Polaromonas naphthalenivorans CJ2 plasmid pPNAP07, complete sequence.
type: Entry
definition: Polaromonas naphthalenivorans CJ2 plasmid pPNAP07, complete sequence.
sequence version: NC_008763.1
sequence date: 2022-12-28
sequence: sequence
division: CON
label: NC_008763.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02598302
keyword: RefSeq
source: Polaromonas naphthalenivorans CJ2
organism: Polaromonas naphthalenivorans CJ2
taxonomy: Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP000536.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4000361\nSource DNA and bacteria available from Eugene L. Madsen\n(elm3@cornell.edu)\nContacts: Eugene L. Madsen (elm3@cornell.edu)\n Paul Richardson (microbes@cuba.jgi-psf.org)\nQuality assurance done by JGI-Stanford\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-LANL\nFinished microbial genomes have been curated to close all gaps with\ngreater than 98% coverage of at least two independent clones. Each\nbase pair has a minimum q (quality) value of 30 and the total error\nrate is less than one per 50000.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/28/2022 02:04:21\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,174\nCDSs (total) :: 5,114\nGenes (coding) :: 4,993\nCDSs (with protein) :: 4,993\nGenes (RNA) :: 60\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 3\nPseudo Genes (total) :: 121\nCDSs (without protein) :: 121\nPseudo Genes (ambiguous residues) :: 0 of 121\nPseudo Genes (frameshifted) :: 42 of 121\nPseudo Genes (incomplete) :: 93 of 121\nPse…

sequence
subclass of: SO_0000155
sequence length: 9898
topology: circular
so has quality: SO_0000988
location: 1..9898
location: region:1-9898:1
RO_0002162: 365044

NC_008763
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02598302
type: BioSample
SIO_000068: biosample

1
title: Complete sequence of plasmid pPNAP07 of Polaromonas naphthalenivorans CJ2
author: Copeland, A.
author: Lucas, S.
author: Lapidus, A.
author: Barry, K.
author: Detter, J.C.
author: Glavina del Rio, T.
author: Hammon, N.
author: Israni, S.
author: Dalin, E.
author: Tice, H.
author: Pitluck, S.
author: Sims, D.R.
author: Brettin, T.
author: Bruce, D.
author: Han, C.
author: Tapia, R.
author: Brainard, J.
author: Schmutz, J.
author: Larimer, F.
author: Land, M.
author: Hauser, L.
author: Kyrpides, N.
author: Kim, E.
author: Madsen, E.L.
author: Richardson, P.
journal: Unpublished

2
title: Direct Submission
author: Copeland, A.
author: Lucas, S.
author: Lapidus, A.
author: Barry, K.
author: Detter, J.C.
author: Glavina del Rio, T.
author: Hammon, N.
author: Israni, S.
author: Dalin, E.
author: Tice, H.
author: Pitluck, S.
author: Sims, D.R.
author: Brettin, T.
author: Bruce, D.
author: Han, C.
author: Tapia, R.
author: Brainard, J.
author: Schmutz, J.
author: Larimer, F.
author: Land, M.
author: Hauser, L.
author: Kyrpides, N.
author: Kim, E.
author: Madsen, E.L.
author: Richardson, P.
journal: Submitted (21-DEC-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9898:1
position: 9898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-9898:1:source
so part of: sequence
organism: Polaromonas naphthalenivorans CJ2
mol type: genomic DNA
strain: CJ2
type material: type strain of Polaromonas naphthalenivorans
plasmid: pPNAP07

365044
type: Taxonomy
SIO_000068: taxonomy

PNAP_RS24710
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24710
old locus tag: Pnap_4993
so part of: sequence
location: join(9760..9898,1..542)
location: region:1-9898:1
so has part: feature:9760-9898:1:exon
so has part: feature:1-542:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:9760-9898:1:exon

position:9760:1
position: 9760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-542:1:exon

position:542:1
position: 542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PNAP_RS24710
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24710
old locus tag: Pnap_4993
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MTTATTEPRQLKPEELSTLVKAFREARQWSQEQLAEIAGLSTRTVQRVEEGQSSSLDTRRALAGAFGFDDIDAFNKPYVIPTNEQMAAEKARFEKERVTLKAVPLESGKQLGKLVEGTSANMFSEAAGMPQATEQRFAQLTDFCREYSDCSDLYSATDKLDVYAGLDDMVADLAKDGFTLVGATREVMMKTPGSESGIRVNIVYVVAFPKGQEAENLAVPRAVHFG
SIO_010081: PNAP_RS24710
subclass of: SO_0000673
so part of: PNAP_RS24710
location: join(9760..9898,1..542)
location: region:1-9898:1
so has part: feature:9760-9898:1:exon
so has part: feature:1-542:1:exon

