Chiloscyllium plagiosum isolate BGI_BamShark_2017 chromosome 46, ASM401019v2, whole genome shotgun sequence.
Chiloscyllium plagiosum (whitespotted bambooshark)
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Orectolobiformes; Hemiscylliidae; Chiloscyllium.
REFSEQ INFORMATION: The reference sequence is identical to\nCM013001.1.\nAssembly name: ASM401019v2\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the BGI on 2019/01/10. The\noriginal whole-genome shotgun project has the accession\nQPFF00000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: BGI\nAssembly Method :: platanus v. 1.2.4; 3ddna v. 170123\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 280.0x\nSequencing Technology :: BGIseq-500\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Chiloscyllium plagiosum Annotation\n Release 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##
Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
uncharacterized LOC122544061, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
uncharacterized LOC122544061, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
uncharacterized LOC122544061, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
cilia- and flagella-associated protein 251-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
uncharacterized LOC122544060, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
uncharacterized LOC122544060, transcript variant X4
uncharacterized protein LOC122544060 isoform X4
uncharacterized protein LOC122544060 isoform X3
uncharacterized LOC122544060, transcript variant X3
uncharacterized LOC122544060, transcript variant X1
uncharacterized LOC122544060, transcript variant X2
uncharacterized protein LOC122544060 isoform X1
uncharacterized protein LOC122544060 isoform X2
uncharacterized LOC122544062, transcript variant X2
uncharacterized LOC122544062, transcript variant X4
uncharacterized LOC122544062, transcript variant X5
uncharacterized LOC122544062, transcript variant X3
uncharacterized LOC122544062, transcript variant X6
uncharacterized LOC122544062, transcript variant X1
uncharacterized LOC122544062, transcript variant X8
uncharacterized LOC122544062, transcript variant X7
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:12.0:RF00004
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 90% coverage of the annotated genomic feature by RNAseq alignments
NACHT, LRR and PYD domains-containing protein 3-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 31 samples with support for all annotated introns
membrane-spanning 4-domains subfamily A member 18-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 97% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC122544064, transcript variant X3
uncharacterized LOC122544064, transcript variant X2
uncharacterized LOC122544064, transcript variant X4
uncharacterized LOC122544064, transcript variant X1
uncharacterized LOC122544064, transcript variant X5
uncharacterized protein LOC122544064 isoform X2
uncharacterized protein LOC122544064 isoform X3
uncharacterized protein LOC122544064 isoform X1
serine protease FAM111A-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
serine protease FAM111A-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
centromere protein Q-like, transcript variant X1
centromere protein Q-like, transcript variant X2
vacuolar protein sorting-associated protein 37C-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 91% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
COORDINATES: nucleotide motif:Rfam:12.0:RF00003
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
ecto-ADP-ribosyltransferase 5-like, transcript variant X6
ecto-ADP-ribosyltransferase 5-like, transcript variant X5
ecto-ADP-ribosyltransferase 5-like, transcript variant X7
ecto-ADP-ribosyltransferase 5-like, transcript variant X4
ecto-ADP-ribosyltransferase 5-like, transcript variant X2
uncharacterized protein LOC122544068 isoform X2
ecto-ADP-ribosyltransferase 5-like, transcript variant X3
ecto-ADP-ribosyltransferase 5-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
ecto-ADP-ribosyltransferase 5-like isoform X1
NAD(P)(+)--arginine ADP-ribosyltransferase 2-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA lysine (anticodon UUU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transfer RNA valine (anticodon UAC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
uncharacterized LOC122544134, transcript variant X1
uncharacterized LOC122544134, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
uncharacterized protein LOC122544134 isoform X1
uncharacterized protein LOC122544134 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
uncharacterized LOC122544136, transcript variant X1
uncharacterized LOC122544136, transcript variant X2
NACHT, LRR and PYD domains-containing protein 12-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
NACHT, LRR and PYD domains-containing protein 12-like, transcript variant X4
NACHT, LRR and PYD domains-containing protein 12-like, transcript variant X1
NACHT, LRR and PYD domains-containing protein 12-like, transcript variant X2
NACHT, LRR and PYD domains-containing protein 12-like
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 65% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
T cell receptor alpha variable 5-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
