Chiloscyllium plagiosum isolate BGI_BamShark_2017 chromosome 47, ASM401019v2, whole genome shotgun sequence.
Chiloscyllium plagiosum (whitespotted bambooshark)
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Orectolobiformes; Hemiscylliidae; Chiloscyllium.
REFSEQ INFORMATION: The reference sequence is identical to\nCM013002.1.\nAssembly name: ASM401019v2\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the BGI on 2019/01/10. The\noriginal whole-genome shotgun project has the accession\nQPFF00000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: BGI\nAssembly Method :: platanus v. 1.2.4; 3ddna v. 170123\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 280.0x\nSequencing Technology :: BGIseq-500\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Chiloscyllium plagiosum Annotation\n Release 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##
Derived by automated computational analysis using gene prediction method: Gnomon.
DNA-binding death effector domain-containing protein 2-like
COORDINATES: polyA evidence [ECO:0006239]
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
uncharacterized LOC122544155, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
uncharacterized LOC122544155, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
phospholipase A2 inhibitor 25 kDa subunit-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 90% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:12.0:RF00003
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 Proteins
zinc finger protein 664-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
zinc finger protein 664-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
zinc finger protein 664-like, transcript variant X4
zinc finger protein 664-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
zinc finger protein 501-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
zinc finger protein 501-like, transcript variant X1
zinc finger protein 239-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 31 samples with support for all annotated introns
zinc finger protein 239-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
uncharacterized LOC122544257, transcript variant X1
uncharacterized LOC122544257, transcript variant X2
coxsackievirus and adenovirus receptor-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
claudin domain-containing protein 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
carcinoembryonic antigen-related cell adhesion molecule 6-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
carcinoembryonic antigen-related cell adhesion molecule 5-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 72% coverage of the annotated genomic feature by RNAseq alignments
lipolysis stimulated lipoprotein receptor
lipolysis-stimulated lipoprotein receptor
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 56% coverage of the annotated genomic feature by RNAseq alignments
pollen-specific leucine-rich repeat extensin-like protein 1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments
pollen-specific leucine-rich repeat extensin-like protein 1, transcript variant X2
pollen-specific leucine-rich repeat extensin-like protein 1 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 72% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 88% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 90% coverage of the annotated genomic feature by RNAseq alignments
carcinoembryonic antigen-related cell adhesion molecule 1-like, transcript variant X1
carcinoembryonic antigen-related cell adhesion molecule 1-like, transcript variant X2
carcinoembryonic antigen-related cell adhesion molecule 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 97% coverage of the annotated genomic feature by RNAseq alignments
leukocyte immunoglobulin-like receptor subfamily A member 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
pregnancy zone protein-like, transcript variant X1
pregnancy zone protein-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 85% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC122544179, transcript variant X4
uncharacterized LOC122544179, transcript variant X6
uncharacterized LOC122544179, transcript variant X1
uncharacterized LOC122544179, transcript variant X5
uncharacterized LOC122544179, transcript variant X3
uncharacterized LOC122544179, transcript variant X2
uncharacterized protein LOC122544179 isoform X4
uncharacterized protein LOC122544179 isoform X6
uncharacterized protein LOC122544179 isoform X1
uncharacterized protein LOC122544179 isoform X5
uncharacterized protein LOC122544179 isoform X3
uncharacterized protein LOC122544179 isoform X2
carcinoembryonic antigen-related cell adhesion molecule 5-like, transcript variant X2
carcinoembryonic antigen-related cell adhesion molecule 5-like, transcript variant X1
carcinoembryonic antigen-related cell adhesion molecule 5-like, transcript variant X3
carcinoembryonic antigen-related cell adhesion molecule 5-like isoform X1
carcinoembryonic antigen-related cell adhesion molecule 5-like isoform X2
carcinoembryonic antigen-related cell adhesion molecule 5-like isoform X3
carcinoembryonic antigen-related cell adhesion molecule 1-like, transcript variant X3
carcinoembryonic antigen-related cell adhesion molecule 1-like, transcript variant X5
carcinoembryonic antigen-related cell adhesion molecule 1-like, transcript variant X4
carcinoembryonic antigen-related cell adhesion molecule 1-like isoform X3
carcinoembryonic antigen-related cell adhesion molecule 1-like isoform X2
carcinoembryonic antigen-related cell adhesion molecule 1-like isoform X1
carcinoembryonic antigen-related cell adhesion molecule 1-like isoform X5
carcinoembryonic antigen-related cell adhesion molecule 1-like isoform X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins
immunoglobulin superfamily member 22-like, transcript variant X2
