Comamonas thiooxydans strain NR4028 plasmid pNR4028_IMP1, complete sequence.
type: Entry
definition: Comamonas thiooxydans strain NR4028 plasmid pNR4028_IMP1, complete sequence.
sequence version: NZ_AP025194.1
sequence date: 2023-03-27
sequence: sequence
division: CON
label: NZ_AP025194.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMD00411011
keyword: RefSeq
source: Comamonas thiooxydans
organism: Comamonas thiooxydans
taxonomy: Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.
reference: 1
references: 35265058
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nAP025194.1.\nAnnotated by DFAST https://dfast.ddbj.nig.ac.jp/\n\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.9\nGenome Coverage :: 170x\nSequencing Technology :: llumina MiSeq; Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/27/2023 02:52:34\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,202\nCDSs (total) :: 5,069\nGenes (coding) :: 4,988\nCDSs (with protein) :: 4,988\nGenes (RNA) :: 133\nrRNAs :: 9, 9, 9 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 9, 9 (5S, 16S, 23S)\ntRNAs :: 103\nncRNAs :: 3\nPseudo Genes (total) :: 81\nCDSs (without protein) :: 81\nPseudo Genes (ambiguous residues) :: 0 of 81\nPseudo Genes (frameshifted) :: 39 of 81\nPseudo Genes (incomplete) :: 59 of 81\nPseudo Genes (internal stop) :: 17 of 81\nPseudo Genes (multiple problems) :: 26 of 81\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 29235
topology: circular
so has quality: SO_0000988
location: 1..29235
location: region:1-29235:1
RO_0002162: 363952

NZ_AP025194
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMD00411011
type: BioSample
SIO_000068: biosample

1
title: Comamonas thiooxydans Expressing a Plasmid-Encoded IMP-1 Carbapenemase Isolated From Continuous Ambulatory Peritoneal Dialysis of an Inpatient in Japan
author: Suzuki, Y.
author: Nakano, R.
author: Nakano, A.
author: Tasaki, H.
author: Asada, T.
author: Horiuchi, S.
author: Saito, K.
author: Watanabe, M.
author: Nomura, Y.
author: Kitagawa, D.
author: Lee, S.T.
author: Ui, K.
author: Koizumi, A.
author: Nishihara, Y.
author: Sekine, T.
author: Sakata, R.
author: Ogawa, M.
author: Ohnishi, M.
author: Tsuruya, K.
author: Kasahara, K.
author: Yano, H.
journal: Front Microbiol 13, 808993 (2022)
pubmed: 35265058
comments: DOI:10.3389/fmicb.2022.808993 Publication Status: Online-Only

35265058
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Suzuki, Y.
author: Nakano, R.
author: Nakano, A.
author: Yano, H.
journal: Submitted (22-OCT-2021) Contact:Yuki Suzuki Nara Medical University, Microbiology and Infectious Diseases; Shijo-cho 840, Kashihara, Nara 6348521, Japan

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29235:1
position: 29235
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-29235:1:source
so part of: sequence
organism: Comamonas thiooxydans
mol type: genomic DNA
strain: NR4028
plasmid: pNR4028_IMP1
country: Japan
lat lon: 34.50414145 N 135.79265355 E
collection date: 2019

363952
type: Taxonomy
SIO_000068: taxonomy

Cthiooxydans_RS25775
type: Gene
subclass of: SO_0000704
RO_0002162: 363952
locus tag: Cthiooxydans_RS25775
old locus tag: Cthiooxydans_50150
so part of: sequence
location: 1..1221
location: region:1-1221:1
so has part: feature:1-1221:1:exon
subclass of: SO_0000010

69562811
type: Gene
SIO_000068: ncbigene

position:1221:1
position: 1221
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-1221:1:exon

Cthiooxydans_RS25775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 363952
locus tag: Cthiooxydans_RS25775
old locus tag: Cthiooxydans_50150
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011052942.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MAGTTAQKLDNQTADRFFQSGTALNRVLTEAPYLPRCSDDKTATRVRPREYAIRYPYMQVNRPGFVSWLIFDLDHTKAMIWEDAGLPAPNLIVRNRQSGHSHLYYAIPPVCTTEAARSKPIAYMKAVYEAFAARLDADTDFHSGPVAKTPGHPWWLTHELHAHVYELGELADYVDLAVSSPWGKGPQFDEVSHSRHCILFEHLRHYAYSIVNRERERGSFATFTRLLEAYAHNRNSFQKLGFMDNLAQSSLKATVKSVARWTWDRYTGCGRCHRGVMQLDKDLPLIERQRLAAARTHNVRHKATESKVRAACRLLQQKGEALTQAAIGRVAGLTRQTVATYKHVLEEVLKPVAVAILGGASGKAEDVKHGAHQVTAAPQGAGVPGSASVSLELFPAGPGVVPVLDG
SIO_010081: Cthiooxydans_RS25775
subclass of: SO_0000673
so part of: Cthiooxydans_RS25775
location: 1..1221
location: region:1-1221:1
so has part: feature:1-1221:1:exon

WP_055311960.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-1221:1:exon

Cthiooxydans_RS25780
type: Gene
subclass of: SO_0000704
RO_0002162: 363952
locus tag: Cthiooxydans_RS25780
old locus tag: Cthiooxydans_50160
so part of: sequence
location: 1432..1785
location: region:1432-1785:1
so has part: feature:1432-1785:1:exon
subclass of: SO_0000010

69562812
type: Gene
SIO_000068: ncbigene

position:1432:1
position: 1432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1785:1
position: 1785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1432-1785:1:exon

Cthiooxydans_RS25780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 363952
locus tag: Cthiooxydans_RS25780
old locus tag: Cthiooxydans_50160
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013124620.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MARRSFDDETLAWVREMPLSQVLDKLRDDGQLFWRRDPDFVPAKDKRTVRLFLSSPSGFAWEVLVTGLKWFDVRAGKGGGGGIDLVMHLLGIDFVKAVKLLSSGAGVAGQRRPVRPQ
SIO_010081: Cthiooxydans_RS25780
subclass of: SO_0000673
so part of: Cthiooxydans_RS25780
location: 1432..1785
location: region:1432-1785:1
so has part: feature:1432-1785:1:exon

WP_055311962.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1432-1785:1:exon

Cthiooxydans_RS25785
type: Gene
subclass of: SO_0000704
RO_0002162: 363952
locus tag: Cthiooxydans_RS25785
old locus tag: Cthiooxydans_50170
pseudo: true
so part of: sequence
location: complement(2177..>3895)
location: region:2177-3895:-1
so has part: feature:2177-3895:-1:exon
subclass of: SO_0000010

69562813
type: Gene
SIO_000068: ncbigene

position:2177:-1
position: 2177
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3895:-1
position: 3895
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2177-3895:-1:exon

Cthiooxydans_RS25785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 363952
locus tag: Cthiooxydans_RS25785
old locus tag: Cthiooxydans_50170
inference: COORDINATES: similar to AA sequence:RefSeq:WP_024945956.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: Tn3 family transposase
SIO_010081: Cthiooxydans_RS25785
subclass of: SO_0000673
so part of: Cthiooxydans_RS25785
location: complement(2177..>3895)
location: region:2177-3895:-1
so has part: feature:2177-3895:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2177-3895:-1:exon

