Chiloscyllium plagiosum mitochondrion, complete genome.
type: Entry
definition: Chiloscyllium plagiosum mitochondrion, complete genome.
sequence version: NC_012570.1
sequence date: 2023-04-03
sequence: sequence
division: VRT
label: NC_012570.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Chiloscyllium plagiosum (whitespotted bambooshark)
organism: Chiloscyllium plagiosum
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Orectolobiformes; Hemiscylliidae; Chiloscyllium.
reference: 1
reference: 2
reference: 3
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence was derived from FJ853422.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 16726
topology: circular
so has quality: SO_0000988
location: 1..16726
location: region:1-16726:1
RO_0002162: 36176

NC_012570
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: Studies on the complete mitochondrial DNA sequence of whitespotted bambooshark Chiloscyllium plagiosum
author: Xie, Y.-J.
author: Weng, Z.-H.
author: Su, Y.-Q.
author: Wang, J.
author: Wang, Z.-Y.
journal: Unpublished

2
title: Direct Submission
journal: Submitted (20-APR-2009) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Xie, Y.-J.
author: Weng, Z.-H.
author: Su, Y.-Q.
author: Wang, J.
author: Wang, Z.-Y.
journal: Submitted (22-MAR-2009) Fisheries College, Jimei University, Yindou Lu 43, Xiamen, Fujian 361021, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16726:1
position: 16726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16726:1:source
so part of: sequence
organism: Chiloscyllium plagiosum
organelle: mitochondrion
mol type: genomic DNA
specimen voucher: F007ZJ004(JMDX)

36176
type: Taxonomy
SIO_000068: taxonomy

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 36176
product: tRNA-Phe
so part of: sequence
location: 1..70
location: region:1-70:1
so has part: feature:1-70:1:region

position:70:1
position: 70
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-70:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 36176
product: 12S ribosomal RNA
so part of: sequence
location: 69..1022
location: region:69-1022:1
so has part: feature:69-1022:1:region

position:69:1
position: 69
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1022:1
position: 1022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:69-1022:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 36176
product: tRNA-Val
so part of: sequence
location: 1023..1094
location: region:1023-1094:1
so has part: feature:1023-1094:1:region

position:1023:1
position: 1023
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1094:1
position: 1094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1023-1094:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 36176
product: 16S ribosomal RNA
so part of: sequence
location: 1095..2771
location: region:1095-2771:1
so has part: feature:1095-2771:1:region

position:1095:1
position: 1095
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2771:1
position: 2771
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1095-2771:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 36176
product: tRNA-Leu
codon recognized: UUR
so part of: sequence
location: 2772..2846
location: region:2772-2846:1
so has part: feature:2772-2846:1:region

position:2772:1
position: 2772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2846:1
position: 2846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2772-2846:1:region

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 36176
gene: ND1
so part of: sequence
location: 2847..3821
location: region:2847-3821:1
so has part: feature:2847-3821:1:exon
subclass of: SO_0000010

7768754
type: Gene
SIO_000068: ncbigene

position:2847:1
position: 2847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3821:1
position: 3821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2847-3821:1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 36176
gene: ND1
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MFKTLMLYLINPLAYIIPILLATAFLTLIERKILGYMQLRKGPNVVGPYGLLQPIADGIKLFTKEPIRPSASSPLLFLATPTIALMLALLMWMPLPIPHSIINLNLALLFILAISSLTVYTILGSGWASNSKYALMGALRAVAQTISYEVSLGLILLSMIIFTGGFTLHTFNLTQETIWLIIPGWPLALMWYISTLAETNRAPFDLTEGESELVSGFNIEYAGGPFALFFLAEYTNILMMNTLSVILFMGTSYNPIMPQTSTFSLMMKATTLTLLFLWIRASYPRFRYDQLMYLVWKNFLPLTLAIMLWHITLPLTMASLPPLT
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 2847..3821
location: region:2847-3821:1
so has part: feature:2847-3821:1:exon

YP_002808537.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2847-3821:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 36176
product: tRNA-Ile
so part of: sequence
location: 3824..3893
location: region:3824-3893:1
so has part: feature:3824-3893:1:region

position:3824:1
position: 3824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3893:1
position: 3893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3824-3893:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 36176
product: tRNA-Gln
so part of: sequence
location: complement(3894..3965)
location: region:3894-3965:-1
so has part: feature:3894-3965:-1:region

position:3894:-1
position: 3894
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3965:-1
position: 3965
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3894-3965:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 36176
product: tRNA-Met
so part of: sequence
location: 3966..4034
location: region:3966-4034:1
so has part: feature:3966-4034:1:region

position:3966:1
position: 3966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4034:1
position: 4034
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3966-4034:1:region

