Chiloscyllium plagiosum isolate BGI_BamShark_2017 chromosome 49, ASM401019v2, whole genome shotgun sequence.
type: Entry
definition: Chiloscyllium plagiosum isolate BGI_BamShark_2017 chromosome 49, ASM401019v2, whole genome shotgun sequence.
sequence version: NC_057758.1
sequence date: 2021-09-20
sequence: sequence
division: CON
label: NC_057758.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA762070
dblink: SAMN09508879
keyword: WGS
keyword: RefSeq
source: Chiloscyllium plagiosum (whitespotted bambooshark)
organism: Chiloscyllium plagiosum
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Orectolobiformes; Hemiscylliidae; Chiloscyllium.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM013004.1.\nAssembly name: ASM401019v2\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the BGI on 2019/01/10. The\noriginal whole-genome shotgun project has the accession\nQPFF00000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: BGI\nAssembly Method :: platanus v. 1.2.4; 3ddna v. 170123\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 280.0x\nSequencing Technology :: BGIseq-500\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Chiloscyllium plagiosum Annotation\n Release 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 9983820
topology: linear
so has quality: SO_0000987
location: 1..9983820
location: region:1-9983820:1
RO_0002162: 36176

NC_057758
type: RefSeq
SIO_000068: refseq

PRJNA762070
type: BioProject
SIO_000068: bioproject

SAMN09508879
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9983820:1
position: 9983820
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-9983820:1:source
so part of: sequence
organism: Chiloscyllium plagiosum
mol type: genomic DNA
isolate: BGI_BamShark_2017
isolation source: bamboo shark captured from coastal area
chromosome: 49
sex: female
tissue type: blood
country: China: Fujian

36176
type: Taxonomy
SIO_000068: taxonomy

LOC122544479
type: Gene
subclass of: SO_0000704
RO_0002162: 36176
gene: LOC122544479
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: <8388..10056
location: region:8388-10056:1
so has part: feature:8388-10056:1:exon
subclass of: SO_0000010

122544479
type: Gene
SIO_000068: ncbigene

position:8388:1
position: 8388
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:10056:1
position: 10056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8388-10056:1:exon

LOC122544479
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 36176
gene: LOC122544479
product: perforin-1-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 20% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_043683713.1
SIO_010081: LOC122544479
subclass of: SO_0000673
so part of: LOC122544479
location: join(<8388..8737,8860..9036,9078..9388,9523..10056)
location: region:8388-10056:1
so has part: feature:8388-8737:1:exon
so has part: feature:8860-9036:1:exon
so has part: feature:9078-9388:1:exon
so has part: feature:9523-10056:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8388-8737:1:exon

position:8737:1
position: 8737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:8860-9036:1:exon

position:8860:1
position: 8860
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9036:1
position: 9036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:9078-9388:1:exon

position:9078:1
position: 9078
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9388:1
position: 9388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:9523-10056:1:exon

position:9523:1
position: 9523
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC122544479
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 36176
gene: LOC122544479
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: perforin-1-like
translation: FVPGAWLAGQVYDVVTLQPMGAFVIDVNNWRMGTGSCILCDNELLNGVLPVSVEDWRTPGSCQRSLSSRLYQSAAKLSESATSSIQERLACGHSSGNAQSWCPDGAGWIPIQDGGVCLPTSSVSHDKDPYQKLVATYGTHYLTAVELCGRYKDVTAIRTCEAAFEGYTAVEVKDCLSQSYKRCQEEARSMKLHKNFQQAFSDRETEVTGGHASQGVDPFFSGDKSAFTRWTDSLLTSPGLVHYALAPLHHLLPAGDPRQKNVRRYFGEYIMGKALSQKCVSRRARNFGGDYFESTDGYVVIKYGEAQTRTAVISGNNYPKWNARLDLGEVKAESGHKLTFEVWDNDSPKSDELLGKWQVRLTSGTHSEVCFLNYGQVTSDYTFTCGLHLGGANLPGLQARPWQCPLHHCPGLKQPHLPSQHTLAHQLLQIAINT
SIO_010081: LOC122544479
subclass of: SO_0000673
so part of: LOC122544479
location: join(<8388..8737,8860..9036,9078..9388,9523..9989)
location: region:8388-9989:1
so has part: feature:8388-8737:1:exon
so has part: feature:8860-9036:1:exon
so has part: feature:9078-9388:1:exon
so has part: feature:9523-9989:1:exon

XP_043539648.1
type: Protein
SIO_000068: ncbiprotein

position:9989:1
position: 9989
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8388-8737:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:8860-9036:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:9078-9388:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:9523-9989:1:exon

LOC122544467
type: Gene
subclass of: SO_0000704
RO_0002162: 36176
gene: LOC122544467
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(208422..228839)
location: region:208422-228839:-1
so has part: feature:208422-228839:-1:exon
subclass of: SO_0000010

122544467
type: Gene
SIO_000068: ncbigene

position:208422:-1
position: 208422
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:228839:-1
position: 228839
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:208422-228839:-1:exon

LOC122544467
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 36176
gene: LOC122544467
product: perforin-1-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
transcript id: XM_043683705.1
SIO_010081: LOC122544467
subclass of: SO_0000673
so part of: LOC122544467
location: complement(join(208422..208624,214525..216062,228814..228839))
location: region:208422-228839:-1
so has part: feature:228814-228839:-1:exon
so has part: feature:214525-216062:-1:exon
so has part: feature:208422-208624:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:228814-228839:-1:exon

position:228814:-1
position: 228814
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:214525-216062:-1:exon

position:214525:-1
position: 214525
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:216062:-1
position: 216062
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:208422-208624:-1:exon

position:208624:-1
position: 208624
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC122544467
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 36176
gene: LOC122544467
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: perforin-1-like
translation: MLKSVSNLKSAVRPVTDAMMPAWHSNLGWLIFLCFPLRGILSVCTTESDSECRNVSFVPGSRLAGDGYDVVTLRPKGAFVIDVNTWRFTNGSCTLCDNGHLSNVRQRLPVSLVDWRTMSSCQRSLSSQLYHSAAKLSESATSAITNDWQADLLILPEMSTQVNWVLAGSKSKLVTFGTTHSKRDRHIFSSHQFQCLYYQYRVKENPKLAPEFANSISRLPDIINDDTIYWYRKLVATYGTHYIKAVELGGSFKDVTAIPTCQVASKGYTAEEVKDCLSMEASVMVGLIARGSFSDQKCRQMARAMKHHDNVYQAFSDREVELNGGQTKQSADLLFNKDGSAFTQWMVTLPTHPGMVRYALAPLHHLLPKNDPRHKNLRRYISYYIAVSALNQQCGMGTQCPHGSYRDPHQPCTCMCHEDSHVDRNCCSKEKGLGHLVVVVLKGQGLWADYFSAADSFVVVKYGQKSSRTFVSYDNNNPVWNEKLDLGHVNAESSQNLIFEVWDVDVKYDDLLGTCKDRLTSDDVRFAVHISVAHKPTSTFKQPLMYPKDPLFTTIKTNVIYKIPCKICEDTASDKLAGTMTPRNMNTN
SIO_010081: LOC122544467
subclass of: SO_0000673
so part of: LOC122544467
location: complement(join(208422..208624,214525..216062,228814..228839))
location: region:208422-228839:-1
so has part: feature:228814-228839:-1:exon
so has part: feature:214525-216062:-1:exon
so has part: feature:208422-208624:-1:exon

XP_043539640.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:228814-228839:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:214525-216062:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:208422-208624:-1:exon