Cthiooxydans_RS25790
type: Gene
subclass of: SO_0000704
RO_0002162: 363952
locus tag: Cthiooxydans_RS25790
old locus tag: Cthiooxydans_50180
so part of: sequence
location: 3959..4663
location: region:3959-4663:1
so has part: feature:3959-4663:1:exon
subclass of: SO_0000010

69562814
type: Gene
SIO_000068: ncbigene

position:3959:1
position: 3959
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4663:1
position: 4663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3959-4663:1:exon

Cthiooxydans_RS25790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 363952
locus tag: Cthiooxydans_RS25790
old locus tag: Cthiooxydans_50180
inference: COORDINATES: similar to AA sequence:RefSeq:YP_005221000.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS6-like element IS26 family transposase
translation: MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
SIO_010081: Cthiooxydans_RS25790
subclass of: SO_0000673
so part of: Cthiooxydans_RS25790
location: 3959..4663
location: region:3959-4663:1
so has part: feature:3959-4663:1:exon

WP_001067855.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3959-4663:1:exon

Cthiooxydans_RS25795
type: Gene
subclass of: SO_0000704
RO_0002162: 363952
locus tag: Cthiooxydans_RS25795
old locus tag: Cthiooxydans_50190
so part of: sequence
location: 4783..5523
location: region:4783-5523:1
so has part: feature:4783-5523:1:exon
subclass of: SO_0000010

69562815
type: Gene
SIO_000068: ncbigene

position:4783:1
position: 4783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5523:1
position: 5523
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4783-5523:1:exon

Cthiooxydans_RS25795
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 363952
locus tag: Cthiooxydans_RS25795
old locus tag: Cthiooxydans_50190
EC number: 3.5.2.6
inference: COORDINATES: similar to AA sequence:RefSeq:WP_060614779.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: subclass B1 metallo-beta-lactamase IMP-1
translation: MSKLSVFFIFLFCSIATAAESLPDLKIEKLDEGVYVHTSFEEVNGWGVVPKHGLVVLVNAEAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLNSRSIPTYASELTNELLKKDGKVQATNSFSGVNYWLVKNKIEVFYPGPGHTPDNVVVWLPERKILFGGCFIKPYGLGNLGDANIEAWPKSAKLLKSKYGKAKLVVPSHSEVGDASLLKLTLEQAVKGLNESKKPSKPSN
SIO_010081: Cthiooxydans_RS25795
subclass of: SO_0000673
so part of: Cthiooxydans_RS25795
location: 4783..5523
location: region:4783-5523:1
so has part: feature:4783-5523:1:exon

WP_003159548.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4783-5523:1:exon

Cthiooxydans_RS25800
type: Gene
subclass of: SO_0000704
RO_0002162: 363952
gene: qacG2
locus tag: Cthiooxydans_RS25800
old locus tag: Cthiooxydans_50200
so part of: sequence
location: 5749..6081
location: region:5749-6081:1
so has part: feature:5749-6081:1:exon
subclass of: SO_0000010

69562816
type: Gene
SIO_000068: ncbigene

position:5749:1
position: 5749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6081:1
position: 6081
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5749-6081:1:exon

Cthiooxydans_RS25800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 363952
gene: qacG2
locus tag: Cthiooxydans_RS25800
old locus tag: Cthiooxydans_50200
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015063357.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: quaternary ammonium compound efflux SMR transporter QacG2
translation: MKNWLFLATAIIFEVIATSALKSSEGFTRLVPSFIVVAGYAAAFYFLSLTLKSIPVGIAYAVWSGLGIVLVTAIAWVLHGQKLDMWGFVGVGFIISGVAVLNLLSKASVH
SIO_010081: Cthiooxydans_RS25800
subclass of: SO_0000673
so part of: Cthiooxydans_RS25800
location: 5749..6081
location: region:5749-6081:1
so has part: feature:5749-6081:1:exon

WP_003830719.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5749-6081:1:exon

Cthiooxydans_RS25805
type: Gene
subclass of: SO_0000704
RO_0002162: 363952
locus tag: Cthiooxydans_RS25805
old locus tag: Cthiooxydans_50210
so part of: sequence
location: 6193..7038
location: region:6193-7038:1
so has part: feature:6193-7038:1:exon
subclass of: SO_0000010

69562817
type: Gene
SIO_000068: ncbigene

position:6193:1
position: 6193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7038:1
position: 7038
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6193-7038:1:exon

Cthiooxydans_RS25805
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 363952
locus tag: Cthiooxydans_RS25805
old locus tag: Cthiooxydans_50210
inference: COORDINATES: similar to AA sequence:RefSeq:WP_048608579.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA6
translation: MSNAVPAEISVQLSLALNAIERHLESTLLAVHLYGSALDGGLKPYSDIDLLVTVAARLDETVRQALVVDLLEISASPGQSEALRALEVTIVVHGDVVPWRYPARRELQFGEWQRKDILAGIFEPATTDVDLAILLTKVRQHSLALAGSAAEDFFNPVPEGDLFKALSDTLKLWNSQPDWEGDERNVVLTLSRIWYSAATGKIAPKDIVANWAMERLPDQHKPVLLEARQAYLGQGEDCLASRADQLAAFVHFVKHEATKLLSAMPVMSNNSFKPTPLRGAA
SIO_010081: Cthiooxydans_RS25805
subclass of: SO_0000673
so part of: Cthiooxydans_RS25805
location: 6193..7038
location: region:6193-7038:1
so has part: feature:6193-7038:1:exon

WP_022675713.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6193-7038:1:exon

Cthiooxydans_RS25810
type: Gene
subclass of: SO_0000704
RO_0002162: 363952
gene: qacG2
locus tag: Cthiooxydans_RS25810
old locus tag: Cthiooxydans_50220
so part of: sequence
location: 7149..7481
location: region:7149-7481:1
so has part: feature:7149-7481:1:exon
subclass of: SO_0000010

69562818
type: Gene
SIO_000068: ncbigene

position:7149:1
position: 7149
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7481:1
position: 7481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7149-7481:1:exon

Cthiooxydans_RS25810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 363952
gene: qacG2
locus tag: Cthiooxydans_RS25810
old locus tag: Cthiooxydans_50220
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015063357.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: quaternary ammonium compound efflux SMR transporter QacG2
translation: MKNWLFLATAIIFEVIATSALKSSEGFTRLVPSFIVVAGYAAAFYFLSLTLKSIPVGIAYAVWSGLGIVLVTAIAWVLHGQKLDMWGFVGVGFIISGVAVLNLLSKASVH
SIO_010081: Cthiooxydans_RS25810
subclass of: SO_0000673
so part of: Cthiooxydans_RS25810
location: 7149..7481
location: region:7149-7481:1
so has part: feature:7149-7481:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7149-7481:1:exon

Cthiooxydans_RS25815
type: Gene
subclass of: SO_0000704
RO_0002162: 363952
locus tag: Cthiooxydans_RS25815
old locus tag: Cthiooxydans_50230
so part of: sequence
location: 7692..8039
location: region:7692-8039:1
so has part: feature:7692-8039:1:exon
subclass of: SO_0000010

69562819
type: Gene
SIO_000068: ncbigene

position:7692:1
position: 7692
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8039:1
position: 8039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7692-8039:1:exon

