Cucumis sativus mitochondrion chromosome 1, complete sequence.
type: Entry
definition: Cucumis sativus mitochondrion chromosome 1, complete sequence.
sequence version: NC_016005.1
sequence date: 2023-04-03
sequence: sequence
division: PLN
label: NC_016005.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Cucumis sativus (cucumber)
organism: Cucumis sativus
taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis.
reference: 1
references: 21742987
reference: 2
reference: 3
comment: PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to HQ860792.\nGenBank Accession Numbers HQ860792-HQ860794 represent sequences\nfrom the 3 chromosomes of the complete mitochondrial genome of\nCucumis sativus.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 1555935
topology: circular
so has quality: SO_0000988
location: 1..1555935
location: region:1-1555935:1
RO_0002162: 3659

NC_016005
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: Origins and recombination of the bacterial-sized multichromosomal mitochondrial genome of cucumber
author: Alverson, A.J.
author: Rice, D.W.
author: Dickinson, S.
author: Barry, K.
author: Palmer, J.D.
journal: Plant Cell
volume: 23
issue: 7
pages: 2499-2513
year: 2011
pubmed: 21742987

21742987
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (13-SEP-2011) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Alverson, A.J.
author: Rice, D.W.
author: Dickinson, S.
author: Palmer, J.D.
journal: Submitted (07-JAN-2011) Department of Biology, Indiana University, 1001 E Third Street, Bloomington, IN 47405, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1555935:1
position: 1555935
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-1555935:1:source
so part of: sequence
organism: Cucumis sativus
organelle: mitochondrion
mol type: genomic DNA
cultivar: Calypso
chromosome: 1

3659
type: Taxonomy
SIO_000068: taxonomy

CusaM_p03
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: nad5
locus tag: CusaM_p03
trans splicing: true
so part of: sequence
location: join(1510984..1514152,8302..8323,417477..419145)
location: region:8302-1514152:1
so has part: feature:1510984-1514152:1:exon
so has part: feature:8302-8323:1:exon
so has part: feature:417477-419145:1:exon
subclass of: SO_0000010

11123919
type: Gene
SIO_000068: ncbigene

position:8302:1
position: 8302
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1514152:1
position: 1514152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1510984-1514152:1:exon

position:1510984:1
position: 1510984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:8302-8323:1:exon

position:8323:1
position: 8323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:417477-419145:1:exon

position:417477:1
position: 417477
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:419145:1
position: 419145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CusaM_p03
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3659
gene: nad5
locus tag: CusaM_p03
trans splicing: true
codon start: 1
product: NADH dehydrogenase subunit 5
translation: MYLLIVFLPLLGSGVAGFFGRFLGSEGTAIITTTCVSFSSLFSFLAFYEVALGASACYLRIAPWISSEMFDASWGFLFDSPTVVMLIVVTSISSLVHLYSISYMEEDPHSPRFMSYLSIFTFFMPMLVTGDNSLQLFLGWEGVGLASYLLIHFWFTRLQADKAAIKAMPVNRVGDFGLAPGISGRFTLFQTVDFSTIFARASAPRNSWISCNMRLNAITLICILLLIGAVGKSAQIGSHTWSPDAMEGPTPVSASIHAATMVTAGVFMIARCSPLFEYPPTALIVITSAGATTSFLAATTGILQNDLKRVIAYSTCSQLGYMIFACGISNYSVSVFHLMNHAFFKALLFLSAGSVIHAMSDEQDMRKMGGLASSFPFTYAMMLMGSLSLIGFPFLTGFYSKDVILELAYTKYTISGNFAFWLGSLSVLFTSYYSFRSLFLTFLVPTNSFGRDIVRSHDAPIPMAIPSILLALGSLFVGYLAKDMMIGLGTNFWANSPFVLPKNEILAESEFAAPTITKLIPILFSTSGASVAYNVNPVADQFQRAFQTSTFCNRLYSFFNKRWFFDQVLNDFLVRSFLRFGYSVSFSALDKGAIEILGPYGISYTFRRLAERISQLQSGFVYHYAFAILLGLTLFVTFSRMWDSLSSWVDNRSSFILIVSPFFFDNNK
SIO_010081: CusaM_p03
subclass of: SO_0000673
so part of: CusaM_p03
location: join(1510984..1511213,1512937..1514152,8302..8323,417477..417871,419002..419145)
location: region:8302-1514152:1
so has part: feature:1510984-1511213:1:exon
so has part: feature:1512937-1514152:1:exon
so has part: feature:8302-8323:1:exon
so has part: feature:417477-417871:1:exon
so has part: feature:419002-419145:1:exon

YP_004849319.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1510984-1511213:1:exon

position:1511213:1
position: 1511213
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1512937-1514152:1:exon

position:1512937:1
position: 1512937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:8302-8323:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:417477-417871:1:exon

position:417871:1
position: 417871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:419002-419145:1:exon

position:419002:1
position: 419002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CusaM_p01
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: cox1
locus tag: CusaM_p01
so part of: sequence
location: 1..2592
location: region:1-2592:1
so has part: feature:1-2592:1:exon
subclass of: SO_0000010

11123892
type: Gene
SIO_000068: ncbigene

position:2592:1
position: 2592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-2592:1:exon

CusaM_p01
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3659
gene: cox1
locus tag: CusaM_p01
exception: RNA editing
codon start: 1
product: cytochrome c oxidase subunit 1
translation: MINLVRWLFSTNHKDIGTLYFIFGAIAGVMGTCFSVLIRMELARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPAMIGGSGNWSVPILIGAPDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLSGITSHSGGAVDSAISSLHLSGISSILGSINFITTISNMRGPGMTMHRSPLFVWSVLVTAFPLLLSLPVLAGAITMLLTDRNFNTTFSDPAGGGDPILYQHLFWFFGHPEVYILILPGSGIISHIVSTFSGKPVFGYLGMVYAMISIGVLGFLVWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKIFSWIATMWGGSIQYKTPMLFAVGSIFLFTIGGLTGIVPANSGLDIALHDTYYVVAHFHYVLSMGAVFALFAGFHYWVGKIFGRTYPETLGQIHFWITFFGVNPTLFPMHFLGLSGMPRRIPDYPDAYAGWNALSSFGSYISVVGIRRFFVVVTITSSSGNQKRCAPSPWALEQNSSTLEWMVQSPPAFHTFGELPAIKETKSYVK
SIO_010081: CusaM_p01
subclass of: SO_0000673
so part of: CusaM_p01
location: join(1..726,1735..2592)
location: region:1-2592:1
so has part: feature:1-726:1:exon
so has part: feature:1735-2592:1:exon

YP_004849320.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-726:1:exon

position:726:1
position: 726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1735-2592:1:exon

position:1735:1
position: 1735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CusaM_p01
type: Exon
subclass of: SO_0000147
RO_0002162: 3659
gene: cox1
locus tag: CusaM_p01
number: 1
SIO_010081: CusaM_p01
subclass of: SO_0000673
so part of: CusaM_p01
location: 1..726
location: region:1-726:1
so has part: feature:1-726:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1-726:1:exon

CusaM_p01
type: Intron
subclass of: SO_0000188
RO_0002162: 3659
gene: cox1
locus tag: CusaM_p01
SIO_010081: CusaM_p01
subclass of: SO_0000673
so part of: CusaM_p01
location: 727..1734
location: region:727-1734:1
so has part: feature:727-1734:1:exon

position:727:1
position: 727
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1734:1
position: 1734
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:727-1734:1:exon

CusaM_p01
type: Exon
subclass of: SO_0000147
RO_0002162: 3659
gene: cox1
locus tag: CusaM_p01
number: 2
SIO_010081: CusaM_p01
subclass of: SO_0000673
so part of: CusaM_p01
location: 1735..2592
location: region:1735-2592:1
so has part: feature:1735-2592:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1735-2592:1:exon

CusaM_p02
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: ccmFc
locus tag: CusaM_p02
so part of: sequence
location: 4099..6394
location: region:4099-6394:1
so has part: feature:4099-6394:1:exon
subclass of: SO_0000010

11123894
type: Gene
SIO_000068: ncbigene

position:4099:1
position: 4099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6394:1
position: 6394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4099-6394:1:exon

CusaM_p02
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3659
gene: ccmFc
locus tag: CusaM_p02
codon start: 1
product: cytochrome c biogenesis FC
translation: MVQLNNFFFFITSMVVPRGTAAPVLFQWFVSRDVPTGAPSSNGTIIPIPISLFPLLVYLHSRKFIRSMDGAKSAVLVRASRPILLPDIIGRSSSETRARKASFPFLPLIHFLLLSSKGDFSYFSSFCGVLCLLFFRTLFSLPRHSSAKRERARRRKGQRLRPLFIEAGNEQGLNSKMRCSGHPHLERRVSGFGPVAFPVRPSSGGACVGGVLPEIGLEALALPTSRQLMALGHDYYQKAPMKIHISHGGVCIFILGVLLSNTKKIEFTQRLPLGSELHMGKERSCLRGLDHLHGPTSHSICGNLMIYKPSLTKDRLIFSHDKELRADQLPINFPAEYENGKLEHFLHQWMIGFLRFHKNLWFTMFPEKRYFRERTSTTEVAIHTNPFTDLYASIGTGSSRTGGWYTTIMKLPFLFLIRIGFLLASLGGSRSLLRQLQKDKLRWN
SIO_010081: CusaM_p02
subclass of: SO_0000673
so part of: CusaM_p02
location: join(4099..4877,5839..6394)
location: region:4099-6394:1
so has part: feature:4099-4877:1:exon
so has part: feature:5839-6394:1:exon

YP_004849321.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4099-4877:1:exon

position:4877:1
position: 4877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5839-6394:1:exon

position:5839:1
position: 5839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CusaM_p02
type: Exon
subclass of: SO_0000147
RO_0002162: 3659
gene: ccmFc
locus tag: CusaM_p02
number: 1
SIO_010081: CusaM_p02
subclass of: SO_0000673
so part of: CusaM_p02
location: 4099..4877
location: region:4099-4877:1
so has part: feature:4099-4877:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4099-4877:1:exon

CusaM_p02
type: Intron
subclass of: SO_0000188
RO_0002162: 3659
gene: ccmFc
locus tag: CusaM_p02
SIO_010081: CusaM_p02
subclass of: SO_0000673
so part of: CusaM_p02
location: 4878..5838
location: region:4878-5838:1
so has part: feature:4878-5838:1:exon

position:4878:1
position: 4878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5838:1
position: 5838
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4878-5838:1:exon

CusaM_p02
type: Exon
subclass of: SO_0000147
RO_0002162: 3659
gene: ccmFc
locus tag: CusaM_p02
number: 2
SIO_010081: CusaM_p02
subclass of: SO_0000673
so part of: CusaM_p02
location: 5839..6394
location: region:5839-6394:1
so has part: feature:5839-6394:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5839-6394:1:exon

CusaM_p03
type: Exon
subclass of: SO_0000147
RO_0002162: 3659
gene: nad5
locus tag: CusaM_p03
number: 3
SIO_010081: CusaM_p03
subclass of: SO_0000673
so part of: CusaM_p03
location: 8302..8323
location: region:8302-8323:1
so has part: feature:8302-8323:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8302-8323:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 10214..10760
location: region:10214-10760:1
so has part: feature:10214-10760:1:region

position:10214:1
position: 10214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10760:1
position: 10760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10214-10760:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 83077..83115
location: region:83077-83115:1
so has part: feature:83077-83115:1:region

position:83077:1
position: 83077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:83115:1
position: 83115
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:83077-83115:1:region

CusaM_p04
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: nad1
locus tag: CusaM_p04
trans splicing: true
so part of: sequence
location: join(85329..85715,complement(1283939..1287949),1371658..1376169)
location: region:85329-1376169:1
so has part: feature:85329-85715:1:exon
so has part: feature:1283939-1287949:-1:exon
so has part: feature:1371658-1376169:1:exon
subclass of: SO_0000010

11123890
type: Gene
SIO_000068: ncbigene

position:85329:1
position: 85329
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1376169:1
position: 1376169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:85329-85715:1:exon

position:85715:1
position: 85715
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1283939-1287949:-1:exon

position:1283939:-1
position: 1283939
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1287949:-1
position: 1287949
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1371658-1376169:1:exon

position:1371658:1
position: 1371658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CusaM_p04
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3659
gene: nad1
locus tag: CusaM_p04
exception: RNA editing
trans splicing: true
codon start: 1
product: NADH dehydrogenase subunit 1
translation: MYIAVPAEILGIILPLLLGVAFLVLAERKVMAFVQRRKGPDVVGSFGLLQPLADGLKLMIKEPLSPSSANFSLFRMAPVATFMLSLVARAVVPFDYGIVLSDPNIGLLYLFAISSLGVYGIIIAGWSSNSKYAFLGALRSAAQMVPYEVSIGLILITVLICVGPRNSSEIVMAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYSSMGSALFFLGEYANMILMSGPCTSLSPGGWPPILDLPIFKKIPGSIWFSIKVILFLFLYIWVRAAFPRYRYDQLMGLGRKVFLPLSLARVVLVSGLSVTFQWLP
SIO_010081: CusaM_p04
subclass of: SO_0000673
so part of: CusaM_p04
location: join(85329..85715,complement(1287869..1287949),complement(1283939..1284130),1371658..1371716,1375911..1376169)
location: region:85329-1376169:1
so has part: feature:85329-85715:1:exon
so has part: feature:1287869-1287949:-1:exon
so has part: feature:1283939-1284130:-1:exon
so has part: feature:1371658-1371716:1:exon
so has part: feature:1375911-1376169:1:exon

YP_004849322.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:85329-85715:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1287869-1287949:-1:exon

position:1287869:-1
position: 1287869
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1283939-1284130:-1:exon

position:1284130:-1
position: 1284130
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1371658-1371716:1:exon

position:1371716:1
position: 1371716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1375911-1376169:1:exon

position:1375911:1
position: 1375911
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CusaM_p04
type: Exon
subclass of: SO_0000147
RO_0002162: 3659
gene: nad1
locus tag: CusaM_p04
number: 1
SIO_010081: CusaM_p04
subclass of: SO_0000673
so part of: CusaM_p04
location: 85329..85715
location: region:85329-85715:1
so has part: feature:85329-85715:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:85329-85715:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 98373..99163
location: region:98373-99163:1
so has part: feature:98373-99163:1:region

position:98373:1
position: 98373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:99163:1
position: 99163
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:98373-99163:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 102910..103030
location: region:102910-103030:1
so has part: feature:102910-103030:1:region

position:102910:1
position: 102910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:103030:1
position: 103030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:102910-103030:1:region