LOC122544468
type: Gene
subclass of: SO_0000704
RO_0002162: 36176
gene: LOC122544468
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 226538..231674
location: region:226538-231674:1
so has part: feature:226538-231674:1:exon
subclass of: SO_0000010

122544468
type: Gene
SIO_000068: ncbigene

position:226538:1
position: 226538
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:231674:1
position: 231674
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:226538-231674:1:exon

LOC122544468
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 36176
gene: LOC122544468
product: perforin-1-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 60% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_043683706.1
SIO_010081: LOC122544468
subclass of: SO_0000673
so part of: LOC122544468
location: join(226538..226574,229588..230076,231354..231674)
location: region:226538-231674:1
so has part: feature:226538-226574:1:exon
so has part: feature:229588-230076:1:exon
so has part: feature:231354-231674:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:226538-226574:1:exon

position:226574:1
position: 226574
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:229588-230076:1:exon

position:229588:1
position: 229588
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:230076:1
position: 230076
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:231354-231674:1:exon

position:231354:1
position: 231354
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC122544468
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 36176
gene: LOC122544468
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: perforin-1-like
translation: MPDWNSQLGTLLFLCLLFRGALSACTTSTTEECCNAGFVPGSRLAGQGYDVVTLQPKGAFVIDVNTWHTANGSCTLCDNELLNGVRQRLPISLVDWRTLSSCRRSVSSQLYRSAAKLAESASSSITNNWHADLSVQKPEVGVNVVLAGSHSKMVKAESGHKLTIEVWDQDDISNNDLLGKCQVRLTSGNHCEVCYLKYGKVTYAYTFTCGLHLGGATCQDYTPGPGSVPFTTALGGTNRTLLLNTHFPNTRSKSPIPII
SIO_010081: LOC122544468
subclass of: SO_0000673
so part of: LOC122544468
location: join(229618..230076,231354..231674)
location: region:229618-231674:1
so has part: feature:229618-230076:1:exon
so has part: feature:231354-231674:1:exon

XP_043539641.1
type: Protein
SIO_000068: ncbiprotein

position:229618:1
position: 229618
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:229618-230076:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:231354-231674:1:exon

LOC122544456
type: Gene
subclass of: SO_0000704
RO_0002162: 36176
gene: LOC122544456
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(237641..249132)
location: region:237641-249132:-1
so has part: feature:237641-249132:-1:exon
subclass of: SO_0000010

122544456
type: Gene
SIO_000068: ncbigene

position:237641:-1
position: 237641
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:249132:-1
position: 249132
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:237641-249132:-1:exon

LOC122544456
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 36176
gene: LOC122544456
product: perforin-1-like, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_043683691.1
SIO_010081: LOC122544456
subclass of: SO_0000673
so part of: LOC122544456
location: complement(join(237641..239500,239564..239811,249032..249132))
location: region:237641-249132:-1
so has part: feature:249032-249132:-1:exon
so has part: feature:239564-239811:-1:exon
so has part: feature:237641-239500:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:249032-249132:-1:exon

position:249032:-1
position: 249032
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:239564-239811:-1:exon

position:239564:-1
position: 239564
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:239811:-1
position: 239811
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:237641-239500:-1:exon

position:239500:-1
position: 239500
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC122544456
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 36176
gene: LOC122544456
product: perforin-1-like, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_043683690.1
SIO_010081: LOC122544456
subclass of: SO_0000673
so part of: LOC122544456
location: complement(join(237641..239811,249032..249132))
location: region:237641-249132:-1
so has part: feature:249032-249132:-1:exon
so has part: feature:237641-239811:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:249032-249132:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:237641-239811:-1:exon

LOC122544456
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 36176
gene: LOC122544456
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: perforin-1-like isoform X2
translation: MGKGPTCPDCSFNRDLQTTGAEMPAGHLKSGCFLFLYLLFQDALSICTIRSASECRDANVVPGARLAGLGYDVVTLRPKGASVIDVSAWRSANGSCTRTLSSCRLSLSSGLHHSAAELSQSATSDITNDWRADLPLPPKPGTGANPVLAGSKSKLVEFGTTHSKSDRYSFASHQFQCLYYQFRVKAQPLLAPEFTRSLSRLPTVMNDDTKYQYKKLVATYGTHYLKSVELGGHYKSVTAIRTCEAASEGYSTEEVKDCLSLDAHVTLQLTTKSSAGYQKCKEMARAMKPNKVYQAFSDRETELRGGRVQQRTDLFFSGDSSAFTSWMGSLSTHPGMGRYALEPLHHLLPNSDPRHAILRRYISDYIAGGGLSLQCTRCPHGSYHDPRQPCSCLCHGESHVDRNCCSKGKGLGRLVVTVWEGRDLRGDAFSKADGYVVVKYGEAKARTSMISNNRHPQWNAELDLGEVKAESGHKLTIEAWDQDAKHDDLLGTCQVRLTSGTHGETCFLKYGKVTYGYTFTCGPHLGGATCQDYMPSPAE
SIO_010081: LOC122544456
subclass of: SO_0000673
so part of: LOC122544456
location: complement(join(238172..239500,239564..239811,249032..249074))
location: region:238172-249074:-1
so has part: feature:249032-249074:-1:exon
so has part: feature:239564-239811:-1:exon
so has part: feature:238172-239500:-1:exon

XP_043539626.1
type: Protein
SIO_000068: ncbiprotein

position:238172:-1
position: 238172
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:249074:-1
position: 249074
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:249032-249074:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:239564-239811:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:238172-239500:-1:exon

LOC122544456
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 36176
gene: LOC122544456
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: perforin-1-like isoform X1
translation: MGKGPTCPDCSFNRDLQTTGAEMPAGHLKSGCFLFLYLLFQDALSICTIRSASECRDANVVPGARLAGLGYDVVTLRPKGASVIDVSAWRSANGSCTLCRNGHLGNVRQRLPTSLVDWRTLSSCRLSLSSGLHHSAAELSQSATSDITNDWRADLPLPPKPGTGANPVLAGSKSKLVEFGTTHSKSDRYSFASHQFQCLYYQFRVKAQPLLAPEFTRSLSRLPTVMNDDTKYQYKKLVATYGTHYLKSVELGGHYKSVTAIRTCEAASEGYSTEEVKDCLSLDAHVTLQLTTKSSAGYQKCKEMARAMKPNKVYQAFSDRETELRGGRVQQRTDLFFSGDSSAFTSWMGSLSTHPGMGRYALEPLHHLLPNSDPRHAILRRYISDYIAGGGLSLQCTRCPHGSYHDPRQPCSCLCHGESHVDRNCCSKGKGLGRLVVTVWEGRDLRGDAFSKADGYVVVKYGEAKARTSMISNNRHPQWNAELDLGEVKAESGHKLTIEAWDQDAKHDDLLGTCQVRLTSGTHGETCFLKYGKVTYGYTFTCGPHLGGATCQDYMPSPAE
SIO_010081: LOC122544456
subclass of: SO_0000673
so part of: LOC122544456
location: complement(join(238172..239811,249032..249074))
location: region:238172-249074:-1
so has part: feature:249032-249074:-1:exon
so has part: feature:238172-239811:-1:exon

XP_043539625.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:249032-249074:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:238172-239811:-1:exon

LOC122544457
type: Gene
subclass of: SO_0000704
RO_0002162: 36176
gene: LOC122544457
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1374080..1386370)
location: region:1374080-1386370:-1
so has part: feature:1374080-1386370:-1:exon
subclass of: SO_0000011

122544457
type: Gene
SIO_000068: ncbigene

position:1374080:-1
position: 1374080
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1386370:-1
position: 1386370
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1374080-1386370:-1:exon

