Polaromonas naphthalenivorans CJ2 plasmid pPNAP06, complete sequence.
type: Entry
definition: Polaromonas naphthalenivorans CJ2 plasmid pPNAP06, complete sequence.
sequence version: NC_008762.1
sequence date: 2022-12-28
sequence: sequence
division: CON
label: NC_008762.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02598302
keyword: RefSeq
source: Polaromonas naphthalenivorans CJ2
organism: Polaromonas naphthalenivorans CJ2
taxonomy: Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP000535.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4000361\nSource DNA and bacteria available from Eugene L. Madsen\n(elm3@cornell.edu)\nContacts: Eugene L. Madsen (elm3@cornell.edu)\n Paul Richardson (microbes@cuba.jgi-psf.org)\nQuality assurance done by JGI-Stanford\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-LANL\nFinished microbial genomes have been curated to close all gaps with\ngreater than 98% coverage of at least two independent clones. Each\nbase pair has a minimum q (quality) value of 30 and the total error\nrate is less than one per 50000.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/28/2022 02:04:21\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,174\nCDSs (total) :: 5,114\nGenes (coding) :: 4,993\nCDSs (with protein) :: 4,993\nGenes (RNA) :: 60\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 3\nPseudo Genes (total) :: 121\nCDSs (without protein) :: 121\nPseudo Genes (ambiguous residues) :: 0 of 121\nPseudo Genes (frameshifted) :: 42 of 121\nPseudo Genes (incomplete) :: 93 of 121\nPse…

sequence
subclass of: SO_0000155
sequence length: 21611
topology: circular
so has quality: SO_0000988
location: 1..21611
location: region:1-21611:1
RO_0002162: 365044

NC_008762
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02598302
type: BioSample
SIO_000068: biosample

1
title: Complete sequence of plasmid pPNAP06 of Polaromonas naphthalenivorans CJ2
author: Copeland, A.
author: Lucas, S.
author: Lapidus, A.
author: Barry, K.
author: Detter, J.C.
author: Glavina del Rio, T.
author: Hammon, N.
author: Israni, S.
author: Dalin, E.
author: Tice, H.
author: Pitluck, S.
author: Sims, D.R.
author: Brettin, T.
author: Bruce, D.
author: Han, C.
author: Tapia, R.
author: Brainard, J.
author: Schmutz, J.
author: Larimer, F.
author: Land, M.
author: Hauser, L.
author: Kyrpides, N.
author: Kim, E.
author: Madsen, E.L.
author: Richardson, P.
journal: Unpublished

2
title: Direct Submission
author: Copeland, A.
author: Lucas, S.
author: Lapidus, A.
author: Barry, K.
author: Detter, J.C.
author: Glavina del Rio, T.
author: Hammon, N.
author: Israni, S.
author: Dalin, E.
author: Tice, H.
author: Pitluck, S.
author: Sims, D.R.
author: Brettin, T.
author: Bruce, D.
author: Han, C.
author: Tapia, R.
author: Brainard, J.
author: Schmutz, J.
author: Larimer, F.
author: Land, M.
author: Hauser, L.
author: Kyrpides, N.
author: Kim, E.
author: Madsen, E.L.
author: Richardson, P.
journal: Submitted (21-DEC-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21611:1
position: 21611
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-21611:1:source
so part of: sequence
organism: Polaromonas naphthalenivorans CJ2
mol type: genomic DNA
strain: CJ2
type material: type strain of Polaromonas naphthalenivorans
plasmid: pPNAP06