CusaM_t01
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: trnF-GAA
locus tag: CusaM_t01
so part of: sequence
location: complement(121133..121207)
location: region:121133-121207:-1
so has part: feature:121133-121207:-1:exon
subclass of: SO_0000663

11123899
type: Gene
SIO_000068: ncbigene

position:121133:-1
position: 121133
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:121207:-1
position: 121207
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:121133-121207:-1:exon

CusaM_t01
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3659
gene: trnF-GAA
locus tag: CusaM_t01
product: tRNA-Phe
note: anticodon:GAA; chloroplast-like
SIO_010081: CusaM_t01
subclass of: SO_0000673
so part of: CusaM_t01
location: complement(121133..121207)
location: region:121133-121207:-1
so has part: feature:121133-121207:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:121133-121207:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 132851..132916
location: region:132851-132916:1
so has part: feature:132851-132916:1:region

position:132851:1
position: 132851
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:132916:1
position: 132916
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:132851-132916:1:region

CusaM_p05
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: trnS-UGA
locus tag: CusaM_p05
note: anticodon:UGA
pseudo: true
so part of: sequence
location: 146836..146921
location: region:146836-146921:1
so has part: feature:146836-146921:1:exon

11123902
type: Gene
SIO_000068: ncbigene

position:146836:1
position: 146836
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:146921:1
position: 146921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:146836-146921:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 151785..151941
location: region:151785-151941:1
so has part: feature:151785-151941:1:region

position:151785:1
position: 151785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:151941:1
position: 151941
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:151785-151941:1:region

CusaM_r01
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: rrn5
locus tag: CusaM_r01
so part of: sequence
location: 166724..166837
location: region:166724-166837:1
so has part: feature:166724-166837:1:exon
subclass of: SO_0000573

11123907
type: Gene
SIO_000068: ncbigene

position:166724:1
position: 166724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:166837:1
position: 166837
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:166724-166837:1:exon

CusaM_r01
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 3659
gene: rrn5
locus tag: CusaM_r01
product: 5S ribosomal RNA
SIO_010081: CusaM_r01
subclass of: SO_0000673
so part of: CusaM_r01
location: 166724..166837
location: region:166724-166837:1
so has part: feature:166724-166837:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:166724-166837:1:exon

CusaM_r02
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: rrnS
locus tag: CusaM_r02
so part of: sequence
location: 167022..168846
location: region:167022-168846:1
so has part: feature:167022-168846:1:exon
subclass of: SO_0000573

11123911
type: Gene
SIO_000068: ncbigene

position:167022:1
position: 167022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:168846:1
position: 168846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:167022-168846:1:exon

CusaM_r02
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 3659
gene: rrnS
locus tag: CusaM_r02
product: small subunit ribosomal RNA
SIO_010081: CusaM_r02
subclass of: SO_0000673
so part of: CusaM_r02
location: 167022..168846
location: region:167022-168846:1
so has part: feature:167022-168846:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:167022-168846:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 194573..194666
location: region:194573-194666:1
so has part: feature:194573-194666:1:region

position:194573:1
position: 194573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:194666:1
position: 194666
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:194573-194666:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: rrnL gene fragment
so part of: sequence
location: complement(257015..257271)
location: region:257015-257271:-1
so has part: feature:257015-257271:-1:region

position:257015:-1
position: 257015
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:257271:-1
position: 257271
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:257015-257271:-1:region

CusaM_p06
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: rps7
locus tag: CusaM_p06
so part of: sequence
location: complement(261085..261531)
location: region:261085-261531:-1
so has part: feature:261085-261531:-1:exon
subclass of: SO_0000010

11123912
type: Gene
SIO_000068: ncbigene

position:261085:-1
position: 261085
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:261531:-1
position: 261531
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:261085-261531:-1:exon

CusaM_p06
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3659
gene: rps7
locus tag: CusaM_p06
codon start: 1
product: ribosomal protein S7
translation: MGGLDGEQKELIKKLVNFRMKEGKRTRVRAILYQTLNRPAQTERDGIKLMVEAVENIKPICEVEKVRVAATFYDVPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFDEILDAYRKRGIARKKRENLHRLASTNRSFAHFRWW
SIO_010081: CusaM_p06
subclass of: SO_0000673
so part of: CusaM_p06
location: complement(261085..261531)
location: region:261085-261531:-1
so has part: feature:261085-261531:-1:exon

YP_004849323.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:261085-261531:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 300502..300558
location: region:300502-300558:1
so has part: feature:300502-300558:1:region

position:300502:1
position: 300502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:300558:1
position: 300558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:300502-300558:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 320449..320545
location: region:320449-320545:1
so has part: feature:320449-320545:1:region

position:320449:1
position: 320449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:320545:1
position: 320545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:320449-320545:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 363204..363299
location: region:363204-363299:1
so has part: feature:363204-363299:1:region

position:363204:1
position: 363204
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:363299:1
position: 363299
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:363204-363299:1:region

CusaM_t02
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: trnH-GUG
locus tag: CusaM_t02
so part of: sequence
location: complement(367630..367703)
location: region:367630-367703:-1
so has part: feature:367630-367703:-1:exon
subclass of: SO_0000663

11123913
type: Gene
SIO_000068: ncbigene

position:367630:-1
position: 367630
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:367703:-1
position: 367703
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:367630-367703:-1:exon

CusaM_t02
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3659
gene: trnH-GUG
locus tag: CusaM_t02
product: tRNA-His
note: anticodon:GUG; chloroplast-like
SIO_010081: CusaM_t02
subclass of: SO_0000673
so part of: CusaM_t02
location: complement(367630..367703)
location: region:367630-367703:-1
so has part: feature:367630-367703:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:367630-367703:-1:exon

CusaM_p07
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: cob
locus tag: CusaM_p07
so part of: sequence
location: complement(377338..378504)
location: region:377338-378504:-1
so has part: feature:377338-378504:-1:exon
subclass of: SO_0000010

11123888
type: Gene
SIO_000068: ncbigene

position:377338:-1
position: 377338
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:378504:-1
position: 378504
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:377338-378504:-1:exon

CusaM_p07
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3659
gene: cob
locus tag: CusaM_p07
codon start: 1
product: apocytochrome b
translation: MTKRKQRFSLLKQPISSTLNQHLIDYPTPSNLSYWWGFGPLAGLCLVIQIVTGLFLAMHYTPHVDLAFNSVEHIMRDVSGGWLLRYMHANGASMFLIVVHLHIFRGLYHASYSSPREFVRCLGVIIFLLMIVTAFTGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHLLPFLLAGASLLHLAALHQYGSNNPLGVHSEMDKIAFYPYFYVKDLVGWVAFAIFFSVWIFYAPNVLGHPDNYIPANPMPTPPHIVPEWYFLPIHAILRSIPDKAGGVAAIAPVFICLLALPFSKSMYVRSSSFRPIHQGLFWLLLADCLLLGWIGCQPVEAPFVTMGQISPFLFFFFFAITPIPGRVGRGIPNSYTG
SIO_010081: CusaM_p07
subclass of: SO_0000673
so part of: CusaM_p07
location: complement(377338..378504)
location: region:377338-378504:-1
so has part: feature:377338-378504:-1:exon

YP_004849324.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:377338-378504:-1:exon

CusaM_t03
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: trnI-CAU
locus tag: CusaM_t03
so part of: sequence
location: 383634..383714
location: region:383634-383714:1
so has part: feature:383634-383714:1:exon
subclass of: SO_0000663

11123914
type: Gene
SIO_000068: ncbigene

position:383634:1
position: 383634
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:383714:1
position: 383714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:383634-383714:1:exon

CusaM_t03
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3659
gene: trnI-CAU
locus tag: CusaM_t03
product: tRNA-Ile
exception: RNA editing
note: anticodon:CAU; C assumed to be post-transcriptionally modified to lysidine, which pairs with A, not G, in potato (see PubMed 1698276)
codon recognized: CAU
SIO_010081: CusaM_t03
subclass of: SO_0000673
so part of: CusaM_t03
location: 383634..383714
location: region:383634-383714:1
so has part: feature:383634-383714:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:383634-383714:1:exon

CusaM_t04
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: trnW-CCA
locus tag: CusaM_t04
so part of: sequence
location: 396813..396886
location: region:396813-396886:1
so has part: feature:396813-396886:1:exon
subclass of: SO_0000663

11123855
type: Gene
SIO_000068: ncbigene

position:396813:1
position: 396813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:396886:1
position: 396886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:396813-396886:1:exon

CusaM_t04
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3659
gene: trnW-CCA
locus tag: CusaM_t04
product: tRNA-Trp
note: anticodon:CCA; chloroplast-like
SIO_010081: CusaM_t04
subclass of: SO_0000673
so part of: CusaM_t04
location: 396813..396886
location: region:396813-396886:1
so has part: feature:396813-396886:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:396813-396886:1:exon

CusaM_p03
type: Exon
subclass of: SO_0000147
RO_0002162: 3659
gene: nad5
locus tag: CusaM_p03
number: 4
SIO_010081: CusaM_p03
subclass of: SO_0000673
so part of: CusaM_p03
location: 417477..417871
location: region:417477-417871:1
so has part: feature:417477-417871:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:417477-417871:1:exon

CusaM_p03
type: Intron
subclass of: SO_0000188
RO_0002162: 3659
gene: nad5
locus tag: CusaM_p03
note: cis-spliced intron
number: 4
SIO_010081: CusaM_p03
subclass of: SO_0000673
so part of: CusaM_p03
location: 417872..419001
location: region:417872-419001:1
so has part: feature:417872-419001:1:exon

position:417872:1
position: 417872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:419001:1
position: 419001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:417872-419001:1:exon

CusaM_p03
type: Exon
subclass of: SO_0000147
RO_0002162: 3659
gene: nad5
locus tag: CusaM_p03
number: 5
SIO_010081: CusaM_p03
subclass of: SO_0000673
so part of: CusaM_p03
location: 419002..419145
location: region:419002-419145:1
so has part: feature:419002-419145:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:419002-419145:1:exon

CusaM_p08
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: atp4
locus tag: CusaM_p08
so part of: sequence
location: 419518..420114
location: region:419518-420114:1
so has part: feature:419518-420114:1:exon
subclass of: SO_0000010

11123856
type: Gene
SIO_000068: ncbigene

position:419518:1
position: 419518
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:420114:1
position: 420114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:419518-420114:1:exon

CusaM_p08
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3659
gene: atp4
locus tag: CusaM_p08
codon start: 1
product: ATPase subunit 4
translation: MRWSSTNMQARKMLFAAILSICALSSKKISIYNEEMIVASSFIGFIILSRKSLGKTFKATLDGRIQAIQEESQQFPNPNEVVPEESNEEQRLLRISLRICGTVVESLPMARYAPKCEKTVQAFLCRNLNVKSATLPNATSSRRIRLQDDLVTGFHFSVSERFVPGSTLKASIVELIREGLVVLRMVRVGGSLKNKSDK
SIO_010081: CusaM_p08
subclass of: SO_0000673
so part of: CusaM_p08
location: 419518..420114
location: region:419518-420114:1
so has part: feature:419518-420114:1:exon

YP_004849325.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:419518-420114:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 424337..424675
location: region:424337-424675:1
so has part: feature:424337-424675:1:region

position:424337:1
position: 424337
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:424675:1
position: 424675
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:424337-424675:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 430466..431597
location: region:430466-431597:1
so has part: feature:430466-431597:1:region

position:430466:1
position: 430466
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:431597:1
position: 431597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:430466-431597:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 444489..444617
location: region:444489-444617:1
so has part: feature:444489-444617:1:region

position:444489:1
position: 444489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:444617:1
position: 444617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:444489-444617:1:region

CusaM_p09
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: ccmFn
locus tag: CusaM_p09
so part of: sequence
location: complement(448949..450670)
location: region:448949-450670:-1
so has part: feature:448949-450670:-1:exon
subclass of: SO_0000010

11123857
type: Gene
SIO_000068: ncbigene

position:448949:-1
position: 448949
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:450670:-1
position: 450670
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:448949-450670:-1:exon

CusaM_p09
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3659
gene: ccmFn
locus tag: CusaM_p09
exception: RNA editing
codon start: 1
product: cytochrome c biogenesis FN
translation: MTIYEFFHYSLFPGLFVAFTYKKKEPPAFGAAPAFWFILLSFFGLSFRHIPNNLSNYNVLTANAPFFYQISGTWSNHEGSILSWCRIPSFYGFLLSYRGRPQSHNVSKRGGHRESLFYSFLSNFVKNPIRDLPRYEQESGAQLYTPFVLRTLVDSELRSRRNRTFDGPALFYAPLYPKMSFPPLGSRRSRGSREGKRTHPFLHLARDDKERASSIDEERIDGTLGIALFFSPFLSASSDPFLRNFFVSTEPLAESNPVPQDPISAIHPPCIYAGDVASAMGFALCRSKMMNGIVALHSPPMRKDAAEKNGTLLRSAGCVGSRITSELFTLFFKDVGPKCYPALFLRSNRSLLILLRRRFFAFSSLWTGGLVDTGREQAKPLVRNGKKETTTSLLSWTAGANTVVSDQDQEPMRIWILISRSFLTVGILPGSWWAHHELGRGGWWFRDPVENASFMPRVLATARIHSVILPLLHSWTSFLNILTFPCCVSGTFSIRSGLLAPVHSFATDDTRGIFLWRFFLIMTGISMILFSQMKQQASVRRTYKKEMVVARSTLVHLRHSARAQPRPLRLWKN
SIO_010081: CusaM_p09
subclass of: SO_0000673
so part of: CusaM_p09
location: complement(448949..450670)
location: region:448949-450670:-1
so has part: feature:448949-450670:-1:exon

YP_004849326.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:448949-450670:-1:exon