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 36176
gene: ND2
so part of: sequence
location: 4035..5080
location: region:4035-5080:1
so has part: feature:4035-5080:1:exon
subclass of: SO_0000010

7768743
type: Gene
SIO_000068: ncbigene

position:4035:1
position: 4035
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5080:1
position: 5080
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4035-5080:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 36176
gene: ND2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:5079..5080,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MNPTTLIITIPSLALGTTLTFISSHWLLIWMGLEINTLAIIPMMIRQQHPRAVEATTKYFIIQATASATLLFASVTNAWTLGQWSLTELLNPTSATLTTTALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFAVLLQLHSVLNPNLLMLLGLLSTIIGGWGGLNQTQLRKILAYSSIANMGWMIIIMHYAPHLTLLNLTLYIIMTLTTFILFILFNSTKINSIASSSSKSPLMSIITLMTLLSLGGLPPLSGFMPKWLILQELTKQNLVIPATIMAIMALLSLFFYLRLCYATTLTISPKPLNMTSSWRTKIIHPNMLVTTSASISIMLLPLTPTILTLMM
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 4035..5080
location: region:4035-5080:1
so has part: feature:4035-5080:1:exon

YP_002808538.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4035-5080:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 36176
product: tRNA-Trp
so part of: sequence
location: 5081..5150
location: region:5081-5150:1
so has part: feature:5081-5150:1:region

position:5081:1
position: 5081
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5150:1
position: 5150
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5081-5150:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 36176
product: tRNA-Ala
so part of: sequence
location: complement(5152..5220)
location: region:5152-5220:-1
so has part: feature:5152-5220:-1:region

position:5152:-1
position: 5152
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5220:-1
position: 5220
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5152-5220:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 36176
product: tRNA-Asn
so part of: sequence
location: complement(5221..5293)
location: region:5221-5293:-1
so has part: feature:5221-5293:-1:region

position:5221:-1
position: 5221
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5293:-1
position: 5293
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5221-5293:-1:region

rep_origin
type: Replication Origin
subclass of: SO_0000296
RO_0002162: 36176
note: origin of L-strand replication
so part of: sequence
location: complement(5297..5331)
location: region:5297-5331:-1
so has part: feature:5297-5331:-1:region

position:5297:-1
position: 5297
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5331:-1
position: 5331
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5297-5331:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 36176
product: tRNA-Cys
so part of: sequence
location: complement(5327..5392)
location: region:5327-5392:-1
so has part: feature:5327-5392:-1:region

position:5327:-1
position: 5327
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5392:-1
position: 5392
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5327-5392:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 36176
product: tRNA-Tyr
so part of: sequence
location: complement(5393..5462)
location: region:5393-5462:-1
so has part: feature:5393-5462:-1:region

position:5393:-1
position: 5393
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5462:-1
position: 5462
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5393-5462:-1:region

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 36176
gene: COX1
so part of: sequence
location: 5464..7020
location: region:5464-7020:1
so has part: feature:5464-7020:1:exon
subclass of: SO_0000010

7768744
type: Gene
SIO_000068: ncbigene

position:5464:1
position: 5464
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7020:1
position: 7020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5464-7020:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 36176
gene: COX1
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit I
translation: MAINRWLFSTNHKDIGTLYLIFGAWAGMVGLALSLLIRAELSQPGSLLGDDQIYNVIVTAHAFVMIFFMVMPVMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASAGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILASINFITTIINMKPPAISQYQTPLFVWSILVTTILLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHVVAYYSGKKEPFGYMGMVWAMMAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLATLHGGSIKWETPLLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAVFAIMAGFIHWFPLISGFTLHSTWTKIQFILMFIGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLWNAISSIGSLVSLVAVILLLFIIWEAFASKREVLSIELPHTNVEWLHGCPPPYHTYEEPAFVQVQRTSF
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 5464..7020
location: region:5464-7020:1
so has part: feature:5464-7020:1:exon

YP_002808539.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5464-7020:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 36176
product: tRNA-Ser
codon recognized: UCN
so part of: sequence
location: complement(7022..7092)
location: region:7022-7092:-1
so has part: feature:7022-7092:-1:region

position:7022:-1
position: 7022
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7092:-1
position: 7092
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7022-7092:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 36176
product: tRNA-Asp
so part of: sequence
location: 7098..7167
location: region:7098-7167:1
so has part: feature:7098-7167:1:region

position:7098:1
position: 7098
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7167:1
position: 7167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7098-7167:1:region

