Polaromonas naphthalenivorans CJ2 plasmid pPNAP05, complete sequence.
type: Entry
definition: Polaromonas naphthalenivorans CJ2 plasmid pPNAP05, complete sequence.
sequence version: NC_008761.1
sequence date: 2022-12-28
sequence: sequence
division: CON
label: NC_008761.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02598302
keyword: RefSeq
source: Polaromonas naphthalenivorans CJ2
organism: Polaromonas naphthalenivorans CJ2
taxonomy: Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP000534.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4000361\nSource DNA and bacteria available from Eugene L. Madsen\n(elm3@cornell.edu)\nContacts: Eugene L. Madsen (elm3@cornell.edu)\n Paul Richardson (microbes@cuba.jgi-psf.org)\nQuality assurance done by JGI-Stanford\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-LANL\nFinished microbial genomes have been curated to close all gaps with\ngreater than 98% coverage of at least two independent clones. Each\nbase pair has a minimum q (quality) value of 30 and the total error\nrate is less than one per 50000.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/28/2022 02:04:21\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,174\nCDSs (total) :: 5,114\nGenes (coding) :: 4,993\nCDSs (with protein) :: 4,993\nGenes (RNA) :: 60\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 3\nPseudo Genes (total) :: 121\nCDSs (without protein) :: 121\nPseudo Genes (ambiguous residues) :: 0 of 121\nPseudo Genes (frameshifted) :: 42 of 121\nPseudo Genes (incomplete) :: 93 of 121\nPse…

sequence
subclass of: SO_0000155
sequence length: 58808
topology: circular
so has quality: SO_0000988
location: 1..58808
location: region:1-58808:1
RO_0002162: 365044

NC_008761
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02598302
type: BioSample
SIO_000068: biosample

1
title: Complete sequence of plasmid pPNAP05 of Polaromonas naphthalenivorans CJ2
author: Copeland, A.
author: Lucas, S.
author: Lapidus, A.
author: Barry, K.
author: Detter, J.C.
author: Glavina del Rio, T.
author: Hammon, N.
author: Israni, S.
author: Dalin, E.
author: Tice, H.
author: Pitluck, S.
author: Sims, D.R.
author: Brettin, T.
author: Bruce, D.
author: Han, C.
author: Tapia, R.
author: Brainard, J.
author: Schmutz, J.
author: Larimer, F.
author: Land, M.
author: Hauser, L.
author: Kyrpides, N.
author: Kim, E.
author: Madsen, E.L.
author: Richardson, P.
journal: Unpublished

2
title: Direct Submission
author: Copeland, A.
author: Lucas, S.
author: Lapidus, A.
author: Barry, K.
author: Detter, J.C.
author: Glavina del Rio, T.
author: Hammon, N.
author: Israni, S.
author: Dalin, E.
author: Tice, H.
author: Pitluck, S.
author: Sims, D.R.
author: Brettin, T.
author: Bruce, D.
author: Han, C.
author: Tapia, R.
author: Brainard, J.
author: Schmutz, J.
author: Larimer, F.
author: Land, M.
author: Hauser, L.
author: Kyrpides, N.
author: Kim, E.
author: Madsen, E.L.
author: Richardson, P.
journal: Submitted (21-DEC-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:58808:1
position: 58808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-58808:1:source
so part of: sequence
organism: Polaromonas naphthalenivorans CJ2
mol type: genomic DNA
strain: CJ2
type material: type strain of Polaromonas naphthalenivorans
plasmid: pPNAP05

365044
type: Taxonomy
SIO_000068: taxonomy

PNAP_RS26560
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS26560
old locus tag: Pnap_4760
so part of: sequence
location: 1158..1565
location: region:1158-1565:1
so has part: feature:1158-1565:1:exon
subclass of: SO_0000010

position:1158:1
position: 1158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1565:1
position: 1565
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1158-1565:1:exon

PNAP_RS26560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS26560
old locus tag: Pnap_4760
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAMRLAGMPGLPREAGRIRSNTHALFGGVGFFSFFAQLRALPPPETPFVRKPRFWNRIGSMPRKNPSRNSSSARRRRVGVRRTHQGYRILTPNGTEGLVAHGISLKAIHGLMKKLRRHMTPADSLARADEPPAGS
SIO_010081: PNAP_RS26560
subclass of: SO_0000673
so part of: PNAP_RS26560
location: 1158..1565
location: region:1158-1565:1
so has part: feature:1158-1565:1:exon

WP_011798537.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1158-1565:1:exon

PNAP_RS24370
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24370
old locus tag: Pnap_4761
so part of: sequence
location: complement(1583..2455)
location: region:1583-2455:-1
so has part: feature:1583-2455:-1:exon
subclass of: SO_0000010

position:1583:-1
position: 1583
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2455:-1
position: 2455
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1583-2455:-1:exon

PNAP_RS24370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24370
old locus tag: Pnap_4761
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011798595.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA-binding protein
translation: MAIVNFESVATAAESLQAAGQRASVRAVIAALGGGSPNSVLKLLGEWKSGRPVVRIADTELDARITDAIRLQMQRVGEQAAAAAEERASGLDEDLQALAEAQAAAEKQIAGLTAERDTAQAQAARLALQLQEAQAEAERAAGQSAEALAAAGQALARAEVRLEAVPALQAEAERLRAALEANQQARQQAEQSAAVLDARLEAAERRASEAEGRTLKADARADALAGDLAGVHAALQACQARLETAARELGAAEAAARKLAEEAAGRATAGRVTAVAAWRAGDGREGQEKR
SIO_010081: PNAP_RS24370
subclass of: SO_0000673
so part of: PNAP_RS24370
location: complement(1583..2455)
location: region:1583-2455:-1
so has part: feature:1583-2455:-1:exon

WP_011798538.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1583-2455:-1:exon

PNAP_RS24375
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24375
old locus tag: Pnap_4762
so part of: sequence
location: 3682..3879
location: region:3682-3879:1
so has part: feature:3682-3879:1:exon
subclass of: SO_0000010

position:3682:1
position: 3682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3879:1
position: 3879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3682-3879:1:exon

PNAP_RS24375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24375
old locus tag: Pnap_4762
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKLTREILMQYRRPKGMWTRAQLQALGVSWPPKHGWIKEVIGKELTEQQFDQFTGKNPAQGGLFD
SIO_010081: PNAP_RS24375
subclass of: SO_0000673
so part of: PNAP_RS24375
location: 3682..3879
location: region:3682-3879:1
so has part: feature:3682-3879:1:exon

WP_011798539.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3682-3879:1:exon

PNAP_RS24380
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24380
old locus tag: Pnap_4763
so part of: sequence
location: complement(4046..4576)
location: region:4046-4576:-1
so has part: feature:4046-4576:-1:exon
subclass of: SO_0000010

position:4046:-1
position: 4046
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4576:-1
position: 4576
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4046-4576:-1:exon

PNAP_RS24380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24380
old locus tag: Pnap_4763
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003159187.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNEFRRLAARIDQHMQQLGAQGVNDPHAIIHRMMGYTPDLHKIWVGTSDQQLMALSSEFPGFYRYALIMEEASEAERNKAARPYDGVAEFSDEHKQQAAQLLVTAATLERGYQAFRGSGNLQVFQQQVNELGRLHRQWLADLDSFKDSLRDAQPKALEYVNGAFGHLVERIKQLAG
SIO_010081: PNAP_RS24380
subclass of: SO_0000673
so part of: PNAP_RS24380
location: complement(4046..4576)
location: region:4046-4576:-1
so has part: feature:4046-4576:-1:exon

WP_041377825.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4046-4576:-1:exon

PNAP_RS24385
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24385
old locus tag: Pnap_4764
so part of: sequence
location: complement(4584..5000)
location: region:4584-5000:-1
so has part: feature:4584-5000:-1:exon
subclass of: SO_0000010

position:4584:-1
position: 4584
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5000:-1
position: 5000
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4584-5000:-1:exon

PNAP_RS24385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24385
old locus tag: Pnap_4764
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016805103.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system VapC family toxin
translation: MIVLDTNVVSEAMKPEPHPAVRAWLNAQAAPTLYLSSVTLAELLFGIAALPAGKRRDMLAKALDGLLGLFRDRVLPFDTDAARRYAELAVMARTGGRGFPTPDGYIAAIAASRGFIVASRDTAPFQAAGVPIINPWEA
SIO_010081: PNAP_RS24385
subclass of: SO_0000673
so part of: PNAP_RS24385
location: complement(4584..5000)
location: region:4584-5000:-1
so has part: feature:4584-5000:-1:exon

WP_011798541.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4584-5000:-1:exon

PNAP_RS24390
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24390
old locus tag: Pnap_4765
so part of: sequence
location: complement(4997..5251)
location: region:4997-5251:-1
so has part: feature:4997-5251:-1:exon
subclass of: SO_0000010

position:4997:-1
position: 4997
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5251:-1
position: 5251
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4997-5251:-1:exon

PNAP_RS24390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24390
old locus tag: Pnap_4765
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006706572.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid stabilization protein
translation: MAMLTVRNLPDDVHRALRVQAALHGRSTEAEVREILALAVKPEARVRLGEALAALSRNIGLTNEDFEVFDRVSDRAPAMPLGFE
SIO_010081: PNAP_RS24390
subclass of: SO_0000673
so part of: PNAP_RS24390
location: complement(4997..5251)
location: region:4997-5251:-1
so has part: feature:4997-5251:-1:exon

