Streptomyces vietnamensis strain GIMV4.0001 plasmid pSVL1, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces.
Complete genome sequence of Streptomyces vietnamensis strain GIMV4.0001, a genetic manipulable producer of the benzoisochromanequinone antibiotic granaticin
Submitted (24-DEC-2014) Culture Collection Center, Guangdong Institute of Mircrobiology, No.100 Xianliezhong Road, Guangzhou, Guangdong 510070, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP010408.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SOAP de novo v. 2.21\nReference-guided Assembly :: AL645882.1; FR845719.1\nGenome Coverage :: 286x\nSequencing Technology :: Illumina Hiseq; Sanger\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/03/2023 05:19:20\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 8,300\nCDSs (total) :: 8,205\nGenes (coding) :: 7,991\nCDSs (with protein) :: 7,991\nGenes (RNA) :: 95\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 71\nncRNAs :: 3\nPseudo Genes (total) :: 214\nCDSs (without protein) :: 214\nPseudo Genes (ambiguous residues) :: 0 of 214\nPseudo Genes (frameshifted) :: 67 of 214\nPseudo Genes (incomplete) :: 183 of 214\nPseudo Genes (internal stop) :: 22 of 214\nPseudo Genes (multiple problems) :: 52 of 214\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Streptomyces vietnamensis
COORDINATES: similar to AA sequence:RefSeq:WP_011039330.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF023505.2
COORDINATES: similar to AA sequence:RefSeq:WP_020138204.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF014786.2
GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:NF040570.1
GO:0004803 - transposase activity [Evidence IEA]
RNA-guided endonuclease TnpB family protein
COORDINATES: protein motif:HMM:NF012923.2
GO:0004867 - serine-type endopeptidase inhibitor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011039316.1
COORDINATES: similar to AA sequence:RefSeq:WP_011039317.1
COORDINATES: similar to AA sequence:RefSeq:WP_007268764.1
COORDINATES: protein motif:HMM:NF024767.2
COORDINATES: protein motif:HMM:NF024758.2
COORDINATES: similar to AA sequence:RefSeq:WP_020132556.1
COORDINATES: similar to AA sequence:RefSeq:WP_014158310.1
COORDINATES: similar to AA sequence:RefSeq:WP_012377500.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005315941.1
COORDINATES: similar to AA sequence:RefSeq:WP_003995873.1
COORDINATES: similar to AA sequence:RefSeq:WP_011029361.1
COORDINATES: similar to AA sequence:RefSeq:WP_003974545.1
COORDINATES: protein motif:HMM:NF033550.5
COORDINATES: protein motif:HMM:NF012784.2
GO:0003676 - nucleic acid binding [Evidence IEA]
S1 RNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017627030.1
COORDINATES: similar to AA sequence:RefSeq:WP_010047153.1
COORDINATES: similar to AA sequence:RefSeq:WP_009719318.1
COORDINATES: similar to AA sequence:RefSeq:WP_020139144.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003965791.1
COORDINATES: protein motif:HMM:NF013757.2
IclR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF016430.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF012514.2
GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018955993.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0051991 - UDP-N-acetyl-D-glucosamine:N-acetylmuramoyl-L-alanyl-D- glutamyl-meso-2, 6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenol 4-beta-N-acetylglucosaminlytransferase activity [Evidence IEA]; GO:0050511 - undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0071555 - cell wall organization [Evidence IEA]; GO:0030259 - lipid glycosylation [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]; GO:0008360 - regulation of cell shape [Evidence IEA]
UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
COORDINATES: protein motif:HMM:NF024214.2
NTP transferase domain-containing protein
COORDINATES: protein motif:HMM:NF013227.2
DegT/DnrJ/EryC1/StrS family aminotransferase
COORDINATES: protein motif:HMM:NF020463.2
COORDINATES: protein motif:HMM:NF015247.2
GO:0008767 - UDP-galactopyranose mutase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024584.2
COORDINATES: protein motif:HMM:NF015983.2
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018100528.1
COORDINATES: similar to AA sequence:RefSeq:WP_014386353.1
COORDINATES: protein motif:HMM:NF024970.2