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 36176
gene: COX2
so part of: sequence
location: 7170..7860
location: region:7170-7860:1
so has part: feature:7170-7860:1:exon
subclass of: SO_0000010

7768745
type: Gene
SIO_000068: ncbigene

position:7170:1
position: 7170
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7860:1
position: 7860
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7170-7860:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 36176
gene: COX2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:7860,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit II
translation: MAHPSQLGFQDAASPVMEELIHFHDHTLMIVFLISSLVLYIITAMVSTKLTNKYILDSQEIEIVWTILPAIILIMIALPSLRILYLMDEINDPHLTIKAMGHQWYWSYEYTDYEDLTFDSYMVQTQDLTPGQYRLLETDHRMVVPMESPIRVLVSAEDVLHSWTVPALGVKMDAVPGRLNQTAFIVSRPGVYYGQCSEICGANHSFMPIVVEAVPLEYFETWSSLMLEEA
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 7170..7860
location: region:7170-7860:1
so has part: feature:7170-7860:1:exon

YP_002808540.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7170-7860:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 36176
product: tRNA-Lys
so part of: sequence
location: 7861..7934
location: region:7861-7934:1
so has part: feature:7861-7934:1:region

position:7861:1
position: 7861
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7934:1
position: 7934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7861-7934:1:region

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 36176
gene: ATP8
so part of: sequence
location: 7936..8103
location: region:7936-8103:1
so has part: feature:7936-8103:1:exon
subclass of: SO_0000010

7768746
type: Gene
SIO_000068: ncbigene

position:7936:1
position: 7936
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8103:1
position: 8103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7936-8103:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 36176
gene: ATP8
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLNPHPWFVILLFSWIMFITILPKKVMKFSFNNEPTSKSAEKPKPESWNWPWS
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 7936..8103
location: region:7936-8103:1
so has part: feature:7936-8103:1:exon

YP_002808541.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7936-8103:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 36176
gene: ATP6
so part of: sequence
location: 8094..8777
location: region:8094-8777:1
so has part: feature:8094-8777:1:exon
subclass of: SO_0000010

7768747
type: Gene
SIO_000068: ncbigene

position:8094:1
position: 8094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8777:1
position: 8777
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8094-8777:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 36176
gene: ATP6
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 6
translation: MILNFFDQFLSPSLLGIPLFALAISLPWLLFPTPTHRWLNNRLMTLQAWFINRFAFQLMQPINLKGHKWIMLFTALMLFLISINLLGLLPYTFTPTTQLSLNMAFALPLWLTTVLIGMLNQPTIALGHLLPEGTPTPLIPILIVIETISLFIRPLALGVRLTANLTAGHLLMQLIATAAFVLITMMPTVAALTSMILFLLTVLEVAVAMIQAYVFVLLLSLYLQENV
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 8094..8777
location: region:8094-8777:1
so has part: feature:8094-8777:1:exon

YP_002808542.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8094-8777:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 36176
gene: COX3
so part of: sequence
location: 8777..9562
location: region:8777-9562:1
so has part: feature:8777-9562:1:exon
subclass of: SO_0000010

7768748
type: Gene
SIO_000068: ncbigene

position:9562:1
position: 9562
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8777-9562:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 36176
gene: COX3
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit III
translation: MAHQAHAFHMVDPSPWPLTGATAALLMTSGLAIWFHFHTLTLLYLGLALLLLTMIQWWRDIIREGTFQGHHTPPVQKGLRYGMILFITSEVFFFLGFFWAFYHSSLAPTPELGGCWPPTGIFPLDPFEVPLLNTAVLLASGVTVTWAHHSIMKGNRKEAIQALTLTIMLGFYFTTLQAMEYYEAPFTIADGVYGTTFYVATGFHGLHVIIGSTFLAICLLRQIQYHFTSEHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGS
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 8777..9562
location: region:8777-9562:1
so has part: feature:8777-9562:1:exon

YP_002808543.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8777-9562:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 36176
product: tRNA-Gly
so part of: sequence
location: 9565..9634
location: region:9565-9634:1
so has part: feature:9565-9634:1:region

position:9565:1
position: 9565
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9634:1
position: 9634
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9565-9634:1:region