WP_011798607.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9760-9898:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-542:1:exon

PNAP_RS24715
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24715
old locus tag: Pnap_4994
so part of: sequence
location: 847..1359
location: region:847-1359:1
so has part: feature:847-1359:1:exon
subclass of: SO_0000010

position:847:1
position: 847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1359:1
position: 1359
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:847-1359:1:exon

PNAP_RS24715
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24715
old locus tag: Pnap_4994
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008933225.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MNDEPKITTITSICVVLIREVRAERGIHQAQVADWIGKTPSAWTKVEAGKSPLPLETFVRVCNSMQVMPSAVMATAERYAALLSQKAGWVVLTTELDFSEDGLLRQAQEYWASPGCRNVIPNRWSFGSVLNGPTYNTDQSISLAAVFQFAVDPVFRELQLNPPTVIMGAL
SIO_010081: PNAP_RS24715
subclass of: SO_0000673
so part of: PNAP_RS24715
location: 847..1359
location: region:847-1359:1
so has part: feature:847-1359:1:exon

WP_232290880.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:847-1359:1:exon

PNAP_RS24720
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24720
old locus tag: Pnap_4995
so part of: sequence
location: complement(1632..1835)
location: region:1632-1835:-1
so has part: feature:1632-1835:-1:exon
subclass of: SO_0000010

position:1632:-1
position: 1632
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1835:-1
position: 1835
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1632-1835:-1:exon

PNAP_RS24720
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24720
old locus tag: Pnap_4995
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNKKTTGLAAGRPSVNKQNLSMADQPVLVRINAQVSEADHQKLKIHAAKNKTSISELLRAFIATLPD
SIO_010081: PNAP_RS24720
subclass of: SO_0000673
so part of: PNAP_RS24720
location: complement(1632..1835)
location: region:1632-1835:-1
so has part: feature:1632-1835:-1:exon

WP_041377846.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1632-1835:-1:exon

PNAP_RS24725
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24725
old locus tag: Pnap_4996
so part of: sequence
location: complement(1854..2483)
location: region:1854-2483:-1
so has part: feature:1854-2483:-1:exon
subclass of: SO_0000010

position:1854:-1
position: 1854
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2483:-1
position: 2483
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1854-2483:-1:exon

PNAP_RS24725
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24725
old locus tag: Pnap_4996
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011191432.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family partition ATPase
translation: MKVIAVLNQKGGSGKTTIATHLARVLQLDGASVVLVDSDPQGSARDWSAAREEQPLSVIGIDRPTIERDLKSLAKTDFVVIDGAPQASDLAVSAIKAANFVLIPVQPSPYDIWAAADLVDLVKQRIEVTDGRLQAAFVVSRAIAGTKLGQEVADALAGYGLPVLTSRIMQRVAYPSTAATGQTVFDLEANGDAAADFRLLKNELTQLLK
SIO_010081: PNAP_RS24725
subclass of: SO_0000673
so part of: PNAP_RS24725
location: complement(1854..2483)
location: region:1854-2483:-1
so has part: feature:1854-2483:-1:exon

WP_011798610.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1854-2483:-1:exon

PNAP_RS24730
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24730
so part of: sequence
location: complement(2712..3104)
location: region:2712-3104:-1
so has part: feature:2712-3104:-1:exon
subclass of: SO_0000010

position:2712:-1
position: 2712
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3104:-1
position: 3104
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2712-3104:-1:exon

PNAP_RS24730
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24730
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSPIVRNTVIFSVCVTTIVASAWLLRMLQVKGFVVPGYVETLFQILLLVCIGGVMWVIFSGVFAKLPDPPFIPDPLSSLPVEVQERHAKNACSFSKAFGTPAMLVIRVLGAALFLLALIVFSLAFWGWRT
SIO_010081: PNAP_RS24730
subclass of: SO_0000673
so part of: PNAP_RS24730
location: complement(2712..3104)
location: region:2712-3104:-1
so has part: feature:2712-3104:-1:exon

WP_157040572.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2712-3104:-1:exon

PNAP_RS24735
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24735
old locus tag: Pnap_4997
so part of: sequence
location: complement(3265..3564)
location: region:3265-3564:-1
so has part: feature:3265-3564:-1:exon
subclass of: SO_0000010

position:3265:-1
position: 3265
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3564:-1
position: 3564
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3265-3564:-1:exon