365044
type: Taxonomy
SIO_000068: taxonomy

PNAP_RS26600
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS26600
old locus tag: Pnap_4973
so part of: sequence
location: join(21609..21611,1..1119)
location: region:1-21611:1
so has part: feature:21609-21611:1:exon
so has part: feature:1-1119:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:21609-21611:1:exon

position:21609:1
position: 21609
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-1119:1:exon

position:1119:1
position: 1119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PNAP_RS26600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS26600
old locus tag: Pnap_4973
EC number: 2.1.1.37
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: DNA cytosine methyltransferase
translation: MTKPSAHPKARSPRSSNPPKADRIEAIDLFCGAGGLSCGLKKVGVRVVAGIDVDAACQYPYEANHRGAKFLLQDVTTLTGADLEALWSPTSVRLLAGCAPCQPFSSYANTKASSENDKWGLLYQFGRLVTETKPDLVTMENVPGLAAQAPFKAFLHTLKTLGYSIEYAVLNAADYGAPQQRKRLVLLASLLGPVQMPAATHPGSANWVTVRKAVGALPAIGDGEASAHDPLHRAAALSALNQQRVRASRPGGTWRDWPPDLVAECHRKASGRHSAGVYGRMEWDKPAPTMTTLCIGYGNGRFGHPQQHRGISLREAAIFQSFPTSYKFVKPGMRVLAKPLARLIGNAVPPKLGEAVGRALQAAVRSRGGTTRV
SIO_010081: PNAP_RS26600
subclass of: SO_0000673
so part of: PNAP_RS26600
location: join(21609..21611,1..1119)
location: region:1-21611:1
so has part: feature:21609-21611:1:exon
so has part: feature:1-1119:1:exon

WP_011798587.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21609-21611:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-1119:1:exon

PNAP_RS24625
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24625
old locus tag: Pnap_4974
so part of: sequence
location: complement(1046..1798)
location: region:1046-1798:-1
so has part: feature:1046-1798:-1:exon
subclass of: SO_0000010

position:1046:-1
position: 1046
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1798:-1
position: 1798
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1046-1798:-1:exon

PNAP_RS24625
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24625
old locus tag: Pnap_4974
inference: COORDINATES: protein motif:HMM:NF037890.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MAE_28990/MAE_18760 family HEPN-like nuclease
translation: MPAALSRSLLNARATEVRAYLAFLQAALERGAELNARSLAAPLELDIELTHTLKANTYLLLYNVVEATMTQLIGDIHRTVKQSGAVLDELHPQMYLHILRRFQNVKIDIPETTALVPSGTAIIDHWLNDYETRAKAYSNYLLSGNVDSKRIREIGRNYGFASLEKGQDAHLSHASLLTTKTHRNMLAHGEVSFRDCGQLLAYADVDRDTNGLLNCLVSVVDHVDNYLKRGLYLRANVPPPVTPAPPPPLA
SIO_010081: PNAP_RS24625
subclass of: SO_0000673
so part of: PNAP_RS24625
location: complement(1046..1798)
location: region:1046-1798:-1
so has part: feature:1046-1798:-1:exon

WP_011798588.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1046-1798:-1:exon

PNAP_RS24630
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24630
old locus tag: Pnap_4975
so part of: sequence
location: complement(1798..2982)
location: region:1798-2982:-1
so has part: feature:1798-2982:-1:exon
subclass of: SO_0000010

position:2982:-1
position: 2982
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1798-2982:-1:exon

PNAP_RS24630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24630
old locus tag: Pnap_4975
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012312618.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF262 domain-containing protein
translation: MTKETLPLPIDDPKVLADRLDEQIDAIRKVTDFEIREYPIEVLVDKFTKGLETDEAEVFIPDYQREFIWTARQQSRFIESLLMNLPVPYMFVADVPDGPRAGHLEIIDGSQRMRTLVNFLQNKLTLEQLQKVDLAIGLKLQDFSPPGQLRFKRKTVRVIELTRRADNEARREMFDRLNSGGTKLESMETRRGTLDGSFLRVIEACAKMPLFKILCPVSKALADRAEHVELVLRYFAYCDNYAGFTKRVDSFLTDYLKARNQADDRQAEEASVQEFETMLAFVQGQMPNGFRKSPTTNTVARIRFECLSVGTTLALREQPALVPINVNAWLESEEFIHHTRSDASNSRPKVVNRIHFVRDNLIGRPVQYDGDTAKVEASANLDAPPEAEQLSLLV
SIO_010081: PNAP_RS24630
subclass of: SO_0000673
so part of: PNAP_RS24630
location: complement(1798..2982)
location: region:1798-2982:-1
so has part: feature:1798-2982:-1:exon

WP_011798589.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1798-2982:-1:exon

PNAP_RS24635
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24635
old locus tag: Pnap_4976
so part of: sequence
location: complement(3010..3705)
location: region:3010-3705:-1
so has part: feature:3010-3705:-1:exon
subclass of: SO_0000010

position:3010:-1
position: 3010
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3705:-1
position: 3705
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3010-3705:-1:exon

PNAP_RS24635
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24635
old locus tag: Pnap_4976
inference: COORDINATES: protein motif:HMM:NF012920.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: S24 family peptidase
translation: MLKDIKQTLAENLTALLQRYPDVSRMELSRRMDVADGTLGRIKYASGNPQLANLVQIACFFKLRPWQLLVKDGYKLPRDFDPSKQPVPKIEDGHVRISRFNARPSAILGSESESFSMVLGHIDVAEAWARKHLGVQLDSVRAVTVAGDGMSPTINEGDLAFIDADCRRFETDGIYVVLFNEAVMTKRLSADFATRKIHVRSDNDKHDPQLVAQNELTICGRVLAWLTLREH
SIO_010081: PNAP_RS24635
subclass of: SO_0000673
so part of: PNAP_RS24635
location: complement(3010..3705)
location: region:3010-3705:-1
so has part: feature:3010-3705:-1:exon

WP_041377832.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3010-3705:-1:exon

PNAP_RS25380
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS25380
old locus tag: Pnap_4977
so part of: sequence
location: complement(3998..4507)
location: region:3998-4507:-1
so has part: feature:3998-4507:-1:exon
subclass of: SO_0000010

position:3998:-1
position: 3998
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4507:-1
position: 4507
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3998-4507:-1:exon

PNAP_RS25380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS25380
old locus tag: Pnap_4977
inference: COORDINATES: protein motif:HMM:NF027788.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 3'-5' exoribonuclease
translation: MLVFLDTEFTEFVRPDLISIALVSEDGREFYAERTDYCQADCSDFVRETVQPLLGRVPGAACSRPALTDRVRDWFARLPEPATVIFDYEWDWYLLAVAMLGRPHSKPPGDFAKQLYLNSYTITHPVFERAQNHIYTQDWPPHHALSDARALMAGYRAWHKFMEPIWRIQ
SIO_010081: PNAP_RS25380
subclass of: SO_0000673
so part of: PNAP_RS25380
location: complement(3998..4507)
location: region:3998-4507:-1
so has part: feature:3998-4507:-1:exon

WP_011798591.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3998-4507:-1:exon

PNAP_RS26605
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS26605
old locus tag: Pnap_4978
so part of: sequence
location: complement(4501..4917)
location: region:4501-4917:-1
so has part: feature:4501-4917:-1:exon
subclass of: SO_0000010

position:4501:-1
position: 4501
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4917:-1
position: 4917
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4501-4917:-1:exon

PNAP_RS26605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS26605
old locus tag: Pnap_4978
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011486318.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNMHSIQNEADYKAALKIVSALVDVDPQRGTLEADRLEALGFLVEAYESGLAKSMLQGGNLESAMGHDGIDHSLYTLADYPVLAALAQERTSATKLDGRACRFLYTEAGSRMDGTTVSAQEIAFMRALEVDVRGVTPC
SIO_010081: PNAP_RS26605
subclass of: SO_0000673
so part of: PNAP_RS26605
location: complement(4501..4917)
location: region:4501-4917:-1
so has part: feature:4501-4917:-1:exon

WP_011798592.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4501-4917:-1:exon

PNAP_RS27495
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS27495
so part of: sequence
location: complement(4914..5084)
location: region:4914-5084:-1
so has part: feature:4914-5084:-1:exon
subclass of: SO_0000010

position:4914:-1
position: 4914
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5084:-1
position: 5084
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4914-5084:-1:exon