CusaM_t05
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: trnfM-CAU
locus tag: CusaM_t05
so part of: sequence
location: complement(455746..455819)
location: region:455746-455819:-1
so has part: feature:455746-455819:-1:exon
subclass of: SO_0000663

11123858
type: Gene
SIO_000068: ncbigene

position:455746:-1
position: 455746
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:455819:-1
position: 455819
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:455746-455819:-1:exon

CusaM_t05
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3659
gene: trnfM-CAU
locus tag: CusaM_t05
product: tRNA-Met
note: anticodon:CAU
SIO_010081: CusaM_t05
subclass of: SO_0000673
so part of: CusaM_t05
location: complement(455746..455819)
location: region:455746-455819:-1
so has part: feature:455746-455819:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:455746-455819:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 460402..463061
location: region:460402-463061:1
so has part: feature:460402-463061:1:region

position:460402:1
position: 460402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:463061:1
position: 463061
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:460402-463061:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: intact trnR embedded within larger tract of chloroplast-like DNA; possibly functional
so part of: sequence
location: 462351..462424
location: region:462351-462424:1
so has part: feature:462351-462424:1:region

position:462351:1
position: 462351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:462424:1
position: 462424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:462351-462424:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: intact trnN embedded within larger tract of chloroplast-like DNA; possibly functional
so part of: sequence
location: complement(462978..463049)
location: region:462978-463049:-1
so has part: feature:462978-463049:-1:region

position:462978:-1
position: 462978
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:463049:-1
position: 463049
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:462978-463049:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 463062..466895
location: region:463062-466895:1
so has part: feature:463062-466895:1:region

position:463062:1
position: 463062
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:466895:1
position: 466895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:463062-466895:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 468372..468451
location: region:468372-468451:1
so has part: feature:468372-468451:1:region

position:468372:1
position: 468372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:468451:1
position: 468451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:468372-468451:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 479857..480070
location: region:479857-480070:1
so has part: feature:479857-480070:1:region

position:479857:1
position: 479857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:480070:1
position: 480070
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:479857-480070:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 480857..480896
location: region:480857-480896:1
so has part: feature:480857-480896:1:region

position:480857:1
position: 480857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:480896:1
position: 480896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:480857-480896:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 482045..482103
location: region:482045-482103:1
so has part: feature:482045-482103:1:region

position:482045:1
position: 482045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:482103:1
position: 482103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:482045-482103:1:region

CusaM_t06
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: trnD-GUC
locus tag: CusaM_t06
so part of: sequence
location: complement(494333..494406)
location: region:494333-494406:-1
so has part: feature:494333-494406:-1:exon
subclass of: SO_0000663

11123859
type: Gene
SIO_000068: ncbigene

position:494333:-1
position: 494333
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:494406:-1
position: 494406
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:494333-494406:-1:exon

CusaM_t06
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3659
gene: trnD-GUC
locus tag: CusaM_t06
product: tRNA-Asp
note: anticodon:GUC; chloroplast-like
SIO_010081: CusaM_t06
subclass of: SO_0000673
so part of: CusaM_t06
location: complement(494333..494406)
location: region:494333-494406:-1
so has part: feature:494333-494406:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:494333-494406:-1:exon

CusaM_p10
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: rpl10
locus tag: CusaM_p10
so part of: sequence
location: 511067..511558
location: region:511067-511558:1
so has part: feature:511067-511558:1:exon
subclass of: SO_0000010

11123860
type: Gene
SIO_000068: ncbigene

position:511067:1
position: 511067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:511558:1
position: 511558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:511067-511558:1:exon

CusaM_p10
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3659
gene: rpl10
locus tag: CusaM_p10
codon start: 1
product: ribosomal protein L10
translation: MPFGISLLRRESLRRLILSGEERSPEILISFHSSGSTSKQWRKLKNPWFPGRTRTPFRPSSCSTGKKKGFFAQLAHSAGPTCILYLSEEGSDRLEFLPSSDSMDQDLLSLYGQYRSTLVDHMDVEKASDLNECSRSLFHFYLPSSYLSFVCSREEFDLGIPPK
SIO_010081: CusaM_p10
subclass of: SO_0000673
so part of: CusaM_p10
location: 511067..511558
location: region:511067-511558:1
so has part: feature:511067-511558:1:exon

YP_004849327.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:511067-511558:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 511615..512345
location: region:511615-512345:1
so has part: feature:511615-512345:1:region

position:511615:1
position: 511615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:512345:1
position: 512345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:511615-512345:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 562741..565483
location: region:562741-565483:1
so has part: feature:562741-565483:1:region

position:562741:1
position: 562741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:565483:1
position: 565483
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:562741-565483:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 568452..572554
location: region:568452-572554:1
so has part: feature:568452-572554:1:region

position:568452:1
position: 568452
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:572554:1
position: 572554
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:568452-572554:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: intact chloroplast-like trnM embedded within larger tract of chloroplast-like DNA; possibly functional
so part of: sequence
location: complement(571514..571586)
location: region:571514-571586:-1
so has part: feature:571514-571586:-1:region

position:571514:-1
position: 571514
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:571586:-1
position: 571586
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:571514-571586:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 598061..598106
location: region:598061-598106:1
so has part: feature:598061-598106:1:region

position:598061:1
position: 598061
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:598106:1
position: 598106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:598061-598106:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 608425..608604
location: region:608425-608604:1
so has part: feature:608425-608604:1:region

position:608425:1
position: 608425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:608604:1
position: 608604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:608425-608604:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 613322..613362
location: region:613322-613362:1
so has part: feature:613322-613362:1:region

position:613322:1
position: 613322
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:613362:1
position: 613362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:613322-613362:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 637148..643924
location: region:637148-643924:1
so has part: feature:637148-643924:1:region

position:637148:1
position: 637148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:643924:1
position: 643924
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:637148-643924:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 650012..650066
location: region:650012-650066:1
so has part: feature:650012-650066:1:region

position:650012:1
position: 650012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:650066:1
position: 650066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:650012-650066:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 656596..656642
location: region:656596-656642:1
so has part: feature:656596-656642:1:region

position:656596:1
position: 656596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:656642:1
position: 656642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:656596-656642:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 660598..662801
location: region:660598-662801:1
so has part: feature:660598-662801:1:region

position:660598:1
position: 660598
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:662801:1
position: 662801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:660598-662801:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: intact chloroplast-like trnV embedded within larger tract of chloroplast-like DNA; possibly functional
so part of: sequence
location: 660762..660833
location: region:660762-660833:1
so has part: feature:660762-660833:1:region

position:660762:1
position: 660762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:660833:1
position: 660833
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:660762-660833:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 662802..662856
location: region:662802-662856:1
so has part: feature:662802-662856:1:region

position:662802:1
position: 662802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:662856:1
position: 662856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:662802-662856:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 662882..665771
location: region:662882-665771:1
so has part: feature:662882-665771:1:region

position:662882:1
position: 662882
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:665771:1
position: 665771
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:662882-665771:1:region

CusaM_t07
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: trnM
locus tag: CusaM_t07
so part of: sequence
location: complement(689952..690024)
location: region:689952-690024:-1
so has part: feature:689952-690024:-1:exon
subclass of: SO_0000663

11123861
type: Gene
SIO_000068: ncbigene

position:689952:-1
position: 689952
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:690024:-1
position: 690024
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:689952-690024:-1:exon

CusaM_t07
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3659
gene: trnM
locus tag: CusaM_t07
product: tRNA-Met
note: anticodon:CAU; chloroplast-like
SIO_010081: CusaM_t07
subclass of: SO_0000673
so part of: CusaM_t07
location: complement(689952..690024)
location: region:689952-690024:-1
so has part: feature:689952-690024:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:689952-690024:-1:exon

CusaM_p11
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: nad7
locus tag: CusaM_p11
so part of: sequence
location: 696357..706848
location: region:696357-706848:1
so has part: feature:696357-706848:1:exon
subclass of: SO_0000010

11123862
type: Gene
SIO_000068: ncbigene

position:696357:1
position: 696357
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:706848:1
position: 706848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:696357-706848:1:exon

CusaM_p11
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3659
gene: nad7
locus tag: CusaM_p11
codon start: 1
product: NADH dehydrogenase subunit 7
translation: MTTRNRQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYSDRSDYVSTMAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAMDVGASTPFLWAFEEREKLFEFYERVSGARMHASFIRPGGVAQDLPLGLCRDIDSFTQQFASRIDELEEMSTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGPGVCWDLRRAAPYDVHDQLDPDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQCPNQMPSGMIKADDRKLCPPSRSRMKLSMESSIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR
SIO_010081: CusaM_p11
subclass of: SO_0000673
so part of: CusaM_p11
location: join(696357..696499,697805..697873,699381..699847,701803..702046,706587..706848)
location: region:696357-706848:1
so has part: feature:696357-696499:1:exon
so has part: feature:697805-697873:1:exon
so has part: feature:699381-699847:1:exon
so has part: feature:701803-702046:1:exon
so has part: feature:706587-706848:1:exon

YP_004849328.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:696357-696499:1:exon

position:696499:1
position: 696499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:697805-697873:1:exon

position:697805:1
position: 697805
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:697873:1
position: 697873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:699381-699847:1:exon

position:699381:1
position: 699381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:699847:1
position: 699847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:701803-702046:1:exon

position:701803:1
position: 701803
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:702046:1
position: 702046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:706587-706848:1:exon

position:706587:1
position: 706587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CusaM_p11
type: Exon
subclass of: SO_0000147
RO_0002162: 3659
gene: nad7
locus tag: CusaM_p11
number: 1
SIO_010081: CusaM_p11
subclass of: SO_0000673
so part of: CusaM_p11
location: 696357..696499
location: region:696357-696499:1
so has part: feature:696357-696499:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:696357-696499:1:exon

CusaM_p11
type: Intron
subclass of: SO_0000188
RO_0002162: 3659
gene: nad7
locus tag: CusaM_p11
number: 1
SIO_010081: CusaM_p11
subclass of: SO_0000673
so part of: CusaM_p11
location: 696500..697804
location: region:696500-697804:1
so has part: feature:696500-697804:1:exon

position:696500:1
position: 696500
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:697804:1
position: 697804
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:696500-697804:1:exon

CusaM_p11
type: Exon
subclass of: SO_0000147
RO_0002162: 3659
gene: nad7
locus tag: CusaM_p11
number: 2
SIO_010081: CusaM_p11
subclass of: SO_0000673
so part of: CusaM_p11
location: 697805..697873
location: region:697805-697873:1
so has part: feature:697805-697873:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:697805-697873:1:exon

CusaM_p11
type: Intron
subclass of: SO_0000188
RO_0002162: 3659
gene: nad7
locus tag: CusaM_p11
number: 2
SIO_010081: CusaM_p11
subclass of: SO_0000673
so part of: CusaM_p11
location: 697874..699380
location: region:697874-699380:1
so has part: feature:697874-699380:1:exon

position:697874:1
position: 697874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:699380:1
position: 699380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:697874-699380:1:exon

CusaM_p11
type: Exon
subclass of: SO_0000147
RO_0002162: 3659
gene: nad7
locus tag: CusaM_p11
number: 3
SIO_010081: CusaM_p11
subclass of: SO_0000673
so part of: CusaM_p11
location: 699381..699847
location: region:699381-699847:1
so has part: feature:699381-699847:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:699381-699847:1:exon

CusaM_p11
type: Intron
subclass of: SO_0000188
RO_0002162: 3659
gene: nad7
locus tag: CusaM_p11
number: 3
SIO_010081: CusaM_p11
subclass of: SO_0000673
so part of: CusaM_p11
location: 699848..701802
location: region:699848-701802:1
so has part: feature:699848-701802:1:exon

position:699848:1
position: 699848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:701802:1
position: 701802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:699848-701802:1:exon

CusaM_p11
type: Exon
subclass of: SO_0000147
RO_0002162: 3659
gene: nad7
locus tag: CusaM_p11
number: 4
SIO_010081: CusaM_p11
subclass of: SO_0000673
so part of: CusaM_p11
location: 701803..702046
location: region:701803-702046:1
so has part: feature:701803-702046:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:701803-702046:1:exon

CusaM_p11
type: Intron
subclass of: SO_0000188
RO_0002162: 3659
gene: nad7
locus tag: CusaM_p11
number: 4
SIO_010081: CusaM_p11
subclass of: SO_0000673
so part of: CusaM_p11
location: 702047..706586
location: region:702047-706586:1
so has part: feature:702047-706586:1:exon

position:702047:1
position: 702047
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:706586:1
position: 706586
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:702047-706586:1:exon

CusaM_p11
type: Exon
subclass of: SO_0000147
RO_0002162: 3659
gene: nad7
locus tag: CusaM_p11
number: 5
SIO_010081: CusaM_p11
subclass of: SO_0000673
so part of: CusaM_p11
location: 706587..706848
location: region:706587-706848:1
so has part: feature:706587-706848:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:706587-706848:1:exon

CusaM_p12
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: ccmB
locus tag: CusaM_p12
so part of: sequence
location: 710286..710906
location: region:710286-710906:1
so has part: feature:710286-710906:1:exon
subclass of: SO_0000010

11123863
type: Gene
SIO_000068: ncbigene

position:710286:1
position: 710286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:710906:1
position: 710906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:710286-710906:1:exon

CusaM_p12
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3659
gene: ccmB
locus tag: CusaM_p12
codon start: 1
product: cytochrome c biogenesis B
translation: MRRLFLELYHKRIFPSTPITSFSPFLSYIVVTPLMLGFEKDFSCHSHLGPIRIPPLFPFPPAPFPRNEKEDGTLELYYLSAYCLPKILLLQLLGHWVIQISCLFCGFPMLKLPYQFGRSGMDRLNILLGSLVLTLLCGIHSRSALGITSSRGWNSSQNPTTSPTSLPPTLSRTSIETEWFHVPSSIGYSSPFVSLFPISVSLSLQD
SIO_010081: CusaM_p12
subclass of: SO_0000673
so part of: CusaM_p12
location: 710286..710906
location: region:710286-710906:1
so has part: feature:710286-710906:1:exon

YP_004849329.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:710286-710906:1:exon