LOC122544457
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 36176
nc RNA class: lncRNA
gene: LOC122544457
product: uncharacterized LOC122544457, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_006310349.1
SIO_010081: LOC122544457
subclass of: SO_0000673
so part of: LOC122544457
location: complement(join(1374080..1374313,1376900..1376979,1385741..1386370))
location: region:1374080-1386370:-1
so has part: feature:1385741-1386370:-1:exon
so has part: feature:1376900-1376979:-1:exon
so has part: feature:1374080-1374313:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1385741-1386370:-1:exon

position:1385741:-1
position: 1385741
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1376900-1376979:-1:exon

position:1376900:-1
position: 1376900
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1376979:-1
position: 1376979
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1374080-1374313:-1:exon

position:1374313:-1
position: 1374313
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC122544457
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 36176
nc RNA class: lncRNA
gene: LOC122544457
product: uncharacterized LOC122544457, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_006310348.1
SIO_010081: LOC122544457
subclass of: SO_0000673
so part of: LOC122544457
location: complement(join(1374080..1375199,1376900..1376979,1385741..1386370))
location: region:1374080-1386370:-1
so has part: feature:1385741-1386370:-1:exon
so has part: feature:1376900-1376979:-1:exon
so has part: feature:1374080-1375199:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1385741-1386370:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1376900-1376979:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1374080-1375199:-1:exon

position:1375199:-1
position: 1375199
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC122544458
type: Gene
subclass of: SO_0000704
RO_0002162: 36176
gene: LOC122544458
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1482160..1491818
location: region:1482160-1491818:1
so has part: feature:1482160-1491818:1:exon
subclass of: SO_0000010

122544458
type: Gene
SIO_000068: ncbigene

position:1482160:1
position: 1482160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1491818:1
position: 1491818
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1482160-1491818:1:exon

LOC122544458
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 36176
gene: LOC122544458
product: zinc finger protein 239-like, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XM_043683695.1
SIO_010081: LOC122544458
subclass of: SO_0000673
so part of: LOC122544458
location: join(1482160..1482197,1487754..1489989)
location: region:1482160-1489989:1
so has part: feature:1482160-1482197:1:exon
so has part: feature:1487754-1489989:1:exon

position:1489989:1
position: 1489989
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1482160-1482197:1:exon

position:1482197:1
position: 1482197
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1487754-1489989:1:exon

position:1487754:1
position: 1487754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC122544458
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 36176
gene: LOC122544458
product: zinc finger protein 239-like, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_006310350.1
SIO_010081: LOC122544458
so part of: LOC122544458
location: join(1482166..1482278,1491780..1491818)
location: region:1482166-1491818:1
so has part: feature:1482166-1482278:1:exon
so has part: feature:1491780-1491818:1:exon

position:1482166:1
position: 1482166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1482166-1482278:1:exon

position:1482278:1
position: 1482278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1491780-1491818:1:exon

position:1491780:1
position: 1491780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC122544458
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 36176
gene: LOC122544458
product: zinc finger protein 239-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XM_043683692.1
SIO_010081: LOC122544458
subclass of: SO_0000673
so part of: LOC122544458
location: join(1482166..1482392,1487754..1489989)
location: region:1482166-1489989:1
so has part: feature:1482166-1482392:1:exon
so has part: feature:1487754-1489989:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1482166-1482392:1:exon

position:1482392:1
position: 1482392
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1487754-1489989:1:exon

LOC122544458
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 36176
gene: LOC122544458
product: zinc finger protein 239-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
transcript id: XM_043683693.1
SIO_010081: LOC122544458
subclass of: SO_0000673
so part of: LOC122544458
location: join(1482166..1482278,1487754..1489989)
location: region:1482166-1489989:1
so has part: feature:1482166-1482278:1:exon
so has part: feature:1487754-1489989:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1482166-1482278:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1487754-1489989:1:exon

LOC122544458
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 36176
gene: LOC122544458
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein 239-like
translation: MNKSWKCGQCGEGFPSPSALDIHERRHTGEKPFTCFMCEKGFISVSNLLRHQQLHAGKRPFTCSACGKGFCDSHNLLQHQRIHTGERPFACSHCGKGFTQLSNLHVHQRVHTGEKPFICSQCGRGFTQLSNLQTHQRVHTGERPFICSQCREGFSRLSNLQKHERVHTGERPFICSQCGKGFTQSSHLRKHQQIHTKERSFTCSQCGKGYNRFSSLQKHQRDHQ
SIO_010081: LOC122544458
subclass of: SO_0000673
so part of: LOC122544458
location: 1488108..1488782
location: region:1488108-1488782:1
so has part: feature:1488108-1488782:1:exon

XP_043539627.1
type: Protein
SIO_000068: ncbiprotein

position:1488108:1
position: 1488108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1488782:1
position: 1488782
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1488108-1488782:1:exon

LOC122544458
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 36176
gene: LOC122544458
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein 239-like
translation: MNKSWKCGQCGEGFPSPSALDIHERRHTGEKPFTCFMCEKGFISVSNLLRHQQLHAGKRPFTCSACGKGFCDSHNLLQHQRIHTGERPFACSHCGKGFTQLSNLHVHQRVHTGEKPFICSQCGRGFTQLSNLQTHQRVHTGERPFICSQCREGFSRLSNLQKHERVHTGERPFICSQCGKGFTQSSHLRKHQQIHTKERSFTCSQCGKGYNRFSSLQKHQRDHQ
SIO_010081: LOC122544458
subclass of: SO_0000673
so part of: LOC122544458
location: 1488108..1488782
location: region:1488108-1488782:1
so has part: feature:1488108-1488782:1:exon

XP_043539628.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1488108-1488782:1:exon

LOC122544458
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 36176
gene: LOC122544458
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein 239-like
translation: MNKSWKCGQCGEGFPSPSALDIHERRHTGEKPFTCFMCEKGFISVSNLLRHQQLHAGKRPFTCSACGKGFCDSHNLLQHQRIHTGERPFACSHCGKGFTQLSNLHVHQRVHTGEKPFICSQCGRGFTQLSNLQTHQRVHTGERPFICSQCREGFSRLSNLQKHERVHTGERPFICSQCGKGFTQSSHLRKHQQIHTKERSFTCSQCGKGYNRFSSLQKHQRDHQ
SIO_010081: LOC122544458
subclass of: SO_0000673
so part of: LOC122544458
location: 1488108..1488782
location: region:1488108-1488782:1
so has part: feature:1488108-1488782:1:exon

XP_043539630.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1488108-1488782:1:exon

LOC122544459
type: Gene
subclass of: SO_0000704
RO_0002162: 36176
gene: LOC122544459
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1494795..1502883
location: region:1494795-1502883:1
so has part: feature:1494795-1502883:1:exon
subclass of: SO_0000010

122544459
type: Gene
SIO_000068: ncbigene

position:1494795:1
position: 1494795
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1502883:1
position: 1502883
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1494795-1502883:1:exon

LOC122544459
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 36176
gene: LOC122544459
product: NFATC2-interacting protein-like
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_043683696.1
SIO_010081: LOC122544459
subclass of: SO_0000673
so part of: LOC122544459
location: join(1494795..1494943,1502471..1502883)
location: region:1494795-1502883:1
so has part: feature:1494795-1494943:1:exon
so has part: feature:1502471-1502883:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1494795-1494943:1:exon

position:1494943:1
position: 1494943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1502471-1502883:1:exon

position:1502471:1
position: 1502471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC122544459
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 36176
gene: LOC122544459
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: NFATC2-interacting protein-like
translation: MSEYPAQPTDGQDKICLRVRGVERNSFQDITIGKTESLKRLMEDYKERMALQRCRLTFHFDGAELSETSTPQDNEMENDDVIDVWICS
SIO_010081: LOC122544459
subclass of: SO_0000673
so part of: LOC122544459
location: join(1494842..1494943,1502471..1502635)
location: region:1494842-1502635:1
so has part: feature:1494842-1494943:1:exon
so has part: feature:1502471-1502635:1:exon