PNAP_RS24735
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24735
old locus tag: Pnap_4997
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005671594.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAKIEETIETLKLKLQQAKARKQKSDARKKLQERKTTHANDTRKKILLGAYMLDRMGKNEAAKLKMISQLDEYLTRADDRELFGLSPLPAAPAVEPAQT
SIO_010081: PNAP_RS24735
subclass of: SO_0000673
so part of: PNAP_RS24735
location: complement(3265..3564)
location: region:3265-3564:-1
so has part: feature:3265-3564:-1:exon

WP_011798611.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3265-3564:-1:exon

PNAP_RS28110
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS28110
so part of: sequence
location: complement(4059..4700)
location: region:4059-4700:-1
so has part: feature:4059-4700:-1:exon
subclass of: SO_0000010

position:4059:-1
position: 4059
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4700:-1
position: 4700
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4059-4700:-1:exon

PNAP_RS28110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS28110
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGADRQFPRLSGGQCCGLLFCLCLCLCFGCGHRLLCGLDLGLRDGDQGGDLAGRFGLAFLVVSGFLGRLAPALNRRGDGAKVDACVPVVNALGHKTAVVHPGAVACLRQGGVRHFREQRPALDHLIGAGLAVVQLAGLDGETFGCQLPCAAQNVRVVISTVAIFNGCIFALALVFFFMREMDRAIGGESVFSDQRLGEFMRQLLTLAGSQFGG
SIO_010081: PNAP_RS28110
subclass of: SO_0000673
so part of: PNAP_RS28110
location: complement(4059..4700)
location: region:4059-4700:-1
so has part: feature:4059-4700:-1:exon

WP_041377842.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4059-4700:-1:exon

PNAP_RS28115
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS28115
so part of: sequence
location: 4726..5001
location: region:4726-5001:1
so has part: feature:4726-5001:1:exon
subclass of: SO_0000010

position:4726:1
position: 4726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5001:1
position: 5001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4726-5001:1:exon

PNAP_RS28115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS28115
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTEFETKLLQAFTAMSQQQADQAQQLAALSASHSLTTQSLGKISQQQVDILAALSKAPEGDSITETLEQLLKPLVAALNDLSQRLPPSLAS
SIO_010081: PNAP_RS28115
subclass of: SO_0000673
so part of: PNAP_RS28115
location: 4726..5001
location: region:4726-5001:1
so has part: feature:4726-5001:1:exon

WP_041377843.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4726-5001:1:exon

PNAP_RS28120
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS28120
so part of: sequence
location: 5022..6086
location: region:5022-6086:1
so has part: feature:5022-6086:1:exon
subclass of: SO_0000010

position:5022:1
position: 5022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6086:1
position: 6086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5022-6086:1:exon

PNAP_RS28120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS28120
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAKARRAQARRRLDENKEDKAVLDLSGDLAAAKAERDRPPVWAAGIDPRSYYHPGKVAARQAAQPTPAPQVKRAAAAGVADLRTPFQRSRQEAAQQAAHPHQEDQDNPGQAERMSAAELRAEIARLRPPPLREVVERQPELVTARQSSDTLAEQWRQAQAMAAEAGRELENWRSAHPVRAKAHDSGLMRAAVLVETEQRRQEAEAQRQRLAPRVEAATEHLKRTRSSVEERVKLEQAQALAKVAELERIERQRQDQEQADRAKAQELDEVLSAFKGHALKRETKSLGYGDTGQQWNAIPEPLRKVIEDFNRLPQEARPVVLERMRENMQRDPQGVETFRQGLQSARGNDRGMSR
SIO_010081: PNAP_RS28120
subclass of: SO_0000673
so part of: PNAP_RS28120
location: 5022..6086
location: region:5022-6086:1
so has part: feature:5022-6086:1:exon

WP_232290878.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5022-6086:1:exon

PNAP_RS24755
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24755
old locus tag: Pnap_4999
so part of: sequence
location: complement(6101..6538)
location: region:6101-6538:-1
so has part: feature:6101-6538:-1:exon
subclass of: SO_0000010

position:6101:-1
position: 6101
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6538:-1
position: 6538
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6101-6538:-1:exon