Cthiooxydans_RS25815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 363952
locus tag: Cthiooxydans_RS25815
old locus tag: Cthiooxydans_50230
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000679427.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: quaternary ammonium compound efflux SMR transporter QacE delta 1
translation: MKGWLFLVIAIVGEVIATSALKSSEGFTKLAPSAVVIIGYGIAFYFLSLVLKSIPVGVAYAVWSGLGVVIITAIAWLLHGQKLDAWGFVGMGLIIAAFLLARSPSWKSLRRPTPW
SIO_010081: Cthiooxydans_RS25815
subclass of: SO_0000673
so part of: Cthiooxydans_RS25815
location: 7692..8039
location: region:7692-8039:1
so has part: feature:7692-8039:1:exon

WP_000679427.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7692-8039:1:exon

Cthiooxydans_RS25820
type: Gene
subclass of: SO_0000704
RO_0002162: 363952
gene: sul1
locus tag: Cthiooxydans_RS25820
old locus tag: Cthiooxydans_50240
so part of: sequence
location: 8033..8872
location: region:8033-8872:1
so has part: feature:8033-8872:1:exon
subclass of: SO_0000010

69562820
type: Gene
SIO_000068: ncbigene

position:8033:1
position: 8033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8872:1
position: 8872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8033-8872:1:exon

Cthiooxydans_RS25820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 363952
gene: sul1
locus tag: Cthiooxydans_RS25820
old locus tag: Cthiooxydans_50240
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000259031.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: sulfonamide-resistant dihydropteroate synthase Sul1
translation: MVTVFGILNLTEDSFFDESRRLDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMHRVSIDSFQPETQRYALKRGVGYLNDIQGFPDPALYPDIAEADCRLVVMHSAQRDGIATRTGHLRPEDALDEIVRFFEARVSALRRSGVAADRLILDPGMGFFLSPAPETSLHVLSNLQKLKSALGLPLLVSVSRKSFLGATVGLPVKDLGPASLAAELHAIGNGADYVRTHAPGDLRSAITFSETLAKFRSRDARDRGLDHA
SIO_010081: Cthiooxydans_RS25820
subclass of: SO_0000673
so part of: Cthiooxydans_RS25820
location: 8033..8872
location: region:8033-8872:1
so has part: feature:8033-8872:1:exon

WP_000259031.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8033-8872:1:exon

Cthiooxydans_RS25825
type: Gene
subclass of: SO_0000704
RO_0002162: 363952
locus tag: Cthiooxydans_RS25825
old locus tag: Cthiooxydans_50250
so part of: sequence
location: 9000..9500
location: region:9000-9500:1
so has part: feature:9000-9500:1:exon
subclass of: SO_0000010

69562821
type: Gene
SIO_000068: ncbigene

position:9000:1
position: 9000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9500:1
position: 9500
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9000-9500:1:exon

Cthiooxydans_RS25825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 363952
locus tag: Cthiooxydans_RS25825
old locus tag: Cthiooxydans_50250
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004194535.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GNAT family N-acetyltransferase
translation: MDSEEPPNVRVACSGDIDEVVRLMHDAAAWMSAKGTPAWDVARIDRTFAETFVLRSELLVASCSDGIVGCCTLSAEDPEFWPDALKGEAAYLHKLAVRRTHAGRGVSSALIEACRHAARTQGCAKLRLDCHPNLRGLYERLGFTHVDTFNPGWDPTFIAERLELEI
SIO_010081: Cthiooxydans_RS25825
subclass of: SO_0000673
so part of: Cthiooxydans_RS25825
location: 9000..9500
location: region:9000-9500:1
so has part: feature:9000-9500:1:exon

WP_000376623.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9000-9500:1:exon

Cthiooxydans_RS25830
type: Gene
subclass of: SO_0000704
RO_0002162: 363952
locus tag: Cthiooxydans_RS25830
old locus tag: Cthiooxydans_50260
so part of: sequence
location: complement(9469..10461)
location: region:9469-10461:-1
so has part: feature:9469-10461:-1:exon
subclass of: SO_0000010

69562822
type: Gene
SIO_000068: ncbigene

position:9469:-1
position: 9469
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10461:-1
position: 10461
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9469-10461:-1:exon

Cthiooxydans_RS25830
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 363952
locus tag: Cthiooxydans_RS25830
old locus tag: Cthiooxydans_50260
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001381192.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TniB family NTP-binding protein
translation: MDEYPIIDLSHLLPAAQGLARLPADERIQRLRADRWIGYPRAVEALNRLEALYAWPNKQRMPNLLLVGPTNNGKSMIVEKFRRTHPASSDADQEHIPVLVVQMPSEPSVIRFYVALLAAMGAPLRPRPRLPEMEQLALALLRKVGVRMLVIDELHNVLAGNSVNRREFLNLLRFLGNELRIPLVGVGTRDAYLAIRSDDQLENRFEPMMLPVWEANDDCCSLLASFAASLPLRRPSPIATLDMARYLLTRSEGTIGELAHLLMAAAIVAVESGEEAINHRTLSMACRQPLAQPRHRGRTASDLEATGPSHPDMDLDARTDVRFRVLGVLR
SIO_010081: Cthiooxydans_RS25830
subclass of: SO_0000673
so part of: Cthiooxydans_RS25830
location: complement(9469..10461)
location: region:9469-10461:-1
so has part: feature:9469-10461:-1:exon

WP_001381192.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9469-10461:-1:exon

Cthiooxydans_RS25835
type: Gene
subclass of: SO_0000704
RO_0002162: 363952
locus tag: Cthiooxydans_RS25835
old locus tag: Cthiooxydans_50270
so part of: sequence
location: complement(10464..12143)
location: region:10464-12143:-1
so has part: feature:10464-12143:-1:exon
subclass of: SO_0000010

69562823
type: Gene
SIO_000068: ncbigene

position:10464:-1
position: 10464
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12143:-1
position: 12143
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10464-12143:-1:exon

Cthiooxydans_RS25835
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 363952
locus tag: Cthiooxydans_RS25835
old locus tag: Cthiooxydans_50270
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013124600.1
GO process: GO:0015074 - DNA integration [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DDE-type integrase/transposase/recombinase
translation: MATDTPRIPEQGVATLPDEAWERARRRAEIISPLAQSETVGHEAADMAAQALGLSRRQVYVLIRRARQGSGLVTDLVPGQSGGGKGKGRLPEPVERVIHELLQKRFLTKQKRSLAAFHREVTQVCKAQKLRVPARNTVALRIASLDPRKVIRRREGQDAARDLQGVGGEPPAVTAPLEQVQIDHTVIDLIVVDDRDRQPIGRPYLTLAIDVFTRCVLGMVVTLEAPSAVSVGLCLVHVACDKRPWLEGLNVEMDWQMSGKPLLLYLDNAAEFKSEALRRGCEQHGIRLDYRPLGQPHYGGIVERIIGTAMQMIHDELPGTTFSNPDQRGDYDSENKAALTLRELERWLTLAVGTYHGSVHNGLLQPPAARWAEAVARVGVPAVVTRATSFLVDFLPILRRTLTRTGFVIDHIHYYADALKPWIARRERWPSFLIRRDPRDISRIWVLEPEGQHYLEIPYRTLSHPAVTLWEQRQALAKLRQQGREQVDESALFRMIGQMREIVTSAQKATRKARRDADRRQHLKTSARPDKPVPPDTDIADPQADNLPPAKPFDQIEEW
SIO_010081: Cthiooxydans_RS25835
subclass of: SO_0000673
so part of: Cthiooxydans_RS25835
location: complement(10464..12143)
location: region:10464-12143:-1
so has part: feature:10464-12143:-1:exon