XP_043539631.1
type: Protein
SIO_000068: ncbiprotein

position:1494842:1
position: 1494842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1502635:1
position: 1502635
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1494842-1494943:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1502471-1502635:1:exon

LOC122544460
type: Gene
subclass of: SO_0000704
RO_0002162: 36176
gene: LOC122544460
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2385796..2393014)
location: region:2385796-2393014:-1
so has part: feature:2385796-2393014:-1:exon
subclass of: SO_0000010

122544460
type: Gene
SIO_000068: ncbigene

position:2385796:-1
position: 2385796
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2393014:-1
position: 2393014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2385796-2393014:-1:exon

LOC122544460
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 36176
gene: LOC122544460
product: zinc finger protein 229-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 66 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
transcript id: XM_043683697.1
SIO_010081: LOC122544460
subclass of: SO_0000673
so part of: LOC122544460
location: complement(join(2385796..2388562,2392921..2393014))
location: region:2385796-2393014:-1
so has part: feature:2392921-2393014:-1:exon
so has part: feature:2385796-2388562:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2392921-2393014:-1:exon

position:2392921:-1
position: 2392921
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2385796-2388562:-1:exon

position:2388562:-1
position: 2388562
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC122544460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 36176
gene: LOC122544460
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein 229-like
translation: MDKPWKCGHCGKGFYYPSALEIHERRHTGERPFTCFVCEKGFSAISNLLTHQKVHAVERPLNSNSGKGLADTSTAVTRKQVHTQKKIFPCSDCEKEFTSSANLLRHKRVHTGERPYTCCECGKGFAQSSGLVIHQRIHTGERPFVCSQCGKGFTDSHTLLQHERVHTGERPFVCSQCGKGFTQLSNLQAHQRVHTGERPFTCSQCEKGFTHLSSLQVHQRVHTGERPFTCSQCGKGFSRLSSLQKHQRVHTGERPFICSQCGKGFTQLSNLQRHQRVHTRERSFSCCQCGKGFTQSLHLQEHQRIHTGERPFSCTQCGKEFTCSSRLQRHQRVHTRERSFNCSVCGRGFTQSSHLQAHQRVHTGERPFACSQCGKGFTCSSHLQRHQRVHTGEKLFSCSQCGKGFSQLSNLQAHQRVHTGERPFACSQCGKGFSHLSNLQRHQRVHTGERPFTCSQCGKGFTQLSSLQKHQRDHH
SIO_010081: LOC122544460
subclass of: SO_0000673
so part of: LOC122544460
location: complement(2386787..2388214)
location: region:2386787-2388214:-1
so has part: feature:2386787-2388214:-1:exon

XP_043539632.1
type: Protein
SIO_000068: ncbiprotein

position:2386787:-1
position: 2386787
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2388214:-1
position: 2388214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2386787-2388214:-1:exon

LOC122544461
type: Gene
subclass of: SO_0000704
RO_0002162: 36176
gene: LOC122544461
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2553890..2557954)
location: region:2553890-2557954:-1
so has part: feature:2553890-2557954:-1:exon
subclass of: SO_0000010

122544461
type: Gene
SIO_000068: ncbigene

position:2553890:-1
position: 2553890
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2557954:-1
position: 2557954
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2553890-2557954:-1:exon

LOC122544461
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 36176
gene: LOC122544461
product: zinc finger protein 239-like
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_043683698.1
SIO_010081: LOC122544461
subclass of: SO_0000673
so part of: LOC122544461
location: complement(join(2553890..2556270,2557755..2557954))
location: region:2553890-2557954:-1
so has part: feature:2557755-2557954:-1:exon
so has part: feature:2553890-2556270:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2557755-2557954:-1:exon

position:2557755:-1
position: 2557755
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2553890-2556270:-1:exon

position:2556270:-1
position: 2556270
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC122544461
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 36176
gene: LOC122544461
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein 239-like
translation: MNKSWKCGHCRKGFHYPSAFEIHEHRHTGERPFICFLCEKGFSAISNLLTVQQVHAVGRPFMSDCRKGLADISTQLTHKLIHTWKKVFPCLDCAKGFTNSANLLRHKQVHTRERPYTCCECGKGFAQSSGLVIHQRIHTGERPFSCSQCGKGFTDSHTLLQHERVHTGERPFVCSQCGRGFTQLSNLQAHQRVHTGERPFTCSQCGKGFTQSSHLQVHQRVHTGERPFTCSQCGKGFTCSSHLQAHQRVHTREKPFICSLCGKGFSHLSNLQTHQQVHTGERPYACSQCGKEFTRLSNLQRHQRVHTGERPFTCSQCGKGFSHLSNLQAHQRVHTGERPFTCFQCGKGFTQLSNLKRHQRVHTGERPFTCSRCAKGFTRLSSLQEHQRVHK
SIO_010081: LOC122544461
subclass of: SO_0000673
so part of: LOC122544461
location: complement(2554762..2555937)
location: region:2554762-2555937:-1
so has part: feature:2554762-2555937:-1:exon

XP_043539633.1
type: Protein
SIO_000068: ncbiprotein

position:2554762:-1
position: 2554762
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2555937:-1
position: 2555937
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2554762-2555937:-1:exon

LOC122544469
type: Gene
subclass of: SO_0000704
RO_0002162: 36176
gene: LOC122544469
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2708662..2709117)
location: region:2708662-2709117:-1
so has part: feature:2708662-2709117:-1:exon
subclass of: SO_0000010

122544469
type: Gene
SIO_000068: ncbigene

position:2708662:-1
position: 2708662
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2709117:-1
position: 2709117
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2708662-2709117:-1:exon

LOC122544469
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 36176
gene: LOC122544469
product: cardiotrophin-2-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
transcript id: XM_043683707.1
SIO_010081: LOC122544469
subclass of: SO_0000673
so part of: LOC122544469
location: complement(2708662..2709117)
location: region:2708662-2709117:-1
so has part: feature:2708662-2709117:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2708662-2709117:-1:exon

LOC122544469
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 36176
gene: LOC122544469
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cardiotrophin-2-like
translation: MGLPFSDPGFSLQDVTLVGLYSPSIGYLAWRRLTDTERLSETYRAYSLQLEYLQVVLDDLQTLGLGQGHSRLTEQLTFTRTQLQSLVSNLRSLLEALAQPLPVIDKPLDSEANGASDFKRKLRGYFVCREYAHWVKRTLRDFTLLSDRFPA
SIO_010081: LOC122544469
subclass of: SO_0000673
so part of: LOC122544469
location: complement(2708662..2709117)
location: region:2708662-2709117:-1
so has part: feature:2708662-2709117:-1:exon

XP_043539642.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2708662-2709117:-1:exon

LOC122544478
type: Gene
subclass of: SO_0000704
RO_0002162: 36176
gene: LOC122544478
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3186360..3201704
location: region:3186360-3201704:1
so has part: feature:3186360-3201704:1:exon
subclass of: SO_0000011

122544478
type: Gene
SIO_000068: ncbigene

position:3186360:1
position: 3186360
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3201704:1
position: 3201704
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3186360-3201704:1:exon