COORDINATES: similar to AA sequence:RefSeq:WP_010270567.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006374652.1
COORDINATES: similar to AA sequence:RefSeq:WP_018654324.1
COORDINATES: similar to AA sequence:RefSeq:WP_009334873.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024949.2
COORDINATES: similar to AA sequence:RefSeq:WP_020460374.1
COORDINATES: similar to AA sequence:RefSeq:WP_018524380.1
COORDINATES: similar to AA sequence:RefSeq:WP_013177210.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018837625.1
COORDINATES: similar to AA sequence:RefSeq:WP_007268899.1
LysM peptidoglycan-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010636365.1
pilus assembly protein TadG-related protein
COORDINATES: similar to AA sequence:RefSeq:WP_007268897.1
COORDINATES: similar to AA sequence:RefSeq:WP_007268896.1
TadE/TadG family type IV pilus assembly protein
COORDINATES: similar to AA sequence:RefSeq:WP_011039471.1
COORDINATES: similar to AA sequence:RefSeq:WP_007268894.1
COORDINATES: similar to AA sequence:RefSeq:WP_007268893.1
type II secretion system F family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010636371.1
COORDINATES: similar to AA sequence:RefSeq:WP_010636372.1
COORDINATES: similar to AA sequence:RefSeq:WP_010636373.1
COORDINATES: similar to AA sequence:RefSeq:WP_010636374.1
COORDINATES: similar to AA sequence:RefSeq:WP_006374196.1
COORDINATES: similar to AA sequence:RefSeq:WP_018562149.1
COORDINATES: similar to AA sequence:RefSeq:WP_012183214.1
COORDINATES: similar to AA sequence:RefSeq:WP_018545012.1
GO:0016861 - intramolecular oxidoreductase activity, interconverting aldoses and ketoses [Evidence IEA]
COORDINATES: protein motif:HMM:NF012573.2
GO:0005509 - calcium ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003963345.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007268886.1
COORDINATES: similar to AA sequence:RefSeq:WP_008739522.1
COORDINATES: similar to AA sequence:RefSeq:WP_007268884.1
COORDINATES: similar to AA sequence:RefSeq:WP_007268883.1
COORDINATES: similar to AA sequence:RefSeq:WP_007268882.1
COORDINATES: similar to AA sequence:RefSeq:WP_009338555.1
GO:0004672 - protein kinase activity [Evidence IEA]
GO:0006468 - protein phosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011039366.1
COORDINATES: protein motif:HMM:NF018154.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020135006.1
COORDINATES: similar to AA sequence:RefSeq:WP_014151643.1
COORDINATES: similar to AA sequence:RefSeq:WP_006346958.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014048816.1
COORDINATES: similar to AA sequence:RefSeq:WP_019525420.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012862.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:TIGR02391.1
COORDINATES: similar to AA sequence:RefSeq:WP_008742102.1
COORDINATES: similar to AA sequence:RefSeq:WP_018106288.1
GO:0003896 - DNA primase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011039495.1
COORDINATES: similar to AA sequence:RefSeq:WP_011039447.1
COORDINATES: similar to AA sequence:RefSeq:WP_016644109.1
COORDINATES: similar to AA sequence:RefSeq:WP_011039444.1
COORDINATES: similar to AA sequence:RefSeq:WP_007268874.1
COORDINATES: similar to AA sequence:RefSeq:WP_007268873.1
COORDINATES: similar to AA sequence:RefSeq:WP_007268872.1
COORDINATES: similar to AA sequence:RefSeq:WP_007268871.1
COORDINATES: similar to AA sequence:RefSeq:WP_019074630.1
COORDINATES: similar to AA sequence:RefSeq:WP_011039439.1
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:NF040347.1
COORDINATES: similar to AA sequence:RefSeq:WP_017238196.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007495433.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612357.1
COORDINATES: similar to AA sequence:RefSeq:WP_018522241.1
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019524058.1
GO:0005576 - extracellular region [Evidence IEA]
GO:0071555 - cell wall organization [Evidence IEA]; GO:0046677 - response to antibiotic [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003978807.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007387438.1
COORDINATES: similar to AA sequence:RefSeq:WP_018106143.1
COORDINATES: protein motif:HMM:NF022216.2
COORDINATES: similar to AA sequence:RefSeq:WP_018836002.1
COORDINATES: similar to AA sequence:RefSeq:WP_006380142.1
COORDINATES: similar to AA sequence:RefSeq:WP_019074347.1