WP_000179844.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10464-12143:-1:exon

Cthiooxydans_RS25840
type: Gene
subclass of: SO_0000704
RO_0002162: 363952
locus tag: Cthiooxydans_RS25840
pseudo: true
so part of: sequence
location: complement(12218..>12283)
location: region:12218-12283:-1
so has part: feature:12218-12283:-1:exon
subclass of: SO_0000010

69562824
type: Gene
SIO_000068: ncbigene

position:12218:-1
position: 12218
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12283:-1
position: 12283
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12218-12283:-1:exon

Cthiooxydans_RS25840
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 363952
locus tag: Cthiooxydans_RS25840
inference: COORDINATES: similar to AA sequence:RefSeq:YP_005229646.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: hypothetical protein
SIO_010081: Cthiooxydans_RS25840
subclass of: SO_0000673
so part of: Cthiooxydans_RS25840
location: complement(12218..>12283)
location: region:12218-12283:-1
so has part: feature:12218-12283:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12218-12283:-1:exon

Cthiooxydans_RS25845
type: Gene
subclass of: SO_0000704
RO_0002162: 363952
locus tag: Cthiooxydans_RS25845
old locus tag: Cthiooxydans_50280
pseudo: true
so part of: sequence
location: complement(12325..>12618)
location: region:12325-12618:-1
so has part: feature:12325-12618:-1:exon
subclass of: SO_0000010

69562825
type: Gene
SIO_000068: ncbigene

position:12325:-1
position: 12325
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12618:-1
position: 12618
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12325-12618:-1:exon

Cthiooxydans_RS25845
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 363952
locus tag: Cthiooxydans_RS25845
old locus tag: Cthiooxydans_50280
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019939714.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: MerR family DNA-binding protein
SIO_010081: Cthiooxydans_RS25845
subclass of: SO_0000673
so part of: Cthiooxydans_RS25845
location: complement(12325..>12618)
location: region:12325-12618:-1
so has part: feature:12325-12618:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12325-12618:-1:exon

Cthiooxydans_RS26035
type: Gene
subclass of: SO_0000704
RO_0002162: 363952
locus tag: Cthiooxydans_RS26035
pseudo: true
so part of: sequence
location: <12617..12748
location: region:12617-12748:1
so has part: feature:12617-12748:1:exon
subclass of: SO_0000010

79413190
type: Gene
SIO_000068: ncbigene

position:12617:1
position: 12617
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:12748:1
position: 12748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12617-12748:1:exon

Cthiooxydans_RS26035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 363952
locus tag: Cthiooxydans_RS26035
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018413487.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: GDCCVxC domain-containing (seleno)protein
SIO_010081: Cthiooxydans_RS26035
subclass of: SO_0000673
so part of: Cthiooxydans_RS26035
location: <12617..12748
location: region:12617-12748:1
so has part: feature:12617-12748:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12617-12748:1:exon

Cthiooxydans_RS25850
type: Gene
subclass of: SO_0000704
RO_0002162: 363952
locus tag: Cthiooxydans_RS25850
old locus tag: Cthiooxydans_50290
so part of: sequence
location: complement(12830..13111)
location: region:12830-13111:-1
so has part: feature:12830-13111:-1:exon
subclass of: SO_0000010

69562826
type: Gene
SIO_000068: ncbigene

position:12830:-1
position: 12830
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13111:-1
position: 13111
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12830-13111:-1:exon

Cthiooxydans_RS25850
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 363952
locus tag: Cthiooxydans_RS25850
old locus tag: Cthiooxydans_50290
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020651365.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLFAGRRWMLWLPVPASVWLALPEWQHIPAMLFGGLIVWIPFWLAWWLSDGFAGMSRWPGTGAPSVSGGVNPHTGKPCTVYHHPWGDTYVGGD
SIO_010081: Cthiooxydans_RS25850
subclass of: SO_0000673
so part of: Cthiooxydans_RS25850
location: complement(12830..13111)
location: region:12830-13111:-1
so has part: feature:12830-13111:-1:exon

WP_222832124.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12830-13111:-1:exon

Cthiooxydans_RS25855
type: Gene
subclass of: SO_0000704
RO_0002162: 363952
locus tag: Cthiooxydans_RS25855
old locus tag: Cthiooxydans_50300
so part of: sequence
location: complement(13129..13383)
location: region:13129-13383:-1
so has part: feature:13129-13383:-1:exon
subclass of: SO_0000010

69562827
type: Gene
SIO_000068: ncbigene

position:13129:-1
position: 13129
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13383:-1
position: 13383
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13129-13383:-1:exon

Cthiooxydans_RS25855
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 363952
locus tag: Cthiooxydans_RS25855
old locus tag: Cthiooxydans_50300
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013723315.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRKALLAGLLAVVAANVVAADGGAPLRGGVCIGPFRGADSVLHCEHIGKVTIRQIYEKGFRVVHMQDDKNTASYVVLVIEEQAR
SIO_010081: Cthiooxydans_RS25855
subclass of: SO_0000673
so part of: Cthiooxydans_RS25855
location: complement(13129..13383)
location: region:13129-13383:-1
so has part: feature:13129-13383:-1:exon

WP_222832126.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13129-13383:-1:exon

Cthiooxydans_RS25860
type: Gene
subclass of: SO_0000704
RO_0002162: 363952
locus tag: Cthiooxydans_RS25860
old locus tag: Cthiooxydans_50310
so part of: sequence
location: complement(13380..13721)
location: region:13380-13721:-1
so has part: feature:13380-13721:-1:exon
subclass of: SO_0000010

69562828
type: Gene
SIO_000068: ncbigene

position:13380:-1
position: 13380
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13721:-1
position: 13721
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13380-13721:-1:exon

Cthiooxydans_RS25860
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 363952
locus tag: Cthiooxydans_RS25860
old locus tag: Cthiooxydans_50310
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011799426.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLASLLICAIEPTGAASLVGGQTDDSVCDLGSAPQNARKLSAAGDFIRAQCKNGQMLVGSGIVPAGGFDSEVVRLARAFCRMADIQTRRTQGNMAGLVMEIDEVRCTIGKLPT
SIO_010081: Cthiooxydans_RS25860
subclass of: SO_0000673
so part of: Cthiooxydans_RS25860
location: complement(13380..13721)
location: region:13380-13721:-1
so has part: feature:13380-13721:-1:exon

WP_229228893.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13380-13721:-1:exon

Cthiooxydans_RS25865
type: Gene
subclass of: SO_0000704
RO_0002162: 363952
locus tag: Cthiooxydans_RS25865
old locus tag: Cthiooxydans_50320
so part of: sequence
location: 13845..14096
location: region:13845-14096:1
so has part: feature:13845-14096:1:exon
subclass of: SO_0000010

69562829
type: Gene
SIO_000068: ncbigene

position:13845:1
position: 13845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14096:1
position: 14096
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13845-14096:1:exon