PNAP_RS27495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS27495
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MANLEQPPTPRKERKLSHLTLYFPVTAKIGTIGIYRLDAGGLRLVRRLTGVKLEQT
SIO_010081: PNAP_RS27495
subclass of: SO_0000673
so part of: PNAP_RS27495
location: complement(4914..5084)
location: region:4914-5084:-1
so has part: feature:4914-5084:-1:exon

WP_157040569.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4914-5084:-1:exon

PNAP_RS24650
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24650
old locus tag: Pnap_4979
so part of: sequence
location: complement(5113..5346)
location: region:5113-5346:-1
so has part: feature:5113-5346:-1:exon
subclass of: SO_0000010

position:5113:-1
position: 5113
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5346:-1
position: 5346
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5113-5346:-1:exon

PNAP_RS24650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24650
old locus tag: Pnap_4979
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005934673.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSTKKIAFGTKPTNKPEPAPVDSWVENRAAGEAEAMKRLTIDIPESLHRTIKSQCAMRGTKIADEVRELLLKKYGNQ
SIO_010081: PNAP_RS24650
subclass of: SO_0000673
so part of: PNAP_RS24650
location: complement(5113..5346)
location: region:5113-5346:-1
so has part: feature:5113-5346:-1:exon

WP_011798593.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5113-5346:-1:exon

PNAP_RS24655
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24655
old locus tag: Pnap_4980
so part of: sequence
location: complement(5343..5972)
location: region:5343-5972:-1
so has part: feature:5343-5972:-1:exon
subclass of: SO_0000010

position:5343:-1
position: 5343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5972:-1
position: 5972
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5343-5972:-1:exon

PNAP_RS24655
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24655
old locus tag: Pnap_4980
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017173693.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family partition ATPase
translation: MIFGVLNQKGGVGKTTLSVNLAACFARAGARVLLIDADPQGSALDWAAARQGPPLFSVVGFPRATIHKEISQLGQGYDHIIIDGPPRVTDLARSAIMASDVVVIPVQPSPYDIWAAEEVVKLIAEAHIYKENIKSVFVVNRKITNTAIGRDVRDALAAYPIRVLDASVAQRVVFAEAAAQGQAIFEIDPAGPAVAEIEAVAAELMEYAK
SIO_010081: PNAP_RS24655
subclass of: SO_0000673
so part of: PNAP_RS24655
location: complement(5343..5972)
location: region:5343-5972:-1
so has part: feature:5343-5972:-1:exon

WP_011798594.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5343-5972:-1:exon

PNAP_RS25385
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS25385
old locus tag: Pnap_4981
so part of: sequence
location: complement(6171..7070)
location: region:6171-7070:-1
so has part: feature:6171-7070:-1:exon
subclass of: SO_0000010

position:6171:-1
position: 6171
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7070:-1
position: 7070
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6171-7070:-1:exon

PNAP_RS25385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS25385
old locus tag: Pnap_4981
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011798538.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA-binding protein
translation: MAIVTFESVATAAEALQAAGQRASVRAVTAAIGGGSPNAVLKLLAEWKAGRPVVRIADTELDHRITDAIKVQMQRVAEQAAATAEERAAAAADDLQAISEAQAAAEQQITVLTTERDAAQTKAASIDEQLKAAQADAHRAAEQATASATALRQELMTERQRQETTAAALARAEVRLEAVPGLQAEIERLRIALETDQQARQQAEQQAAVLTAKLEAADRRATEADARTTKAEARTDAVARELLNANAIVQAGQARLESAARELEEAKKAVATAQAAAKKSSEEAAELRGAKPKAAKAQV
SIO_010081: PNAP_RS25385
subclass of: SO_0000673
so part of: PNAP_RS25385
location: complement(6171..7070)
location: region:6171-7070:-1
so has part: feature:6171-7070:-1:exon

WP_011798595.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6171-7070:-1:exon

PNAP_RS25390
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS25390
old locus tag: Pnap_4982
so part of: sequence
location: complement(7158..9791)
location: region:7158-9791:-1
so has part: feature:7158-9791:-1:exon
subclass of: SO_0000010

position:7158:-1
position: 7158
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9791:-1
position: 9791
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7158-9791:-1:exon