CusaM_p13
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: nad3
locus tag: CusaM_p13
so part of: sequence
location: 711309..711665
location: region:711309-711665:1
so has part: feature:711309-711665:1:exon
subclass of: SO_0000010

11123864
type: Gene
SIO_000068: ncbigene

position:711309:1
position: 711309
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:711665:1
position: 711665
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:711309-711665:1:exon

CusaM_p13
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3659
gene: nad3
locus tag: CusaM_p13
codon start: 1
product: NADH dehydrogenase subunit 3
translation: MSEFAPICIYLVISPLVSLIPLGLPFPFSSNSSTYPEKLSAYECGFDPSGDARSRFDIRFYLVSILFIILDPEVTFSFPWAVPLNKIDLFGSWSMMAFLLILTIGFLYEWKRGASDRE
SIO_010081: CusaM_p13
subclass of: SO_0000673
so part of: CusaM_p13
location: 711309..711665
location: region:711309-711665:1
so has part: feature:711309-711665:1:exon

YP_004849330.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:711309-711665:1:exon

CusaM_p14
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: rps12
locus tag: CusaM_p14
so part of: sequence
location: 711683..712060
location: region:711683-712060:1
so has part: feature:711683-712060:1:exon
subclass of: SO_0000010

11123865
type: Gene
SIO_000068: ncbigene

position:711683:1
position: 711683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:712060:1
position: 712060
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:711683-712060:1:exon

CusaM_p14
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3659
gene: rps12
locus tag: CusaM_p14
codon start: 1
product: ribosomal protein S12
translation: MPTLNQLIRHGREEKRRTDRTRASDQCPQKQGVRPRLATRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIPDRRRGRSKYGAEKPKSI
SIO_010081: CusaM_p14
subclass of: SO_0000673
so part of: CusaM_p14
location: 711683..712060
location: region:711683-712060:1
so has part: feature:711683-712060:1:exon

YP_004849331.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:711683-712060:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 719499..719638
location: region:719499-719638:1
so has part: feature:719499-719638:1:region

position:719499:1
position: 719499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:719638:1
position: 719638
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:719499-719638:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 721188..721415
location: region:721188-721415:1
so has part: feature:721188-721415:1:region

position:721188:1
position: 721188
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:721415:1
position: 721415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:721188-721415:1:region

CusaM_p15
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: rpl16
locus tag: CusaM_p15
so part of: sequence
location: complement(736214..736648)
location: region:736214-736648:-1
so has part: feature:736214-736648:-1:exon
subclass of: SO_0000010

11123866
type: Gene
SIO_000068: ncbigene

position:736214:-1
position: 736214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:736648:-1
position: 736648
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:736214-736648:-1:exon

CusaM_p15
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3659
gene: rpl16
locus tag: CusaM_p15
exception: RNA editing
note: start codon based on PubMed IDs 8193306 and 9327595
codon start: 1
product: ribosomal protein L16
translation: MLYPKRTKYSKYRKGRCSRGCKPDGTQLGFGRYGTQSCRAGRLSYRAIEAARRAMSGQFHRAMSGQFRRNGQIWVRVLADLPITGKPTEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAATLAAHKPCSSTKFVQWS
SIO_010081: CusaM_p15
subclass of: SO_0000673
so part of: CusaM_p15
location: complement(736214..736648)
location: region:736214-736648:-1
so has part: feature:736214-736648:-1:exon

YP_004849332.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:736214-736648:-1:exon

CusaM_p16
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: rps3
locus tag: CusaM_p16
so part of: sequence
location: complement(736620..742986)
location: region:736620-742986:-1
so has part: feature:736620-742986:-1:exon
subclass of: SO_0000010

11123867
type: Gene
SIO_000068: ncbigene

position:736620:-1
position: 736620
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:742986:-1
position: 742986
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:736620-742986:-1:exon

CusaM_p16
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3659
gene: rps3
locus tag: CusaM_p16
codon start: 1
product: ribosomal protein S3
translation: MARKGNKISVRLDQNRSSDSSRFSDYYYGKSLYQDVNLRSYFGSIRPPERLTFGFRLGRCIILHFPKRTFIHFFLPRRPRGLKGGEKSKPGKEEKGRWWAFGKVGPIGCLHSSEDREEERKEEEFHAAPLKTPCSFGGVRTPHLELDLLPQDKDALEAEKRVESIRLSDREKQKAIRIWPKKKEGYGYHDRSPSRKILLSKLLRVSGGAFKHPKYAGVVNDIAFLIENDDSFRKTKLFKFFFPNQSRSDGPTSHLLKITLPAVRSSFHYLVMQYLLNTKNKMHFDPVYVLNHFVAPGVAEPSTQGGANTQGRSLDKRIRSRIAFFLESSTTLTLAEAKKRLTHFIRQGNDLRFAGTRKRSISLFPFFGATITLSSIKKKQEHELDGTAEWDREHEGFSSINKSFASKRVENSSRGAVRSPKDFPLVELGAAICEREGMDKNLFFEDTREELLGQLRIKSWNLMGKDKVIELIEKFIDLGWIGELIKGIEMMIEIILRNRRIPVGYNSYLNEVQKMRSFLSNRTKTNTLIESVKIKSVYQSASPIAQDISFQLRKKTRSFRSILSQIVQDIPFVMNKGVEGIRICCSGRSEGAEIARTECGKYGKTSRNVFHQKIDYAPAEVSTRYGISGVKVWISYIKKKKEGVISETYEI
SIO_010081: CusaM_p16
subclass of: SO_0000673
so part of: CusaM_p16
location: complement(join(736620..738501,742913..742986))
location: region:736620-742986:-1
so has part: feature:742913-742986:-1:exon
so has part: feature:736620-738501:-1:exon

YP_004849333.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:742913-742986:-1:exon

position:742913:-1
position: 742913
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:736620-738501:-1:exon

position:738501:-1
position: 738501
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CusaM_p16
type: Exon
subclass of: SO_0000147
RO_0002162: 3659
gene: rps3
locus tag: CusaM_p16
number: 2
SIO_010081: CusaM_p16
subclass of: SO_0000673
so part of: CusaM_p16
location: complement(736620..738501)
location: region:736620-738501:-1
so has part: feature:736620-738501:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:736620-738501:-1:exon

CusaM_p16
type: Intron
subclass of: SO_0000188
RO_0002162: 3659
gene: rps3
locus tag: CusaM_p16
SIO_010081: CusaM_p16
subclass of: SO_0000673
so part of: CusaM_p16
location: complement(738502..742912)
location: region:738502-742912:-1
so has part: feature:738502-742912:-1:exon

position:738502:-1
position: 738502
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:742912:-1
position: 742912
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:738502-742912:-1:exon

CusaM_p16
type: Exon
subclass of: SO_0000147
RO_0002162: 3659
gene: rps3
locus tag: CusaM_p16
number: 1
SIO_010081: CusaM_p16
subclass of: SO_0000673
so part of: CusaM_p16
location: complement(742913..742986)
location: region:742913-742986:-1
so has part: feature:742913-742986:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:742913-742986:-1:exon

CusaM_p17
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: rps4
locus tag: CusaM_p17
so part of: sequence
location: 765120..766202
location: region:765120-766202:1
so has part: feature:765120-766202:1:exon
subclass of: SO_0000010

11123868
type: Gene
SIO_000068: ncbigene

position:765120:1
position: 765120
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:766202:1
position: 766202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:765120-766202:1:exon

CusaM_p17
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3659
gene: rps4
locus tag: CusaM_p17
exception: RNA editing
codon start: 1
product: ribosomal protein S4
translation: MRCGERDERRYALPALRFQTCRLLLGNVRKRELTIIQRRILRNLRNKKRSIKRKIYPRENLNSYIQSQTTRKLPLFHGDLPITEMHRGRERTSYIPFPLNPETRSDVIPVRLHFSSTIPQARQPISHRRVCVNKGMVKITHFQVSHGDLISFQENEARIRGSEIRRSFYKEISVDKIIGKFLDHPVRMWRRNKREWFHLLKTKRGCRLLRKSRFLQELRSSMQEEDLERTKKFGSEKVCLGSSFAEHKRMKRNLYHFQSLFLSNRRKEKNLNLPTRRRSPIENNSSFYSNSTYCSASPHQFTMKSKIKSLSLPTHYSEVNHRTLKAVVSYGPNIGHIPHDIRLKDPNLPLRSGNGRGQNI
SIO_010081: CusaM_p17
subclass of: SO_0000673
so part of: CusaM_p17
location: 765120..766202
location: region:765120-766202:1
so has part: feature:765120-766202:1:exon

YP_004849334.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:765120-766202:1:exon

CusaM_p18
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: nad6
locus tag: CusaM_p18
so part of: sequence
location: 767315..767938
location: region:767315-767938:1
so has part: feature:767315-767938:1:exon
subclass of: SO_0000010

11123869
type: Gene
SIO_000068: ncbigene

position:767315:1
position: 767315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:767938:1
position: 767938
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:767315-767938:1:exon

CusaM_p18
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3659
gene: nad6
locus tag: CusaM_p18
codon start: 1
product: NADH dehydrogenase subunit 6
translation: MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTTSLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLLSSLILLVAMIGAIVLTMHRTTHSAVKRQDVFRRNALDFRRTIMRRTTEPLTIY
SIO_010081: CusaM_p18
subclass of: SO_0000673
so part of: CusaM_p18
location: 767315..767938
location: region:767315-767938:1
so has part: feature:767315-767938:1:exon

YP_004849335.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:767315-767938:1:exon

CusaM_p19
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: sdh3
locus tag: CusaM_p19
so part of: sequence
location: 793582..793899
location: region:793582-793899:1
so has part: feature:793582-793899:1:exon
subclass of: SO_0000010

11123870
type: Gene
SIO_000068: ncbigene

position:793582:1
position: 793582
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:793899:1
position: 793899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:793582-793899:1:exon

CusaM_p19
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3659
gene: sdh3
locus tag: CusaM_p19
codon start: 1
product: succinate dehydrogenase subunit 3
translation: MNILRPLSPHLPIYKAQLTSTFPISHRISGAFLATLVFFFYLLCLKMGLICFTYSNFYGFFFYSAKLILISVEITALALSYHLYNGVRHLFHDFSFVTTSKKNIL
SIO_010081: CusaM_p19
subclass of: SO_0000673
so part of: CusaM_p19
location: 793582..793899
location: region:793582-793899:1
so has part: feature:793582-793899:1:exon

YP_004849336.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:793582-793899:1:exon

CusaM_p20
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: nad2
locus tag: CusaM_p20
trans splicing: true
so part of: sequence
location: join(797484..799273,1000430..1007135)
location: region:797484-1007135:1
so has part: feature:797484-799273:1:exon
so has part: feature:1000430-1007135:1:exon
subclass of: SO_0000010

11123895
type: Gene
SIO_000068: ncbigene

position:797484:1
position: 797484
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1007135:1
position: 1007135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:797484-799273:1:exon

position:799273:1
position: 799273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1000430-1007135:1:exon

position:1000430:1
position: 1000430
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CusaM_p20
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3659
gene: nad2
locus tag: CusaM_p20
trans splicing: true
codon start: 1
product: NADH dehydrogenase subunit 2
translation: MFNLFLAVSPEIFLINATFILLIHGVVFSTSKKYSYPPLVSNVGWLGLLSVLITLLLLAAGAPLLTIGHLFWNHFFRRDNFTYFCQILLLLSTAGTISMCFDSFFKERFDAFEFIVLIPLPTRSMLFMISAHDSISMYLAIEPQSLCFYVMAASKRKSEFSTEAGSKYLILGAFSSGILLFGCSMIYGSTGATHFDQLAKILTGYEITGARSSGIFMGILSIAVGFLFKITAVPFHMWAPDIYEGSPTPVTAFLSIAPKISIFANISRLSIYGSYGATLQEIFFFCSIASMILGALAAMAQTKVKRPLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYVLMTIDAFAIVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIGRFYYIRLAKIMFFDTPRTWILYEPMDRDKSLLLAMTSSFITSSFPYPSPLFSVTHQMALSSYL
SIO_010081: CusaM_p20
subclass of: SO_0000673
so part of: CusaM_p20
location: join(797484..797636,798882..799273,1000430..1000590,1004899..1005470,1006947..1007135)
location: region:797484-1007135:1
so has part: feature:797484-797636:1:exon
so has part: feature:798882-799273:1:exon
so has part: feature:1000430-1000590:1:exon
so has part: feature:1004899-1005470:1:exon
so has part: feature:1006947-1007135:1:exon

YP_004849337.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:797484-797636:1:exon

position:797636:1
position: 797636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:798882-799273:1:exon

position:798882:1
position: 798882
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1000430-1000590:1:exon

position:1000590:1
position: 1000590
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1004899-1005470:1:exon

position:1004899:1
position: 1004899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1005470:1
position: 1005470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1006947-1007135:1:exon

position:1006947:1
position: 1006947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CusaM_p20
type: Exon
subclass of: SO_0000147
RO_0002162: 3659
gene: nad2
locus tag: CusaM_p20
number: 1
SIO_010081: CusaM_p20
subclass of: SO_0000673
so part of: CusaM_p20
location: 797484..797636
location: region:797484-797636:1
so has part: feature:797484-797636:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:797484-797636:1:exon

CusaM_p20
type: Intron
subclass of: SO_0000188
RO_0002162: 3659
gene: nad2
locus tag: CusaM_p20
note: cis-spliced intron
number: 1
SIO_010081: CusaM_p20
subclass of: SO_0000673
so part of: CusaM_p20
location: 797637..798881
location: region:797637-798881:1
so has part: feature:797637-798881:1:exon

position:797637:1
position: 797637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:798881:1
position: 798881
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:797637-798881:1:exon

CusaM_p20
type: Exon
subclass of: SO_0000147
RO_0002162: 3659
gene: nad2
locus tag: CusaM_p20
number: 2
SIO_010081: CusaM_p20
subclass of: SO_0000673
so part of: CusaM_p20
location: 798882..799273
location: region:798882-799273:1
so has part: feature:798882-799273:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:798882-799273:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 803039..803214
location: region:803039-803214:1
so has part: feature:803039-803214:1:region

position:803039:1
position: 803039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:803214:1
position: 803214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:803039-803214:1:region