PNAP_RS24755
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24755
old locus tag: Pnap_4999
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010835675.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF29 domain-containing protein
translation: MKTSYEADVVAWASEQARLIRAGRFDQLDLAHIAEEIEDVGKSEQRELASRMAVLLAHILKWKFQPQKRSVSWTLTIKEQRRLLVRRIQKTPSLGPMLVDPEWIDEIWVDAKALAEKETGLDIGAFPEVCPWDMAHVLTEDWLPE
SIO_010081: PNAP_RS24755
subclass of: SO_0000673
so part of: PNAP_RS24755
location: complement(6101..6538)
location: region:6101-6538:-1
so has part: feature:6101-6538:-1:exon

WP_011798613.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6101-6538:-1:exon

PNAP_RS26630
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS26630
old locus tag: Pnap_5000
so part of: sequence
location: complement(6535..6729)
location: region:6535-6729:-1
so has part: feature:6535-6729:-1:exon
subclass of: SO_0000010

position:6535:-1
position: 6535
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6729:-1
position: 6729
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6535-6729:-1:exon

PNAP_RS26630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS26630
old locus tag: Pnap_5000
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019271599.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: rep protein
translation: MAERFNCSIRTVMRAIALPREEYLASHTVNRSKPWEALGMSRATWYRKGKPLDAPANPKLEEVA
SIO_010081: PNAP_RS26630
subclass of: SO_0000673
so part of: PNAP_RS26630
location: complement(6535..6729)
location: region:6535-6729:-1
so has part: feature:6535-6729:-1:exon

WP_232290879.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6535-6729:-1:exon

PNAP_RS26635
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS26635
old locus tag: Pnap_5001
so part of: sequence
location: 7191..7706
location: region:7191-7706:1
so has part: feature:7191-7706:1:exon
subclass of: SO_0000010

position:7191:1
position: 7191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7706:1
position: 7706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7191-7706:1:exon

PNAP_RS26635
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS26635
old locus tag: Pnap_5001
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEKTKAICVLTAQGIDKILAVGGSQAWVVDPKRARKHEYVVCVQNRVSDDWGDASAPHHRAFLVGRLKDVVPSKHKGCEDRWLLAFSEYAEIDVPDAWPGFRNPVLYTDLESFGIDVEALQFHRMPALEPELALVVQPGGAYGPLTIAEAKKGLALAFGVEPTDIEITVRG
SIO_010081: PNAP_RS26635
subclass of: SO_0000673
so part of: PNAP_RS26635
location: 7191..7706
location: region:7191-7706:1
so has part: feature:7191-7706:1:exon

WP_011798615.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7191-7706:1:exon

PNAP_RS24765
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24765
old locus tag: Pnap_5002
so part of: sequence
location: 8054..8710
location: region:8054-8710:1
so has part: feature:8054-8710:1:exon
subclass of: SO_0000010

position:8054:1
position: 8054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8710:1
position: 8710
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8054-8710:1:exon

PNAP_RS24765
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24765
old locus tag: Pnap_5002
inference: COORDINATES: protein motif:HMM:NF023168.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA-binding protein
translation: MTTDAQAGPITLADVRAALADTDPSRTNAGALRKVLGRGSYATIQKHLDAIRAERAPAPPEAPGAVPAPPAEALHAIWGAAWAQAQVMTLARMERLSAERDTALALAAAQAQDVAGLAAEIDAQAAAAQDLADSQAQALAAAQGVALEATARADRQAQELAAARAEIERITAAAAQAAALAEREATIERQTLQAALERQIDKYTDLKAVVDHLKPMAG
SIO_010081: PNAP_RS24765
subclass of: SO_0000673
so part of: PNAP_RS24765
location: 8054..8710
location: region:8054-8710:1
so has part: feature:8054-8710:1:exon

WP_011798616.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8054-8710:1:exon

PNAP_RS24770
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24770
old locus tag: Pnap_5003
so part of: sequence
location: complement(8745..8942)
location: region:8745-8942:-1
so has part: feature:8745-8942:-1:exon
subclass of: SO_0000010

position:8745:-1
position: 8745
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8942:-1
position: 8942
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8745-8942:-1:exon

PNAP_RS24770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24770
old locus tag: Pnap_5003
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011798539.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKLTHELLMQYRTPAGLWRKVQLQALGLDWPPLKGWIQRVVGMELTDEQFKQFTGHDPDQRDLFG
SIO_010081: PNAP_RS24770
subclass of: SO_0000673
so part of: PNAP_RS24770
location: complement(8745..8942)
location: region:8745-8942:-1
so has part: feature:8745-8942:-1:exon

WP_041377845.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8745-8942:-1:exon