WP_011798542.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4997-5251:-1:exon

PNAP_RS24395
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24395
old locus tag: Pnap_4766
so part of: sequence
location: 5469..5756
location: region:5469-5756:1
so has part: feature:5469-5756:1:exon
subclass of: SO_0000010

position:5469:1
position: 5469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5756:1
position: 5756
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5469-5756:1:exon

PNAP_RS24395
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24395
old locus tag: Pnap_4766
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011802198.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRFYLFQPQTERHIRKSLEYLEEAKVSRVEHQVAAEHHRALTAMYAQRISRIEAEISDALQASSKSSLPVQAADNESVRPKSDSVVIYPSRASHA
SIO_010081: PNAP_RS24395
subclass of: SO_0000673
so part of: PNAP_RS24395
location: 5469..5756
location: region:5469-5756:1
so has part: feature:5469-5756:1:exon

WP_049763857.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5469-5756:1:exon

PNAP_RS24400
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24400
old locus tag: Pnap_4767
so part of: sequence
location: complement(5856..6098)
location: region:5856-6098:-1
so has part: feature:5856-6098:-1:exon
subclass of: SO_0000010

position:5856:-1
position: 5856
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6098:-1
position: 6098
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5856-6098:-1:exon

PNAP_RS24400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24400
old locus tag: Pnap_4767
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011798502.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tail fiber protein
translation: MEPFIGQIELLAFNFAPQGWALCDGALLPISQNTALFSLLGTTYGGDGVTTFALPNLKGKEPVDGSHYCIALMGIYPSRP
SIO_010081: PNAP_RS24400
subclass of: SO_0000673
so part of: PNAP_RS24400
location: complement(5856..6098)
location: region:5856-6098:-1
so has part: feature:5856-6098:-1:exon

WP_011798544.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5856-6098:-1:exon

PNAP_RS26565
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS26565
old locus tag: Pnap_4768
so part of: sequence
location: 6621..7325
location: region:6621-7325:1
so has part: feature:6621-7325:1:exon
subclass of: SO_0000010

position:6621:1
position: 6621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7325:1
position: 7325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6621-7325:1:exon

PNAP_RS26565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS26565
old locus tag: Pnap_4768
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005706405.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSSDNVNALPDFFNEIMEGIGRAEHEADQKNGRTDSIKAASQSLVRIKEKHGLGRENRILNNLILIFEEKEAPTKGLFKGCRTPISKGARVLQALNRIKVSDEPATIKEAFANIGSSCVDLAKEVGNSTKNFVADHPIATAVAMGVVTGGVAFAAAGPIAAVVGSTGALGAASTGTAIGTLKGAALTSASLAKLGGGAIVAGGTGMTGGTVTVAAAGVSAGAVGGSAASKAADC
SIO_010081: PNAP_RS26565
subclass of: SO_0000673
so part of: PNAP_RS26565
location: 6621..7325
location: region:6621-7325:1
so has part: feature:6621-7325:1:exon

WP_011798545.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6621-7325:1:exon

PNAP_RS24405
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24405
old locus tag: Pnap_4769
pseudo: true
so part of: sequence
location: <7355..7567
location: region:7355-7567:1
so has part: feature:7355-7567:1:exon
subclass of: SO_0000010

position:7355:1
position: 7355
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:7567:1
position: 7567
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7355-7567:1:exon

PNAP_RS24405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24405
old locus tag: Pnap_4769
inference: COORDINATES: similar to AA sequence:RefSeq:NP_490533.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: phosphoribulokinase
SIO_010081: PNAP_RS24405
subclass of: SO_0000673
so part of: PNAP_RS24405
location: <7355..7567
location: region:7355-7567:1
so has part: feature:7355-7567:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7355-7567:1:exon

PNAP_RS24410
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24410
old locus tag: Pnap_4770
pseudo: true
so part of: sequence
location: <7765..8313
location: region:7765-8313:1
so has part: feature:7765-8313:1:exon
subclass of: SO_0000010

position:7765:1
position: 7765
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:8313:1
position: 8313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7765-8313:1:exon

PNAP_RS24410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24410
old locus tag: Pnap_4770
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015060658.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: Tn3 family transposase
SIO_010081: PNAP_RS24410
subclass of: SO_0000673
so part of: PNAP_RS24410
location: <7765..8313
location: region:7765-8313:1
so has part: feature:7765-8313:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7765-8313:1:exon

PNAP_RS24415
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24415
old locus tag: Pnap_4771
so part of: sequence
location: complement(8670..9197)
location: region:8670-9197:-1
so has part: feature:8670-9197:-1:exon
subclass of: SO_0000010

position:8670:-1
position: 8670
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9197:-1
position: 9197
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8670-9197:-1:exon

PNAP_RS24415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24415
old locus tag: Pnap_4771
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSTKTNELAVIDPAPAEAPMSHFNNFMAMGLQAFQQVVPESSKPAPLRHVQTIVNLSNQWAARNANNSAISAGLLPHAMDADTWKELLAMQAAVLQRLQDQQKSWVAGVTSLAQDYAQIKQAKTMSKYAEQQFNLIAQFGQLVSAQATALMGLQENIQVDYGYWAAQKQQGAGQV
SIO_010081: PNAP_RS24415
subclass of: SO_0000673
so part of: PNAP_RS24415
location: complement(8670..9197)
location: region:8670-9197:-1
so has part: feature:8670-9197:-1:exon

WP_011798548.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8670-9197:-1:exon

PNAP_RS24420
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24420
old locus tag: Pnap_4772
so part of: sequence
location: complement(9239..10213)
location: region:9239-10213:-1
so has part: feature:9239-10213:-1:exon
subclass of: SO_0000010

position:9239:-1
position: 9239
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10213:-1
position: 10213
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9239-10213:-1:exon

PNAP_RS24420
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24420
old locus tag: Pnap_4772
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012330642.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: poly(3-hydroxybutyrate) depolymerase
translation: MTVQLHLAYSSSFSGVGVIAGGPFRCVESFSPAATLPEDAYVQNALYICMNPLVPQTGPSAHKLAQLARETATAGEIDAIDHLADDRVYIFTGSEDKVVFSDVVSRTRNFYELLGVKPANLVYHDDVPAGHSIITDNPEDSPLATNQPPYINQGGFMQSHDILRHIYGQLNPPVEQLTGRLVRFDQTEFFGGEPRASMSKFGYAYIPKAVEEGTAEARVHIALHGCKQGYNYTDYVYGRADIANQPPYGNRYITTTGYNHIADSNDIIMLYPQAEGADGNAAQNPEGCWDWWGYTSPTPKRPDYYSREAIQIKAIHDMLARLGG
SIO_010081: PNAP_RS24420
subclass of: SO_0000673
so part of: PNAP_RS24420
location: complement(9239..10213)
location: region:9239-10213:-1
so has part: feature:9239-10213:-1:exon

WP_232290876.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9239-10213:-1:exon

PNAP_RS24430
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24430
pseudo: true
so part of: sequence
location: <10846..>11022
location: region:10846-11022:1
so has part: feature:10846-11022:1:exon
subclass of: SO_0000010

position:10846:1
position: 10846
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:11022:1
position: 11022
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10846-11022:1:exon

PNAP_RS24430
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24430
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005372628.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: recombinase family protein
SIO_010081: PNAP_RS24430
subclass of: SO_0000673
so part of: PNAP_RS24430
location: <10846..>11022
location: region:10846-11022:1
so has part: feature:10846-11022:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10846-11022:1:exon

PNAP_RS26570
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
gene: trfA
locus tag: PNAP_RS26570
old locus tag: Pnap_4774
so part of: sequence
location: complement(11708..12745)
location: region:11708-12745:-1
so has part: feature:11708-12745:-1:exon
subclass of: SO_0000010

position:11708:-1
position: 11708
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12745:-1
position: 12745
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11708-12745:-1:exon

PNAP_RS26570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
gene: trfA
locus tag: PNAP_RS26570
old locus tag: Pnap_4774
inference: COORDINATES: protein motif:HMM:NF018714.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid replication initiator TrfA
translation: MDQKLTTKRGQEAWVKRAIKTGMTEAEARAVVQKMAAAIDEGKSAPKPQKPFSLPNKAKRNPAKVGDLFADPPLPSSEIKPVLSTQLTVEISQLPLWPEVMRSLPNEILRSALFNARNRKNPRSMMKSEPVAVIGDGRISYRGEELRQDDETVWLQLVHLARRHVAGQLVEFTAYSFCKDIDWSINSKSYLRLKECLRRMQATSLDVYSKRLERGVSLSMIPFFEYEDSETQKTLQRWRVRIAPELVELFGDNYFTRLEWAQRLQLPDGLATWLHGYLATHRVPHPIKIETIAFGAGLTETSKPELRRLVKRALTNLVNCGFLTEFDVNEDLVTVKRTNNKSSER
SIO_010081: PNAP_RS26570
subclass of: SO_0000673
so part of: PNAP_RS26570
location: complement(11708..12745)
location: region:11708-12745:-1
so has part: feature:11708-12745:-1:exon

WP_011798551.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11708-12745:-1:exon