CusaM_r03
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: rrnL
locus tag: CusaM_r03
so part of: sequence
location: complement(833044..836629)
location: region:833044-836629:-1
so has part: feature:833044-836629:-1:exon
subclass of: SO_0000573

11123916
type: Gene
SIO_000068: ncbigene

position:833044:-1
position: 833044
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:836629:-1
position: 836629
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:833044-836629:-1:exon

CusaM_r03
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 3659
gene: rrnL
locus tag: CusaM_r03
product: large subunit ribosomal RNA
SIO_010081: CusaM_r03
subclass of: SO_0000673
so part of: CusaM_r03
location: complement(833044..836629)
location: region:833044-836629:-1
so has part: feature:833044-836629:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:833044-836629:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 838894..840389
location: region:838894-840389:1
so has part: feature:838894-840389:1:region

position:838894:1
position: 838894
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:840389:1
position: 840389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:838894-840389:1:region

CusaM_t08
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: trnQ-UUG
locus tag: CusaM_t08
so part of: sequence
location: complement(840985..841056)
location: region:840985-841056:-1
so has part: feature:840985-841056:-1:exon
subclass of: SO_0000663

11123871
type: Gene
SIO_000068: ncbigene

position:840985:-1
position: 840985
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:841056:-1
position: 841056
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:840985-841056:-1:exon

CusaM_t08
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3659
gene: trnQ-UUG
locus tag: CusaM_t08
product: tRNA-Gln
note: anticodon:UUG
SIO_010081: CusaM_t08
subclass of: SO_0000673
so part of: CusaM_t08
location: complement(840985..841056)
location: region:840985-841056:-1
so has part: feature:840985-841056:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:840985-841056:-1:exon

CusaM_t09
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: trnG-GCC
locus tag: CusaM_t09
so part of: sequence
location: complement(847858..847929)
location: region:847858-847929:-1
so has part: feature:847858-847929:-1:exon
subclass of: SO_0000663

11123872
type: Gene
SIO_000068: ncbigene

position:847858:-1
position: 847858
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:847929:-1
position: 847929
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:847858-847929:-1:exon

CusaM_t09
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3659
gene: trnG-GCC
locus tag: CusaM_t09
product: tRNA-Gly
note: anticodon:GCC
SIO_010081: CusaM_t09
subclass of: SO_0000673
so part of: CusaM_t09
location: complement(847858..847929)
location: region:847858-847929:-1
so has part: feature:847858-847929:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:847858-847929:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 853066..853282
location: region:853066-853282:1
so has part: feature:853066-853282:1:region

position:853066:1
position: 853066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:853282:1
position: 853282
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:853066-853282:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 868925..879139
location: region:868925-879139:1
so has part: feature:868925-879139:1:region

position:868925:1
position: 868925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:879139:1
position: 879139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:868925-879139:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: intact chloroplast-like trnD embedded within larger tract of chloroplast-like DNA; possibly functional
so part of: sequence
location: 868957..869030
location: region:868957-869030:1
so has part: feature:868957-869030:1:region

position:868957:1
position: 868957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:869030:1
position: 869030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:868957-869030:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: intact chloroplast-like trnC embedded within larger tract of chloroplast-like DNA; possibly functional
so part of: sequence
location: complement(870678..870749)
location: region:870678-870749:-1
so has part: feature:870678-870749:-1:region

position:870678:-1
position: 870678
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:870749:-1
position: 870749
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:870678-870749:-1:region

CusaM_r04
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: rrn5
locus tag: CusaM_r04
so part of: sequence
location: 917679..917792
location: region:917679-917792:1
so has part: feature:917679-917792:1:exon
subclass of: SO_0000573

11123873
type: Gene
SIO_000068: ncbigene

position:917679:1
position: 917679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:917792:1
position: 917792
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:917679-917792:1:exon

CusaM_r04
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 3659
gene: rrn5
locus tag: CusaM_r04
product: 5S ribosomal RNA
SIO_010081: CusaM_r04
subclass of: SO_0000673
so part of: CusaM_r04
location: 917679..917792
location: region:917679-917792:1
so has part: feature:917679-917792:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:917679-917792:1:exon

CusaM_r05
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: rrnS
locus tag: CusaM_r05
so part of: sequence
location: 917977..919801
location: region:917977-919801:1
so has part: feature:917977-919801:1:exon
subclass of: SO_0000573

11123874
type: Gene
SIO_000068: ncbigene

position:917977:1
position: 917977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:919801:1
position: 919801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:917977-919801:1:exon

CusaM_r05
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 3659
gene: rrnS
locus tag: CusaM_r05
product: small subunit ribosomal RNA
SIO_010081: CusaM_r05
subclass of: SO_0000673
so part of: CusaM_r05
location: 917977..919801
location: region:917977-919801:1
so has part: feature:917977-919801:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:917977-919801:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 931590..937672
location: region:931590-937672:1
so has part: feature:931590-937672:1:region

position:931590:1
position: 931590
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:937672:1
position: 937672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:931590-937672:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: intact chloroplast-like trnW embedded within larger tract of chloroplast-like DNA; possibly functional
so part of: sequence
location: complement(933597..933670)
location: region:933597-933670:-1
so has part: feature:933597-933670:-1:region

position:933597:-1
position: 933597
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:933670:-1
position: 933670
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:933597-933670:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: intact chloroplast-like trnP embedded within larger tract of chloroplast-like DNA; possibly functional
so part of: sequence
location: complement(933854..933927)
location: region:933854-933927:-1
so has part: feature:933854-933927:-1:region

position:933854:-1
position: 933854
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:933927:-1
position: 933927
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:933854-933927:-1:region

CusaM_p21
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: mttB
locus tag: CusaM_p21
note: synonyms: orfX, tatC, ymf16
so part of: sequence
location: <948629..>949408
location: region:948629-949408:1
so has part: feature:948629-949408:1:exon
subclass of: SO_0000010

11123875
type: Gene
SIO_000068: ncbigene

position:948629:1
position: 948629
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:949408:1
position: 949408
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:948629-949408:1:exon

CusaM_p21
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3659
gene: mttB
locus tag: CusaM_p21
note: start and stop codons not determined
codon start: 1
product: transport membrane protein
translation: IYPLNYSTISYEFHFAPETIIGEVRIRFVRILIGLALTWFTRYWFPEELISPLAKPFLTLPLDSYFVCTQSTEAFPTYLAMSSIACSYFVFPLISHQIWCFLIPSCYGEQRTKYNLFLYLSGSRFSLFLFLSLPRVVPNVWHFPYFVGATSTNSLMIKLQPKIYDHIMLTVRISFILSVCSQVPVIVIRLPELRGLSVETFTNNRRFLMVFPLFTAALSTPPDIWCQIVAPFLISLMMELAIFVASIVQVRSEGWTSGMR
SIO_010081: CusaM_p21
subclass of: SO_0000673
so part of: CusaM_p21
location: <948629..>949408
location: region:948629-949408:1
so has part: feature:948629-949408:1:exon

YP_004849338.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:948629-949408:1:exon

CusaM_t10
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: trnF-GAA
locus tag: CusaM_t10
so part of: sequence
location: 979595..979669
location: region:979595-979669:1
so has part: feature:979595-979669:1:exon
subclass of: SO_0000663

11123876
type: Gene
SIO_000068: ncbigene

position:979595:1
position: 979595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:979669:1
position: 979669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:979595-979669:1:exon

CusaM_t10
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3659
gene: trnF-GAA
locus tag: CusaM_t10
product: tRNA-Phe
note: anticodon:GAA; chloroplast-like
SIO_010081: CusaM_t10
subclass of: SO_0000673
so part of: CusaM_t10
location: 979595..979669
location: region:979595-979669:1
so has part: feature:979595-979669:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:979595-979669:1:exon

CusaM_t11
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: trnY-GUA
locus tag: CusaM_t11
so part of: sequence
location: 998083..998165
location: region:998083-998165:1
so has part: feature:998083-998165:1:exon
subclass of: SO_0000663

11123877
type: Gene
SIO_000068: ncbigene

position:998083:1
position: 998083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:998165:1
position: 998165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:998083-998165:1:exon

CusaM_t11
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3659
gene: trnY-GUA
locus tag: CusaM_t11
product: tRNA-Tyr
note: anticodon:GUA
SIO_010081: CusaM_t11
subclass of: SO_0000673
so part of: CusaM_t11
location: 998083..998165
location: region:998083-998165:1
so has part: feature:998083-998165:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:998083-998165:1:exon

CusaM_p20
type: Exon
subclass of: SO_0000147
RO_0002162: 3659
gene: nad2
locus tag: CusaM_p20
number: 3
SIO_010081: CusaM_p20
subclass of: SO_0000673
so part of: CusaM_p20
location: 1000430..1000590
location: region:1000430-1000590:1
so has part: feature:1000430-1000590:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1000430-1000590:1:exon

CusaM_p20
type: Intron
subclass of: SO_0000188
RO_0002162: 3659
gene: nad2
locus tag: CusaM_p20
note: cis-spliced intron
number: 3
SIO_010081: CusaM_p20
subclass of: SO_0000673
so part of: CusaM_p20
location: 1000591..1004898
location: region:1000591-1004898:1
so has part: feature:1000591-1004898:1:exon

position:1000591:1
position: 1000591
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1004898:1
position: 1004898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1000591-1004898:1:exon

CusaM_p20
type: Exon
subclass of: SO_0000147
RO_0002162: 3659
gene: nad2
locus tag: CusaM_p20
number: 4
SIO_010081: CusaM_p20
subclass of: SO_0000673
so part of: CusaM_p20
location: 1004899..1005470
location: region:1004899-1005470:1
so has part: feature:1004899-1005470:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1004899-1005470:1:exon

CusaM_p20
type: Intron
subclass of: SO_0000188
RO_0002162: 3659
gene: nad2
locus tag: CusaM_p20
note: cis-spliced intron
number: 4
SIO_010081: CusaM_p20
subclass of: SO_0000673
so part of: CusaM_p20
location: 1005471..1006946
location: region:1005471-1006946:1
so has part: feature:1005471-1006946:1:exon

position:1005471:1
position: 1005471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1006946:1
position: 1006946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1005471-1006946:1:exon

CusaM_p20
type: Exon
subclass of: SO_0000147
RO_0002162: 3659
gene: nad2
locus tag: CusaM_p20
number: 5
SIO_010081: CusaM_p20
subclass of: SO_0000673
so part of: CusaM_p20
location: 1006947..1007135
location: region:1006947-1007135:1
so has part: feature:1006947-1007135:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1006947-1007135:1:exon

CusaM_p22
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: rps19
locus tag: CusaM_p22
pseudo: true
so part of: sequence
location: complement(1022467..1022545)
location: region:1022467-1022545:-1
so has part: feature:1022467-1022545:-1:exon

11123878
type: Gene
SIO_000068: ncbigene

position:1022467:-1
position: 1022467
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1022545:-1
position: 1022545
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1022467-1022545:-1:exon

CusaM_p23
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
gene: rpl2
locus tag: CusaM_p23
note: degenerate portion of rpl2 exon 2 (see PubMed ID 11719578)
pseudo: true
so part of: sequence
location: complement(1022549..1023027)
location: region:1022549-1023027:-1
so has part: feature:1022549-1023027:-1:region

position:1022549:-1
position: 1022549
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1023027:-1
position: 1023027
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1022549-1023027:-1:region

CusaM_p23
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: rpl2
locus tag: CusaM_p23
so part of: sequence
location: complement(1023028..1024835)
location: region:1023028-1024835:-1
so has part: feature:1023028-1024835:-1:exon
subclass of: SO_0000010

11123879
type: Gene
SIO_000068: ncbigene

position:1023028:-1
position: 1023028
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1024835:-1
position: 1024835
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1023028-1024835:-1:exon

CusaM_p23
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3659
gene: rpl2
locus tag: CusaM_p23
codon start: 1
product: ribosomal protein L2
translation: MITISTKRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHLGGGSKRLQRRIDLKRSTSSMGIVERIEYDPNRSSRIHPVRWIEGVRQRKCKTQEEFAPKPQILEPTTTTIRGLFSFSSPPGKVDQRKVASFSPGRMAAYVVVGLPTTRMPPWSRSPDTSTRKGAGSKKTCAKDLFFSAFSSQKTKGETASLSFGSSFAFPRVAVAGAKPAFFAPRMREKVRGKKTFSLCEVRKWRTHSILWAHRMKGKAALSWRSFRRQETLGLVGGAEHKESKAERDQGSLPAKPIGEGPKDGACKVNRVPVTYLIASHKCSAGKMVMNCDWSKPSTSDLLRPAQNGHTY
SIO_010081: CusaM_p23
subclass of: SO_0000673
so part of: CusaM_p23
location: complement(join(1023028..1023144,1023927..1024835))
location: region:1023028-1024835:-1
so has part: feature:1023927-1024835:-1:exon
so has part: feature:1023028-1023144:-1:exon

YP_004849339.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1023927-1024835:-1:exon

position:1023927:-1
position: 1023927
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1023028-1023144:-1:exon

position:1023144:-1
position: 1023144
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CusaM_p23
type: Exon
subclass of: SO_0000147
RO_0002162: 3659
gene: rpl2
locus tag: CusaM_p23
number: 2
SIO_010081: CusaM_p23
subclass of: SO_0000673
so part of: CusaM_p23
location: complement(1023028..1023144)
location: region:1023028-1023144:-1
so has part: feature:1023028-1023144:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1023028-1023144:-1:exon

CusaM_p23
type: Intron
subclass of: SO_0000188
RO_0002162: 3659
gene: rpl2
locus tag: CusaM_p23
SIO_010081: CusaM_p23
subclass of: SO_0000673
so part of: CusaM_p23
location: complement(1023145..1023926)
location: region:1023145-1023926:-1
so has part: feature:1023145-1023926:-1:exon

position:1023145:-1
position: 1023145
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1023926:-1
position: 1023926
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1023145-1023926:-1:exon

CusaM_p23
type: Exon
subclass of: SO_0000147
RO_0002162: 3659
gene: rpl2
locus tag: CusaM_p23
number: 1
SIO_010081: CusaM_p23
subclass of: SO_0000673
so part of: CusaM_p23
location: complement(1023927..1024835)
location: region:1023927-1024835:-1
so has part: feature:1023927-1024835:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1023927-1024835:-1:exon

