
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: trnC(GCA)
locus tag: CupepM_t13
note: anticodon:GCA
so part of: sequence
location: complement(960030..960100)
location: region:960030-960100:-1
so has part: feature:960030-960100:-1:exon
subclass of: SO_0000663

9072853
type: Gene
SIO_000068: ncbigene

position:960030:-1
position: 960030
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:960100:-1
position: 960100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:960030-960100:-1:exon

CupepM_t13
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3663
gene: trnC(GCA)
locus tag: CupepM_t13
product: tRNA-Cys
SIO_010081: CupepM_t13
subclass of: SO_0000673
so part of: CupepM_t13
location: complement(960030..960100)
location: region:960030-960100:-1
so has part: feature:960030-960100:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:960030-960100:-1:exon

CupepM_p34
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: nad3
locus tag: CupepM_p34
so part of: sequence
location: 963937..964293
location: region:963937-964293:1
so has part: feature:963937-964293:1:exon
subclass of: SO_0000010

9072854
type: Gene
SIO_000068: ncbigene

position:963937:1
position: 963937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:964293:1
position: 964293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:963937-964293:1:exon

CupepM_p34
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3663
gene: nad3
locus tag: CupepM_p34
exception: RNA editing
codon start: 1
product: NADH dehydrogenase subunit 3
translation: MLEFAPICIYLVISLLVSLILLGLPFLFASNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILFIIFDLEVTFFFPWAVSLNKIDLFGFWSMMAFLFILTIGFLYEWKRGALDWE
SIO_010081: CupepM_p34
subclass of: SO_0000673
so part of: CupepM_p34
location: 963937..964293
location: region:963937-964293:1
so has part: feature:963937-964293:1:exon

YP_003587376.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:963937-964293:1:exon

CupepM_p34
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad3
locus tag: CupepM_p34
note: C to U RNA editing; UCA(S) to UUA(L)
SIO_010081: CupepM_p34
subclass of: SO_0000673
so part of: CupepM_p34
location: 963941
location: region:963941-963941:1
so has part: feature:963941-963941:1:exon

position:963941:1
position: 963941
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:963941-963941:1:exon

CupepM_p34
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad3
locus tag: CupepM_p34
note: C to U RNA editing; CCA(P) to CUA(L)
SIO_010081: CupepM_p34
subclass of: SO_0000673
so part of: CupepM_p34
location: 963998
location: region:963998-963998:1
so has part: feature:963998-963998:1:exon

position:963998:1
position: 963998
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:963998-963998:1:exon

CupepM_p34
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad3
locus tag: CupepM_p34
note: C to U RNA editing; CCA(P) to CUA(L)
SIO_010081: CupepM_p34
subclass of: SO_0000673
so part of: CupepM_p34
location: 964016
location: region:964016-964016:1
so has part: feature:964016-964016:1:exon

position:964016:1
position: 964016
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:964016-964016:1:exon

CupepM_p34
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad3
locus tag: CupepM_p34
note: C to U RNA editing; UCC(S) to UUC(F)
SIO_010081: CupepM_p34
subclass of: SO_0000673
so part of: CupepM_p34
location: 964082
location: region:964082-964082:1
so has part: feature:964082-964082:1:exon

position:964082:1
position: 964082
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:964082-964082:1:exon

CupepM_p34
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad3
locus tag: CupepM_p34
note: C to U RNA editing; CUU(L) to UUU(F)
SIO_010081: CupepM_p34
subclass of: SO_0000673
so part of: CupepM_p34
location: 964144
location: region:964144-964144:1
so has part: feature:964144-964144:1:exon

position:964144:1
position: 964144
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:964144-964144:1:exon

CupepM_p34
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad3
locus tag: CupepM_p34
note: C to U RNA editing; CCG(P) to CUG(L)
SIO_010081: CupepM_p34
subclass of: SO_0000673
so part of: CupepM_p34
location: 964151
location: region:964151-964151:1
so has part: feature:964151-964151:1:exon

position:964151:1
position: 964151
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:964151-964151:1:exon

CupepM_p34
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad3
locus tag: CupepM_p34
note: partial C to U RNA editing; UCU(S) to UYU(S/F)
SIO_010081: CupepM_p34
subclass of: SO_0000673
so part of: CupepM_p34
location: 964166
location: region:964166-964166:1
so has part: feature:964166-964166:1:exon

position:964166:1
position: 964166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:964166-964166:1:exon