LOC122544478
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 36176
nc RNA class: lncRNA
gene: LOC122544478
product: uncharacterized LOC122544478
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
transcript id: XR_006310356.1
SIO_010081: LOC122544478
subclass of: SO_0000673
so part of: LOC122544478
location: join(3186360..3186394,3190506..3190509,3201641..3201704)
location: region:3186360-3201704:1
so has part: feature:3186360-3186394:1:exon
so has part: feature:3190506-3190509:1:exon
so has part: feature:3201641-3201704:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3186360-3186394:1:exon

position:3186394:1
position: 3186394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3190506-3190509:1:exon

position:3190506:1
position: 3190506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3190509:1
position: 3190509
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3201641-3201704:1:exon

position:3201641:1
position: 3201641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC122544472
type: Gene
subclass of: SO_0000704
RO_0002162: 36176
gene: LOC122544472
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4977807..4980393
location: region:4977807-4980393:1
so has part: feature:4977807-4980393:1:exon
subclass of: SO_0000010

122544472
type: Gene
SIO_000068: ncbigene

position:4977807:1
position: 4977807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4980393:1
position: 4980393
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4977807-4980393:1:exon

LOC122544472
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 36176
gene: LOC122544472
product: probable G-protein coupled receptor 139
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
transcript id: XM_043683709.1
SIO_010081: LOC122544472
subclass of: SO_0000673
so part of: LOC122544472
location: join(4977807..4977876,4979483..4980393)
location: region:4977807-4980393:1
so has part: feature:4977807-4977876:1:exon
so has part: feature:4979483-4980393:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4977807-4977876:1:exon

position:4977876:1
position: 4977876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4979483-4980393:1:exon

position:4979483:1
position: 4979483
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC122544472
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 36176
gene: LOC122544472
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: probable G-protein coupled receptor 139
translation: MHEPTIAPVFAILYPILAIVGVPANLLVIIILSRGQCGLSQCITYYLVAIAVADVLFIITGCVLNRIVRKYFINSVLSTTPGCSLSTVLVYATQDSSVWLTVAFTFDRFVAICSQRMKNRYCTEKTATMVVGIVCALSCITNVPLYFVYKPLFTMDSVPWFCAVQDTFYTSSIWKAYHWLDQILTPFLPFFLILLFNILTIRHIKVASRARKRLCSTRLGEDTELASRKRSIVLLFAISLSFLLLWATYVGHFLYVRVTGERYITSMDFNDPEYIFQEMTNLLQLLSSCNNVFIYVVSQNKFQEETKKLLLSPIKMFAVFFKVYHQ
SIO_010081: LOC122544472
subclass of: SO_0000673
so part of: LOC122544472
location: join(4977807..4977876,4979483..4980393)
location: region:4977807-4980393:1
so has part: feature:4977807-4977876:1:exon
so has part: feature:4979483-4980393:1:exon

XP_043539644.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4977807-4977876:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4979483-4980393:1:exon

LOC122544476
type: Gene
subclass of: SO_0000704
RO_0002162: 36176
gene: LOC122544476
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5255426..5265335)
location: region:5255426-5265335:-1
so has part: feature:5255426-5265335:-1:exon
subclass of: SO_0000011

122544476
type: Gene
SIO_000068: ncbigene

position:5255426:-1
position: 5255426
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5265335:-1
position: 5265335
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5255426-5265335:-1:exon

LOC122544476
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 36176
nc RNA class: lncRNA
gene: LOC122544476
product: uncharacterized LOC122544476
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_006310355.1
SIO_010081: LOC122544476
subclass of: SO_0000673
so part of: LOC122544476
location: complement(join(5255426..5255633,5264081..5264238,5265003..5265080,5265301..5265335))
location: region:5255426-5265335:-1
so has part: feature:5265301-5265335:-1:exon
so has part: feature:5265003-5265080:-1:exon
so has part: feature:5264081-5264238:-1:exon
so has part: feature:5255426-5255633:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5265301-5265335:-1:exon

position:5265301:-1
position: 5265301
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5265003-5265080:-1:exon

position:5265003:-1
position: 5265003
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5265080:-1
position: 5265080
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5264081-5264238:-1:exon

position:5264081:-1
position: 5264081
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5264238:-1
position: 5264238
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5255426-5255633:-1:exon

position:5255633:-1
position: 5255633
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC122544473
type: Gene
subclass of: SO_0000704
RO_0002162: 36176
gene: LOC122544473
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5496759..5497214
location: region:5496759-5497214:1
so has part: feature:5496759-5497214:1:exon
subclass of: SO_0000010

122544473
type: Gene
SIO_000068: ncbigene

position:5496759:1
position: 5496759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5497214:1
position: 5497214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5496759-5497214:1:exon

LOC122544473
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 36176
gene: LOC122544473
product: cardiotrophin-2-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
transcript id: XM_043683710.1
SIO_010081: LOC122544473
subclass of: SO_0000673
so part of: LOC122544473
location: 5496759..5497214
location: region:5496759-5497214:1
so has part: feature:5496759-5497214:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5496759-5497214:1:exon

LOC122544473
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 36176
gene: LOC122544473
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cardiotrophin-2-like
translation: MGLPFSEPGFRLPEVTLVGLPSSSIGYLAWRGLTDSERLAVNYRAYSLQLEYLQLVLDDLQALGLGRGPGQLTEQLTFTQTQLQGLVANLRSLLEALAQPLPTLGEPLDSEAYGSSDFERKLRGYIVCREYARWIKRTLRDLTLLSNSFPA
SIO_010081: LOC122544473
subclass of: SO_0000673
so part of: LOC122544473
location: 5496759..5497214
location: region:5496759-5497214:1
so has part: feature:5496759-5497214:1:exon

XP_043539645.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5496759-5497214:1:exon

LOC122544477
type: Gene
subclass of: SO_0000704
RO_0002162: 36176
gene: LOC122544477
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5926197..5934263
location: region:5926197-5934263:1
so has part: feature:5926197-5934263:1:exon
subclass of: SO_0000010

122544477
type: Gene
SIO_000068: ncbigene

position:5926197:1
position: 5926197
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5934263:1
position: 5934263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5926197-5934263:1:exon

LOC122544477
type: Variable Segment
subclass of: SO_0000466
RO_0002162: 36176
gene: LOC122544477
standard name: Ig kappa chain V region Mem5-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
SIO_010081: LOC122544477
subclass of: SO_0000673
so part of: LOC122544477
location: join(5926197..5926288,5926475..5926770,5927321..5927360,5933935..5934263)
location: region:5926197-5934263:1
so has part: feature:5926197-5926288:1:exon
so has part: feature:5926475-5926770:1:exon
so has part: feature:5927321-5927360:1:exon
so has part: feature:5933935-5934263:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5926197-5926288:1:exon

position:5926288:1
position: 5926288
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5926475-5926770:1:exon

position:5926475:1
position: 5926475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5926770:1
position: 5926770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5927321-5927360:1:exon

position:5927321:1
position: 5927321
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5927360:1
position: 5927360
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5933935-5934263:1:exon

position:5933935:1
position: 5933935
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC122544477
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 36176
gene: LOC122544477
exception: rearrangement required for product
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: Ig kappa chain V region Mem5-like
SIO_010081: LOC122544477
subclass of: SO_0000673
so part of: LOC122544477
location: join(5926240..5926288,5926475..5926770,5927321..5927360,5933935..5934263)
location: region:5926240-5934263:1
so has part: feature:5926240-5926288:1:exon
so has part: feature:5926475-5926770:1:exon
so has part: feature:5927321-5927360:1:exon
so has part: feature:5933935-5934263:1:exon

position:5926240:1
position: 5926240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5926240-5926288:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5926475-5926770:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5927321-5927360:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5933935-5934263:1:exon

LOC122544474
type: Gene
subclass of: SO_0000704
RO_0002162: 36176
gene: LOC122544474
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 9205675..9205906
location: region:9205675-9205906:1
so has part: feature:9205675-9205906:1:exon