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 36176
gene: ND3
so part of: sequence
location: 9635..9983
location: region:9635-9983:1
so has part: feature:9635-9983:1:exon
subclass of: SO_0000010

7768749
type: Gene
SIO_000068: ncbigene

position:9635:1
position: 9635
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9983:1
position: 9983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9635-9983:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 36176
gene: ND3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9983,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MNLIMSSIAITALISLILAMIAFWLPTLNPDNEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGNQLSTPSLTMLWASIIIILLTLGLIYEWLQGGLEWAE
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 9635..9983
location: region:9635-9983:1
so has part: feature:9635-9983:1:exon

YP_002808544.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9635-9983:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 36176
product: tRNA-Arg
so part of: sequence
location: 9984..10052
location: region:9984-10052:1
so has part: feature:9984-10052:1:region

position:9984:1
position: 9984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10052:1
position: 10052
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9984-10052:1:region

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 36176
gene: ND4L
so part of: sequence
location: 10053..10349
location: region:10053-10349:1
so has part: feature:10053-10349:1:exon
subclass of: SO_0000010

7768750
type: Gene
SIO_000068: ncbigene

position:10053:1
position: 10053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10349:1
position: 10349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10053-10349:1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 36176
gene: ND4L
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MSPMYFSFSSAFILGLMGLALNRSHLLSALLCLEGMMLTMFIAIAIWSMTLNSMSSSITPMILLTFSACEASAGLAILVATSRTHGSDNLQNLNLLQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: 10053..10349
location: region:10053-10349:1
so has part: feature:10053-10349:1:exon

YP_002808545.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10053-10349:1:exon

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 36176
gene: ND4
so part of: sequence
location: 10343..11720
location: region:10343-11720:1
so has part: feature:10343-11720:1:exon
subclass of: SO_0000010

7768751
type: Gene
SIO_000068: ncbigene

position:10343:1
position: 10343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11720:1
position: 11720
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10343-11720:1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 36176
gene: ND4
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:11720,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKILLPTMMLFPTTWLTPMKWLWPVSLTHSLIIALLSLTWFKWDSDIGWDSSNQYLAMDPLSMPLLILTCWLLPLMIMASQNHMYPEPIIRQRIYLTLLISLQAFLIMAFSATELIMFYIMFEATLIPTLIIITRWGNQTERLNAGIYFLFYTLMGSLPLLIALLTLQNSLGTLSMMIMQYSQPSELLLWADKFWWTACIMAFLVKMPLYGVHLWLPKAHVEAPIAGSMILAAILLKLGGYGMMRIIIMLNPLTKELAYPFIILAIWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVVGAILIQMPWSFAGAITLMIAHGLISSALFCLANTNYERTHSRTLLLARGIQIALPLMTTWWFLTNLANLALPPTPNLMGELLIISSLFNWSNWTIIMTGLGVLITASYSLYMFLMTQRGPIQNHIPSLIPSYTREHLLLTLHLLPMLLLILKPQLIMGWT
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 10343..11720
location: region:10343-11720:1
so has part: feature:10343-11720:1:exon

YP_002808546.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10343-11720:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 36176
product: tRNA-His
so part of: sequence
location: 11721..11789
location: region:11721-11789:1
so has part: feature:11721-11789:1:region

position:11721:1
position: 11721
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11789:1
position: 11789
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11721-11789:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 36176
product: tRNA-Ser
codon recognized: AGY
so part of: sequence
location: 11790..11856
location: region:11790-11856:1
so has part: feature:11790-11856:1:region

position:11790:1
position: 11790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11856:1
position: 11856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11790-11856:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 36176
product: tRNA-Leu
codon recognized: CUN
so part of: sequence
location: 11857..11928
location: region:11857-11928:1
so has part: feature:11857-11928:1:region

position:11857:1
position: 11857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11928:1
position: 11928
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11857-11928:1:region

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 36176
gene: ND5
so part of: sequence
location: 11929..13767
location: region:11929-13767:1
so has part: feature:11929-13767:1:exon
subclass of: SO_0000010