Cthiooxydans_RS25865
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 363952
locus tag: Cthiooxydans_RS25865
old locus tag: Cthiooxydans_50320
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004348419.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MSPAAQSPAPTAHSARAVLAANMIRLRRERGWSQEALAFECGLHRTFVAHCERQVRNISLDNLERIANAFGVPVYALLMPTGG
SIO_010081: Cthiooxydans_RS25865
subclass of: SO_0000673
so part of: Cthiooxydans_RS25865
location: 13845..14096
location: region:13845-14096:1
so has part: feature:13845-14096:1:exon

WP_197457404.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13845-14096:1:exon

Cthiooxydans_RS25870
type: Gene
subclass of: SO_0000704
RO_0002162: 363952
locus tag: Cthiooxydans_RS25870
old locus tag: Cthiooxydans_50330
so part of: sequence
location: complement(14349..14633)
location: region:14349-14633:-1
so has part: feature:14349-14633:-1:exon
subclass of: SO_0000010

69562830
type: Gene
SIO_000068: ncbigene

position:14349:-1
position: 14349
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14633:-1
position: 14633
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14349-14633:-1:exon

Cthiooxydans_RS25870
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 363952
locus tag: Cthiooxydans_RS25870
old locus tag: Cthiooxydans_50330
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRSKTDWPPEVAGVLYLLELQPPEAAMLVGCFLAAVAHPDHAAELAMFDKLPSEARMAVGRFFSFFLAGGLDDAGREKLHSHMQAWFVRQRRFR
SIO_010081: Cthiooxydans_RS25870
subclass of: SO_0000673
so part of: Cthiooxydans_RS25870
location: complement(14349..14633)
location: region:14349-14633:-1
so has part: feature:14349-14633:-1:exon

WP_034033205.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14349-14633:-1:exon

Cthiooxydans_RS25875
type: Gene
subclass of: SO_0000704
RO_0002162: 363952
locus tag: Cthiooxydans_RS25875
old locus tag: Cthiooxydans_50340
so part of: sequence
location: complement(14623..15252)
location: region:14623-15252:-1
so has part: feature:14623-15252:-1:exon
subclass of: SO_0000010

69562831
type: Gene
SIO_000068: ncbigene

position:14623:-1
position: 14623
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15252:-1
position: 15252
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14623-15252:-1:exon

Cthiooxydans_RS25875
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 363952
locus tag: Cthiooxydans_RS25875
old locus tag: Cthiooxydans_50340
inference: COORDINATES: protein motif:HMM:NF037437.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: antitoxin VbhA family protein
translation: MKDRDHNEAMAGMFQAEPRFAADYLRQVLADGEPADVRAGLRQMADVLRVSQAAAPTDSAPSAGLFDRAGVRYEVACDVIGALIAHYAEIMGREREQAQPNEAVLRVAGAMKAALAGERDDLDPRDSAGIEAAISRYAPLARRLYGQAENDHARQEQRRADFDQVHASLALEGLAMSADDLAVQALLIRGDLTHDEAVQCYRILHRHAQ
SIO_010081: Cthiooxydans_RS25875
subclass of: SO_0000673
so part of: Cthiooxydans_RS25875
location: complement(14623..15252)
location: region:14623-15252:-1
so has part: feature:14623-15252:-1:exon

WP_071846017.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14623-15252:-1:exon

Cthiooxydans_RS25880
type: Gene
subclass of: SO_0000704
RO_0002162: 363952
locus tag: Cthiooxydans_RS25880
old locus tag: Cthiooxydans_50350
so part of: sequence
location: complement(15239..16111)
location: region:15239-16111:-1
so has part: feature:15239-16111:-1:exon
subclass of: SO_0000010

69562832
type: Gene
SIO_000068: ncbigene

position:15239:-1
position: 15239
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16111:-1
position: 16111
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15239-16111:-1:exon

Cthiooxydans_RS25880
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 363952
locus tag: Cthiooxydans_RS25880
old locus tag: Cthiooxydans_50350
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005796449.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA-binding protein
translation: MAREGITFEQVAAAADALVGEGQQPTIRAIRERLGTGSPNTVHKHLTAWREARPVAAAAAPELPQALTAAIAAEIERAAAQARAEIEGRLVQAQGEAVELAAAGEVIEAERDALAEQVAELTRERDTLAGKAEQQAADLADQAQRIEREQQAAESARVELATARLKIEAQAERQTEQAAEIERLRAALADAQQGRTAAEQQAAVLAAKLEACAERVARAEARVEQIEQQAAKAAQANEEARAAAAQEARQVQAERDEARKVAAEAREQAARLAGQLEALTTKERKTDERP
SIO_010081: Cthiooxydans_RS25880
subclass of: SO_0000673
so part of: Cthiooxydans_RS25880
location: complement(15239..16111)
location: region:15239-16111:-1
so has part: feature:15239-16111:-1:exon

WP_034033204.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15239-16111:-1:exon

Cthiooxydans_RS25885
type: Gene
subclass of: SO_0000704
RO_0002162: 363952
locus tag: Cthiooxydans_RS25885
old locus tag: Cthiooxydans_50360
pseudo: true
so part of: sequence
location: complement(<16974..>17296)
location: region:16974-17296:-1
so has part: feature:16974-17296:-1:exon
subclass of: SO_0000010

69562833
type: Gene
SIO_000068: ncbigene

position:16974:-1
position: 16974
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:17296:-1
position: 17296
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16974-17296:-1:exon

Cthiooxydans_RS25885
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 363952
locus tag: Cthiooxydans_RS25885
old locus tag: Cthiooxydans_50360
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015060658.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: Tn3 family transposase
SIO_010081: Cthiooxydans_RS25885
subclass of: SO_0000673
so part of: Cthiooxydans_RS25885
location: complement(<16974..>17296)
location: region:16974-17296:-1
so has part: feature:16974-17296:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16974-17296:-1:exon

Cthiooxydans_RS25890
type: Gene
subclass of: SO_0000704
RO_0002162: 363952
locus tag: Cthiooxydans_RS25890
old locus tag: Cthiooxydans_50370
so part of: sequence
location: complement(17290..17883)
location: region:17290-17883:-1
so has part: feature:17290-17883:-1:exon
subclass of: SO_0000010

69562834
type: Gene
SIO_000068: ncbigene

position:17290:-1
position: 17290
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17883:-1
position: 17883
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17290-17883:-1:exon

Cthiooxydans_RS25890
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 363952
locus tag: Cthiooxydans_RS25890
old locus tag: Cthiooxydans_50370
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012435588.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MLVGYMRVSSDSDRQSTDLQLDALLAAGVDARHLYEDRASGAKDDRTGLTQALEFVRPGDVLVVWKLDRLGRSLSHLLSIVNTLKDRQVAFRSLTEGMDTSTASGELLFHVFGALAQYERALIQERVIAGLAAAKRRGRIGGRPAAIVGEKLDTIVTALNGGMSKAAVCRNFGVKRTTLIETLARIGWSGTKGTTQQ
SIO_010081: Cthiooxydans_RS25890
subclass of: SO_0000673
so part of: Cthiooxydans_RS25890
location: complement(17290..17883)
location: region:17290-17883:-1
so has part: feature:17290-17883:-1:exon

WP_229228883.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17290-17883:-1:exon