CupepM_p34
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad3
locus tag: CupepM_p34
note: partial C to U RNA editing; CCU(P) to YCU(P/S)
SIO_010081: CupepM_p34
subclass of: SO_0000673
so part of: CupepM_p34
location: 964183
location: region:964183-964183:1
so has part: feature:964183-964183:1:exon

position:964183:1
position: 964183
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:964183-964183:1:exon

CupepM_p34
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad3
locus tag: CupepM_p34
note: C to U RNA editing; UCU(S) to UUU(F)
SIO_010081: CupepM_p34
subclass of: SO_0000673
so part of: CupepM_p34
location: 964211
location: region:964211-964211:1
so has part: feature:964211-964211:1:exon

position:964211:1
position: 964211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:964211-964211:1:exon

CupepM_p34
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad3
locus tag: CupepM_p34
note: C to U RNA editing; CGG(R) to UGG(W)
SIO_010081: CupepM_p34
subclass of: SO_0000673
so part of: CupepM_p34
location: 964285
location: region:964285-964285:1
so has part: feature:964285-964285:1:exon

position:964285:1
position: 964285
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:964285-964285:1:exon

CupepM_p35
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: rps12
locus tag: CupepM_p35
so part of: sequence
location: 964346..964723
location: region:964346-964723:1
so has part: feature:964346-964723:1:exon
subclass of: SO_0000010

9072833
type: Gene
SIO_000068: ncbigene

position:964346:1
position: 964346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:964723:1
position: 964723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:964346-964723:1:exon

CupepM_p35
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3663
gene: rps12
locus tag: CupepM_p35
exception: RNA editing
codon start: 1
product: ribosomal protein S12
translation: MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRLSTRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRGVKDLLGIPDRRRGRSKYGAEKPKSI
SIO_010081: CupepM_p35
subclass of: SO_0000673
so part of: CupepM_p35
location: 964346..964723
location: region:964346-964723:1
so has part: feature:964346-964723:1:exon

YP_003587377.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:964346-964723:1:exon

CupepM_p35
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps12
locus tag: CupepM_p35
note: C to U RNA editing; UCG(S) to UUG(L)
SIO_010081: CupepM_p35
subclass of: SO_0000673
so part of: CupepM_p35
location: 964416
location: region:964416-964416:1
so has part: feature:964416-964416:1:exon

position:964416:1
position: 964416
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:964416-964416:1:exon

CupepM_p35
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps12
locus tag: CupepM_p35
note: partial C to U RNA editing; CGC(R) to YGC(R/C)
SIO_010081: CupepM_p35
subclass of: SO_0000673
so part of: CupepM_p35
location: 964445
location: region:964445-964445:1
so has part: feature:964445-964445:1:exon

position:964445:1
position: 964445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:964445-964445:1:exon

CupepM_p35
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps12
locus tag: CupepM_p35
note: partial C to U RNA editing; CCC(P) to CYC(P/L)
SIO_010081: CupepM_p35
subclass of: SO_0000673
so part of: CupepM_p35
location: 964449
location: region:964449-964449:1
so has part: feature:964449-964449:1:exon

position:964449:1
position: 964449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:964449-964449:1:exon

CupepM_p35
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps12
locus tag: CupepM_p35
note: partial C to U RNA editing; CCA(P) to CYA(P/L)
SIO_010081: CupepM_p35
subclass of: SO_0000673
so part of: CupepM_p35
location: 964491
location: region:964491-964491:1
so has part: feature:964491-964491:1:exon

position:964491:1
position: 964491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:964491-964491:1:exon

CupepM_p35
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps12
locus tag: CupepM_p35
note: partial C to U RNA editing; UCG(S) to UYG(S/L)
SIO_010081: CupepM_p35
subclass of: SO_0000673
so part of: CupepM_p35
location: 964614
location: region:964614-964614:1
so has part: feature:964614-964614:1:exon

position:964614:1
position: 964614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:964614-964614:1:exon

CupepM_p35
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps12
locus tag: CupepM_p35
note: partial C to U RNA editing; UCC(S) to UYC(S/F)
SIO_010081: CupepM_p35
subclass of: SO_0000673
so part of: CupepM_p35
location: 964629
location: region:964629-964629:1
so has part: feature:964629-964629:1:exon

position:964629:1
position: 964629
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:964629-964629:1:exon

CupepM_p36
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: nad9
locus tag: CupepM_p36
so part of: sequence
location: 965770..966342
location: region:965770-966342:1
so has part: feature:965770-966342:1:exon
subclass of: SO_0000010