COORDINATES: similar to AA sequence:RefSeq:WP_019891630.1
COORDINATES: protein motif:HMM:NF024001.2
COORDINATES: similar to AA sequence:RefSeq:WP_018893073.1
COORDINATES: protein motif:HMM:NF012235.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019061514.1
COORDINATES: similar to AA sequence:RefSeq:WP_011039425.1
COORDINATES: similar to AA sequence:RefSeq:WP_016638156.1
COORDINATES: protein motif:HMM:NF037895.2
COORDINATES: protein motif:HMM:NF017832.2
COORDINATES: protein motif:HMM:NF022019.2
GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007268373.1
COORDINATES: similar to AA sequence:RefSeq:WP_008745670.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014136905.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014135373.1
COORDINATES: similar to AA sequence:RefSeq:WP_014140616.1
COORDINATES: similar to AA sequence:RefSeq:WP_014043973.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612359.1
COORDINATES: protein motif:HMM:NF024880.2
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_042799817.1
COORDINATES: similar to AA sequence:RefSeq:WP_012891292.1
COORDINATES: similar to AA sequence:RefSeq:WP_015663156.1
COORDINATES: protein motif:HMM:NF024752.2
COORDINATES: protein motif:HMM:NF017760.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018090000.1
COORDINATES: protein motif:HMM:NF019429.2
COORDINATES: protein motif:HMM:NF019619.2
COORDINATES: protein motif:HMM:NF019846.2
COORDINATES: protein motif:HMM:NF028171.2
carbamoyltransferase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018539983.1
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF040374.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_086558180.1
COORDINATES: similar to AA sequence:RefSeq:WP_003954179.1
COORDINATES: similar to AA sequence:RefSeq:WP_009998345.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003958345.1
COORDINATES: similar to AA sequence:RefSeq:WP_010069912.1
COORDINATES: similar to AA sequence:RefSeq:WP_014386319.1
COORDINATES: similar to AA sequence:RefSeq:WP_014158424.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]
DnaB-like helicase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004985113.1
COORDINATES: similar to AA sequence:RefSeq:WP_014043581.1
COORDINATES: similar to AA sequence:RefSeq:WP_010064743.1
COORDINATES: similar to AA sequence:RefSeq:WP_007505213.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018554950.1
COORDINATES: similar to AA sequence:RefSeq:WP_018569255.1
COORDINATES: similar to AA sequence:RefSeq:WP_010645457.1
COORDINATES: similar to AA sequence:RefSeq:WP_018522961.1
COORDINATES: similar to AA sequence:RefSeq:WP_010645453.1
COORDINATES: similar to AA sequence:RefSeq:WP_009998292.1
COORDINATES: similar to AA sequence:RefSeq:WP_018522964.1
COORDINATES: protein motif:HMM:NF013003.2
COORDINATES: similar to AA sequence:RefSeq:WP_009309229.1
COORDINATES: similar to AA sequence:RefSeq:WP_017947086.1
COORDINATES: similar to AA sequence:RefSeq:WP_007830767.1
COORDINATES: similar to AA sequence:RefSeq:WP_011039320.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017238491.1
COORDINATES: similar to AA sequence:RefSeq:WP_014043613.1
COORDINATES: protein motif:HMM:NF040363.1
COORDINATES: protein motif:HMM:NF014520.2
COORDINATES: similar to AA sequence:RefSeq:WP_018833734.1
COORDINATES: similar to AA sequence:RefSeq:WP_016638198.1
COORDINATES: similar to AA sequence:RefSeq:WP_005473972.1
COORDINATES: similar to AA sequence:RefSeq:WP_020131513.1
COORDINATES: similar to AA sequence:RefSeq:WP_018385993.1
COORDINATES: protein motif:HMM:NF039985.1
COORDINATES: similar to AA sequence:RefSeq:WP_020124883.1
COORDINATES: protein motif:HMM:NF024676.2
COORDINATES: protein motif:HMM:NF040036.1
DUF6248 family natural product biosynthesis protein
COORDINATES: similar to AA sequence:RefSeq:WP_011039322.1
COORDINATES: similar to AA sequence:RefSeq:WP_019062403.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012889942.1
COORDINATES: similar to AA sequence:RefSeq:WP_010645079.1
COORDINATES: protein motif:HMM:NF039696.1
COORDINATES: similar to AA sequence:RefSeq:WP_011039319.1
COORDINATES: protein motif:HMM:NF013658.2
GO:0003824 - catalytic activity [Evidence IEA]
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018522914.1
COORDINATES: similar to AA sequence:RefSeq:WP_011039308.1
COORDINATES: similar to AA sequence:RefSeq:WP_016638222.1