Cthiooxydans_RS25895
type: Gene
subclass of: SO_0000704
RO_0002162: 363952
locus tag: Cthiooxydans_RS25895
old locus tag: Cthiooxydans_50380
so part of: sequence
location: 18072..19088
location: region:18072-19088:1
so has part: feature:18072-19088:1:exon
subclass of: SO_0000010

69562835
type: Gene
SIO_000068: ncbigene

position:18072:1
position: 18072
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19088:1
position: 19088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18072-19088:1:exon

Cthiooxydans_RS25895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 363952
locus tag: Cthiooxydans_RS25895
old locus tag: Cthiooxydans_50380
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015557125.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-binding protein
translation: MINQIKLDNFGPLSSINWSVLGKINLIIGGNGSGKTFLLKSIYSSLRTLEDYKRGNEQRSASEILADKLYWTFQAEKIGDLVTRGTDAPLSSCITLDGNEFSYSFGKDTTKQISNLENHVPPRASNSIFLPAKEILSLHQIILKSRELDKVFGFDDTYFDLAKALKIATTKGKNIAEFAQSRTQLESILGGVIEYEEASGRWLFVNAKRQKFPIGVTAEGIKKIAILDILLGNRYLNTNSIVLIDEPESALHPTAISRLLDIVAILAERGIQFFIASHSYFVVKKLFLVAQTRNWSIPVISATSNGWGCDDLKNGMPDNPIIAESIALYKQEVELALK
SIO_010081: Cthiooxydans_RS25895
subclass of: SO_0000673
so part of: Cthiooxydans_RS25895
location: 18072..19088
location: region:18072-19088:1
so has part: feature:18072-19088:1:exon

WP_229228885.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18072-19088:1:exon

Cthiooxydans_RS25900
type: Gene
subclass of: SO_0000704
RO_0002162: 363952
locus tag: Cthiooxydans_RS25900
old locus tag: Cthiooxydans_50390
so part of: sequence
location: 19085..19630
location: region:19085-19630:1
so has part: feature:19085-19630:1:exon
subclass of: SO_0000010

69562836
type: Gene
SIO_000068: ncbigene

position:19085:1
position: 19085
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19630:1
position: 19630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19085-19630:1:exon

Cthiooxydans_RS25900
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 363952
locus tag: Cthiooxydans_RS25900
old locus tag: Cthiooxydans_50390
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006103262.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTTEAIIESGMTFGPFAAGECFYVEKSKCYGLIQDGVQMAEFLLLRQKQDHAPVIWVVEAKSSSPRPATQPNFTEFIDEIRAKLTNGFLLGVAALLQRHSEAKKELPHSFNAVNLQSLGFRFVLVINGHKEEWLVSLQDALSLALKPIIKTWALPPTSVVVLNHESAQRHGLILQAAGAVP
SIO_010081: Cthiooxydans_RS25900
subclass of: SO_0000673
so part of: Cthiooxydans_RS25900
location: 19085..19630
location: region:19085-19630:1
so has part: feature:19085-19630:1:exon

WP_229228887.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19085-19630:1:exon

Cthiooxydans_RS25905
type: Gene
subclass of: SO_0000704
RO_0002162: 363952
locus tag: Cthiooxydans_RS25905
old locus tag: Cthiooxydans_50400
pseudo: true
so part of: sequence
location: <19778..>20371
location: region:19778-20371:1
so has part: feature:19778-20371:1:exon
subclass of: SO_0000010

69562837
type: Gene
SIO_000068: ncbigene

position:19778:1
position: 19778
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:20371:1
position: 20371
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19778-20371:1:exon

Cthiooxydans_RS25905
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 363952
locus tag: Cthiooxydans_RS25905
old locus tag: Cthiooxydans_50400
inference: COORDINATES: similar to AA sequence:RefSeq:WP_021138877.1
note: incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: Tn3 family transposase
SIO_010081: Cthiooxydans_RS25905
subclass of: SO_0000673
so part of: Cthiooxydans_RS25905
location: <19778..>20371
location: region:19778-20371:1
so has part: feature:19778-20371:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:19778-20371:1:exon

Cthiooxydans_RS25910
type: Gene
subclass of: SO_0000704
RO_0002162: 363952
locus tag: Cthiooxydans_RS25910
old locus tag: Cthiooxydans_50410
so part of: sequence
location: complement(20423..21127)
location: region:20423-21127:-1
so has part: feature:20423-21127:-1:exon
subclass of: SO_0000010

69562838
type: Gene
SIO_000068: ncbigene

position:20423:-1
position: 20423
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21127:-1
position: 21127
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20423-21127:-1:exon

Cthiooxydans_RS25910
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 363952
locus tag: Cthiooxydans_RS25910
old locus tag: Cthiooxydans_50410
inference: COORDINATES: similar to AA sequence:RefSeq:YP_005221000.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS6-like element IS26 family transposase
translation: MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
SIO_010081: Cthiooxydans_RS25910
subclass of: SO_0000673
so part of: Cthiooxydans_RS25910
location: complement(20423..21127)
location: region:20423-21127:-1
so has part: feature:20423-21127:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:20423-21127:-1:exon

Cthiooxydans_RS25915
type: Gene
subclass of: SO_0000704
RO_0002162: 363952
locus tag: Cthiooxydans_RS25915
pseudo: true
so part of: sequence
location: <21191..21447
location: region:21191-21447:1
so has part: feature:21191-21447:1:exon
subclass of: SO_0000010

69562839
type: Gene
SIO_000068: ncbigene

position:21191:1
position: 21191
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:21447:1
position: 21447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21191-21447:1:exon

Cthiooxydans_RS25915
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 363952
locus tag: Cthiooxydans_RS25915
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018746197.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
SIO_010081: Cthiooxydans_RS25915
subclass of: SO_0000673
so part of: Cthiooxydans_RS25915
location: <21191..21447
location: region:21191-21447:1
so has part: feature:21191-21447:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:21191-21447:1:exon

Cthiooxydans_RS25920
type: Gene
subclass of: SO_0000704
RO_0002162: 363952
locus tag: Cthiooxydans_RS25920
old locus tag: Cthiooxydans_50420
so part of: sequence
location: 21458..21712
location: region:21458-21712:1
so has part: feature:21458-21712:1:exon
subclass of: SO_0000010

69562840
type: Gene
SIO_000068: ncbigene

position:21458:1
position: 21458
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21712:1
position: 21712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21458-21712:1:exon

Cthiooxydans_RS25920
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 363952
locus tag: Cthiooxydans_RS25920
old locus tag: Cthiooxydans_50420
inference: COORDINATES: protein motif:HMM:NF024555.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIRTILQQYRDESAFNRDLGDRFERLIRAYLKLDPQYVALFSDVWLWKDWPEREAYGYKAPDTGIDLVAKLREEEGFCAIQCKF
SIO_010081: Cthiooxydans_RS25920
subclass of: SO_0000673
so part of: Cthiooxydans_RS25920
location: 21458..21712
location: region:21458-21712:1
so has part: feature:21458-21712:1:exon

WP_206615464.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21458-21712:1:exon

Cthiooxydans_RS25925
type: Gene
subclass of: SO_0000704
RO_0002162: 363952
locus tag: Cthiooxydans_RS25925
old locus tag: Cthiooxydans_50430
so part of: sequence
location: 21785..22225
location: region:21785-22225:1
so has part: feature:21785-22225:1:exon
subclass of: SO_0000010

69562841
type: Gene
SIO_000068: ncbigene

position:21785:1
position: 21785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22225:1
position: 22225
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21785-22225:1:exon

Cthiooxydans_RS25925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 363952
locus tag: Cthiooxydans_RS25925
old locus tag: Cthiooxydans_50430
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSWGSRRSWPRPHCSRASEIAKTATEGVQSFRDALTDLRDSLPDLDFINDEALEGLPDAAQLLAMRTTLDGLKQGFTGHLTAMQALLDDKAGQFTTQHDAWQQAIQAHDVELEKALRTLPATAGKSGQEVGVAYQKLMGRSSASSP
SIO_010081: Cthiooxydans_RS25925
subclass of: SO_0000673
so part of: Cthiooxydans_RS25925
location: 21785..22225
location: region:21785-22225:1
so has part: feature:21785-22225:1:exon

WP_229228889.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21785-22225:1:exon

Cthiooxydans_RS25930
type: Gene
subclass of: SO_0000704
RO_0002162: 363952
locus tag: Cthiooxydans_RS25930
old locus tag: Cthiooxydans_50440
pseudo: true
so part of: sequence
location: 22653..23877
location: region:22653-23877:1
so has part: feature:22653-23877:1:exon
subclass of: SO_0000010

69562842
type: Gene
SIO_000068: ncbigene

position:22653:1
position: 22653
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23877:1
position: 23877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22653-23877:1:exon

Cthiooxydans_RS25930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 363952
locus tag: Cthiooxydans_RS25930
old locus tag: Cthiooxydans_50440
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011803789.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS110-like element ISAisp4 family transposase
SIO_010081: Cthiooxydans_RS25930
subclass of: SO_0000673
so part of: Cthiooxydans_RS25930
location: 22653..23877
location: region:22653-23877:1
so has part: feature:22653-23877:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:22653-23877:1:exon

Cthiooxydans_RS25935
type: Gene
subclass of: SO_0000704
RO_0002162: 363952
locus tag: Cthiooxydans_RS25935
old locus tag: Cthiooxydans_50460
so part of: sequence
location: 23947..24675
location: region:23947-24675:1
so has part: feature:23947-24675:1:exon
subclass of: SO_0000010

69562843
type: Gene
SIO_000068: ncbigene

position:23947:1
position: 23947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24675:1
position: 24675
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23947-24675:1:exon

Cthiooxydans_RS25935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 363952
locus tag: Cthiooxydans_RS25935
old locus tag: Cthiooxydans_50460
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: ABC transporter ATP-binding protein
translation: MSSTLNKRLEGKLKVEIVPEADRTPLMTFLLGCRLDGVGEKRLAFIEDAETISPLSLAQSIQKGSADVQLDWGVTQMVADALTKLQSSQLMELEALELEHRVDIFLNVAHGQADAVFRSLNKLSTGQQCTAILHMLLLENVDPLLMDQPEDNLDNAFIADRIVAELREAKTSRQFLFATHNANIPVFGDAEWIGVFTAAENQGRLGLEAQGSIDVPVIRDQVASILEGGRDAFIQRKEKYEF
SIO_010081: Cthiooxydans_RS25935
subclass of: SO_0000673
so part of: Cthiooxydans_RS25935
location: 23947..24675
location: region:23947-24675:1
so has part: feature:23947-24675:1:exon

WP_229228891.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23947-24675:1:exon

Cthiooxydans_RS25940
type: Gene
subclass of: SO_0000704
RO_0002162: 363952
locus tag: Cthiooxydans_RS25940
old locus tag: Cthiooxydans_50470
pseudo: true
so part of: sequence
location: complement(24788..25116)
location: region:24788-25116:-1
so has part: feature:24788-25116:-1:exon
subclass of: SO_0000010

69562844
type: Gene
SIO_000068: ncbigene

position:24788:-1
position: 24788
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25116:-1
position: 25116
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24788-25116:-1:exon

Cthiooxydans_RS25940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 363952
locus tag: Cthiooxydans_RS25940
old locus tag: Cthiooxydans_50470
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013124610.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: type II toxin-antitoxin system YafQ family toxin
SIO_010081: Cthiooxydans_RS25940
subclass of: SO_0000673
so part of: Cthiooxydans_RS25940
location: complement(24788..25116)
location: region:24788-25116:-1
so has part: feature:24788-25116:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:24788-25116:-1:exon

Cthiooxydans_RS25945
type: Gene
subclass of: SO_0000704
RO_0002162: 363952
locus tag: Cthiooxydans_RS25945
old locus tag: Cthiooxydans_50480
so part of: sequence
location: complement(25088..25369)
location: region:25088-25369:-1
so has part: feature:25088-25369:-1:exon
subclass of: SO_0000010

69562845
type: Gene
SIO_000068: ncbigene

position:25088:-1
position: 25088
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25369:-1
position: 25369
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25088-25369:-1:exon

Cthiooxydans_RS25945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 363952
locus tag: Cthiooxydans_RS25945
old locus tag: Cthiooxydans_50480
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017452571.1
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelB/DinJ family antitoxin
translation: MAATTTMVHVRVDENVKAQAAETLASMGLTVSDAIRVFLTRVVADKELPFALKAPNATSRVAIAEANEIIKSRRARFATADALLNDLEEASRK
SIO_010081: Cthiooxydans_RS25945
subclass of: SO_0000673
so part of: Cthiooxydans_RS25945
location: complement(25088..25369)
location: region:25088-25369:-1
so has part: feature:25088-25369:-1:exon

WP_013124611.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25088-25369:-1:exon

Cthiooxydans_RS25950
type: Gene
subclass of: SO_0000704
RO_0002162: 363952
locus tag: Cthiooxydans_RS25950
old locus tag: Cthiooxydans_50490
so part of: sequence
location: complement(25486..26025)
location: region:25486-26025:-1
so has part: feature:25486-26025:-1:exon
subclass of: SO_0000010

69562846
type: Gene
SIO_000068: ncbigene

position:25486:-1
position: 25486
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26025:-1
position: 26025
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25486-26025:-1:exon

Cthiooxydans_RS25950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 363952
locus tag: Cthiooxydans_RS25950
old locus tag: Cthiooxydans_50490
EC number: 3.1.-.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013124612.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: 3'-5' exonuclease
translation: MTPVVLVIDLEATCDDADGLLSSDMEIIEIGAVWATVEGSVLDTFQALVRPVVCPQLTPFCRQLTNIQQADVDGAELFPVVAARLASFAQRHQAPGATWGSWGQFDAKQLARDCERHGIDSPLAAFEHVNLKRRFAKARKIKEVGMARALQMVGLPLDGAHHRGLDDARNIAKLLPWSI
SIO_010081: Cthiooxydans_RS25950
subclass of: SO_0000673
so part of: Cthiooxydans_RS25950
location: complement(25486..26025)
location: region:25486-26025:-1
so has part: feature:25486-26025:-1:exon

WP_055311950.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25486-26025:-1:exon

Cthiooxydans_RS25955
type: Gene
subclass of: SO_0000704
RO_0002162: 363952
locus tag: Cthiooxydans_RS25955
old locus tag: Cthiooxydans_50500
so part of: sequence
location: complement(26022..26591)
location: region:26022-26591:-1
so has part: feature:26022-26591:-1:exon
subclass of: SO_0000010