9072844
type: Gene
SIO_000068: ncbigene

position:965770:1
position: 965770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:966342:1
position: 966342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:965770-966342:1:exon

CupepM_p36
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3663
gene: nad9
locus tag: CupepM_p36
exception: RNA editing
codon start: 1
product: NADH dehydrogenase subunit 9
translation: MDNQFIFKYSWETLPKKWVKKRERSEHGNRLDTNTDYLFQLLCFLKLHTYTRVQVLIDICGVDYPSRKRRFAVVYNLLSTRYNSRIRVQTRADEVTRISSVVSLFPSAGWWEREVWDMFGVSFINHPDLRRILTDYGFEGHPLRKDFPLSGYVEVRYDDPEKRVVSEPIEMTQEFRYFDFASPWEQRSDR
SIO_010081: CupepM_p36
subclass of: SO_0000673
so part of: CupepM_p36
location: 965770..966342
location: region:965770-966342:1
so has part: feature:965770-966342:1:exon

YP_003587378.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:965770-966342:1:exon

CupepM_p36
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad9
locus tag: CupepM_p36
note: C to U RNA editing; UCC(S) to UUC(F)
SIO_010081: CupepM_p36
subclass of: SO_0000673
so part of: CupepM_p36
location: 965783
location: region:965783-965783:1
so has part: feature:965783-965783:1:exon

position:965783:1
position: 965783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:965783-965783:1:exon

CupepM_p36
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad9
locus tag: CupepM_p36
note: partial C to U RNA editing; UCG(S) to UYG(S/L)
SIO_010081: CupepM_p36
subclass of: SO_0000673
so part of: CupepM_p36
location: 965861
location: region:965861-965861:1
so has part: feature:965861-965861:1:exon

position:965861:1
position: 965861
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:965861-965861:1:exon

CupepM_p36
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad9
locus tag: CupepM_p36
note: partial C to U RNA editing; UCG(S) to UYG(S/L)
SIO_010081: CupepM_p36
subclass of: SO_0000673
so part of: CupepM_p36
location: 965936
location: region:965936-965936:1
so has part: feature:965936-965936:1:exon

position:965936:1
position: 965936
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:965936-965936:1:exon

CupepM_p36
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad9
locus tag: CupepM_p36
note: partial C to U RNA editing; CCG(P) to YCG(P/S)
SIO_010081: CupepM_p36
subclass of: SO_0000673
so part of: CupepM_p36
location: 966067
location: region:966067-966067:1
so has part: feature:966067-966067:1:exon

position:966067:1
position: 966067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:966067-966067:1:exon

CupepM_p36
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad9
locus tag: CupepM_p36
note: partial C to U RNA editing; CGG(R) to YGG(R/W)
SIO_010081: CupepM_p36
subclass of: SO_0000673
so part of: CupepM_p36
location: 966097
location: region:966097-966097:1
so has part: feature:966097-966097:1:exon

position:966097:1
position: 966097
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:966097-966097:1:exon

CupepM_p36
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad9
locus tag: CupepM_p36
note: partial C to U RNA editing; UCC(S) to UYC(S/F)
SIO_010081: CupepM_p36
subclass of: SO_0000673
so part of: CupepM_p36
location: 966137
location: region:966137-966137:1
so has part: feature:966137-966137:1:exon

position:966137:1
position: 966137
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:966137-966137:1:exon

CupepM_p36
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad9
locus tag: CupepM_p36
note: partial C to U RNA editing; UCA(S) to UYA(S/L)
SIO_010081: CupepM_p36
subclass of: SO_0000673
so part of: CupepM_p36
location: 966167
location: region:966167-966167:1
so has part: feature:966167-966167:1:exon

position:966167:1
position: 966167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:966167-966167:1:exon

CupepM_p36
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: nad9
locus tag: CupepM_p36
note: partial C to U RNA editing; CUU(L) to YUU(L/F)
SIO_010081: CupepM_p36
subclass of: SO_0000673
so part of: CupepM_p36
location: 966208
location: region:966208-966208:1
so has part: feature:966208-966208:1:exon

position:966208:1
position: 966208
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:966208-966208:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: similar to chloroplast LSC region from trnP-psaJ spacer to petG-trnW spacer
so part of: sequence
location: 966744..967248
location: region:966744-967248:1
so has part: feature:966744-967248:1:region

position:966744:1
position: 966744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:967248:1
position: 967248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:966744-967248:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: degenerate chloroplast-like trnP embedded within larger region of chloroplast DNA
pseudo: true
so part of: sequence
location: 966947..967017
location: region:966947-967017:1
so has part: feature:966947-967017:1:region

position:966947:1
position: 966947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:967017:1
position: 967017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:966947-967017:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
note: putative trnW(CCA)-cp with anticodon CCA; intact chloroplast-like trnW embedded within larger region of chloroplast DNA, possibly functional
so part of: sequence
location: 967163..967236
location: region:967163-967236:1
so has part: feature:967163-967236:1:region

position:967163:1
position: 967163
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:967236:1
position: 967236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:967163-967236:1:region