CusaM_t12
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: trnR
locus tag: CusaM_t12
so part of: sequence
location: 1043015..1043083
location: region:1043015-1043083:1
so has part: feature:1043015-1043083:1:exon
subclass of: SO_0000663

11123880
type: Gene
SIO_000068: ncbigene

position:1043015:1
position: 1043015
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1043083:1
position: 1043083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1043015-1043083:1:exon

CusaM_t12
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3659
gene: trnR
locus tag: CusaM_t12
product: tRNA-Arg
SIO_010081: CusaM_t12
subclass of: SO_0000673
so part of: CusaM_t12
location: 1043015..1043083
location: region:1043015-1043083:1
so has part: feature:1043015-1043083:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1043015-1043083:1:exon

CusaM_r06
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: rrnL
locus tag: CusaM_r06
so part of: sequence
location: complement(1061286..1064871)
location: region:1061286-1064871:-1
so has part: feature:1061286-1064871:-1:exon
subclass of: SO_0000573

11123881
type: Gene
SIO_000068: ncbigene

position:1061286:-1
position: 1061286
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1064871:-1
position: 1064871
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1061286-1064871:-1:exon

CusaM_r06
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 3659
gene: rrnL
locus tag: CusaM_r06
product: large subunit ribosomal RNA
SIO_010081: CusaM_r06
subclass of: SO_0000673
so part of: CusaM_r06
location: complement(1061286..1064871)
location: region:1061286-1064871:-1
so has part: feature:1061286-1064871:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1061286-1064871:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 1079689..1091909
location: region:1079689-1091909:1
so has part: feature:1079689-1091909:1:region

position:1079689:1
position: 1079689
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1091909:1
position: 1091909
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1079689-1091909:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: intact chloroplast-like trnL embedded within larger tract of chloroplast-like DNA; possibly functional
so part of: sequence
location: 1083209..1083289
location: region:1083209-1083289:1
so has part: feature:1083209-1083289:1:region

position:1083209:1
position: 1083209
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1083289:1
position: 1083289
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1083209-1083289:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: intact chloroplast-like trnI embedded within larger tract of chloroplast-like DNA; possibly functional
so part of: sequence
location: 1090266..1090339
location: region:1090266-1090339:1
so has part: feature:1090266-1090339:1:region

position:1090266:1
position: 1090266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1090339:1
position: 1090339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1090266-1090339:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 1091910..1093034
location: region:1091910-1093034:1
so has part: feature:1091910-1093034:1:region

position:1091910:1
position: 1091910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1093034:1
position: 1093034
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1091910-1093034:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: degenerate chloroplast-like trnF embedded within larger tract of chloroplast-like DNA
pseudo: true
so part of: sequence
location: complement(1092920..1092992)
location: region:1092920-1092992:-1
so has part: feature:1092920-1092992:-1:region

position:1092920:-1
position: 1092920
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1092992:-1
position: 1092992
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1092920-1092992:-1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 1099449..1099513
location: region:1099449-1099513:1
so has part: feature:1099449-1099513:1:region

position:1099449:1
position: 1099449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1099513:1
position: 1099513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1099449-1099513:1:region

CusaM_t13
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: trnP
locus tag: CusaM_t13
so part of: sequence
location: complement(1107968..1108042)
location: region:1107968-1108042:-1
so has part: feature:1107968-1108042:-1:exon
subclass of: SO_0000663

11123882
type: Gene
SIO_000068: ncbigene

position:1107968:-1
position: 1107968
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1108042:-1
position: 1108042
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1107968-1108042:-1:exon

CusaM_t13
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3659
gene: trnP
locus tag: CusaM_t13
product: tRNA-Pro
SIO_010081: CusaM_t13
subclass of: SO_0000673
so part of: CusaM_t13
location: complement(1107968..1108042)
location: region:1107968-1108042:-1
so has part: feature:1107968-1108042:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1107968-1108042:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 1121216..1121395
location: region:1121216-1121395:1
so has part: feature:1121216-1121395:1:region

position:1121216:1
position: 1121216
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1121395:1
position: 1121395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1121216-1121395:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 1128921..1129042
location: region:1128921-1129042:1
so has part: feature:1128921-1129042:1:region

position:1128921:1
position: 1128921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1129042:1
position: 1129042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1128921-1129042:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 1140941..1141212
location: region:1140941-1141212:1
so has part: feature:1140941-1141212:1:region

position:1140941:1
position: 1140941
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1141212:1
position: 1141212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1140941-1141212:1:region

CusaM_p24
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: ccmC
locus tag: CusaM_p24
so part of: sequence
location: 1159053..1159796
location: region:1159053-1159796:1
so has part: feature:1159053-1159796:1:exon
subclass of: SO_0000010

11123883
type: Gene
SIO_000068: ncbigene

position:1159053:1
position: 1159053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1159796:1
position: 1159796
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1159053-1159796:1:exon

CusaM_p24
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3659
gene: ccmC
locus tag: CusaM_p24
codon start: 1
product: cytochrome c biogenesis C
translation: MSLSLLQPSFLMSKTRSYAQILIGSRLFLTAMAIHLSLRVAPLDLQQGGNSRILYVHVPAARMSILVYIATAINTFLFLLTKHPLFLRSSGTGTEMGAFFTLFTLVTGGFRGRPMWGTFWVWDARLTSVFISFLIYLGALRFQKLPVEPASISIRLGPIDIPIIKFSVNWWNTSHQPGSISGSGTSIHVPMPIPILSNFANFPLATRIFFVLETRLPIPFFPESPLTEEISAFYAKMTVRKSKLQMS
SIO_010081: CusaM_p24
subclass of: SO_0000673
so part of: CusaM_p24
location: 1159053..1159796
location: region:1159053-1159796:1
so has part: feature:1159053-1159796:1:exon

YP_004849340.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1159053-1159796:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 1189649..1189944
location: region:1189649-1189944:1
so has part: feature:1189649-1189944:1:region

position:1189649:1
position: 1189649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1189944:1
position: 1189944
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1189649-1189944:1:region

CusaM_p25
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: rpl5
locus tag: CusaM_p25
so part of: sequence
location: complement(1189999..1190589)
location: region:1189999-1190589:-1
so has part: feature:1189999-1190589:-1:exon
subclass of: SO_0000010

11123884
type: Gene
SIO_000068: ncbigene

position:1189999:-1
position: 1189999
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1190589:-1
position: 1190589
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1189999-1190589:-1:exon

CusaM_p25
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3659
gene: rpl5
locus tag: CusaM_p25
codon start: 1
product: ribosomal protein L5
translation: MGPSLQLQFHYEDISRQEPLLKLNYTNVMEVPGSSEIRVVPKEPYDFRSKNGKLAMEILRGQKLIQTRGSTGKSFRSNPFLESNKDKGYVSDLARESTLRGHSMFHFFFKIIIGIVLSFLNSPGEIRKNSIQFPMETEFFEFFPELADHFEIFSNTLGFHVTIVTSAKTQDETLPPWSGFLRKKWNLNLKKRKRKD
SIO_010081: CusaM_p25
subclass of: SO_0000673
so part of: CusaM_p25
location: complement(1189999..1190589)
location: region:1189999-1190589:-1
so has part: feature:1189999-1190589:-1:exon

YP_004849341.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1189999-1190589:-1:exon

CusaM_t14
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: trnF-GAA
locus tag: CusaM_t14
so part of: sequence
location: 1248599..1248673
location: region:1248599-1248673:1
so has part: feature:1248599-1248673:1:exon
subclass of: SO_0000663

11123885
type: Gene
SIO_000068: ncbigene

position:1248599:1
position: 1248599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1248673:1
position: 1248673
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1248599-1248673:1:exon

CusaM_t14
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3659
gene: trnF-GAA
locus tag: CusaM_t14
product: tRNA-Phe
note: anticodon:GAA; chloroplast-like
SIO_010081: CusaM_t14
subclass of: SO_0000673
so part of: CusaM_t14
location: 1248599..1248673
location: region:1248599-1248673:1
so has part: feature:1248599-1248673:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1248599-1248673:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 1263259..1268454
location: region:1263259-1268454:1
so has part: feature:1263259-1268454:1:region

position:1263259:1
position: 1263259
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1268454:1
position: 1268454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1263259-1268454:1:region

CusaM_p04
type: Exon
subclass of: SO_0000147
RO_0002162: 3659
gene: nad1
locus tag: CusaM_p04
number: 3
SIO_010081: CusaM_p04
subclass of: SO_0000673
so part of: CusaM_p04
location: complement(1283939..1284130)
location: region:1283939-1284130:-1
so has part: feature:1283939-1284130:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1283939-1284130:-1:exon

CusaM_p04
type: Intron
subclass of: SO_0000188
RO_0002162: 3659
gene: nad1
locus tag: CusaM_p04
note: cis-spliced intron
number: 2
SIO_010081: CusaM_p04
subclass of: SO_0000673
so part of: CusaM_p04
location: complement(1284131..1287868)
location: region:1284131-1287868:-1
so has part: feature:1284131-1287868:-1:exon

position:1284131:-1
position: 1284131
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1287868:-1
position: 1287868
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1284131-1287868:-1:exon

CusaM_p04
type: Exon
subclass of: SO_0000147
RO_0002162: 3659
gene: nad1
locus tag: CusaM_p04
number: 2
SIO_010081: CusaM_p04
subclass of: SO_0000673
so part of: CusaM_p04
location: complement(1287869..1287949)
location: region:1287869-1287949:-1
so has part: feature:1287869-1287949:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1287869-1287949:-1:exon

CusaM_p26
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: rps13
locus tag: CusaM_p26
so part of: sequence
location: complement(1288876..1289226)
location: region:1288876-1289226:-1
so has part: feature:1288876-1289226:-1:exon
subclass of: SO_0000010

11123886
type: Gene
SIO_000068: ncbigene

position:1288876:-1
position: 1288876
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1289226:-1
position: 1289226
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1288876-1289226:-1:exon

CusaM_p26
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3659
gene: rps13
locus tag: CusaM_p26
codon start: 1
product: ribosomal protein S13
translation: MSYISGARSVADKQVRIASTQIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIEKIEQVIGKDHIVNWELKRGERADIERLISLSCYRGIRHQDGLPLRGQRTHTNARTCRKRIRK
SIO_010081: CusaM_p26
subclass of: SO_0000673
so part of: CusaM_p26
location: complement(1288876..1289226)
location: region:1288876-1289226:-1
so has part: feature:1288876-1289226:-1:exon

YP_004849342.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1288876-1289226:-1:exon

CusaM_t15
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: trnC-GCA
locus tag: CusaM_t15
so part of: sequence
location: 1299229..1299301
location: region:1299229-1299301:1
so has part: feature:1299229-1299301:1:exon
subclass of: SO_0000663

11123887
type: Gene
SIO_000068: ncbigene

position:1299229:1
position: 1299229
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1299301:1
position: 1299301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1299229-1299301:1:exon

CusaM_t15
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3659
gene: trnC-GCA
locus tag: CusaM_t15
product: tRNA-Cys
note: anticodon:GCA
SIO_010081: CusaM_t15
subclass of: SO_0000673
so part of: CusaM_t15
location: 1299229..1299301
location: region:1299229-1299301:1
so has part: feature:1299229-1299301:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1299229-1299301:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 1306451..1306565
location: region:1306451-1306565:1
so has part: feature:1306451-1306565:1:region

position:1306451:1
position: 1306451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1306565:1
position: 1306565
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1306451-1306565:1:region

CusaM_p27
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: atp9
locus tag: CusaM_p27
so part of: sequence
location: 1310084..1310308
location: region:1310084-1310308:1
so has part: feature:1310084-1310308:1:exon
subclass of: SO_0000010

11123889
type: Gene
SIO_000068: ncbigene

position:1310084:1
position: 1310084
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1310308:1
position: 1310308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1310084-1310308:1:exon

CusaM_p27
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3659
gene: atp9
locus tag: CusaM_p27
exception: RNA editing
codon start: 1
product: ATPase subunit 9
translation: MLEGAKSMGAGAATIASAGAAVGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTEAIALFALMMAFLISFVF
SIO_010081: CusaM_p27
subclass of: SO_0000673
so part of: CusaM_p27
location: 1310084..1310308
location: region:1310084-1310308:1
so has part: feature:1310084-1310308:1:exon

YP_004849343.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1310084-1310308:1:exon

CusaM_p28
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: atp6
locus tag: CusaM_p28
so part of: sequence
location: 1312049..1312816
location: region:1312049-1312816:1
so has part: feature:1312049-1312816:1:exon
subclass of: SO_0000010

11123915
type: Gene
SIO_000068: ncbigene

position:1312049:1
position: 1312049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1312816:1
position: 1312816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1312049-1312816:1:exon

CusaM_p28
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3659
gene: atp6
locus tag: CusaM_p28
exception: RNA editing
codon start: 1
product: ATPase subunit 6
translation: MPNSPLEQFAILPLIPMHIGNYYFSFTNPSLFMLLTLSLVLLLLHFVTKNGGGNSVPNAWQSLVELIYDFVPNLVNEQIGGLSGNVKQKFFPRILVTLTFSLFRNPQGMIPYSFTVTSHFLITLGLSFSLFIGITIVGFQRNGLHFFSFLLPAGVPLPLAPFLVLLELIPHCFRALSSGIRLFANMMAGHSSVKILSGSAWTMLCMNNILYFIGDPGPLFIVLALTGLELGVAISQAHVSTISICIYLNDATNLH
SIO_010081: CusaM_p28
subclass of: SO_0000673
so part of: CusaM_p28
location: 1312049..1312816
location: region:1312049-1312816:1
so has part: feature:1312049-1312816:1:exon

YP_004849344.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1312049-1312816:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 1339766..1340005
location: region:1339766-1340005:1
so has part: feature:1339766-1340005:1:region

position:1339766:1
position: 1339766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1340005:1
position: 1340005
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1339766-1340005:1:region