122544474
type: Gene
SIO_000068: ncbigene

position:9205675:1
position: 9205675
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9205906:1
position: 9205906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9205675-9205906:1:exon

LOC122544474
type: Exon
subclass of: SO_0000147
RO_0002162: 36176
gene: LOC122544474
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
pseudo: true
SIO_010081: LOC122544474
subclass of: SO_0000673
so part of: LOC122544474
location: 9205675..9205906
location: region:9205675-9205906:1
so has part: feature:9205675-9205906:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9205675-9205906:1:exon

LOC122544462
type: Gene
subclass of: SO_0000704
RO_0002162: 36176
gene: LOC122544462
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 9650351..9724821
location: region:9650351-9724821:1
so has part: feature:9650351-9724821:1:exon
subclass of: SO_0000010

122544462
type: Gene
SIO_000068: ncbigene

position:9650351:1
position: 9650351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9724821:1
position: 9724821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9650351-9724821:1:exon

LOC122544462
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 36176
gene: LOC122544462
product: NACHT, LRR and PYD domains-containing protein 3-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_043683699.1
SIO_010081: LOC122544462
subclass of: SO_0000673
so part of: LOC122544462
location: join(9650351..9650445,9671157..9671252,9690368..9690534,9696510..9696681,9696779..9696844,9713616..9715344,9718512..9718598,9718805..9718975,9719147..9719317,9719854..9720021,9720189..9720264,9724228..9724821)
location: region:9650351-9724821:1
so has part: feature:9650351-9650445:1:exon
so has part: feature:9671157-9671252:1:exon
so has part: feature:9690368-9690534:1:exon
so has part: feature:9696510-9696681:1:exon
so has part: feature:9696779-9696844:1:exon
so has part: feature:9713616-9715344:1:exon
so has part: feature:9718512-9718598:1:exon
so has part: feature:9718805-9718975:1:exon
so has part: feature:9719147-9719317:1:exon
so has part: feature:9719854-9720021:1:exon
so has part: feature:9720189-9720264:1:exon
so has part: feature:9724228-9724821:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9650351-9650445:1:exon

position:9650445:1
position: 9650445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:9671157-9671252:1:exon

position:9671157:1
position: 9671157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9671252:1
position: 9671252
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:9690368-9690534:1:exon

position:9690368:1
position: 9690368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9690534:1
position: 9690534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:9696510-9696681:1:exon

position:9696510:1
position: 9696510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9696681:1
position: 9696681
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:9696779-9696844:1:exon

position:9696779:1
position: 9696779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9696844:1
position: 9696844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:9713616-9715344:1:exon

position:9713616:1
position: 9713616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9715344:1
position: 9715344
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:9718512-9718598:1:exon

position:9718512:1
position: 9718512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9718598:1
position: 9718598
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:9718805-9718975:1:exon

position:9718805:1
position: 9718805
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9718975:1
position: 9718975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:9719147-9719317:1:exon

position:9719147:1
position: 9719147
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9719317:1
position: 9719317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:9719854-9720021:1:exon

position:9719854:1
position: 9719854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9720021:1
position: 9720021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:9720189-9720264:1:exon

position:9720189:1
position: 9720189
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9720264:1
position: 9720264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:9724228-9724821:1:exon

position:9724228:1
position: 9724228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC122544462
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 36176
gene: LOC122544462
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: NACHT, LRR and PYD domains-containing protein 3-like
translation: MAEGPNREEDPVSSTEVDIDTDPNSTIMKFLVKCEDYQLFQFTKFFWDRLEQAIKDCVGGLSSLLTYERIFSGQEHQKIIELVEKHMCADSSKLLLNLVMEKGSPARRVMWKSFVKMRHVVPKLDKILKQIQELGLNPFDTVKLTQSLSKIPNHLKVLQQKHKETLQIQTETLRVNTIQIKEKVKTFQLVDRYAELTIISTVRDRTLVEHELLARGRDHEEWREKHLWRELEKIQTDQLFQSNFSQKKFTSGRTVAVSGVPGIGKTTMLQKIVYDWATGKIYQHFQFVFYFKFRDLNTINCSINLKNLILEQYPYFQNVLGNLWKNPENLLFIFDSLDEFRERIDFSDNLRPQSVCTDPEYWCEVSDIVYSLIQHKLLPGCSVLVTTRPTDLVLLEKAEISMWAEILGFADDDRKEYFNKFFEDQTVAAAIYNHLKENEILYTMSYNPSYCWILCLSLGPFLAQCDRKEQKVPKTITQLYSYYIYNILKHHGREIENPRGVLLKLGEMAFKGISEKKIVFRNGELIQYDLQPSQFLSGFLMELLERDDSVQSVIYTFPHLTIQEFVAALAQFLTPDPTDIQKLLSIAYSEADGRYQIFLRFVIGLTSPQSACPLEEFLGPFLHQTTCRVIDWVKEMAEGQVRNTRSNTGKRDFLNILQYLFESQNKALVWTTVRSMETLAFSRLQLTPVDCFVLSHVIGLCETIKLLDLENCYIQHEGLQRLASVLYKCRELRLRNNDLGNPAVKLLSEALRSSDCQIEKLQLNDNDLTASCAQDLASALSTNQSLISLNLGENKLGDFGVKQLFGVLRNVNCKLQELVLHDNHLSHSCIEDLTYALITNQSLTVLNLGNNKLGDTGVKLLSVALNNPTCKILELGLWGASLSDSCTKDLACALSTNQTLTTLKLGTNLFTDQSVPAISHLILNCRSLERIELWENQFTPTGKRHLESMRESRRKLKADVKWIFQV
SIO_010081: LOC122544462
subclass of: SO_0000673
so part of: LOC122544462
location: join(9671189..9671252,9690368..9690534,9696510..9696681,9696779..9696844,9713616..9715344,9718512..9718598,9718805..9718975,9719147..9719317,9719854..9720021,9720189..9720264,9724228..9724257)
location: region:9671189-9724257:1
so has part: feature:9671189-9671252:1:exon
so has part: feature:9690368-9690534:1:exon
so has part: feature:9696510-9696681:1:exon
so has part: feature:9696779-9696844:1:exon
so has part: feature:9713616-9715344:1:exon
so has part: feature:9718512-9718598:1:exon
so has part: feature:9718805-9718975:1:exon
so has part: feature:9719147-9719317:1:exon
so has part: feature:9719854-9720021:1:exon
so has part: feature:9720189-9720264:1:exon
so has part: feature:9724228-9724257:1:exon

XP_043539634.1
type: Protein
SIO_000068: ncbiprotein

position:9671189:1
position: 9671189
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9724257:1
position: 9724257
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9671189-9671252:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:9690368-9690534:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:9696510-9696681:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:9696779-9696844:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:9713616-9715344:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:9718512-9718598:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:9718805-9718975:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:9719147-9719317:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:9719854-9720021:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:9720189-9720264:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:9724228-9724257:1:exon

LOC122544463
type: Gene
subclass of: SO_0000704
RO_0002162: 36176
gene: LOC122544463
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 9823037..9830281
location: region:9823037-9830281:1
so has part: feature:9823037-9830281:1:exon
subclass of: SO_0000010

122544463
type: Gene
SIO_000068: ncbigene

position:9823037:1
position: 9823037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9830281:1
position: 9830281
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9823037-9830281:1:exon