PNAP_RS26575
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS26575
old locus tag: Pnap_4775
so part of: sequence
location: complement(12820..13128)
location: region:12820-13128:-1
so has part: feature:12820-13128:-1:exon
subclass of: SO_0000010

position:12820:-1
position: 12820
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13128:-1
position: 13128
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12820-13128:-1:exon

PNAP_RS26575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS26575
old locus tag: Pnap_4775
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010617320.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKAKPNTDQFRLKKDPSAFLEGGAADTADRTEITQPAAETPKGPAAQPVVEAKVHREQKIFRLPLDLINELKREAYERSVKTGFRVTETELVEQSLRAFLRR
SIO_010081: PNAP_RS26575
subclass of: SO_0000673
so part of: PNAP_RS26575
location: complement(12820..13128)
location: region:12820-13128:-1
so has part: feature:12820-13128:-1:exon

WP_011798552.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12820-13128:-1:exon

PNAP_RS24435
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24435
old locus tag: Pnap_4776
so part of: sequence
location: complement(13125..13754)
location: region:13125-13754:-1
so has part: feature:13125-13754:-1:exon
subclass of: SO_0000010

position:13125:-1
position: 13125
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13754:-1
position: 13754
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13125-13754:-1:exon

PNAP_RS24435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24435
old locus tag: Pnap_4776
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005918230.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MIYAIVNTKGGVGKTTTAVHLATMLARLGETLLIDGDPQASAASWAAWRRDNSSHGPSPTTTCLTGKAILSEGKQLAAKYEHVVVDAGGRDSVGLRSALLLAKMAIVPIGASSLDAAAMTDLLEVVELSRDYNPELDVRVLLTRVDPRTKDAAEMLKFLAEQNLTVLPTKICERVAFRRAIGEGVIVQELGKDQAAIAEIEAFFREVQA
SIO_010081: PNAP_RS24435
subclass of: SO_0000673
so part of: PNAP_RS24435
location: complement(13125..13754)
location: region:13125-13754:-1
so has part: feature:13125-13754:-1:exon

WP_011798553.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13125-13754:-1:exon

PNAP_RS24440
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24440
old locus tag: Pnap_4777
so part of: sequence
location: 14048..15601
location: region:14048-15601:1
so has part: feature:14048-15601:1:exon
subclass of: SO_0000010

position:14048:1
position: 14048
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15601:1
position: 15601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14048-15601:1:exon

PNAP_RS24440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24440
old locus tag: Pnap_4777
EC number: 2.1.1.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020485772.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: class I SAM-dependent DNA methyltransferase
translation: MLDDIKKTLWATADKLRANMDAAEYKHLVLGLIFVKYISDTFAARRAELTARLTNPADAYYYGDAAPEDIEAELEDRDYYKEVNAFWVPEAARWESLRAAAKQVDIGKRIDDALSLIEAENPTLKGILDKRYARAQLPDGKLGELVDLISTIGFGDNPSTARDVLGQVYEYFLGMFASAEGKRGGQFYTPASIVKTLVAILGPHSGKVYDPCCGSGGMFVQSEKFIEAHGGKLGDVSIYGQEANPTTWRLAAMNLAIRGIDFNLGKEPGDTFTRNQHPDLRADFILANPPFNISDWWHGSLMGDARWVHGDPPPGNANYAWLQHMLHHLKPTGRAGIVLANGSMSSSQNSEGQIRAAMVEADVVEVMVALPGQLFFNTQIPACLWFLVKQKTHRKGEVLFIDARKLATMISRVQSEFTDAVIERIAATVAAWRGEADAGEYRDTLGFCRSVKLAEIAQHGHVLTPGRYVGAEAVEDNDEDFATKMQQLTEKLGEQMARGAELDLLIRQKLGGLGYEF
SIO_010081: PNAP_RS24440
subclass of: SO_0000673
so part of: PNAP_RS24440
location: 14048..15601
location: region:14048-15601:1
so has part: feature:14048-15601:1:exon

WP_011798554.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14048-15601:1:exon

PNAP_RS24445
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24445
old locus tag: Pnap_4778
so part of: sequence
location: 15591..16838
location: region:15591-16838:1
so has part: feature:15591-16838:1:exon
subclass of: SO_0000010

position:15591:1
position: 15591
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16838:1
position: 16838
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15591-16838:1:exon

PNAP_RS24445
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24445
old locus tag: Pnap_4778
EC number: 3.1.21.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004137257.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006304 - DNA modification [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: restriction endonuclease subunit S
translation: MSSEWQFGKLGDFIELKRGYDLPQAKRTSGPFPLVSSSGVSDCHSVPMVRGPGVVTGRYGTIGQVYFVEDDFWPLNTTLYVRDFKGNDPKFISYFLKTVDFFAYSDKAAVPGVNRNHLHEALGAIPDLPTQQEIARTLGVLDDRIALLRETNATLEAIAQALFKSWFVDFDPVRARMEGRAPEGMDEATAALFPDGFEDSELGLVPKGWATRTMADISTVGIGKTPPRKEQHWFSEDPSDVRWVSIRDMGAVGVYAAVTSEFLKKEAIEKFNIRRVPDNTVLMSFKMTIGRVAITDGEMTTNEAIAHFKLAPDAQLSTEYIYLHLKQFDFSTLSSTSSIADAVNSKTVREIPILMPSLEGLTAFQSQVAALFAKLKNTEQHAQTLVTLRDTLLPRLISGQLRLPEAEALLEEACA
SIO_010081: PNAP_RS24445
subclass of: SO_0000673
so part of: PNAP_RS24445
location: 15591..16838
location: region:15591-16838:1
so has part: feature:15591-16838:1:exon

WP_011798555.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15591-16838:1:exon

PNAP_RS24450
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24450
old locus tag: Pnap_4779
so part of: sequence
location: 16835..17920
location: region:16835-17920:1
so has part: feature:16835-17920:1:exon
subclass of: SO_0000010

position:16835:1
position: 16835
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17920:1
position: 17920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16835-17920:1:exon

PNAP_RS24450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24450
old locus tag: Pnap_4779
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010676161.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PDDEXK nuclease domain-containing protein
translation: MKPASNTPLSLPEGYADWLAQLKGQIVQARQRAALAVNAELVQLYGRIGRDILQRQQTQGWGTKVIDRLARDLKDGFPDMRGWSPSNLKYMRFFAQHCPDGQFGQQPADQLPWFHVVTLLTQLDNAADREWYAAQTVQHGWSRTTLALHIKNRLQQRQGGAVTNFQARLPAAESALARETLKDPYLFDFLGLGDDAHEREIENGLIRHITRFLLELGAGFAFVGRQFRLEVAGDEFFIDLLFYHTRLKCYVVVELKATAFKPEHAGQLNFYLAAVDAQVKAPDDKPTIGLLLCKQQNRLVAEYALSGIDKPIGVAEYQLLRDLPATLEQSLPSIADIEAELSSDVGALQALDAPDEPSDQP
SIO_010081: PNAP_RS24450
subclass of: SO_0000673
so part of: PNAP_RS24450
location: 16835..17920
location: region:16835-17920:1
so has part: feature:16835-17920:1:exon

WP_011798556.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16835-17920:1:exon

PNAP_RS24455
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24455
old locus tag: Pnap_4780
so part of: sequence
location: 18022..18414
location: region:18022-18414:1
so has part: feature:18022-18414:1:exon
subclass of: SO_0000010

position:18022:1
position: 18022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18414:1
position: 18414
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18022-18414:1:exon

PNAP_RS24455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24455
old locus tag: Pnap_4780
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017839940.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: lysozyme inhibitor LprI family protein
translation: MKTLKRFSAALAIAAASHAASAHETGLSKQHAACMDKSGGVTMGMIECITAENHRQDALLNKAYKALMAELPPPRKTQLQEAQRAWIKYRDANCAFYDDPDGGTLARVNANSCMMAATADRARELESFRQ
SIO_010081: PNAP_RS24455
subclass of: SO_0000673
so part of: PNAP_RS24455
location: 18022..18414
location: region:18022-18414:1
so has part: feature:18022-18414:1:exon

WP_041377816.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18022-18414:1:exon

PNAP_RS25370
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS25370
old locus tag: Pnap_4781
so part of: sequence
location: 18431..19348
location: region:18431-19348:1
so has part: feature:18431-19348:1:exon
subclass of: SO_0000010

position:18431:1
position: 18431
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19348:1
position: 19348
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18431-19348:1:exon

PNAP_RS25370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS25370
old locus tag: Pnap_4781
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKPTLSTGGHLPNAGTGLENGFEIPTPISMVPLTDPVARRAGRLLSMVHELHKAGYQRLRICAGYSPDNAEWRCHLLTTNNMRGDGWTPVSTATAHEYSSINASRYFGWDDAQTDDARRLAAKFIDRFPETAQAAVGDDWTYAGWFILILGRAENGRLPAFYGGLDFEPPAPATPLPPGLEMSERINDGEAEQKIIAHEDLTLADLPPRNANYERLWPFCLSFDGYRGGLRSVEDCESIASLTERMGLKNATLERLRVTAFIRQRAIKWGDPLPPSENLLNAIREVVEEIRQRLDPALHRPNKLT
SIO_010081: PNAP_RS25370
subclass of: SO_0000673
so part of: PNAP_RS25370
location: 18431..19348
location: region:18431-19348:1
so has part: feature:18431-19348:1:exon