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: intact chloroplast-like trnF embedded within larger tract of chloroplast-like DNA; possibly functional
so part of: sequence
location: complement(1339897..1339959)
location: region:1339897-1339959:-1
so has part: feature:1339897-1339959:-1:region

position:1339897:-1
position: 1339897
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1339959:-1
position: 1339959
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1339897-1339959:-1:region

CusaM_p04
type: Exon
subclass of: SO_0000147
RO_0002162: 3659
gene: nad1
locus tag: CusaM_p04
number: 4
SIO_010081: CusaM_p04
subclass of: SO_0000673
so part of: CusaM_p04
location: 1371658..1371716
location: region:1371658-1371716:1
so has part: feature:1371658-1371716:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1371658-1371716:1:exon

CusaM_p04
type: Intron
subclass of: SO_0000188
RO_0002162: 3659
gene: nad1
locus tag: CusaM_p04
note: cis-spliced intron
number: 4
SIO_010081: CusaM_p04
subclass of: SO_0000673
so part of: CusaM_p04
location: 1371717..1375910
location: region:1371717-1375910:1
so has part: feature:1371717-1375910:1:exon

position:1371717:1
position: 1371717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1375910:1
position: 1375910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1371717-1375910:1:exon

CusaM_p29
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: matR
locus tag: CusaM_p29
note: start codon not determined
so part of: sequence
location: <1372332..1374407
location: region:1372332-1374407:1
so has part: feature:1372332-1374407:1:exon
subclass of: SO_0000010

11123891
type: Gene
SIO_000068: ncbigene

position:1372332:1
position: 1372332
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:1374407:1
position: 1374407
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1372332-1374407:1:exon

CusaM_p29
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3659
gene: matR
locus tag: CusaM_p29
note: start codon not determined
codon start: 1
product: maturase
translation: RKKSGSKFRPLTVVRPIEKIIQEAIRMVLSSIYDPEFADTSHFHSGRGRHSALRRIKEEWGTSRWFLEFDIRKSFHTIDRHRLISIFKEEIDDPKFFYSMNQVFSVGRLVGGEKGPYYSVPHSVLLSALAGKIYLHKLDQEIGRIRQKYSIPLVQRIRSVLLRTGRIDDQENSGEEASFNAPQDYRALIMGRVKSFQRKAAFHSLLSSWHTPHTSTTRLRGDQKRPFLFPPSSYLAAFLNKPSSLLCAAFLIEGTGLTPQAEFYGREGCNKKLAMRDLFQYCKRKGLLIELGGEAILVIRSERGLARKQAPLKTHYLIRISYARYADDLLLGIVGAVELLIEIQKRIAHFLQQFNSINRKQEHKGFSRPKKSEKVNGSPPSTFGRVGFAGRRTIAARSTVEFPGTVIREVPPRTTPIQFLRELEKRLRVKHRIHITACHLRSAIHSNLRNLGNSIPIKELTKGMSQRGSLLDGVQLAETMFRAGVRSPQVSVLWGTVKHIRQGERGIEFLHSSGRSKAPSDVQQAVSRSGMSARKLSLYTPAGRKAKGEGGGHWAGSISSEFPIHLEAPIKKILRRLRDRGIISRRRPWPIHVACLTNVSDGDIVNWSAGIAISLLSYYRCCDNLYQVRRIVDHQIRWSAIFTLAHKHKSSARNIIPKYSKDPNIVNQEGGQTEAEFPNSIELGKLGPRHP
SIO_010081: CusaM_p29
subclass of: SO_0000673
so part of: CusaM_p29
location: <1372332..1374407
location: region:1372332-1374407:1
so has part: feature:1372332-1374407:1:exon

YP_004849345.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1372332-1374407:1:exon

CusaM_p04
type: Exon
subclass of: SO_0000147
RO_0002162: 3659
gene: nad1
locus tag: CusaM_p04
number: 5
SIO_010081: CusaM_p04
subclass of: SO_0000673
so part of: CusaM_p04
location: 1375911..1376169
location: region:1375911-1376169:1
so has part: feature:1375911-1376169:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1375911-1376169:1:exon

CusaM_t16
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: trnH-GUG
locus tag: CusaM_t16
so part of: sequence
location: 1380619..1380692
location: region:1380619-1380692:1
so has part: feature:1380619-1380692:1:exon
subclass of: SO_0000663

11123917
type: Gene
SIO_000068: ncbigene

position:1380619:1
position: 1380619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1380692:1
position: 1380692
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1380619-1380692:1:exon

CusaM_t16
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3659
gene: trnH-GUG
locus tag: CusaM_t16
product: tRNA-His
note: anticodon:GUG; chloroplast-like
SIO_010081: CusaM_t16
subclass of: SO_0000673
so part of: CusaM_t16
location: 1380619..1380692
location: region:1380619-1380692:1
so has part: feature:1380619-1380692:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1380619-1380692:1:exon

CusaM_p30
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: atp1
locus tag: CusaM_p30
so part of: sequence
location: 1402356..1403879
location: region:1402356-1403879:1
so has part: feature:1402356-1403879:1:exon
subclass of: SO_0000010

11123893
type: Gene
SIO_000068: ncbigene

position:1402356:1
position: 1402356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1403879:1
position: 1403879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1402356-1403879:1:exon

CusaM_p30
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3659
gene: atp1
locus tag: CusaM_p30
note: putative start codon
codon start: 1
transl except: (pos:1402356..1402358,aa:Met)
product: ATPase subunit 1
translation: MEFSPGAAELTTFLEGRITNFNTSFQVDEMGRVFSVGDGISRVYGLKEIQAGEMVEFSSGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDALGVPIDGRGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKQMNSRAESETLYCVYVAIGQKRSTVAQLVQILSEGNALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAFPGDVFYLHSRLLERAAKRSDQTGAGSLTALPVIETQAGDVSAYIPTNVIPITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQVCGSSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVSKQAQYAPLNIEKEILVIYAAVNGFCDRMPLEKISQYERVIPSRIKPELQQSLLGGLTQEIKIEPDAFLNESAFPFLSV
SIO_010081: CusaM_p30
subclass of: SO_0000673
so part of: CusaM_p30
location: 1402356..1403879
location: region:1402356-1403879:1
so has part: feature:1402356-1403879:1:exon

YP_004849346.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1402356-1403879:1:exon

CusaM_p31
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: rps1
locus tag: CusaM_p31
so part of: sequence
location: 1405872..1406387
location: region:1405872-1406387:1
so has part: feature:1405872-1406387:1:exon
subclass of: SO_0000010

11123918
type: Gene
SIO_000068: ncbigene

position:1405872:1
position: 1405872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1406387:1
position: 1406387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1405872-1406387:1:exon

CusaM_p31
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3659
gene: rps1
locus tag: CusaM_p31
codon start: 1
product: ribosomal protein S1
translation: MFLVDAGPGTPIICMQDEPTGVPINRAARFETHSAVGSLDLVAGESLLKEQILERFFIDLVAGESLLKERAAARLNDYLVGSTDVVAGEPLFLLPRRFRQNRAWMELNKIWQTNQKVKGFIIEKVKGGYSVAIAGFITFLPFRRPLIRQRISNDRFTIKSINPKRTNIILW
SIO_010081: CusaM_p31
subclass of: SO_0000673
so part of: CusaM_p31
location: 1405872..1406387
location: region:1405872-1406387:1
so has part: feature:1405872-1406387:1:exon

YP_004849347.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1405872-1406387:1:exon

CusaM_p32
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: nad9
locus tag: CusaM_p32
so part of: sequence
location: 1406569..1407141
location: region:1406569-1407141:1
so has part: feature:1406569-1407141:1:exon
subclass of: SO_0000010

11123896
type: Gene
SIO_000068: ncbigene

position:1406569:1
position: 1406569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1407141:1
position: 1407141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1406569-1407141:1:exon

CusaM_p32
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3659
gene: nad9
locus tag: CusaM_p32
codon start: 1
product: NADH dehydrogenase subunit 9
translation: MDNQSIYKYSWETVPKKWVKKRERSEHGNRSDTNTDYLFQLLCFLKLHTYTRVQVSIDICGVDYPSRKLRFEVVYNLLSTRYNSRIRVQTSADEVTRISPVVSLFPSAGRWEREVWDMFGVSSINHPDLRRISTDYGFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRYFDFASPWEQRSDG
SIO_010081: CusaM_p32
subclass of: SO_0000673
so part of: CusaM_p32
location: 1406569..1407141
location: region:1406569-1407141:1
so has part: feature:1406569-1407141:1:exon

YP_004849348.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1406569-1407141:1:exon

CusaM_p33
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: atp8
locus tag: CusaM_p33
so part of: sequence
location: 1420574..1421053
location: region:1420574-1421053:1
so has part: feature:1420574-1421053:1:exon
subclass of: SO_0000010

11123897
type: Gene
SIO_000068: ncbigene

position:1420574:1
position: 1420574
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1421053:1
position: 1421053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1420574-1421053:1:exon

CusaM_p33
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3659
gene: atp8
locus tag: CusaM_p33
codon start: 1
product: ATPase subunit 8
translation: MPQLDKLTYFTQFFWSCLFFLTFYIPICNDGDGVLGISRILKLRNQLLSHRGKNIRSKDPNSLEDLLRKGFSTGVSYMYSSFKEVSQWCKAVDLLGKRRKITFLSCFGEISGSRGLERNIFYLISKSSYSTSSNPGWGIACRNEIMLIHVLHGQGSIVF
SIO_010081: CusaM_p33
subclass of: SO_0000673
so part of: CusaM_p33
location: 1420574..1421053
location: region:1420574-1421053:1
so has part: feature:1420574-1421053:1:exon

YP_004849349.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1420574-1421053:1:exon

CusaM_p34
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: cox3
locus tag: CusaM_p34
so part of: sequence
location: 1426269..1427066
location: region:1426269-1427066:1
so has part: feature:1426269-1427066:1:exon
subclass of: SO_0000010

11123898
type: Gene
SIO_000068: ncbigene

position:1426269:1
position: 1426269
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1427066:1
position: 1427066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1426269-1427066:1:exon

CusaM_p34
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3659
gene: cox3
locus tag: CusaM_p34
codon start: 1
product: cytochrome c oxidase subunit 3
translation: MIESQRHSYHLVDPSPWPISGSLGALATTVGGVMYMHSFQGGARLLSLGLIFLLYTMFVWWRDVLRESTLEGHHTKVVQLGLRYGFILFIVSEVMFLFAFFRASSHSSLAPTVEIGGIWPPKGIGVLDPREIPFLNTPILLSSGAAVTWAHHAILAGKEKRAVYALVATVSLALVFTGFQGMEYYQAPFTISDSIYGSTFFLATGFHGFHVIIGTLFLIVCGIRQYLGHLTKEHHVGFEAAAWYWHFVDVVRLFLFVSIYWWGGI
SIO_010081: CusaM_p34
subclass of: SO_0000673
so part of: CusaM_p34
location: 1426269..1427066
location: region:1426269-1427066:1
so has part: feature:1426269-1427066:1:exon

YP_004849350.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1426269-1427066:1:exon

CusaM_p35
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: sdh4
locus tag: CusaM_p35
so part of: sequence
location: 1426994..1427428
location: region:1426994-1427428:1
so has part: feature:1426994-1427428:1:exon
subclass of: SO_0000010

11123900
type: Gene
SIO_000068: ncbigene

position:1426994:1
position: 1426994
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1427428:1
position: 1427428
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1426994-1427428:1:exon

CusaM_p35
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3659
gene: sdh4
locus tag: CusaM_p35
codon start: 1
product: succinate dehydrogenase subunit 4
translation: MVLAFCRRGSVIPICLYLLVGRYMKERKSGLRNSSSKTKRTGLFQRITAAFPLPLIIIYHKVSSTFLPNLSLFWHINSGIEEIMADHVHQEMTRNWILVYLRFFLFISIKDLFLSLISFPNQSKNLMDSSLPAMKDIGLAEGRK
SIO_010081: CusaM_p35
subclass of: SO_0000673
so part of: CusaM_p35
location: 1426994..1427428
location: region:1426994-1427428:1
so has part: feature:1426994-1427428:1:exon

YP_004849351.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1426994-1427428:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 1427619..1427691
location: region:1427619-1427691:1
so has part: feature:1427619-1427691:1:region

position:1427619:1
position: 1427619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1427691:1
position: 1427691
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1427619-1427691:1:region

CusaM_p36
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: cox2
locus tag: CusaM_p36
so part of: sequence
location: 1428065..1428847
location: region:1428065-1428847:1
so has part: feature:1428065-1428847:1:exon
subclass of: SO_0000010

11123901
type: Gene
SIO_000068: ncbigene

position:1428065:1
position: 1428065
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1428847:1
position: 1428847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1428065-1428847:1:exon

CusaM_p36
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3659
gene: cox2
locus tag: CusaM_p36
codon start: 1
product: cytochrome c oxidase subunit 2
translation: MIVLKWLFLTIAPCDAAEPWQLGSQDAATPMMQGIIDLHHDIFFFLILIFVFVSRILVRALWHFHYSQKKIPQRIVHGTTIEILWTIFPSIIPMFIAIPSFALLYSMDEVVVDPAMTIKAIGHQWYRTYEYSDYNSSDEQSLTFDSYTIPEDDLELGQSRLLEVDNRVVLPAKTHLRIIVTPADVPHSWAVPSSGVKCDAVPGRLNQISILVQREGVYYGQCSEICGTNHAFTPIVVEAVPRKDYGSRVSNQLIPQSGEA
SIO_010081: CusaM_p36
subclass of: SO_0000673
so part of: CusaM_p36
location: 1428065..1428847
location: region:1428065-1428847:1
so has part: feature:1428065-1428847:1:exon

YP_004849352.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1428065-1428847:1:exon

CusaM_t17
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: trnE-UUC
locus tag: CusaM_t17
so part of: sequence
location: complement(1444809..1444880)
location: region:1444809-1444880:-1
so has part: feature:1444809-1444880:-1:exon
subclass of: SO_0000663

11123903
type: Gene
SIO_000068: ncbigene

position:1444809:-1
position: 1444809
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1444880:-1
position: 1444880
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1444809-1444880:-1:exon