LOC122544463
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 36176
gene: LOC122544463
product: actin, alpha cardiac muscle 1-like
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_043683700.1
SIO_010081: LOC122544463
subclass of: SO_0000673
so part of: LOC122544463
location: join(9823037..9823145,9825267..9825407,9827158..9827482,9827983..9828144,9828241..9828432,9829067..9829248,9829737..9830281)
location: region:9823037-9830281:1
so has part: feature:9823037-9823145:1:exon
so has part: feature:9825267-9825407:1:exon
so has part: feature:9827158-9827482:1:exon
so has part: feature:9827983-9828144:1:exon
so has part: feature:9828241-9828432:1:exon
so has part: feature:9829067-9829248:1:exon
so has part: feature:9829737-9830281:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9823037-9823145:1:exon

position:9823145:1
position: 9823145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:9825267-9825407:1:exon

position:9825267:1
position: 9825267
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9825407:1
position: 9825407
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:9827158-9827482:1:exon

position:9827158:1
position: 9827158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9827482:1
position: 9827482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:9827983-9828144:1:exon

position:9827983:1
position: 9827983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9828144:1
position: 9828144
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:9828241-9828432:1:exon

position:9828241:1
position: 9828241
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9828432:1
position: 9828432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:9829067-9829248:1:exon

position:9829067:1
position: 9829067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9829248:1
position: 9829248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:9829737-9830281:1:exon

position:9829737:1
position: 9829737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC122544463
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 36176
gene: LOC122544463
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: actin, alpha cardiac muscle 1-like
translation: MCDDEETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF
SIO_010081: LOC122544463
subclass of: SO_0000673
so part of: LOC122544463
location: join(9825279..9825407,9827158..9827482,9827983..9828144,9828241..9828432,9829067..9829248,9829737..9829880)
location: region:9825279-9829880:1
so has part: feature:9825279-9825407:1:exon
so has part: feature:9827158-9827482:1:exon
so has part: feature:9827983-9828144:1:exon
so has part: feature:9828241-9828432:1:exon
so has part: feature:9829067-9829248:1:exon
so has part: feature:9829737-9829880:1:exon

XP_043539635.1
type: Protein
SIO_000068: ncbiprotein

position:9825279:1
position: 9825279
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9829880:1
position: 9829880
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9825279-9825407:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:9827158-9827482:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:9827983-9828144:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:9828241-9828432:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:9829067-9829248:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:9829737-9829880:1:exon

LOC122544465
type: Gene
subclass of: SO_0000704
RO_0002162: 36176
gene: LOC122544465
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 9862695..9892444
location: region:9862695-9892444:1
so has part: feature:9862695-9892444:1:exon
subclass of: SO_0000010

122544465
type: Gene
SIO_000068: ncbigene

position:9862695:1
position: 9862695
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9892444:1
position: 9892444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9862695-9892444:1:exon

LOC122544465
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 36176
gene: LOC122544465
product: uncharacterized LOC122544465
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
transcript id: XM_043683704.1
SIO_010081: LOC122544465
subclass of: SO_0000673
so part of: LOC122544465
location: join(9862695..9863719,9884673..9884779,9891529..9891739,9892243..9892444)
location: region:9862695-9892444:1
so has part: feature:9862695-9863719:1:exon
so has part: feature:9884673-9884779:1:exon
so has part: feature:9891529-9891739:1:exon
so has part: feature:9892243-9892444:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9862695-9863719:1:exon

position:9863719:1
position: 9863719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:9884673-9884779:1:exon

position:9884673:1
position: 9884673
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9884779:1
position: 9884779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:9891529-9891739:1:exon

position:9891529:1
position: 9891529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9891739:1
position: 9891739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:9892243-9892444:1:exon

position:9892243:1
position: 9892243
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC122544465
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 36176
gene: LOC122544465
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC122544465
translation: MLRSARHMSLCFVTWRVSQCSSCFLSDRGVSVSSCCCCCCCLSVHPAACLELRTVTVSPCGPCEQSVTMTDVMINSCKASAEEMGLKHDDNRLPFQIFPDPCDSYEGQCKLKDRLPSIVVEPTDVSEVESGELRWPPEEFLMAEQGGEGEGLVPQAGELAQIDTEPVSQEMKTQKNVEPGQSLSSNTQLFSSTLIQPGQTFTK
SIO_010081: LOC122544465
subclass of: SO_0000673
so part of: LOC122544465
location: join(9863539..9863719,9884673..9884779,9891529..9891739,9892243..9892355)
location: region:9863539-9892355:1
so has part: feature:9863539-9863719:1:exon
so has part: feature:9884673-9884779:1:exon
so has part: feature:9891529-9891739:1:exon
so has part: feature:9892243-9892355:1:exon

XP_043539639.1
type: Protein
SIO_000068: ncbiprotein

position:9863539:1
position: 9863539
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9892355:1
position: 9892355
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9863539-9863719:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:9884673-9884779:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:9891529-9891739:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:9892243-9892355:1:exon

cskmt
type: Gene
subclass of: SO_0000704
RO_0002162: 36176
gene: cskmt
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(9893985..9898020)
location: region:9893985-9898020:-1
so has part: feature:9893985-9898020:-1:exon
subclass of: SO_0000010

122544475
type: Gene
SIO_000068: ncbigene

position:9893985:-1
position: 9893985
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9898020:-1
position: 9898020
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9893985-9898020:-1:exon

cskmt
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 36176
gene: cskmt
product: citrate synthase lysine methyltransferase
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_043683712.1
SIO_010081: cskmt
subclass of: SO_0000673
so part of: cskmt
location: complement(join(9893985..9894599,9895228..9895812,9898002..9898020))
location: region:9893985-9898020:-1
so has part: feature:9898002-9898020:-1:exon
so has part: feature:9895228-9895812:-1:exon
so has part: feature:9893985-9894599:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9898002-9898020:-1:exon

position:9898002:-1
position: 9898002
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:9895228-9895812:-1:exon

position:9895228:-1
position: 9895228
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9895812:-1
position: 9895812
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:9893985-9894599:-1:exon

position:9894599:-1
position: 9894599
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

cskmt
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 36176
gene: cskmt
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: citrate synthase-lysine N-methyltransferase CSKMT, mitochondrial
translation: MTGSPVKYGRKVIVPKSIGQEDFSILSKCQCRSDGLNGLLKVSGLCVSENSVSIVLADYLFTDLQKQTTWDTIYQRSQGQPFQYFDWFLGYSSLRGLILQLLQDMESEAPLKLLDIGCGTSELGPRLYCECPFPLHVYCVDFSPIALAIMRAQFSLLPLPVSPASQLHFVQMDIGNLSGFQQQSFDLILDKGTLDALLRADDGGEAARCALTQSLGMLRPGGSMLQISDEDPDVRIVWLESLCLATVTALEVDTEKNAGYFAYIIKPTSMSTWR
SIO_010081: cskmt
subclass of: SO_0000673
so part of: cskmt
location: complement(join(9894379..9894599,9895228..9895812,9898002..9898020))
location: region:9894379-9898020:-1
so has part: feature:9898002-9898020:-1:exon
so has part: feature:9895228-9895812:-1:exon
so has part: feature:9894379-9894599:-1:exon

XP_043539647.1
type: Protein
SIO_000068: ncbiprotein

position:9894379:-1
position: 9894379
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9898002-9898020:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:9895228-9895812:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:9894379-9894599:-1:exon

LOC122544466
type: Gene
subclass of: SO_0000704
RO_0002162: 36176
gene: LOC122544466
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 9928009..9930648
location: region:9928009-9930648:1
so has part: feature:9928009-9930648:1:exon
subclass of: SO_0000011

122544466
type: Gene
SIO_000068: ncbigene

position:9928009:1
position: 9928009
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9930648:1
position: 9930648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9928009-9930648:1:exon