7768752
type: Gene
SIO_000068: ncbigene

position:11929:1
position: 11929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13767:1
position: 13767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11929-13767:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 36176
gene: ND5
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MNIIFNSSFLLIFFILMFPLISSLSYKKPDHNWASLHAKTAVKYSFFISLIPLSIFLDQGMESILTNWNWMNIGPYDINMSFKFDLYSIIFTPIALYVTWSILEFALWYMHSDPNINRFFKYLLLFLISMIILVTANNMFQLFIGWEGVGIMSFLLIGWWYSRTDANTAALQAVIYNRVGDIGLILTMAWLAMNLNSWEIQQLFILSKDMDLTLPLLGLILAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRLHPLMQNNQMALTTCLCLGALTTLFTATCALTQNDIKKIIAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGSLHKILPFTSSSLIIGSLALTGMPFLSGFFSKDAIIEALNTSHLNAWALILTIIATSFTAIYSFRLIFFTLMNYPRFNTSSPINENNPLMINPIKRLAYGSIIAGLIITSNMLPTKTQVMTMPPLLKLTALLVTISGLLLAFELSNLTNTQLKITPTLKLFYFSNMLSYFPQIIHRLLPKINLNWAQHISTHLIDLTWYEKIGPKSPIIQQIPMIKLSTKPQQGHIKTYLMLLFLTMTLMTMFSLTNYT
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 11929..13767
location: region:11929-13767:1
so has part: feature:11929-13767:1:exon

YP_002808547.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11929-13767:1:exon

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 36176
gene: ND6
so part of: sequence
location: complement(13750..14274)
location: region:13750-14274:-1
so has part: feature:13750-14274:-1:exon
subclass of: SO_0000010

7768755
type: Gene
SIO_000068: ncbigene

position:13750:-1
position: 13750
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14274:-1
position: 14274
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13750-14274:-1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 36176
gene: ND6
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MIYFMSVMMIGLILGLMAVASNPSPYYAALGLVMAAGMGCGLMVGYGGSFLSLVLFLIYLGGMLVVFVYTAALAAEPYPEAWGDWSVLLYVGIYLMSVIFVGKYFAVDWYNMNWVGVEENSGLDMVRGDFGGVALLYSCGGWMLLLGGWVLLLALFVVLELTRGLSWGALRVVS
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: complement(13750..14274)
location: region:13750-14274:-1
so has part: feature:13750-14274:-1:exon

YP_002808548.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13750-14274:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 36176
product: tRNA-Glu
so part of: sequence
location: complement(14275..14344)
location: region:14275-14344:-1
so has part: feature:14275-14344:-1:region

position:14275:-1
position: 14275
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14344:-1
position: 14344
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14275-14344:-1:region

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 36176
gene: CYTB
so part of: sequence
location: 14347..15491
location: region:14347-15491:1
so has part: feature:14347-15491:1:exon
subclass of: SO_0000010

7768753
type: Gene
SIO_000068: ncbigene

position:14347:1
position: 14347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15491:1
position: 15491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14347-15491:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 36176
gene: CYTB
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:15490..15491,aa:TERM)
transl table: 2
product: cytochrome b
translation: MATNIRKTHPLFKIVNHTLIDLPSPSNISIWWNFGSLLGLCLIIQILTGLFLAMHYTADISMAFSSVTHICRDVNYGWLIRNIHANGASMFFICVYLHIARGIYYGSYLNKEAWNIGVILLFLLMATAFVGYVLPWGQMSFWGATVITNLLSAFPYIGNILVQWIWGGFSVDNATLTRFFTFHFLLPFLIAALSMIHILFLHEKGSNNPTGLNSDMDKIPFHPYFSYKDLMGFFIMIFSLTLLALFSPNLLGDAENFIPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSIFILLLIPLLHTSKQRSSIFRPITQFLFWTLTANTIILTWIGGQPVEQPFILIGQIASIIYFLLFLIIMPVMSWWENKILNLN
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 14347..15491
location: region:14347-15491:1
so has part: feature:14347-15491:1:exon

YP_002808549.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14347-15491:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 36176
product: tRNA-Thr
so part of: sequence
location: 15492..15562
location: region:15492-15562:1
so has part: feature:15492-15562:1:region

position:15492:1
position: 15492
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15562:1
position: 15562
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15492-15562:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 36176
product: tRNA-Pro
so part of: sequence
location: complement(15563..15631)
location: region:15563-15631:-1
so has part: feature:15563-15631:-1:region

position:15563:-1
position: 15563
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15631:-1
position: 15631
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15563-15631:-1:region

D-loop
type: Displacement Loop
subclass of: SO_0000297
RO_0002162: 36176
note: control region
so part of: sequence
location: 15632..16726
location: region:15632-16726:1
so has part: feature:15632-16726:1:region

position:15632:1
position: 15632
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15632-16726:1:region