PNAP_RS25390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS25390
old locus tag: Pnap_4982
inference: COORDINATES: protein motif:HMM:NF015397.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: relaxase/mobilization nuclease domain-containing protein
translation: MIVKKIPNKKAGGTKSARVAGVANYIVEPQRENGMEKCIHHEADNFLTDTHEGHVAEMIALAQDAVRSKDPIDHWVLSWRPNERPSVDQVREAVKMFVGHCGLTGHQVIWGLHDDTKNLHVHIAVNRVHPDTLKVIEINKGFQLNAAHQAIAIIEKKQGWKSVENARYQTNDNGELLADSKTKRPAVNKAKDKPLEPTGPAQDMEIQTGQKSAQRIGIENAAPIIAKASSWKDLHTQMAAAGLEYRREGSGAKVYVGDIGVKASDIDRKASFGNLQKRFGPYQPPQEIKPNEYHHHTPQPYPTAIRDTATNGLRKLSECNLAVLKNQGQTRRKGVLHVDACPGGRPVDGLRRVAGRDNSTGLTPQPMRQGQPGWNEYIAIRDAHKAAKTHDTIELQKRHGAERAALLAKLKTERTEALSGNWQDKGPQRNALQSLLAPLQAAEKLELSERHRAERKALQAQYKPLPMYRQWKEQPQIVSLHVLPVTERSTATSTVASTLRALTSTVDARKHITYQLAQKDVFRDEGRSIQILDLKSDRGIAAALATAQQKFGQTLELTGSDEFKKNAVAVAVANGLTCKFADPQLDKLREQLQQQKYEAAREAARAERDRAAAAQLEKSKEPAPLHSPSNNPGEAVSLDSGPQTLDPAPEAQPIELELDMKGLVTDRERELVQRIDAAIKANDSAELQSCMDAFGGVRNEAAKALGAVAPQEVNRAAIAHQVKTEQNAAAAKRGDPEPWYVSGIGSKTGACAWDAITAKACAERDTHAGTQRPTGMFKGAEGKAWDERSADLSAKATGWAKAAEGIKRELALTTEQRVTKEAEAVTASNRKNTAQHAKQLERYESLAVAEKRLETALQPHKERERELARENSRGQGL
SIO_010081: PNAP_RS25390
subclass of: SO_0000673
so part of: PNAP_RS25390
location: complement(7158..9791)
location: region:7158-9791:-1
so has part: feature:7158-9791:-1:exon

WP_198140752.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7158-9791:-1:exon

PNAP_RS24670
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24670
old locus tag: Pnap_4983
so part of: sequence
location: complement(9788..10108)
location: region:9788-10108:-1
so has part: feature:9788-10108:-1:exon
subclass of: SO_0000010

position:9788:-1
position: 9788
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10108:-1
position: 10108
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9788-10108:-1:exon

PNAP_RS24670
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24670
old locus tag: Pnap_4983
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014003869.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobB mobilization protein
translation: MVFKAIGDEPLDTKVDVRLTSEEKARLQEDAEFAGMSMSALVRARYFGRPIIANTDQVMIRELRRQGGLLNKVHLESDGAYSAETAAALRLISDAIKSISQAGRSK
SIO_010081: PNAP_RS24670
subclass of: SO_0000673
so part of: PNAP_RS24670
location: complement(9788..10108)
location: region:9788-10108:-1
so has part: feature:9788-10108:-1:exon

WP_041377833.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9788-10108:-1:exon

PNAP_RS26610
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS26610
old locus tag: Pnap_4984
so part of: sequence
location: 10429..10821
location: region:10429-10821:1
so has part: feature:10429-10821:1:exon
subclass of: SO_0000010

position:10429:1
position: 10429
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10821:1
position: 10821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10429-10821:1:exon