WP_049763856.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18431-19348:1:exon

PNAP_RS24465
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24465
old locus tag: Pnap_4782
so part of: sequence
location: 19345..22434
location: region:19345-22434:1
so has part: feature:19345-22434:1:exon
subclass of: SO_0000010

position:19345:1
position: 19345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22434:1
position: 22434
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19345-22434:1:exon

PNAP_RS24465
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24465
old locus tag: Pnap_4782
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011482874.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type I restriction endonuclease subunit R
translation: MTEDQLEQETLAWLQDVGYTCHCGYDIAPDGPAPERSSFSQALLPFRLREAIHKLNPGIPTPAREDAFKQVLDLGIPALLSANRHFHKLLVGGVPVEYQKDGQTRGDFVRLIDWAQPARNEFLAVNQFSLKGAHHTRRPDIILFVNGLPLVLLELKNPADLNANVWKAYDQIQTYKAQIPGVFEYNEVLVISDGTEALLGSLSSSSERFMAWRTIDGQALDPLGQFNELQTLVRGVLAPAYLLDYLRYFVLFEDDGQLAKKIAGYHQFHAVRSAITQVVTASRPGGTHKGGVVWHTQGSGKSITMTCFAARVMQEPAMENPTIVVITDRNDLDGQLFGVFSLAQDLLREQPVQVSTRQDLRTRLANRPSGGIVFATIQKFMPGEDEDTFPTLSERHNIVVIADEAHRTQYGFEAKLKGKPGHETYQVGYAQHLRDALPNATFVAFTGTPVSSEDRDTRAVFGDYISVYDMQQAKEDGATVAIYYESRLAKLKLKEEDFSLIDEEVDELAEDEEESTQAKLKSRWAALEKVVGAEPRVASVAADLVAHFEERNKAQSGKAMTVAMSRDICVHLYNEIVKLRPDWHDPDPEKGAIKIVMTGSSSDKALLRPHIYSAQVKKRLEKRFKDPADPLRLVIVRDMWLTGFDAPCVHTLYVDKPMKGHNLMQAIARVNRVFKDKQGGLVVDYIGIGNELKAAMKEYTQSKGRGRPTVDAHEAYSVLAEKLDILQTMLHGYDYSGFLTGGHKALAGAANHVLGAQDGKKRFADTALQMSKAFSLCCTLDEAKAVREEVAFLQGVKVILTKKDLSAQKKTDEQRDLAIRQIINSAVVSDSVVDIFDAVGLDKPNIGLLSDEFLAQVKNLPEKNLAVELLERLLEGEIKSRFASNVVQEKKFSELLAGVIKRYQNRSIETAQVMEELVAMARKFQEAANRGEALGLTEDEIKFYDALATNESAVRELTDETLKKIAHELTENLRQNLSVDWSERESVRARLRLMVRRILRKYKYPPDLQDAAVELVLQQAQALGTVWMI
SIO_010081: PNAP_RS24465
subclass of: SO_0000673
so part of: PNAP_RS24465
location: 19345..22434
location: region:19345-22434:1
so has part: feature:19345-22434:1:exon

WP_011798559.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19345-22434:1:exon

PNAP_RS24470
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24470
old locus tag: Pnap_4783
so part of: sequence
location: complement(22591..23646)
location: region:22591-23646:-1
so has part: feature:22591-23646:-1:exon
subclass of: SO_0000010

position:22591:-1
position: 22591
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23646:-1
position: 23646
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22591-23646:-1:exon

PNAP_RS24470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24470
old locus tag: Pnap_4783
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQLPNFRDILYRLTSQATHQALQNSANTDDATYRFPVVVRSQTRAFLEAQATALGASMAGLSGSILDSVAASQIEAVAYSSEGITSRFYLLLKEHGLSLPAAAEVLRELRITAGDMSAPAVLLEKLTVQNIEWISNHFGVSYEWLAGSSDNAIPFRHGTWYKSQIAGAHRLVELSQGADSVNFCLVRRAGFEYENDSAKTYEASRPNAAEPEFYPVVRTWHRAGPQEEYETFEAWDVGRWNYWRCREHIKIVVYFATHLARLPSLDIRVSGLTLDPKTFASLSEGKILLPTIFRSSGAIQWHPDDFVEPSSHVAKDPAEWRRILSSADYASDFKAFSGLLQSLEKAKNLEN
SIO_010081: PNAP_RS24470
subclass of: SO_0000673
so part of: PNAP_RS24470
location: complement(22591..23646)
location: region:22591-23646:-1
so has part: feature:22591-23646:-1:exon

WP_011798560.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22591-23646:-1:exon

PNAP_RS26580
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS26580
old locus tag: Pnap_4784
so part of: sequence
location: complement(23770..24048)
location: region:23770-24048:-1
so has part: feature:23770-24048:-1:exon
subclass of: SO_0000010

position:23770:-1
position: 23770
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24048:-1
position: 24048
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23770-24048:-1:exon

PNAP_RS26580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS26580
old locus tag: Pnap_4784
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002244538.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKINFAHIRERSTSGGWINFAVFEANSTSGSDSANAQVLADLTNKTQLAGYKIDQSALAFMRQGRLTFYGTKNLVDYLSKQRLPSWTHSITV
SIO_010081: PNAP_RS26580
subclass of: SO_0000673
so part of: PNAP_RS26580
location: complement(23770..24048)
location: region:23770-24048:-1
so has part: feature:23770-24048:-1:exon

WP_011798561.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23770-24048:-1:exon

PNAP_RS24475
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24475
old locus tag: Pnap_4785
so part of: sequence
location: complement(24090..24344)
location: region:24090-24344:-1
so has part: feature:24090-24344:-1:exon
subclass of: SO_0000010

position:24090:-1
position: 24090
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24344:-1
position: 24344
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24090-24344:-1:exon

PNAP_RS24475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24475
old locus tag: Pnap_4785
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIDIKFEIGGRRVDPRNMRDALEGAMLSAVQDGLRKKVGSCRCPDHGQAPKLLGKGRSLDKLNFEVTGCCEKVIEEVKRKLGSN
SIO_010081: PNAP_RS24475
subclass of: SO_0000673
so part of: PNAP_RS24475
location: complement(24090..24344)
location: region:24090-24344:-1
so has part: feature:24090-24344:-1:exon

WP_011798562.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24090-24344:-1:exon

PNAP_RS26585
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS26585
old locus tag: Pnap_4786
so part of: sequence
location: complement(24402..24638)
location: region:24402-24638:-1
so has part: feature:24402-24638:-1:exon
subclass of: SO_0000010

position:24402:-1
position: 24402
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24638:-1
position: 24638
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24402-24638:-1:exon

PNAP_RS26585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS26585
old locus tag: Pnap_4786
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009225543.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2188 domain-containing protein
translation: MKYASTKRNQHVVPHQDGWAVRGAGAERATETFDRKTDAVQRGREISQNQGTELVIHGRDGQIQSKDSHGHDPFPPKG
SIO_010081: PNAP_RS26585
subclass of: SO_0000673
so part of: PNAP_RS26585
location: complement(24402..24638)
location: region:24402-24638:-1
so has part: feature:24402-24638:-1:exon

WP_157040567.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24402-24638:-1:exon

PNAP_RS24485
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
gene: istB
locus tag: PNAP_RS24485
old locus tag: Pnap_4787
so part of: sequence
location: complement(24931..25662)
location: region:24931-25662:-1
so has part: feature:24931-25662:-1:exon
subclass of: SO_0000010

position:24931:-1
position: 24931
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25662:-1
position: 25662
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24931-25662:-1:exon

PNAP_RS24485
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
gene: istB
locus tag: PNAP_RS24485
old locus tag: Pnap_4787
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011482869.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS21-like element helper ATPase IstB
translation: MNEQTLTQLRSLRLDGMVRAIEEQATSIAVSALGFDERFSLLVQREVAWRDERRVERLLKAAKLKVSSACVEDINWRASRALDRALVTALAGGDWLRNAQNLLITGATGCGKTWLACALAHQAARLGFSVLYVRAGRLFDELHVAHGDGSLNRRMSQLAKLDLLVIDDFAISPMGAPERNDLLEVLDDRVGTRSTLITSQLPVKAWHTYLDDPTLADAILDRVVHSSHRIDLKGATLRDPNTN
SIO_010081: PNAP_RS24485
subclass of: SO_0000673
so part of: PNAP_RS24485
location: complement(24931..25662)
location: region:24931-25662:-1
so has part: feature:24931-25662:-1:exon

WP_011797944.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24931-25662:-1:exon

PNAP_RS24490
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
gene: istA
locus tag: PNAP_RS24490
old locus tag: Pnap_4788
so part of: sequence
location: complement(25704..27242)
location: region:25704-27242:-1
so has part: feature:25704-27242:-1:exon
subclass of: SO_0000010

position:25704:-1
position: 25704
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27242:-1
position: 27242
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25704-27242:-1:exon