CupepM_p37
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: rps1
locus tag: CupepM_p37
so part of: sequence
location: 967976..968581
location: region:967976-968581:1
so has part: feature:967976-968581:1:exon
subclass of: SO_0000010

9072839
type: Gene
SIO_000068: ncbigene

position:967976:1
position: 967976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:968581:1
position: 968581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:967976-968581:1:exon

CupepM_p37
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3663
gene: rps1
locus tag: CupepM_p37
exception: RNA editing
codon start: 1
product: ribosomal protein S1
translation: MSIYLSRSFPRSNSSFFLRSGNALQSSVLRLREEMFLVDAGPGTPRICMQDEPTGVPINRAARFENKVGFLDLVAGESLIKEPILERFFIDLVAGESLIKERAAAGFNDLVGSTDVVAGEPLFILPRRFRQNRAWMELNKIWQTNTKVKGFIIEKVKGGYSVAIAGFITFLPFRPLISQRISNERFTIESINPKTTNIVVF
SIO_010081: CupepM_p37
subclass of: SO_0000673
so part of: CupepM_p37
location: 967976..968581
location: region:967976-968581:1
so has part: feature:967976-968581:1:exon

YP_003587379.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:967976-968581:1:exon

CupepM_p37
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps1
locus tag: CupepM_p37
note: C to U RNA editing; UCC(S) to UUC(F)
SIO_010081: CupepM_p37
subclass of: SO_0000673
so part of: CupepM_p37
location: 968184
location: region:968184-968184:1
so has part: feature:968184-968184:1:exon

position:968184:1
position: 968184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:968184-968184:1:exon

CupepM_p38
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: rps19-2
locus tag: CupepM_p38
note: 1 of 2 rps19 genes
so part of: sequence
location: 980149..980466
location: region:980149-980466:1
so has part: feature:980149-980466:1:exon
subclass of: SO_0000010

9072843
type: Gene
SIO_000068: ncbigene

position:980149:1
position: 980149
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:980466:1
position: 980466
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:980149-980466:1:exon

CupepM_p38
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3663
gene: rps19-2
locus tag: CupepM_p38
exception: RNA editing
codon start: 1
product: ribosomal protein S19
translation: MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTFVRCKITEGRVGHKFGEFALTRKRRLSRTNIGPGKKRGESQGAYGTKRKSD
SIO_010081: CupepM_p38
subclass of: SO_0000673
so part of: CupepM_p38
location: 980149..980466
location: region:980149-980466:1
so has part: feature:980149-980466:1:exon

YP_003587380.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:980149-980466:1:exon

CupepM_p38
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps19-2
locus tag: CupepM_p38
note: partial C to U RNA editing; UCC(S) to UCY(S)
SIO_010081: CupepM_p38
subclass of: SO_0000673
so part of: CupepM_p38
location: 980286
location: region:980286-980286:1
so has part: feature:980286-980286:1:exon

position:980286:1
position: 980286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:980286-980286:1:exon

CupepM_p38
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps19-2
locus tag: CupepM_p38
note: partial C to U RNA editing; UCU(S) to UYU(S/F)
SIO_010081: CupepM_p38
subclass of: SO_0000673
so part of: CupepM_p38
location: 980312
location: region:980312-980312:1
so has part: feature:980312-980312:1:exon

position:980312:1
position: 980312
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:980312-980312:1:exon

CupepM_p38
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps19-2
locus tag: CupepM_p38
note: partial C to U RNA editing; AUC(I) to AUY(I)
SIO_010081: CupepM_p38
subclass of: SO_0000673
so part of: CupepM_p38
location: 980328
location: region:980328-980328:1
so has part: feature:980328-980328:1:exon

position:980328:1
position: 980328
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:980328-980328:1:exon

CupepM_p38
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps19-2
locus tag: CupepM_p38
note: C to U RNA editing; UCG(S) to UUG(L)
SIO_010081: CupepM_p38
subclass of: SO_0000673
so part of: CupepM_p38
location: 980369
location: region:980369-980369:1
so has part: feature:980369-980369:1:exon

position:980369:1
position: 980369
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:980369-980369:1:exon