immunoglobulin superfamily member 22-like, transcript variant X3
immunoglobulin superfamily member 22-like, transcript variant X1
immunoglobulin superfamily member 22-like isoform X1
uncharacterized protein LOC122544186 isoform X2
uncharacterized LOC122544192, transcript variant X1
uncharacterized LOC122544192, transcript variant X2
poly(A)-specific ribonuclease PNLDC1-like
sialic acid-binding Ig-like lectin 10, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
sialic acid-binding Ig-like lectin 10, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
sialic acid-binding Ig-like lectin 10 isoform X1
sialic acid-binding Ig-like lectin 10 isoform X3
sialic acid-binding Ig-like lectin 10, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
sialic acid-binding Ig-like lectin 10 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
urokinase plasminogen activator surface receptor-like, transcript variant X3
urokinase plasminogen activator surface receptor-like, transcript variant X2
urokinase plasminogen activator surface receptor-like, transcript variant X1
urokinase plasminogen activator surface receptor-like isoform X3
urokinase plasminogen activator surface receptor-like isoform X2
urokinase plasminogen activator surface receptor-like isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
myelin-associated glycoprotein-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
myelin-associated glycoprotein-like, transcript variant X1
39S ribosomal protein L50, mitochondrial-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 94% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 98% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
T-lymphocyte activation antigen CD86-like
protein BTG3-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
protein BTG3-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
protein BTG3-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
protein BTG3-like, transcript variant X1
deoxyuridine 5'-triphosphate nucleotidohydrolase-like
basement membrane-specific heparan sulfate proteoglycan core protein-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
CD276 antigen homolog, transcript variant X1
CD276 antigen homolog, transcript variant X2
uncharacterized LOC122544207, transcript variant X5
uncharacterized LOC122544207, transcript variant X7
uncharacterized LOC122544207, transcript variant X6
uncharacterized LOC122544207, transcript variant X8
uncharacterized LOC122544207, transcript variant X1
uncharacterized LOC122544207, transcript variant X4
uncharacterized LOC122544207, transcript variant X9
uncharacterized LOC122544207, transcript variant X3
uncharacterized protein LOC122544207 isoform X6
uncharacterized protein LOC122544207 isoform X1
uncharacterized protein LOC122544207 isoform X4
uncharacterized protein LOC122544207 isoform X7
uncharacterized protein LOC122544207 isoform X3
uncharacterized LOC122544207, transcript variant X2
uncharacterized protein LOC122544207 isoform X2
uncharacterized protein LOC122544207 isoform X5
SMG9 nonsense mediated mRNA decay factor, transcript variant X1
SMG9 nonsense mediated mRNA decay factor, transcript variant X3
SMG9 nonsense mediated mRNA decay factor, transcript variant X2
SMG9 nonsense mediated mRNA decay factor, transcript variant X4
interferon-inducible GTPase 5-like, transcript variant X3
interferon-inducible GTPase 5-like, transcript variant X5
interferon-inducible GTPase 5-like, transcript variant X2
interferon-inducible GTPase 5-like, transcript variant X6
interferon-inducible GTPase 5-like, transcript variant X1
interferon-inducible GTPase 5-like, transcript variant X4
interferon-inducible GTPase 5-like isoform X2
interferon-inducible GTPase 5-like isoform X1
interferon-inducible GTPase 5-like isoform X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
uncharacterized protein LOC568891 homolog, transcript variant X2
uncharacterized protein LOC568891 homolog, transcript variant X3
uncharacterized protein LOC568891 homolog, transcript variant X4
uncharacterized protein LOC568891 homolog, transcript variant X1
cell surface glycoprotein MUC18 isoform X1
cell surface glycoprotein MUC18 isoform X2
serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 34 Proteins, and 91% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC122544212, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
uncharacterized LOC122544212, transcript variant X1
uncharacterized LOC122544212, transcript variant X2
uncharacterized protein LOC122544212 isoform X1
uncharacterized protein LOC122544212 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 33% coverage of the annotated genomic feature by RNAseq alignments
histone-lysine N-methyltransferase PRDM9
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA threonine (anticodon UGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
mitochondrial import receptor subunit TOM40 homolog
uncharacterized transmembrane protein DDB_G0289901-like, transcript variant X1
uncharacterized transmembrane protein DDB_G0289901-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
uncharacterized transmembrane protein DDB_G0289901-like isoform X2
interferon-induced protein 44-like, transcript variant X3
uncharacterized protein LOC122544220 isoform X3
interferon-induced protein 44-like, transcript variant X2
interferon-induced protein 44-like, transcript variant X1
interferon-induced protein 44-like isoform X2
interferon-induced protein 44-like isoform X1
interferon-induced protein 44-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
dehydrogenase/reductase SDR family member 4-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 28 samples with support for all annotated introns
urokinase plasminogen activator surface receptor-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 92% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 48% coverage of the annotated genomic feature by RNAseq alignments