69562847
type: Gene
SIO_000068: ncbigene

position:26022:-1
position: 26022
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26591:-1
position: 26591
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26022-26591:-1:exon

Cthiooxydans_RS25955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 363952
locus tag: Cthiooxydans_RS25955
old locus tag: Cthiooxydans_50500
EC number: 3.1.3.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013124613.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HAD family hydrolase
translation: MQTTKAIVFDAFGTLIRYTTRPAPYGSLVDANGRPMDRLACLTRNAPLATLANEIGVGDKLDVILPDLAEELSGLRLFPEVTDVLVKARAAGLRLAVCSNLAYEYGAAVRDLVPELDAYVLSYEVGVAKPHPTMYRLACAELGCAPAETVFVGDSKRCDFDGPQAFGMKARWLDRRGGQSLVDALAGIL
SIO_010081: Cthiooxydans_RS25955
subclass of: SO_0000673
so part of: Cthiooxydans_RS25955
location: complement(26022..26591)
location: region:26022-26591:-1
so has part: feature:26022-26591:-1:exon

WP_055311952.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26022-26591:-1:exon

Cthiooxydans_RS25960
type: Gene
subclass of: SO_0000704
RO_0002162: 363952
locus tag: Cthiooxydans_RS25960
old locus tag: Cthiooxydans_50510
so part of: sequence
location: complement(26624..26824)
location: region:26624-26824:-1
so has part: feature:26624-26824:-1:exon
subclass of: SO_0000010

69562848
type: Gene
SIO_000068: ncbigene

position:26624:-1
position: 26624
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26824:-1
position: 26824
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26624-26824:-1:exon

Cthiooxydans_RS25960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 363952
locus tag: Cthiooxydans_RS25960
old locus tag: Cthiooxydans_50510
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018413495.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRYWTFDPNTCRFERASKAALHAADVAVVNDDTDVQVISDHQPPQRWPSGEPLVVAGVEFERELFE
SIO_010081: Cthiooxydans_RS25960
subclass of: SO_0000673
so part of: Cthiooxydans_RS25960
location: complement(26624..26824)
location: region:26624-26824:-1
so has part: feature:26624-26824:-1:exon

WP_055311953.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26624-26824:-1:exon

Cthiooxydans_RS25965
type: Gene
subclass of: SO_0000704
RO_0002162: 363952
locus tag: Cthiooxydans_RS25965
old locus tag: Cthiooxydans_50520
so part of: sequence
location: complement(26826..27389)
location: region:26826-27389:-1
so has part: feature:26826-27389:-1:exon
subclass of: SO_0000010

69562849
type: Gene
SIO_000068: ncbigene

position:26826:-1
position: 26826
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27389:-1
position: 27389
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26826-27389:-1:exon

Cthiooxydans_RS25965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 363952
locus tag: Cthiooxydans_RS25965
old locus tag: Cthiooxydans_50520
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013124615.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQFKIIRHRDKEGGYREGHRVQCLRRVREVTPDFPEGKNVQRVVAKFDREARELPADVLAILTPAEVEEWREWRVRQDEEELKAAAQFELDTLAESTRVARVGLAKGYATTTTENVAAIRKEIRALIRVASELGLMPEPVRGRPVIEEESEITLLPNFAPPGTPAYESYQRLLDEHERKKAQTNDGG
SIO_010081: Cthiooxydans_RS25965
subclass of: SO_0000673
so part of: Cthiooxydans_RS25965
location: complement(26826..27389)
location: region:26826-27389:-1
so has part: feature:26826-27389:-1:exon

WP_055311955.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26826-27389:-1:exon

Cthiooxydans_RS25970
type: Gene
subclass of: SO_0000704
RO_0002162: 363952
locus tag: Cthiooxydans_RS25970
old locus tag: Cthiooxydans_50530
so part of: sequence
location: 27583..28209
location: region:27583-28209:1
so has part: feature:27583-28209:1:exon
subclass of: SO_0000010

69562850
type: Gene
SIO_000068: ncbigene

position:27583:1
position: 27583
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28209:1
position: 28209
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27583-28209:1:exon

Cthiooxydans_RS25970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 363952
locus tag: Cthiooxydans_RS25970
old locus tag: Cthiooxydans_50530
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005918230.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MIFACVNTKGGVGKTTTAVHLAVMLARQGKTLLIDGDPQASAASWAAWRRETQYDPSPTTTCLAGKAILAEGKQLATGFEHVVVDAGGRDSVGLRSALLLAQRAVIPVGASNLDAAAMTDLLEVVELARDYNPELDVRVLLTRVDPRTKDAAEMLEFLAEQKLTVLPTKVCERVAFRRAIGEGATVQELGRDQAAIAEMEAFFKEVMA
SIO_010081: Cthiooxydans_RS25970
subclass of: SO_0000673
so part of: Cthiooxydans_RS25970
location: 27583..28209
location: region:27583-28209:1
so has part: feature:27583-28209:1:exon

WP_055311957.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27583-28209:1:exon

Cthiooxydans_RS25975
type: Gene
subclass of: SO_0000704
RO_0002162: 363952
locus tag: Cthiooxydans_RS25975
old locus tag: Cthiooxydans_50540
so part of: sequence
location: 28206..28529
location: region:28206-28529:1
so has part: feature:28206-28529:1:exon
subclass of: SO_0000010

69562851
type: Gene
SIO_000068: ncbigene

position:28206:1
position: 28206
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28529:1
position: 28529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28206-28529:1:exon

Cthiooxydans_RS25975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 363952
locus tag: Cthiooxydans_RS25975
old locus tag: Cthiooxydans_50540
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005918229.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSMKGKPNTAQFKPPKDPTAFLEGGEADKAEKPLVAPAAVATQPAATPPAAEETQRYGRARVQKIFNFPEELADRLRREALKRSEEKGGRVTEKDIVIEALEAFLKG
SIO_010081: Cthiooxydans_RS25975
subclass of: SO_0000673
so part of: Cthiooxydans_RS25975
location: 28206..28529
location: region:28206-28529:1
so has part: feature:28206-28529:1:exon

WP_055311959.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28206-28529:1:exon

Cthiooxydans_RS25980
type: Gene
subclass of: SO_0000704
RO_0002162: 363952
gene: parC
locus tag: Cthiooxydans_RS25980
old locus tag: Cthiooxydans_50550
so part of: sequence
location: 28677..28988
location: region:28677-28988:1
so has part: feature:28677-28988:1:exon
subclass of: SO_0000010

69562852
type: Gene
SIO_000068: ncbigene

position:28677:1
position: 28677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28988:1
position: 28988
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28677-28988:1:exon

Cthiooxydans_RS25980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 363952
gene: parC
locus tag: Cthiooxydans_RS25980
old locus tag: Cthiooxydans_50550
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018413498.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParC family partition-associated protein
translation: MLTTTASVVAPKVLKELIAAGSVSAARVEPGDKGLLIVVRAGMNERVLGAARGGLRYFQSLDGAASVLQGYGIMKFDVNTEHWVPKTMVRGYKQAPASVDADE
SIO_010081: Cthiooxydans_RS25980
subclass of: SO_0000673
so part of: Cthiooxydans_RS25980
location: 28677..28988
location: region:28677-28988:1
so has part: feature:28677-28988:1:exon

WP_018413498.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28677-28988:1:exon