CupepM_p39
type: Gene
subclass of: SO_0000704
RO_0002162: 3663
gene: rps10
locus tag: CupepM_p39
so part of: sequence
location: 981464..982606
location: region:981464-982606:1
so has part: feature:981464-982606:1:exon
subclass of: SO_0000010

9072847
type: Gene
SIO_000068: ncbigene

position:981464:1
position: 981464
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:982606:1
position: 982606
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:981464-982606:1:exon

CupepM_p39
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3663
gene: rps10
locus tag: CupepM_p39
exception: RNA editing
codon start: 1
product: ribosomal protein S10
translation: MTTKICIVIRSFDHPFLENHFWGLPPYTRKIRLPESRVNYTVLRSPHIDKKSREQFEMERKKELLVIKTERHELRKKFFWLKRQRIFGAQYEILFSCKTRLDKVKLQRLL
SIO_010081: CupepM_p39
subclass of: SO_0000673
so part of: CupepM_p39
location: join(981464..981713,982524..982606)
location: region:981464-982606:1
so has part: feature:981464-981713:1:exon
so has part: feature:982524-982606:1:exon

YP_003587381.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:981464-981713:1:exon

position:981713:1
position: 981713
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:982524-982606:1:exon

position:982524:1
position: 982524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CupepM_p39
type: Exon
subclass of: SO_0000147
RO_0002162: 3663
gene: rps10
locus tag: CupepM_p39
number: 1
SIO_010081: CupepM_p39
subclass of: SO_0000673
so part of: CupepM_p39
location: 981464..981713
location: region:981464-981713:1
so has part: feature:981464-981713:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:981464-981713:1:exon

CupepM_p39
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps10
locus tag: CupepM_p39
note: C to U RNA editing; ACG(T) to AUG(M)
SIO_010081: CupepM_p39
subclass of: SO_0000673
so part of: CupepM_p39
location: 981465
location: region:981465-981465:1
so has part: feature:981465-981465:1:exon

position:981465:1
position: 981465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:981465-981465:1:exon

CupepM_p39
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps10
locus tag: CupepM_p39
note: C to U RNA editing; CGC(R) to UGC(C)
SIO_010081: CupepM_p39
subclass of: SO_0000673
so part of: CupepM_p39
location: 981479
location: region:981479-981479:1
so has part: feature:981479-981479:1:exon

position:981479:1
position: 981479
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:981479-981479:1:exon

CupepM_p39
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps10
locus tag: CupepM_p39
note: C to U RNA editing; CGG(R) to UGG(W)
SIO_010081: CupepM_p39
subclass of: SO_0000673
so part of: CupepM_p39
location: 981701
location: region:981701-981701:1
so has part: feature:981701-981701:1:exon

position:981701:1
position: 981701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:981701-981701:1:exon

CupepM_p39
type: Intron
subclass of: SO_0000188
RO_0002162: 3663
gene: rps10
locus tag: CupepM_p39
SIO_010081: CupepM_p39
subclass of: SO_0000673
so part of: CupepM_p39
location: 981714..982523
location: region:981714-982523:1
so has part: feature:981714-982523:1:exon

position:981714:1
position: 981714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:982523:1
position: 982523
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:981714-982523:1:exon

CupepM_p39
type: Exon
subclass of: SO_0000147
RO_0002162: 3663
gene: rps10
locus tag: CupepM_p39
number: 2
SIO_010081: CupepM_p39
subclass of: SO_0000673
so part of: CupepM_p39
location: 982524..982606
location: region:982524-982606:1
so has part: feature:982524-982606:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:982524-982606:1:exon

CupepM_p39
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps10
locus tag: CupepM_p39
note: partial C to U RNA editing; UCG(S) to UYG(S/L)
SIO_010081: CupepM_p39
subclass of: SO_0000673
so part of: CupepM_p39
location: 982575
location: region:982575-982575:1
so has part: feature:982575-982575:1:exon

position:982575:1
position: 982575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:982575-982575:1:exon

CupepM_p39
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3663
gene: rps10
locus tag: CupepM_p39
note: C to U RNA editing; CGA(R) to UGA(TERM)
SIO_010081: CupepM_p39
subclass of: SO_0000673
so part of: CupepM_p39
location: 982604
location: region:982604-982604:1
so has part: feature:982604-982604:1:exon

position:982604:1
position: 982604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:982604-982604:1:exon