PNAP_RS26610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS26610
old locus tag: Pnap_4984
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNKAIRKYDIAEYAAKGGDAIDRMMATQQAGKLVKGSKHDVCVAMREKLKVALEAGFTVQQIAEALKDGDVFGILPKTILEIVKGDKKPVVRRKAKGTTETKKTTSEPVSTPKTLPDSTTKQVTRIVDAT
SIO_010081: PNAP_RS26610
subclass of: SO_0000673
so part of: PNAP_RS26610
location: 10429..10821
location: region:10429-10821:1
so has part: feature:10429-10821:1:exon

WP_011798598.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10429-10821:1:exon

PNAP_RS26615
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS26615
old locus tag: Pnap_4985
so part of: sequence
location: 10818..11522
location: region:10818-11522:1
so has part: feature:10818-11522:1:exon
subclass of: SO_0000010

position:10818:1
position: 10818
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11522:1
position: 11522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10818-11522:1:exon

PNAP_RS26615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS26615
old locus tag: Pnap_4985
inference: COORDINATES: protein motif:HMM:NF013793.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKNYIYVTGGKGGIGKSFVSMLVADYMATKEQVLLIDTDMTNSDCNAVYKDKKQSTIECNVQQLRSEDTSGQVDTSGLLSTFNVDRECVVVDAPAGDTVLLANAGSMINEMCQEYKAKSVIVWLADSGDQNAVNGLNAVFEQIKNVDLILIVKNFKSSTDFDLLDKSNTLTKFKSLPNCHVVDFPKIAARITKRVRTDKNSFVEMISENTPIGDRVEARRVRSLMHKVFEEAGL
SIO_010081: PNAP_RS26615
subclass of: SO_0000673
so part of: PNAP_RS26615
location: 10818..11522
location: region:10818-11522:1
so has part: feature:10818-11522:1:exon

WP_011798599.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10818-11522:1:exon

PNAP_RS26620
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS26620
old locus tag: Pnap_4986
so part of: sequence
location: 11519..12316
location: region:11519-12316:1
so has part: feature:11519-12316:1:exon
subclass of: SO_0000010

position:11519:1
position: 11519
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12316:1
position: 12316
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11519-12316:1:exon

PNAP_RS26620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS26620
old locus tag: Pnap_4986
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKFAKAFETLNGRPPETADIRRFQTLTNALETTPEDAILSIFVACDHYEMMYEKIPAQIIEALRVAVETANRAAKLVVDDASGKVQTIVAGSLVPLAKDAFEKGVNRYIDQIDGEARNYAKTKAIPVAIATVAMAVLVGIGLGWAGGTWARSDADATAIASAAVAQKTVAGQLAQKDAEAAATIANLKAEQAATIANLNAAKVWSGTAEGQLAYKFFTVGSGALAAKCQAEHWTLGKNGKGEKLCIPQHEKWSGWTEGSEGWVIP
SIO_010081: PNAP_RS26620
subclass of: SO_0000673
so part of: PNAP_RS26620
location: 11519..12316
location: region:11519-12316:1
so has part: feature:11519-12316:1:exon

WP_011798600.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11519-12316:1:exon

PNAP_RS24680
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24680
old locus tag: Pnap_4987
so part of: sequence
location: complement(13196..16660)
location: region:13196-16660:-1
so has part: feature:13196-16660:-1:exon
subclass of: SO_0000010

position:13196:-1
position: 13196
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16660:-1
position: 16660
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13196-16660:-1:exon

PNAP_RS24680
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24680
old locus tag: Pnap_4987
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011458726.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: class I SAM-dependent DNA methyltransferase
translation: MKNNNKLDNTPEAFIALWQGVTASELSTSQSFIINLCELLGVPRPHATPAQEYMFERPVTFSYADGTSSAGRVDCYRRGCFIAESKKLKASVGTERFSRNLLEAHAQAQNYARALPADEGRPPFLLVIDVGTVIEVYAEFSRSGGTYIPFPDPRSHRIALADLLKPEVRERLRLIWTNPDQLDPARISAEVTGIVSAQLARLAKSLEDARHSAANVAAYLTRALFSMFAEDVELLPKGAFFGLLKAHREAPATLQSMLQALWADMDRGGFSGALARNILKFNGKLFKGANTPGYSLLLTTAQIDLLIGAAKANWREVEPAIFGTLLERALNPAERHALGAHYTPRAYVERLVLPAVLEPLRAEWANVQAAALVLVNEAAELDSKKQSKAKLTEARAEVRRFHHRLCTLRVLDPACGSGNFLYVTLEHLKRLEGEVFNQLDALGDTQAKLTLEGETVTLQQLRGIELNPRAAALAELVLWIGYLQWQIRTFGNAGVAEPVVHNYGNIENRDAVLAWDGRAPALNAHGQPLTRWDGVTLKIHPVTGESVPDEAAQVPQWRYSGARQADWPAADFIVGNPPFIGASPMRAALGDGYVEALRQAWPQVPDSADFVMFWWSRAAGLVSTGQAQRMGLITTNSLRQTFNRRVVQAALGQSTALAFAVPDHPWVDSADGAAVRIAMTVLQPGAGEGRLQTVTSETPGQDGEVAVTLDERRGVIHADLSVGVNVTAAVSLQAMSGISSPGVKLHGAGFIVTPAEAAALGQPAIIRDYRNGRDLTDKPRGVQIIDAFGLSADELRSQYPAVYQWLLDRVKPERDAKGTSKDGAGYAKLWWLHGKPRQEMRKQLTGLPRYIATVETAKHRLFQFLDASILPDNKLIAIALDDAFCLGVLSSRLHTAWALATGSWLGVGNDPVYVKSRCFETFPFPAADTGLTPALTDKIRQLAEQIDAHRKKQQAAHADVTLTGLYNVLEKLRTGEALTAKDKTLHEHGLVGVLRSLHDELDAAVLASYGWSDLYPFTAAPDALLARLVALNAQRTAEEAKGTVRWLRPAFQAPSQGQQAAIAMPEQAALTAKGKKAKSLKASAAQPWPASMPEQVKAVADVLAQTGTAMDLDAIAAHFSSRGRWRERLPSILETLVVLGRVHAQSASLWVNVG
SIO_010081: PNAP_RS24680
subclass of: SO_0000673
so part of: PNAP_RS24680
location: complement(13196..16660)
location: region:13196-16660:-1
so has part: feature:13196-16660:-1:exon

WP_011798601.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13196-16660:-1:exon

PNAP_RS24685
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24685
old locus tag: Pnap_4988
so part of: sequence
location: complement(17280..18218)
location: region:17280-18218:-1
so has part: feature:17280-18218:-1:exon
subclass of: SO_0000010

position:17280:-1
position: 17280
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18218:-1
position: 18218
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17280-18218:-1:exon

PNAP_RS24685
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24685
old locus tag: Pnap_4988
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010643051.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiator protein A
translation: MAEDKNTKKRTEVEIQAMLAKLRAKGKENQNEIRAAIVEDLKKFKEPPPSVLAPVKHLQKDFFIADIFDTAIKDDMASMEHPLFALKAGDMRVRVYERNGNSVTIKPGSDGCATIHDKDVWIYCTSQLIEAMNRGRDDVSRTVRFTAYNFLVTTNRPVDGDSYKRMGDALARLRGTSIETNIITDGQRERAGFGLIDSWRVIEKTAGGRMVAVEVTLSDWLYRSIKAKQVLTLSPDYFRIRKPADRRMYELARKHCGAQRQWQCTIKTLYEKSGSTANLREFRRTVKTLVESDELPDYKVGMVDDMVTFIRR
SIO_010081: PNAP_RS24685
subclass of: SO_0000673
so part of: PNAP_RS24685
location: complement(17280..18218)
location: region:17280-18218:-1
so has part: feature:17280-18218:-1:exon

WP_011798602.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17280-18218:-1:exon

PNAP_RS24690
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24690
old locus tag: Pnap_4989
so part of: sequence
location: complement(18290..18595)
location: region:18290-18595:-1
so has part: feature:18290-18595:-1:exon
subclass of: SO_0000010

position:18290:-1
position: 18290
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18595:-1
position: 18595
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18290-18595:-1:exon