CusaM_t17
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3659
gene: trnE-UUC
locus tag: CusaM_t17
product: tRNA-Glu
note: anticodon:UUC
SIO_010081: CusaM_t17
subclass of: SO_0000673
so part of: CusaM_t17
location: complement(1444809..1444880)
location: region:1444809-1444880:-1
so has part: feature:1444809-1444880:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1444809-1444880:-1:exon

CusaM_t18
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: trnI-CAU
locus tag: CusaM_t18
so part of: sequence
location: complement(1445617..1445697)
location: region:1445617-1445697:-1
so has part: feature:1445617-1445697:-1:exon
subclass of: SO_0000663

11123904
type: Gene
SIO_000068: ncbigene

position:1445617:-1
position: 1445617
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1445697:-1
position: 1445697
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1445617-1445697:-1:exon

CusaM_t18
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3659
gene: trnI-CAU
locus tag: CusaM_t18
product: tRNA-Ile
note: anticodon:CAU; C assumed to be post-transcriptionally modified to lysidien, which pairs with A, not G, in potato (see PubMed 1698276)
SIO_010081: CusaM_t18
subclass of: SO_0000673
so part of: CusaM_t18
location: complement(1445617..1445697)
location: region:1445617-1445697:-1
so has part: feature:1445617-1445697:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1445617-1445697:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 1465506..1466300
location: region:1465506-1466300:1
so has part: feature:1465506-1466300:1:region

position:1465506:1
position: 1465506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1466300:1
position: 1466300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1465506-1466300:1:region

CusaM_p37
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: nad4L
locus tag: CusaM_p37
so part of: sequence
location: 1471307..1471609
location: region:1471307-1471609:1
so has part: feature:1471307-1471609:1:exon
subclass of: SO_0000010

11123905
type: Gene
SIO_000068: ncbigene

position:1471307:1
position: 1471307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1471609:1
position: 1471609
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1471307-1471609:1:exon

CusaM_p37
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3659
gene: nad4L
locus tag: CusaM_p37
exception: RNA editing
codon start: 1
product: NADH dehydrogenase subunit 4L
translation: MDPIKYFTFSMIISILGIRGILLNRRNIPIMSMPIESMLLAVNSNFLVFSVSSDDMMGQSFASLVPTVAAAESAIGLAIFVITFRVRGTIAVEFLNSIQG
SIO_010081: CusaM_p37
subclass of: SO_0000673
so part of: CusaM_p37
location: 1471307..1471609
location: region:1471307-1471609:1
so has part: feature:1471307-1471609:1:exon

YP_004849353.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1471307-1471609:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 1494984..1495038
location: region:1494984-1495038:1
so has part: feature:1494984-1495038:1:region

position:1494984:1
position: 1494984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1495038:1
position: 1495038
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1494984-1495038:1:region

CusaM_t19
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: trnE-UUC
locus tag: CusaM_t19
so part of: sequence
location: complement(1501910..1501981)
location: region:1501910-1501981:-1
so has part: feature:1501910-1501981:-1:exon
subclass of: SO_0000663

11123906
type: Gene
SIO_000068: ncbigene

position:1501910:-1
position: 1501910
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1501981:-1
position: 1501981
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1501910-1501981:-1:exon

CusaM_t19
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3659
gene: trnE-UUC
locus tag: CusaM_t19
product: tRNA-Glu
note: anticodon:UUC
SIO_010081: CusaM_t19
subclass of: SO_0000673
so part of: CusaM_t19
location: complement(1501910..1501981)
location: region:1501910-1501981:-1
so has part: feature:1501910-1501981:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1501910-1501981:-1:exon

CusaM_t20
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: trnS-GCU
locus tag: CusaM_t20
so part of: sequence
location: 1504193..1504280
location: region:1504193-1504280:1
so has part: feature:1504193-1504280:1:exon
subclass of: SO_0000663

11123908
type: Gene
SIO_000068: ncbigene

position:1504193:1
position: 1504193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1504280:1
position: 1504280
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1504193-1504280:1:exon

CusaM_t20
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 3659
gene: trnS-GCU
locus tag: CusaM_t20
product: tRNA-Ser
note: anticodon:GCU
SIO_010081: CusaM_t20
subclass of: SO_0000673
so part of: CusaM_t20
location: 1504193..1504280
location: region:1504193-1504280:1
so has part: feature:1504193-1504280:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1504193-1504280:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 1510503..1510690
location: region:1510503-1510690:1
so has part: feature:1510503-1510690:1:region

position:1510503:1
position: 1510503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1510690:1
position: 1510690
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1510503-1510690:1:region

CusaM_p03
type: Exon
subclass of: SO_0000147
RO_0002162: 3659
gene: nad5
locus tag: CusaM_p03
number: 1
SIO_010081: CusaM_p03
subclass of: SO_0000673
so part of: CusaM_p03
location: 1510984..1511213
location: region:1510984-1511213:1
so has part: feature:1510984-1511213:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1510984-1511213:1:exon

CusaM_p03
type: Intron
subclass of: SO_0000188
RO_0002162: 3659
gene: nad5
locus tag: CusaM_p03
note: cis-spliced intron
number: 1
SIO_010081: CusaM_p03
subclass of: SO_0000673
so part of: CusaM_p03
location: 1511214..1512936
location: region:1511214-1512936:1
so has part: feature:1511214-1512936:1:exon

position:1511214:1
position: 1511214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1512936:1
position: 1512936
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1511214-1512936:1:exon

CusaM_p03
type: Exon
subclass of: SO_0000147
RO_0002162: 3659
gene: nad5
locus tag: CusaM_p03
number: 2
SIO_010081: CusaM_p03
subclass of: SO_0000673
so part of: CusaM_p03
location: 1512937..1514152
location: region:1512937-1514152:1
so has part: feature:1512937-1514152:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1512937-1514152:1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: chloroplast-like DNA
so part of: sequence
location: 1515450..1515532
location: region:1515450-1515532:1
so has part: feature:1515450-1515532:1:region

position:1515450:1
position: 1515450
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1515532:1
position: 1515532
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1515450-1515532:1:region

CusaM_p38
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: nad4
locus tag: CusaM_p38
so part of: sequence
location: complement(1528978..1542904)
location: region:1528978-1542904:-1
so has part: feature:1528978-1542904:-1:exon
subclass of: SO_0000010

11123909
type: Gene
SIO_000068: ncbigene

position:1528978:-1
position: 1528978
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1542904:-1
position: 1542904
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1528978-1542904:-1:exon

CusaM_p38
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3659
gene: nad4
locus tag: CusaM_p38
codon start: 1
product: NADH dehydrogenase subunit 4
translation: MLEHFCSCYFSLSGPILCPVLGSITPLFIPNSRIRPIRLIGLCASLITFLYPPVPRIQFDPSTAKSQFVESLRWLPYSNINFSLGIDGISLFFVILTTFLIPICILVGWSGMRSYGKEYITASLIRSFLMIAVFRMLDLLLFYVLPESVPIPMFIIIGVWGSRQRKIKAAYQFFLYTLLGSVFMLLAILLILLQTGTTDLQISLTTEFSERRQIFLWIASFASFAVKVPMVPVHIWLPEAHVEAPTAGSVILAGILLKLGTHGFLRFSIPIFPEATLCATPFIYTLSAIAIIYTSLTTSRQIDLKKIIAYSSVAHMNLVTIGMFSPNIQGIGGSILPMLSHGLVPSALFLCVGVLYDRHKTRLVRYYGGSVSTMPNLSTISFSFTLANMSLPGTSSFIGEFPISVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVSGNCKPDFLHKFSDPNGREVSIFIPFLVGVVRMGVHPKVFPDHMHTSVSNLVQHGKLN
SIO_010081: CusaM_p38
subclass of: SO_0000673
so part of: CusaM_p38
location: complement(join(1528978..1529066,1533837..1534259,1540055..1540569,1542444..1542904))
location: region:1528978-1542904:-1
so has part: feature:1542444-1542904:-1:exon
so has part: feature:1540055-1540569:-1:exon
so has part: feature:1533837-1534259:-1:exon
so has part: feature:1528978-1529066:-1:exon

YP_004849354.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1542444-1542904:-1:exon

position:1542444:-1
position: 1542444
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1540055-1540569:-1:exon

position:1540055:-1
position: 1540055
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1540569:-1
position: 1540569
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1533837-1534259:-1:exon

position:1533837:-1
position: 1533837
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1534259:-1
position: 1534259
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1528978-1529066:-1:exon

position:1529066:-1
position: 1529066
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CusaM_p38
type: Exon
subclass of: SO_0000147
RO_0002162: 3659
gene: nad4
locus tag: CusaM_p38
number: 4
SIO_010081: CusaM_p38
subclass of: SO_0000673
so part of: CusaM_p38
location: complement(1528978..1529066)
location: region:1528978-1529066:-1
so has part: feature:1528978-1529066:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1528978-1529066:-1:exon

CusaM_p38
type: Intron
subclass of: SO_0000188
RO_0002162: 3659
gene: nad4
locus tag: CusaM_p38
number: 3
SIO_010081: CusaM_p38
subclass of: SO_0000673
so part of: CusaM_p38
location: complement(1529067..1533836)
location: region:1529067-1533836:-1
so has part: feature:1529067-1533836:-1:exon

position:1529067:-1
position: 1529067
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1533836:-1
position: 1533836
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1529067-1533836:-1:exon

CusaM_p38
type: Exon
subclass of: SO_0000147
RO_0002162: 3659
gene: nad4
locus tag: CusaM_p38
number: 3
SIO_010081: CusaM_p38
subclass of: SO_0000673
so part of: CusaM_p38
location: complement(1533837..1534259)
location: region:1533837-1534259:-1
so has part: feature:1533837-1534259:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1533837-1534259:-1:exon

CusaM_p38
type: Intron
subclass of: SO_0000188
RO_0002162: 3659
gene: nad4
locus tag: CusaM_p38
number: 2
SIO_010081: CusaM_p38
subclass of: SO_0000673
so part of: CusaM_p38
location: complement(1534260..1540054)
location: region:1534260-1540054:-1
so has part: feature:1534260-1540054:-1:exon

position:1534260:-1
position: 1534260
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1540054:-1
position: 1540054
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1534260-1540054:-1:exon

CusaM_p38
type: Exon
subclass of: SO_0000147
RO_0002162: 3659
gene: nad4
locus tag: CusaM_p38
number: 2
SIO_010081: CusaM_p38
subclass of: SO_0000673
so part of: CusaM_p38
location: complement(1540055..1540569)
location: region:1540055-1540569:-1
so has part: feature:1540055-1540569:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1540055-1540569:-1:exon

CusaM_p38
type: Intron
subclass of: SO_0000188
RO_0002162: 3659
gene: nad4
locus tag: CusaM_p38
number: 1
SIO_010081: CusaM_p38
subclass of: SO_0000673
so part of: CusaM_p38
location: complement(1540570..1542443)
location: region:1540570-1542443:-1
so has part: feature:1540570-1542443:-1:exon

position:1540570:-1
position: 1540570
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1542443:-1
position: 1542443
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1540570-1542443:-1:exon

CusaM_p38
type: Exon
subclass of: SO_0000147
RO_0002162: 3659
gene: nad4
locus tag: CusaM_p38
number: 1
SIO_010081: CusaM_p38
subclass of: SO_0000673
so part of: CusaM_p38
location: complement(1542444..1542904)
location: region:1542444-1542904:-1
so has part: feature:1542444-1542904:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1542444-1542904:-1:exon

misc_feature
type: Miscellaneous Feature
subclass of: SO_0000001
RO_0002162: 3659
note: rpl5 gene fragment
so part of: sequence
location: 1553454..1553637
location: region:1553454-1553637:1
so has part: feature:1553454-1553637:1:region

position:1553454:1
position: 1553454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1553637:1
position: 1553637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1553454-1553637:1:region

CusaM_p39
type: Gene
subclass of: SO_0000704
RO_0002162: 3659
gene: rps10
locus tag: CusaM_p39
so part of: sequence
location: 1554211..1555628
location: region:1554211-1555628:1
so has part: feature:1554211-1555628:1:exon
subclass of: SO_0000010

11123910
type: Gene
SIO_000068: ncbigene

position:1554211:1
position: 1554211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1555628:1
position: 1555628
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1554211-1555628:1:exon

CusaM_p39
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 3659
gene: rps10
locus tag: CusaM_p39
exception: RNA editing
codon start: 1
product: ribosomal protein S10
translation: MTTKIRIVIRSFDHPFFENHFLGLPPYTRKIGLPESRVHYTVLRSPHIDKKSREQFSMERKIKPMVIKTERHELRKKFFRLKRQRIFGAQYSILFSCKTRSDKGKLQRLL
SIO_010081: CusaM_p39
subclass of: SO_0000673
so part of: CusaM_p39
location: join(1554211..1554460,1555546..1555628)
location: region:1554211-1555628:1
so has part: feature:1554211-1554460:1:exon
so has part: feature:1555546-1555628:1:exon

YP_004849355.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1554211-1554460:1:exon

position:1554460:1
position: 1554460
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1555546-1555628:1:exon

position:1555546:1
position: 1555546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CusaM_p39
type: Exon
subclass of: SO_0000147
RO_0002162: 3659
gene: rps10
locus tag: CusaM_p39
number: 1
SIO_010081: CusaM_p39
subclass of: SO_0000673
so part of: CusaM_p39
location: 1554211..1554460
location: region:1554211-1554460:1
so has part: feature:1554211-1554460:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1554211-1554460:1:exon

CusaM_p39
type: Intron
subclass of: SO_0000188
RO_0002162: 3659
gene: rps10
locus tag: CusaM_p39
SIO_010081: CusaM_p39
subclass of: SO_0000673
so part of: CusaM_p39
location: 1554461..1555545
location: region:1554461-1555545:1
so has part: feature:1554461-1555545:1:exon

position:1554461:1
position: 1554461
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1555545:1
position: 1555545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1554461-1555545:1:exon

CusaM_p39
type: Exon
subclass of: SO_0000147
RO_0002162: 3659
gene: rps10
locus tag: CusaM_p39
number: 2
SIO_010081: CusaM_p39
subclass of: SO_0000673
so part of: CusaM_p39
location: 1555546..1555628
location: region:1555546-1555628:1
so has part: feature:1555546-1555628:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1555546-1555628:1:exon