PNAP_RS24490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
gene: istA
locus tag: PNAP_RS24490
old locus tag: Pnap_4788
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011235906.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS21 family transposase
translation: MPTNRITMRQIRESLRLHLQANLSYNEVGRNLKISKSVVGKYMSLARVAGVDWSVAQTLSDQELEAKLYKAALPRNSKQALPDFAQIHTELKRAGVTLQLLWEEYAKGNDLAFKYTSFCVKYREWAMGLKRSMRQTHIAGEKLFVDYAGQTVPLIDAGTGEITKAQIFVATLGASNYTFACATARQTTADWIGAQVLALEYFGGVPRLIVPDQTRSLIKNPCSYDPQNNRLYEEFAAHYGCALLAARPAHPRDKPKVENAVLVVERWILARLRNRKFFSLMELNHAIALLLNDLNQRAFKKLPGNRRSAFEQLDAPALRPLPAKRFELFRWKSAKVNVDYHVEFDGHYYSVPHTLVRTTVELRASDTLLECYSSNQRVACHAVSPKRGAHTTTPEHMPASHRAHLEWTPQKLIDWGLRIGVSTAAVVTWQLEHRAHPEQGYRACLGLQRLAREFTPARLEAACTRALAIRSLTYRSVASILKTGLDRQQNLPTMTPGALPAHDNIRGADYFH
SIO_010081: PNAP_RS24490
subclass of: SO_0000673
so part of: PNAP_RS24490
location: complement(25704..27242)
location: region:25704-27242:-1
so has part: feature:25704-27242:-1:exon

WP_011797945.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25704-27242:-1:exon

PNAP_RS24495
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24495
old locus tag: Pnap_4789
so part of: sequence
location: 27575..28204
location: region:27575-28204:1
so has part: feature:27575-28204:1:exon
subclass of: SO_0000010

position:27575:1
position: 27575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28204:1
position: 28204
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27575-28204:1:exon

PNAP_RS24495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24495
old locus tag: Pnap_4789
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKLDDQPDNNATPEDVHQAIEALSNEDRYRLRKASMICLAGTEYQDPMELVHEAMVRTMSAANGGKGRHWPKDVPFMAYMIQTLKGLADDSRQSAAQKKTDHLEVMAAEGATVEEALGRFGYCHSDVLSQAVEWEESENRQDRAKTDALLIDARFADDNEVTLIIMGHKDGLTPAEIRELGEMNQTQYETARRRLRRGLENLFPGRRAQ
SIO_010081: PNAP_RS24495
subclass of: SO_0000673
so part of: PNAP_RS24495
location: 27575..28204
location: region:27575-28204:1
so has part: feature:27575-28204:1:exon

WP_157040563.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27575-28204:1:exon

PNAP_RS24500
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24500
old locus tag: Pnap_4790
so part of: sequence
location: 28201..28617
location: region:28201-28617:1
so has part: feature:28201-28617:1:exon
subclass of: SO_0000010

position:28201:1
position: 28201
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28617:1
position: 28617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28201-28617:1:exon

PNAP_RS24500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24500
old locus tag: Pnap_4790
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNTQKTRAEMAALRDAALEDLMATSDVQLRQEALEDGDDLAKVAMQVKTTMREAVASAQRQRLARAKERMRPSASARPFSSLHLSVEAIKQLVHGIFQTDPSLGLAFRDGKKQTEADWRSLYDDLVSMGAIKPEDYGR
SIO_010081: PNAP_RS24500
subclass of: SO_0000673
so part of: PNAP_RS24500
location: 28201..28617
location: region:28201-28617:1
so has part: feature:28201-28617:1:exon

WP_011798565.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28201-28617:1:exon

PNAP_RS24505
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24505
old locus tag: Pnap_4791
so part of: sequence
location: 28607..29371
location: region:28607-29371:1
so has part: feature:28607-29371:1:exon
subclass of: SO_0000010

position:28607:1
position: 28607
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29371:1
position: 29371
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28607-29371:1:exon

PNAP_RS24505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24505
old locus tag: Pnap_4791
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019576032.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ImmA/IrrE family metallo-endopeptidase
translation: MDVDLSRLSSAERLLWGYGVTDSSHIDLDAIANDNGAEVKYRPLGGCEARLVARGENAIISVNSASNDGRQRFSLAHELAHWICDRKTGSFLCAKEDIGPQNAIARSVEADANSYASQLILPTYLVEPWMKDRKVNLDVASLLAKDFNASLTAAAIKLVKQATVPAFVVCHNQTRLAWHQRSPACSPEFYVTSELHQDTDAFRMAFGGVMGMSKSKRESASRWISGRDVFRLEVNSQSIKLPDATVLTIITLFK
SIO_010081: PNAP_RS24505
subclass of: SO_0000673
so part of: PNAP_RS24505
location: 28607..29371
location: region:28607-29371:1
so has part: feature:28607-29371:1:exon

WP_011798566.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28607-29371:1:exon

PNAP_RS24510
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24510
old locus tag: Pnap_4792
so part of: sequence
location: complement(29627..30814)
location: region:29627-30814:-1
so has part: feature:29627-30814:-1:exon
subclass of: SO_0000010

position:29627:-1
position: 29627
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:30814:-1
position: 30814
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29627-30814:-1:exon

PNAP_RS24510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24510
old locus tag: Pnap_4792
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011399987.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: XRE family transcriptional regulator
translation: MFNPKRFSLARRRRGMTKREIAESIGVSERSVSAYEKGDQEPEPSNVQRMTKALNFPEAFFHAADPEELTMGIASFRSMSKMSARQRDSALGSGSIGLLLNEWLEKKFNLPEPNLPDLGRESGVLTGLSSRESYEDDIPFPSKSTANAPEAAAEAFRSHWGLGELPVKNMITLLESKGVRVFSLAIDAKEVDAFSMWHGGKPFMFLNTFKSAEHCRFDAAHELGHLVLHRHGQTQGPELEREANAFASAFLMPRKSVLSNAPRVATLPGLVRAKHYWKVSVAALNYRLHALGMTSDWVYRTLCIQLAEAGYRTKEPEEATHEKSLILEKVFKALRDEGVSKFDVADELLIPIEEINALTFNLMLNLLSGGRKGSDPATEKGRGAIRLVHVSDASI
SIO_010081: PNAP_RS24510
subclass of: SO_0000673
so part of: PNAP_RS24510
location: complement(29627..30814)
location: region:29627-30814:-1
so has part: feature:29627-30814:-1:exon

WP_011798567.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29627-30814:-1:exon

PNAP_RS24515
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24515
old locus tag: Pnap_4793
so part of: sequence
location: complement(30822..31463)
location: region:30822-31463:-1
so has part: feature:30822-31463:-1:exon
subclass of: SO_0000010

position:30822:-1
position: 30822
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31463:-1
position: 31463
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30822-31463:-1:exon

PNAP_RS24515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24515
old locus tag: Pnap_4793
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020067293.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLETIIFAEPENADARLAELQLSRQVLIDSPVQANMYLARMTSHHPRLYRYGVMTGETVAALRDFLVPHGWEVRNEGNYELVFNPKLNMGIAVASGNEGTGDRLRIPSNKSEKGPRTAKAVKDNQTADLFPETMPTAPEGIVATDTWILLHHRCGNEIRLELSRPNGFDVTERFVTGWSERILLGTISLDNDPMPMPMPQLPEDDIVVTRKAA
SIO_010081: PNAP_RS24515
subclass of: SO_0000673
so part of: PNAP_RS24515
location: complement(30822..31463)
location: region:30822-31463:-1
so has part: feature:30822-31463:-1:exon

WP_011798568.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30822-31463:-1:exon

PNAP_RS24520
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24520
old locus tag: Pnap_4794
so part of: sequence
location: complement(31549..32130)
location: region:31549-32130:-1
so has part: feature:31549-32130:-1:exon
subclass of: SO_0000010

position:31549:-1
position: 31549
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:32130:-1
position: 32130
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31549-32130:-1:exon

PNAP_RS24520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24520
old locus tag: Pnap_4794
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010127427.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MSNIAYYRVSTSDQSIESQRAAMGGSFDEEFDDVGVSGAILAAKRPGFARLLAFIRKGDTLHVYAVDRLGRDALDVQSTVRLLLGKGVAVHVHGLGVMAKGAGELILAVLAQVADMERQRIAERTAAGRQVARESLTRTGLTHRGKESLGRPAKADAGEVARWRREGGASLAKTAEHWGLSLATVKRYCACSQ
SIO_010081: PNAP_RS24520
subclass of: SO_0000673
so part of: PNAP_RS24520
location: complement(31549..32130)
location: region:31549-32130:-1
so has part: feature:31549-32130:-1:exon

WP_011798569.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:31549-32130:-1:exon

PNAP_RS24525
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24525
old locus tag: Pnap_4795
so part of: sequence
location: complement(32650..38079)
location: region:32650-38079:-1
so has part: feature:32650-38079:-1:exon
subclass of: SO_0000010

position:32650:-1
position: 32650
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:38079:-1
position: 38079
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32650-38079:-1:exon