T cell receptor alpha variable 5-like isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 86% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
M1-specific T cell receptor beta chain-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
neoverrucotoxin subunit beta-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
neoverrucotoxin subunit beta-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
neoverrucotoxin subunit beta-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
neoverrucotoxin subunit beta-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
probable G-protein coupled receptor 139, transcript variant X3
probable G-protein coupled receptor 139, transcript variant X6
probable G-protein coupled receptor 139, transcript variant X1
probable G-protein coupled receptor 139, transcript variant X7
probable G-protein coupled receptor 139, transcript variant X4
probable G-protein coupled receptor 139, transcript variant X5
probable G-protein coupled receptor 139, transcript variant X2
probable G-protein coupled receptor 139, transcript variant X8
NACHT, LRR and PYD domains-containing protein 3-like, transcript variant X2
NACHT, LRR and PYD domains-containing protein 3-like, transcript variant X1
beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 29 Proteins, and 50% coverage of the annotated genomic feature by RNAseq alignments
E3 ubiquitin-protein ligase ZFP91-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
E3 ubiquitin-protein ligase ZFP91-like, transcript variant X1
E3 ubiquitin-protein ligase ZFP91-like, transcript variant X3
E3 ubiquitin-protein ligase ZFP91-like isoform X1
E3 ubiquitin-protein ligase ZFP91-like isoform X3
uncharacterized protein LOC122544083 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
uncharacterized protein si:ch211-113e8.11
COORDINATES: nucleotide motif:Rfam:12.0:RF00001
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 89% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC122544084, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
uncharacterized LOC122544084, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
uncharacterized protein LOC122544084 isoform X1
uncharacterized protein LOC122544084 isoform X4
uncharacterized LOC122544084, transcript variant X3
uncharacterized LOC122544084, transcript variant X2
uncharacterized protein LOC122544084 isoform X3
uncharacterized protein LOC122544084 isoform X2
uncharacterized LOC122544084, transcript variant X5
uncharacterized protein LOC122544084 isoform X5
uncharacterized LOC122544084, transcript variant X6
uncharacterized protein LOC122544084 isoform X6
uncharacterized LOC122544087, transcript variant X3
uncharacterized LOC122544087, transcript variant X1
uncharacterized LOC122544087, transcript variant X5
uncharacterized LOC122544087, transcript variant X6
uncharacterized LOC122544087, transcript variant X2
uncharacterized LOC122544087, transcript variant X4
uncharacterized protein LOC122544087 isoform X1
uncharacterized protein LOC122544087 isoform X2
uncharacterized protein LOC122544087 isoform X4
uncharacterized protein LOC122544087 isoform X3
uncharacterized protein LOC122544087 isoform X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: NACHT, LRR and PYD domains-containing protein 12-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
NACHT, LRR and PYD domains-containing protein 4E-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 93% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
NACHT, LRR and PYD domains-containing protein 9-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
NACHT, LRR and PYD domains-containing protein 3-like, transcript variant X3
NACHT, LRR and PYD domains-containing protein 3-like isoform X1
NACHT, LRR and PYD domains-containing protein 3-like isoform X3
NACHT, LRR and PYD domains-containing protein 3-like isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 35% coverage of the annotated genomic feature by RNAseq alignments
interferon-induced very large GTPase 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 80% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
uncharacterized LOC122544094, transcript variant X3
uncharacterized LOC122544094, transcript variant X1
uncharacterized LOC122544094, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
gastrula zinc finger protein XlCGF7.1-like
probable G-protein coupled receptor 139 isoform X1
neuropeptides capa receptor-like isoform X2
cell division cycle and apoptosis regulator 1, transcript variant X2
cell division cycle and apoptosis regulator 1, transcript variant X1
cell division cycle and apoptosis regulator 1, transcript variant X3
cell division cycle and apoptosis regulator 1, transcript variant X4
cell division cycle and apoptosis regulator protein 1 isoform X1
cell division cycle and apoptosis regulator protein 1 isoform X2
COORDINATES: nucleotide motif:Rfam:12.0:RF00607
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
VPS26, retromer complex component A, transcript variant X2
VPS26, retromer complex component A, transcript variant X1
vacuolar protein sorting-associated protein 26A isoform X1
vacuolar protein sorting-associated protein 26A isoform X2
ATP-dependent RNA helicase SUPV3L1, mitochondrial
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 165 Proteins, and 91% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 37 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns