Haloquadratum walsbyi DSM 16790 plasmid PL47, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Haloferacales; Haloferacaceae; Haloquadratum.
The genome of the square archaeon Haloquadratum walsbyi : life at the limits of water activity
Submitted (20-JUN-2006) Pfeiffer F., Max-Planck-Institute of Biochemistry, Dept. Membrane Biochemistry, Am Klopferspitz 18, D-82152 Martinsried, GERMANY
REFSEQ INFORMATION: The reference sequence is identical to\nAM180089.1.\nClone requests: fpf@rzg.mpg.de.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/24/2022 01:12:12\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,920\nCDSs (total) :: 2,867\nGenes (coding) :: 2,733\nCDSs (with protein) :: 2,733\nGenes (RNA) :: 53\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 45\nncRNAs :: 2\nPseudo Genes (total) :: 134\nCDSs (without protein) :: 134\nPseudo Genes (ambiguous residues) :: 0 of 134\nPseudo Genes (frameshifted) :: 49 of 134\nPseudo Genes (incomplete) :: 102 of 134\nPseudo Genes (internal stop) :: 44 of 134\nPseudo Genes (multiple problems) :: 50 of 134\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014555872.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048679.1
type II restriction enzyme, methylase subunits
COORDINATES: similar to AA sequence:RefSeq:WP_006885427.1
phospholipase D-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007189743.1
COORDINATES: similar to AA sequence:RefSeq:WP_014554918.1
COORDINATES: similar to AA sequence:RefSeq:WP_014554917.1
COORDINATES: protein motif:HMM:NF012304.2
COORDINATES: similar to AA sequence:RefSeq:WP_011570370.1
COORDINATES: protein motif:HMM:NF013964.2
HNH endonuclease signature motif containing protein
COORDINATES: protein motif:HMM:TIGR01613.1
GO:0003896 - DNA primase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:NF037417.2
COORDINATES: similar to AA sequence:RefSeq:WP_008426223.1
COORDINATES: similar to AA sequence:RefSeq:WP_014554902.1
COORDINATES: similar to AA sequence:RefSeq:WP_014554903.1
COORDINATES: similar to AA sequence:RefSeq:WP_011571366.1
COORDINATES: protein motif:HMM:NF025637.2
GO:0004519 - endonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF016362.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: protein motif:HMM:NF024555.2
COORDINATES: protein motif:HMM:NF023043.2
COORDINATES: similar to AA sequence:RefSeq:WP_008523837.1
COORDINATES: protein motif:HMM:NF012415.2
COORDINATES: protein motif:HMM:NF013003.2