PNAP_RS24525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24525
old locus tag: Pnap_4795
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019677666.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NACHT domain-containing protein
translation: MTSSELTGGTGFTYEDAVAAHYLAAMVGGTTAAALDARVVQRVAQQQADFGEPLDDVIVDAVSLADGTVMRLSLQVKRSLTISGSATNSDFRDVIKRSWQTLQKLDFREQVDRVGAVTGSVAEDPSRAFAAVCEWARASDTTAAFMHRFVDGGNASATHSAVAEAVRAIAQDTGAPLSDDQLHRLLAHLVLIRFDFLHAGSTYEAETIASLQRALVPGQVGRAGDLWNVLRQFARDGAGCSAVHTHASLVRALAGWRFTGAPAFAGDMQTLRESTRHWLDQQPDDIGGMHLARQTLRDELAEQMATHRLTLIKGLPGTGKTVLLRDLVQGLVADGTTLFLTANRLSGRCWSEHARSMGLANTSIEPLLVEVAATGHAMLLIDGLDRIAPEQRAIVNDLLGQLLTNPALSDWRVVATARDAGIEPLRNWVPPALLASSGVGYVDVENLTDEEASSLADSLPALQPLLTGGNERVRTLARRPFFAAVLARGLSRAAYPSGFSPQSEVDLVEAWWKRGGYDAHAPQALARQRGLIELAQRSAPDLGRNVRIRDLSAATRDVLPALEEDGLVQQVRTGHIAQFSHDIFFEWSFLHLLQDQDDDWIAALTVAGEPPALARVVELLSQATYPIPNQWPLDLLALERAQVRPQWLRAWLVAPVFSPRFAEHVDIFAAALAANEHRLFGKLLVWMQAEKTTPNPMVLSGAIGGDLDAAARIRIADSLGWPSDFAAWRRLLTWAIEQVDSIPDKHLGDLVTLFETWQIAFADYPNPVSQRIVAQCATWLHAIEDEHADRRFRYSRPENDATPCPRAPTQLETELRALVLRAARAYPDVAKTYLTKVETIERWADSAFRELMTYAPVLAQTHPAQFARVARRWLMMELPDDTSARWHREAREEGRRREEAEAIPPENRSRWDKLALSSMSIMHHSFSQHDWDRLSIGGDHQGFFPASPLREPFHSLFMHDLATALALIRDVTNHATMAWRQLHRHRHGNATPLPLVLVFPWGQQEFWGDDRHYFWFRGHGGPQVVECALMTLERWAIAQLDAGRPLDEVLQQLLQGHTSIGILGIAVHLALRAKQVSPSTLALLRSLRLWRLDLQRMVQEQQLQSAGLIGFENRGTDSAHRQAVADSNQITSRRLELRDLVPLFVLGGNATLRDACRAALDDFQNRLEFAYKEEEQDTEHVAELRRTAELWSELGHIENYTAEPVPGRDDVVQISMSSSRHEAPEVQASLQHHAQVTREMELWLWVDKCFTSRRWAPGFSVDEAIERAKELTETATAGRSISFMPGSGFTEGAIAGTAAAVICFVDAGGNEVWANDTIESFRVAQDEMSDDMFAGSVIPWHSKIFVAHALAARIKSAREYPDDRESLYRLIAHPLDAVSFVALAGVVGCWERDARFAWCSLSLGLRLAQLVSRRDIYRLDAEVRRRVDADRRAAILAAVLDEYRAQGPLPAWVRPRPSWVRATPDAENPQALDGCEEDGWHSTDDLWDSQYAAKVLQKVLVAAVMASEGRAHYVDALEAFVGWTLDTINPAWRTERRRGRERGDGNLYEWEDQLGRTIASVAPHLPSDETLQRLLGPIFAQPDEIAMRLLAPFALSLVCGEILDGPEIRDDTLQLLQAVLERTLEHDDLRRSQYNDGRMGGFQLPELVKSLLFVVVEHAPGAARFANGRWDDLGRVMPLVDRMVRAIGWHPYVARQFVTLCERSGAAYPADTFADQVMTQIVDGHLPSGWKGSSVPAAIAALVQAHADRQHPLPAALARKLLQVLDALVDLGDRRSAALQQSESFRGVRLAAPVQSEARFARRAFTFGL
SIO_010081: PNAP_RS24525
subclass of: SO_0000673
so part of: PNAP_RS24525
location: complement(32650..38079)
location: region:32650-38079:-1
so has part: feature:32650-38079:-1:exon

WP_011798570.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32650-38079:-1:exon

PNAP_RS24530
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24530
old locus tag: Pnap_4796
so part of: sequence
location: 38503..38901
location: region:38503-38901:1
so has part: feature:38503-38901:1:exon
subclass of: SO_0000010

position:38503:1
position: 38503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:38901:1
position: 38901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:38503-38901:1:exon

PNAP_RS24530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24530
old locus tag: Pnap_4796
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008004265.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF4160 domain-containing protein
translation: MAVLTRNEHCPPHVHVGSSDWEARLEFSFWHDGVRLMDVVPVHRQPTVAVLEGLRQALRTPAHLRRARVCWWQAVQSVCLVNQLWDQEAGEVAAPQDKRPGARLIEAAAFDAQRYRTMLQLKGARSPVEIAL
SIO_010081: PNAP_RS24530
subclass of: SO_0000673
so part of: PNAP_RS24530
location: 38503..38901
location: region:38503-38901:1
so has part: feature:38503-38901:1:exon

WP_232290875.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:38503-38901:1:exon

PNAP_RS24535
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24535
old locus tag: Pnap_4797
so part of: sequence
location: 38898..39350
location: region:38898-39350:1
so has part: feature:38898-39350:1:exon
subclass of: SO_0000010

position:38898:1
position: 38898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39350:1
position: 39350
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:38898-39350:1:exon

PNAP_RS24535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24535
old locus tag: Pnap_4797
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007946602.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2442 domain-containing protein
translation: MTTTVKVQSRFDEPVTQESLAKAIARGRQRGGEGIHATALQYLPQLQSLLFGFADHSAVALPVRNYPELAALDDAELQALTLGFGGSALCLETRDLHISIAGLVSASAPLMDMAATLIAARNGRATSSAKTAAARSNGRKGGRPRLATAL
SIO_010081: PNAP_RS24535
subclass of: SO_0000673
so part of: PNAP_RS24535
location: 38898..39350
location: region:38898-39350:1
so has part: feature:38898-39350:1:exon

WP_011798572.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:38898-39350:1:exon

PNAP_RS24540
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24540
old locus tag: Pnap_4798
so part of: sequence
location: 39355..40350
location: region:39355-40350:1
so has part: feature:39355-40350:1:exon
subclass of: SO_0000010

position:39355:1
position: 39355
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:40350:1
position: 40350
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:39355-40350:1:exon

PNAP_RS24540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24540
old locus tag: Pnap_4798
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011381327.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
translation: MPGAAPPPLKTRDLAAPALARALTAPEFARLAEVPPEAQWFANLDSAQTRRAYQGDLRAFMAFTGIVQPEEFRAVTRAHILAWRAELEKQNLAGASIRRKLAALASLYDYLCESNAVTHNPVRGVKRPKAETSEGKTPALGDAQARALLGAPPSDTLKGKRDRAILSVLLYHALRREELTKLLVKDFAQERRGVPHLRVQGKGGKLRYLPAHPHSLRLVAEYLAASGHGQEADSPLFRRTRAPRAGALASALTPGSVYADVVVRYMAQVGIAGENMGPHALRATAATNALEHQADIAKVQEWLGHASISTTRVYDRRGSRPEDSPTFKVAY
SIO_010081: PNAP_RS24540
subclass of: SO_0000673
so part of: PNAP_RS24540
location: 39355..40350
location: region:39355-40350:1
so has part: feature:39355-40350:1:exon

WP_011798573.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:39355-40350:1:exon

PNAP_RS24545
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24545
old locus tag: Pnap_4799
so part of: sequence
location: 40498..41442
location: region:40498-41442:1
so has part: feature:40498-41442:1:exon
subclass of: SO_0000010

position:40498:1
position: 40498
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41442:1
position: 41442
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:40498-41442:1:exon

PNAP_RS24545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24545
old locus tag: Pnap_4799
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011803286.1
GO function: GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA/RNA non-specific endonuclease
translation: MRKRASTKPSSPRRKSHFIYALVALAIGLSAHSCTDLPVGRQLEAAGASVQTLAGDLGAALRTYGRTSAPGATESAPVARTGGAAASPATGDFSACRHFFASGRPPVVAPRPTHRALCYDAFAILHSGESKTAVYVAQKLNRASVADADEKRTNRFFADARLREAERATLEDYKGSGFDRGHLAPAGQMPTAQAMTQSFSLANMVPQAPQHNQGTWRVSVEDATKKYAGRATGDVYIITGPVYAPGIAQSKGIGPGQVRVPKYLFKLVYDEDKNRAWAYWQLNDNATRGSAPISYGELVRRTGVEFLPGVNAGD
SIO_010081: PNAP_RS24545
subclass of: SO_0000673
so part of: PNAP_RS24545
location: 40498..41442
location: region:40498-41442:1
so has part: feature:40498-41442:1:exon

WP_157040565.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:40498-41442:1:exon

PNAP_RS24550
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24550
old locus tag: Pnap_4800
so part of: sequence
location: 41897..49429
location: region:41897-49429:1
so has part: feature:41897-49429:1:exon
subclass of: SO_0000010

position:41897:1
position: 41897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:49429:1
position: 49429
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41897-49429:1:exon