PNAP_RS24690
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24690
old locus tag: Pnap_4989
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011993101.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MKPKPQLEWRQQAIDDLVEIVEYIAEDNPDAAQELKDEIEEKAAKLPDHPKLYKPSPRVKGMRELVARSNYIVLYRETPTLVEVVNVFHARQQWPTRKKET
SIO_010081: PNAP_RS24690
subclass of: SO_0000673
so part of: PNAP_RS24690
location: complement(18290..18595)
location: region:18290-18595:-1
so has part: feature:18290-18595:-1:exon

WP_011798603.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18290-18595:-1:exon

PNAP_RS24695
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24695
old locus tag: Pnap_4990
so part of: sequence
location: complement(18573..19037)
location: region:18573-19037:-1
so has part: feature:18573-19037:-1:exon
subclass of: SO_0000010

position:18573:-1
position: 18573
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19037:-1
position: 19037
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18573-19037:-1:exon

PNAP_RS24695
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24695
old locus tag: Pnap_4990
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010104843.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSTTANTIDHLTLERLVEAGAVRGADVIGHPGGWGVIVKYGMTERALAARRGAVRTFRKFETLVGYLKDVGICEYHVNAANFDAAALKTTRVRPDSSERMRSAFEASAQTKRMQQQADASLADTRPNVSHEQAMSSVQAVIDTKRKKHEAKAAA
SIO_010081: PNAP_RS24695
subclass of: SO_0000673
so part of: PNAP_RS24695
location: complement(18573..19037)
location: region:18573-19037:-1
so has part: feature:18573-19037:-1:exon

WP_011798604.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18573-19037:-1:exon

PNAP_RS24700
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24700
old locus tag: Pnap_4991
so part of: sequence
location: complement(19167..19736)
location: region:19167-19736:-1
so has part: feature:19167-19736:-1:exon
subclass of: SO_0000010

position:19167:-1
position: 19167
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19736:-1
position: 19736
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19167-19736:-1:exon

PNAP_RS24700
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24700
old locus tag: Pnap_4991
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014090299.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MSQRIGYARVSTDDQNLDLQRDALTRSGCITIYEETASGKSATRIELAHCLKSLRSGDTLVVWRLDRLGRSLSDLVKIIGDLEREGIPFESLSEKIDTGSASGKLQFHVFAALAEFERNLIRERTLAGLTAARARGRVGGRKPKLNEKQIREIKTLLTDPAAQVKDIAERYGVSRTTLYKRVGVVQPLK
SIO_010081: PNAP_RS24700
subclass of: SO_0000673
so part of: PNAP_RS24700
location: complement(19167..19736)
location: region:19167-19736:-1
so has part: feature:19167-19736:-1:exon

WP_011798605.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19167-19736:-1:exon

PNAP_RS24705
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24705
old locus tag: Pnap_4992
so part of: sequence
location: complement(20107..20820)
location: region:20107-20820:-1
so has part: feature:20107-20820:-1:exon
subclass of: SO_0000010

position:20107:-1
position: 20107
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20820:-1
position: 20820
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20107-20820:-1:exon

PNAP_RS24705
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24705
old locus tag: Pnap_4992
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014494624.1
GO function: GO:0003678 - DNA helicase activity [Evidence IEA]
GO process: GO:0006260 - DNA replication [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA helicase
translation: MKMSVPVYSLKRLAKDLSRERKIPLHAALNRVAQEEGFASWSLLAARLSAESPARELLSQLAPGDLVLLGARPGHGKTLMGLELAVKSVQSGRYGWFFTLEWNMSDLLSGLRTLGKDPSAIGERFEFDNSNAICATYIIDQLASAESGTVVVIDYLQLLDQKREHPELAVQVRSLKAFARDRGLIVVFISQIDRSYDPVASPLPGLADVRLPNPLDLTLFDRTCFLNNGAIQVSAVN
SIO_010081: PNAP_RS24705
subclass of: SO_0000673
so part of: PNAP_RS24705
location: complement(20107..20820)
location: region:20107-20820:-1
so has part: feature:20107-20820:-1:exon

WP_011798606.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20107-20820:-1:exon