LOC122544466
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 36176
nc RNA class: lncRNA
gene: LOC122544466
product: uncharacterized LOC122544466
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XR_006310354.1
SIO_010081: LOC122544466
subclass of: SO_0000673
so part of: LOC122544466
location: join(9928009..9928081,9929558..9929645,9930119..9930648)
location: region:9928009-9930648:1
so has part: feature:9928009-9928081:1:exon
so has part: feature:9929558-9929645:1:exon
so has part: feature:9930119-9930648:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9928009-9928081:1:exon

position:9928081:1
position: 9928081
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:9929558-9929645:1:exon

position:9929558:1
position: 9929558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9929645:1
position: 9929645
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:9930119-9930648:1:exon

position:9930119:1
position: 9930119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC122544464
type: Gene
subclass of: SO_0000704
RO_0002162: 36176
gene: LOC122544464
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(9931484..9937943)
location: region:9931484-9937943:-1
so has part: feature:9931484-9937943:-1:exon
subclass of: SO_0000010

122544464
type: Gene
SIO_000068: ncbigene

position:9931484:-1
position: 9931484
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9937943:-1
position: 9937943
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9931484-9937943:-1:exon

LOC122544464
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 36176
gene: LOC122544464
product: uncharacterized LOC122544464, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_006310353.1
SIO_010081: LOC122544464
so part of: LOC122544464
location: complement(join(9931484..9932029,9936867..9937943))
location: region:9931484-9937943:-1
so has part: feature:9936867-9937943:-1:exon
so has part: feature:9931484-9932029:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9936867-9937943:-1:exon

position:9936867:-1
position: 9936867
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:9931484-9932029:-1:exon

position:9932029:-1
position: 9932029
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC122544464
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 36176
gene: LOC122544464
product: uncharacterized LOC122544464, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_006310352.1
SIO_010081: LOC122544464
so part of: LOC122544464
location: complement(join(9931484..9932029,9932222..9932404,9936867..9937943))
location: region:9931484-9937943:-1
so has part: feature:9936867-9937943:-1:exon
so has part: feature:9932222-9932404:-1:exon
so has part: feature:9931484-9932029:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9936867-9937943:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:9932222-9932404:-1:exon

position:9932222:-1
position: 9932222
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9932404:-1
position: 9932404
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:9931484-9932029:-1:exon

LOC122544464
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 36176
gene: LOC122544464
product: uncharacterized LOC122544464, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_006310351.1
SIO_010081: LOC122544464
so part of: LOC122544464
location: complement(join(9932036..9932404,9936867..9937943))
location: region:9932036-9937943:-1
so has part: feature:9936867-9937943:-1:exon
so has part: feature:9932036-9932404:-1:exon

position:9932036:-1
position: 9932036
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9936867-9937943:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:9932036-9932404:-1:exon

LOC122544464
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 36176
gene: LOC122544464
product: uncharacterized LOC122544464, transcript variant X1
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_043683701.1
SIO_010081: LOC122544464
subclass of: SO_0000673
so part of: LOC122544464
location: complement(join(9932595..9935600,9936867..9937943))
location: region:9932595-9937943:-1
so has part: feature:9936867-9937943:-1:exon
so has part: feature:9932595-9935600:-1:exon

position:9932595:-1
position: 9932595
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9936867-9937943:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:9932595-9935600:-1:exon

position:9935600:-1
position: 9935600
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC122544464
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 36176
gene: LOC122544464
product: uncharacterized LOC122544464, transcript variant X2
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_043683703.1
SIO_010081: LOC122544464
subclass of: SO_0000673
so part of: LOC122544464
location: complement(join(9932595..9935600,9937813..9937884))
location: region:9932595-9937884:-1
so has part: feature:9937813-9937884:-1:exon
so has part: feature:9932595-9935600:-1:exon

position:9937884:-1
position: 9937884
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9937813-9937884:-1:exon

position:9937813:-1
position: 9937813
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:9932595-9935600:-1:exon

LOC122544464
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 36176
gene: LOC122544464
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC122544464 isoform X1
translation: MRDECLPAMKMQVEEVSEYPNLHPHDLLLFVFAIMTCLLIIQALPSITMKRKQQREKVDHKRVHFVPSQSRYTTSSLNKSVWFSAFSHSQARACDHLFTRSQTLIKGQLTTLSVLLLPRLSLPSLFPIQMTAATEYLFPQTETQPKDKSLSSLNTQGDSAQCSFIVPSGSCSILPRNGSLASVSLDVQPSIPLPNVNLSLDCQVDQRLKSPCVSAERRVSRESNTNYNGYPEKCSVPHCLISPHTPQSVMEPRLNPGFSSVSDSNSLGACLVNYTIEENKTLSSPPHLTQALGMWAPVVRESQPFHQTSNFWSCLQDKPPKPNSSLKGLTGQNGEVRLTTPQPEVTTAWLVGQPKSSIGEYSVWLRITTRISEQNRWHPKTVENDNSCLISHLTGLLRPEFNTNKNHSVNQTSSLTSVPRHCQNARVLSAPSLSASNLEWKSEPPFGTPNHMRSTKCDDFVEIPLDEIFPPNPKTIPEKKAWSGFSEPMLELWTKILPSIFDCFHVPVMDKLRAPVKKNLTTASSHTLNVKVESETPGTGTGLDTGHVWGKILKVSRSSHEPLPWGKAVADLLIKKCLNQLRFLKMTSPLLSEEQSGMASYQL
SIO_010081: LOC122544464
subclass of: SO_0000673
so part of: LOC122544464
location: complement(join(9933865..9935600,9936867..9936942))
location: region:9933865-9936942:-1
so has part: feature:9936867-9936942:-1:exon
so has part: feature:9933865-9935600:-1:exon

XP_043539636.1
type: Protein
SIO_000068: ncbiprotein

position:9933865:-1
position: 9933865
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9936942:-1
position: 9936942
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9936867-9936942:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:9933865-9935600:-1:exon

LOC122544464
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 36176
gene: LOC122544464
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC122544464 isoform X2
translation: MTCLLIIQALPSITMKRKQQREKVDHKRVHFVPSQSRYTTSSLNKSVWFSAFSHSQARACDHLFTRSQTLIKGQLTTLSVLLLPRLSLPSLFPIQMTAATEYLFPQTETQPKDKSLSSLNTQGDSAQCSFIVPSGSCSILPRNGSLASVSLDVQPSIPLPNVNLSLDCQVDQRLKSPCVSAERRVSRESNTNYNGYPEKCSVPHCLISPHTPQSVMEPRLNPGFSSVSDSNSLGACLVNYTIEENKTLSSPPHLTQALGMWAPVVRESQPFHQTSNFWSCLQDKPPKPNSSLKGLTGQNGEVRLTTPQPEVTTAWLVGQPKSSIGEYSVWLRITTRISEQNRWHPKTVENDNSCLISHLTGLLRPEFNTNKNHSVNQTSSLTSVPRHCQNARVLSAPSLSASNLEWKSEPPFGTPNHMRSTKCDDFVEIPLDEIFPPNPKTIPEKKAWSGFSEPMLELWTKILPSIFDCFHVPVMDKLRAPVKKNLTTASSHTLNVKVESETPGTGTGLDTGHVWGKILKVSRSSHEPLPWGKAVADLLIKKCLNQLRFLKMTSPLLSEEQSGMASYQL
SIO_010081: LOC122544464
subclass of: SO_0000673
so part of: LOC122544464
location: complement(9933865..9935574)
location: region:9933865-9935574:-1
so has part: feature:9933865-9935574:-1:exon

XP_043539638.1
type: Protein
SIO_000068: ncbiprotein

position:9935574:-1
position: 9935574
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9933865-9935574:-1:exon