PNAP_RS24550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24550
old locus tag: Pnap_4800
inference: COORDINATES: protein motif:HMM:NF013930.2
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0003896 - DNA primase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO process: GO:0006260 - DNA replication [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CHC2 zinc finger domain-containing protein
translation: MDRYDIGDLLAKVPLEEVVTRLGIETERRGGVTRALCPFHQDTRPSLNLYSADGNSPAHYHCFACGAHGIAIDLVKQVEGLEFLPAVQWLARQFSIRPIRNQASRRAGRAGASETAQEFAQRIFNARHDVEQFQSWCDERGFDPAFLHGQGLRCITRGVLVESLQAEPVGERAGLIDELQSLGLIKRLRSYSPAAQGKLDLLDQFQDCFHDGRVVIPIRRGEAKRTEVVGFAGRALQSAPPEGVPKYLLTPGFEKSEYLFNEPEAFRAVAQALKNNESARLYLVEGFLDALRLQSLGQPAVALMGISLGKGQFERLTKLSQKMPGTAPLAYCIFLDNDPAGFGGADRLARGLLGLTGVDMRWVGMPWRTEPSLGKDPDSSLRGLSTPEEAAAWLKRYDLPAEAVLLASALGSQDASELQLPRWDKLAATARERALFRTVLAVSKLHGRRSPDSVAARLKESAWVWAQELHAMMGDPGGSARPNSRGMYLDESYPRAALARALAYHGSRRGELPSDDEAWQTLSGNERLFDQTAFARLRATVADAKPWRQAALLDAVQLPRKFTADPKVLGDPRLKVMPHPADLHVQQLLLNELLTQRHDRLAASGGVFSDGIPAVRWYASRQAVEVTGPFDLLNEPDIERDEPETLSFGYQVDMDVLEGDKTPSDQGMFRPFGQCWRAFMACLTDQCHAIGPRVHVLRLDAKRYYDSIQRYLVRDALLTPLKSALTTHGVPEGFRAIFGFHDADAPNWDAALERLVSGLVFEYEYRDPGAVGAPRQSDAVMGIAQGPVLSAYLGTIALFPVDEVARRFMRDTAERLPDGQWRQRAGYARYVDDIVLFADSQELLKKLREVLQAKSSELSIDLIHKGDRVRAGSPDQVMRQLNEGRGLAASVPAWETPIVGDGDSDWSLGDDMPQVDRQCALQLLRHPGLIGDPMLIATQVKTAISAPDLRPNDLGLCARLLWWQVAATELWPDGKAAWHCFEGLWNEACAGQPWVDAFKQRGYDLLYAVEGLDKLMDPNPWQANGLLLKERDEHRAKRVHLAGLVCKPSFFVDVRPAENLEHVRRRARLVARKARRLAHAGAALVPPDVHEEERLTAIEWLCQASQTIAANSDQHPVAALRDRQPARIPGDDLAHAVIEQLKGTHLLSKTKEQDFAPSVPTHGVSAIALAIDFILDSSPKRTGLQRLAQQFPGLLSGRDVNGRQLISNLPITGELSSLYAIDPEQAADGTGRHLYRYSERGASTRAPTSVDLVQVTSTTELQYASEVQSYRFVESASDAVRLVVDVSEGAQRWDDLCALGTTEVDEPITQKAVRLFYALLSIHQYAAGEDSKDAYVPFRPQLFSQGKALTSTLHLLADRVPRKLLGASAWYHDQDDRVASVMVPKERADLWRVGWAVADVLGVAADMSGETGERDEQLDDLGESHGDQSATESFAARAKKELEGYVLRQQLRKLQGAYLSEAQIETETVTSRDLPSTVRRALKLLRTYPSDQNLHAQVRHLLLIEAESRAMALRLQRRSADDLRHALHRVFPDVLARLPLWSLQGLELERPAEHEKPLRPELALMVSLYRAMYPASASASADEVDKDSFLRVALALAAVGVGLRGCVASLWGASVASGSHPMAEHLNVPASWAMPDAVRLDPQGDYQAMRKRLLDGDWAALCKASPWQWMLALIGLLDAGYAKAFDPEAVGAKPLKSVYSFLCAWQTESGSVEDATHIEESERRWPFDALPRFTSERCDALMQELPEALSALDQLCGMRVVRVEAAAFGRGRNTTEFVDARGTSWQLTKPQFTSLYDNTVEQRRPAHGSRALKVWTETRRTSDNDLLAVHTLDAKLGGWFQLASVQADDVEVLKAVPAKPDAVEEGFVPVKAEPSIGDNMPSMPLPSVAGKPLGASVNEGSTPVPVDHLREWQLASWKQRFGVARTSADKDAGDSSHFRIALLQWRITDSYAHPIAEAGLNGLPLGQSSLEELRKQLAGNFKDLNKAAKRGAEFHWGNAE…
SIO_010081: PNAP_RS24550
subclass of: SO_0000673
so part of: PNAP_RS24550
location: 41897..49429
location: region:41897-49429:1
so has part: feature:41897-49429:1:exon

WP_011798575.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:41897-49429:1:exon

PNAP_RS24555
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24555
old locus tag: Pnap_4801
so part of: sequence
location: 49675..51168
location: region:49675-51168:1
so has part: feature:49675-51168:1:exon
subclass of: SO_0000010

position:49675:1
position: 49675
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:51168:1
position: 51168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49675-51168:1:exon

PNAP_RS24555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24555
old locus tag: Pnap_4801
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013094623.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS1182 family transposase
translation: MKRYIQGRDRSQITLPGRLDDYIGQDNPVRVVDAFVDALDLAELEFARMTPAVTGRPGYHPAVLLKLYLYGYLNRIQSSRRLERECQRNIELMWLIGCLTPDFKTIADFRKDNGAGIRNVCRHFVMLCRELKLLTQAVVAIDGSKFKAVNNRERNYTSGKIERREREIDESIQRYLNALQTLDRTQPAELPAKTERLQGKVQKMRQRLQELKEIKAQVEMQPDKQLSLTDSDARAMSTHSMKGTALVGYNVQTVVETQHHLIVAHEVTNTASDRAQLSKQARAALEAMGVRQLQALADRGYYSGPELKACEDAGIAACVPKPMTSNARAQARFGKDDFIYMARDDEYLCPARQRAIHRFTREEDGLQIHVYWSSACPACPMKAQCTTSNYRRIRRWEHEAVMEAVQRRLDRQPEAMKVRKSTVEHVFGTLKHWMGWTHFLMRGKAKVATEMSLHVLAYNLKRVMKILGIAELLKAITEEGLKALCSLQCRQAIQARA
SIO_010081: PNAP_RS24555
subclass of: SO_0000673
so part of: PNAP_RS24555
location: 49675..51168
location: region:49675-51168:1
so has part: feature:49675-51168:1:exon

WP_011798576.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:49675-51168:1:exon

PNAP_RS24560
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24560
old locus tag: Pnap_4802
so part of: sequence
location: complement(51354..51734)
location: region:51354-51734:-1
so has part: feature:51354-51734:-1:exon
subclass of: SO_0000010

position:51354:-1
position: 51354
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:51734:-1
position: 51734
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:51354-51734:-1:exon

PNAP_RS24560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24560
old locus tag: Pnap_4802
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012345667.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PIN domain-containing protein
translation: MNVLVDTSVWVGHFKQRNERLAALLEDGRVVCHPYVVTEVACGTPPNRRAIIAMLAELESGPLATPDEILELIERRGLYGRGCGFVDMSLLASALLSDQTLIWTLDKRLESVAAGLNRAYRAALHS
SIO_010081: PNAP_RS24560
subclass of: SO_0000673
so part of: PNAP_RS24560
location: complement(51354..51734)
location: region:51354-51734:-1
so has part: feature:51354-51734:-1:exon

WP_011798577.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:51354-51734:-1:exon

PNAP_RS24565
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24565
old locus tag: Pnap_4803
so part of: sequence
location: complement(51731..51937)
location: region:51731-51937:-1
so has part: feature:51731-51937:-1:exon
subclass of: SO_0000010

position:51731:-1
position: 51731
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:51937:-1
position: 51937
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:51731-51937:-1:exon

PNAP_RS24565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24565
old locus tag: Pnap_4803
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012345668.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system VapB family antitoxin
translation: MRTTLTIDDQLFARAVALAEPGIEKSELIRECVKAFIQRQAARRLAALGGQAPDIELAPRRREDAPAS
SIO_010081: PNAP_RS24565
subclass of: SO_0000673
so part of: PNAP_RS24565
location: complement(51731..51937)
location: region:51731-51937:-1
so has part: feature:51731-51937:-1:exon

WP_011798578.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:51731-51937:-1:exon

PNAP_RS25375
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS25375
old locus tag: Pnap_4804
so part of: sequence
location: complement(52074..53060)
location: region:52074-53060:-1
so has part: feature:52074-53060:-1:exon
subclass of: SO_0000010

position:52074:-1
position: 52074
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:53060:-1
position: 53060
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:52074-53060:-1:exon

PNAP_RS25375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS25375
old locus tag: Pnap_4804
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTELKLFPGPRLERHKWVVDQANDTGQWTWQDVTEQAHEFLYRDVEVAPDVTLADIFALVEPNPVLRAVYRQEFVDELCAEAAKGPAAPTEEPWERLEYLELYQVWTLDSATQEFEGAGRFRFHGVGVVQEADIVEDGHVMHKKNERIEWGVSLTPVRELLHLPVRVRAQVLVCEEDMDSCNYGKTIQKVIHRQITLGRFIQAALWELSFHGGPGDSAAVRDDLLEQVAEVKAGLTESRAQGDIFESLGFPSRSSVYDHFFDRWSSVSAHELDQALRGLADAQPVQQALAEAFEDRVQVKPEFAALAAREFRKRVRLRLSEAREPRAN
SIO_010081: PNAP_RS25375
subclass of: SO_0000673
so part of: PNAP_RS25375
location: complement(52074..53060)
location: region:52074-53060:-1
so has part: feature:52074-53060:-1:exon

WP_011798579.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:52074-53060:-1:exon

PNAP_RS24585
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24585
old locus tag: Pnap_4805
so part of: sequence
location: complement(53528..54088)
location: region:53528-54088:-1
so has part: feature:53528-54088:-1:exon
subclass of: SO_0000010

position:53528:-1
position: 53528
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:54088:-1
position: 54088
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:53528-54088:-1:exon

PNAP_RS24585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24585
old locus tag: Pnap_4805
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019576200.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Uma2 family endonuclease
translation: MAVSLQKMTLADFLAWEAHQPERHECFRGKTFARVGGTARHNRVILNLASRIGDHLDGTGCQVFAQSMKVQVADGVLYPDVMVTCGKAQAGDEQIVTDPRLIVEVLFPSTRGYDKRDKFVAYRTLASLREYVLIDPAKRQVEVFTLVDAGAWLLTDQSTAGVLSLTSIDCQLSMESVFKGVESQAQ
SIO_010081: PNAP_RS24585
subclass of: SO_0000673
so part of: PNAP_RS24585
location: complement(53528..54088)
location: region:53528-54088:-1
so has part: feature:53528-54088:-1:exon

WP_011798580.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:53528-54088:-1:exon

PNAP_RS24590
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24590
old locus tag: Pnap_4806
so part of: sequence
location: complement(54174..55154)
location: region:54174-55154:-1
so has part: feature:54174-55154:-1:exon
subclass of: SO_0000010

position:54174:-1
position: 54174
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:55154:-1
position: 55154
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:54174-55154:-1:exon

PNAP_RS24590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24590
old locus tag: Pnap_4806
inference: COORDINATES: protein motif:HMM:NF022019.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GIY-YIG nuclease family protein
translation: MSPSTPRTATAWVRDAADPPLHAGDKPPALRKERRARSLTEVCYVYLLIHIDEPRFKIGLSRNPGQRVRQLPEARHIALDRSIQVRLPNYQRAYEVERMLHKGLGGFRMKLRDETGQSWQGSTEWFALSGLPNAIRLLRVMPADADPCVMADLETLRGQPYEHFFVPEIPTPTAVQRQEVEEKNMRKMLAIIEVLTTLREGLFMDARMVPDTRGSVQCLCIHNFRNEFNLRLTKARNKVLSSDFWALQAAKPGGKPALTVPLVRLIRYSEATPGMLELVINDLKVLRRLPAGNRVVTVWQGHLAWLSSTTWSYRTAALKLAKLEKV
SIO_010081: PNAP_RS24590
subclass of: SO_0000673
so part of: PNAP_RS24590
location: complement(54174..55154)
location: region:54174-55154:-1
so has part: feature:54174-55154:-1:exon

WP_011798581.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:54174-55154:-1:exon

PNAP_RS24595
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24595
old locus tag: Pnap_4807
so part of: sequence
location: 55422..55634
location: region:55422-55634:1
so has part: feature:55422-55634:1:exon
subclass of: SO_0000010

position:55422:1
position: 55422
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:55634:1
position: 55634
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:55422-55634:1:exon

PNAP_RS24595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24595
old locus tag: Pnap_4807
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010674971.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MIKCHLSRLMGERKLKISDLARDTGLHRNTITLLYQETATRVDLEAIEALCRYFQVGIADLLEIVDAPAA
SIO_010081: PNAP_RS24595
subclass of: SO_0000673
so part of: PNAP_RS24595
location: 55422..55634
location: region:55422-55634:1
so has part: feature:55422-55634:1:exon

WP_041377830.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:55422-55634:1:exon

PNAP_RS26595
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS26595
so part of: sequence
location: 56019..56228
location: region:56019-56228:1
so has part: feature:56019-56228:1:exon
subclass of: SO_0000010

position:56019:1
position: 56019
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:56228:1
position: 56228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:56019-56228:1:exon

PNAP_RS26595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS26595
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019576296.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF4926 domain-containing protein
translation: MLNEHTQVVLVRPVPGLGLKPGDVGVVVHVHGQGQAYEVEFLSLEGRTIGVQTLDAGDVRAAGGPAACT
SIO_010081: PNAP_RS26595
subclass of: SO_0000673
so part of: PNAP_RS26595
location: 56019..56228
location: region:56019-56228:1
so has part: feature:56019-56228:1:exon

WP_083758115.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:56019-56228:1:exon

PNAP_RS28205
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS28205
pseudo: true
so part of: sequence
location: 56219..>56488
location: region:56219-56488:1
so has part: feature:56219-56488:1:exon
subclass of: SO_0000010

position:56219:1
position: 56219
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:56488:1
position: 56488
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:56219-56488:1:exon

PNAP_RS28205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS28205
inference: COORDINATES: protein motif:HMM:NF013395.2
GO function: GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DNA/RNA non-specific endonuclease
SIO_010081: PNAP_RS28205
subclass of: SO_0000673
so part of: PNAP_RS28205
location: 56219..>56488
location: region:56219-56488:1
so has part: feature:56219-56488:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:56219-56488:1:exon

PNAP_RS28210
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS28210
so part of: sequence
location: 56638..57081
location: region:56638-57081:1
so has part: feature:56638-57081:1:exon
subclass of: SO_0000010

position:56638:1
position: 56638
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:57081:1
position: 57081
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:56638-57081:1:exon

PNAP_RS28210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS28210
inference: COORDINATES: protein motif:HMM:NF013395.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA/RNA non-specific endonuclease
translation: MWAGIEGAARQLAAQEGEIYVVSGPAFIGSGIQQVGNVLVPTHLWKVLYSPKQQRAGAYVVTNDETREYSVVSVSDLETMVGVKLLPGLPRQVRDGGMDLPKPSAQRGKKPRSQQPEEPKEEFTLRDFSRGIIDAIGRAGKHQGSQP
SIO_010081: PNAP_RS28210
subclass of: SO_0000673
so part of: PNAP_RS28210
location: 56638..57081
location: region:56638-57081:1
so has part: feature:56638-57081:1:exon

WP_269667384.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:56638-57081:1:exon

PNAP_RS24610
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24610
old locus tag: Pnap_4810
so part of: sequence
location: 57078..57341
location: region:57078-57341:1
so has part: feature:57078-57341:1:exon
subclass of: SO_0000010

position:57078:1
position: 57078
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:57341:1
position: 57341
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:57078-57341:1:exon

PNAP_RS24610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24610
old locus tag: Pnap_4810
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011798032.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTGKFKPYANEADVLRIGDLEIENRVDRVSLTGDVVLTRDQAGLALARQLQVLIGGIVKALEALEAEEQLPQTVELKAARTVTNPFA
SIO_010081: PNAP_RS24610
subclass of: SO_0000673
so part of: PNAP_RS24610
location: 57078..57341
location: region:57078-57341:1
so has part: feature:57078-57341:1:exon

WP_011798584.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:57078-57341:1:exon

PNAP_RS24615
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24615
old locus tag: Pnap_4811
pseudo: true
so part of: sequence
location: complement(<57414..57596)
location: region:57414-57596:-1
so has part: feature:57414-57596:-1:exon
subclass of: SO_0000010

position:57414:-1
position: 57414
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:57596:-1
position: 57596
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:57414-57596:-1:exon

PNAP_RS24615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24615
old locus tag: Pnap_4811
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003518910.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transcriptional regulator
SIO_010081: PNAP_RS24615
subclass of: SO_0000673
so part of: PNAP_RS24615
location: complement(<57414..57596)
location: region:57414-57596:-1
so has part: feature:57414-57596:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:57414-57596:-1:exon

PNAP_RS24620
type: Gene
subclass of: SO_0000704
RO_0002162: 365044
locus tag: PNAP_RS24620
old locus tag: Pnap_4812
so part of: sequence
location: complement(57909..58718)
location: region:57909-58718:-1
so has part: feature:57909-58718:-1:exon
subclass of: SO_0000010

position:57909:-1
position: 57909
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:58718:-1
position: 58718
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:57909-58718:-1:exon

PNAP_RS24620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 365044
locus tag: PNAP_RS24620
old locus tag: Pnap_4812
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPVEKWNPKNPWIFSKKTAFMQRIADKVRGGCTQYIQGSCKAQKLPFLTHKLSERYPLNRPKITQARRRKAGENAYHWMGYLEPDTQLIHWLVLLAPGETLDATDAWKDPRLDKVRLTGYELVRLTRPGAAAPSWSWRYSRERHDQLRTALVSAIRGRRNLELEQLAHSIWRSPGFAGVREQVKKMRSLITSEWKRSRSKAEVMPDLPRQIGFVRRLADVGQPWSDLMKAVKHERVQEEGGNRQNPVPVPRRAGPKAQENRAGGEGKGV
SIO_010081: PNAP_RS24620
subclass of: SO_0000673
so part of: PNAP_RS24620
location: complement(57909..58718)
location: region:57909-58718:-1
so has part: feature:57909-58718:-1:exon

WP_011798586.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:57909-58718:-1:exon