Clostridium tagluense strain CM022 plasmid pCM022-58, complete sequence.
Bacteria; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium.
Clostridia strains as spoilage organisms
Submitted (28-OCT-2021) Institute for Food Safety and Hygiene, University of Zurich, Winterthurerstrasse 272, Zurich, Zurich 8057, Switzerland
REFSEQ INFORMATION: The reference sequence is identical to\nCP086158.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: OCT-2021\nAssembly Method :: unicycler v. 1\nAssembly Name :: CM022\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 150x\nSequencing Technology :: Nanopore/Illumina miniseq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/08/2022 11:54:01\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,122\nCDSs (total) :: 4,979\nGenes (coding) :: 4,890\nCDSs (with protein) :: 4,890\nGenes (RNA) :: 143\nrRNAs :: 15, 15, 14 (5S, 16S, 23S)\ncomplete rRNAs :: 15, 15, 14 (5S, 16S, 23S)\ntRNAs :: 94\nncRNAs :: 5\nPseudo Genes (total) :: 89\nCDSs (without protein) :: 89\nPseudo Genes (ambiguous residues) :: 0 of 89\nPseudo Genes (frameshifted) :: 23 of 89\nPseudo Genes (incomplete) :: 72 of 89\nPseudo Genes (internal stop) :: 16 of 89\nPseudo Genes (multiple problems) :: 20 of 89\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF017885.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014442.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013412851.1
COORDINATES: protein motif:HMM:NF012464.2
COORDINATES: similar to AA sequence:RefSeq:WP_011100780.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF013561.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013721027.1
COORDINATES: protein motif:HMM:NF012869.2
COORDINATES: protein motif:HMM:NF015983.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013094.2
COORDINATES: similar to AA sequence:RefSeq:WP_008707987.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013995.2
COORDINATES: protein motif:HMM:NF013954.2
GO:0004040 - amidase activity [Evidence IEA]
glucosaminidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013239887.1
COORDINATES: protein motif:HMM:NF019487.2
COORDINATES: similar to AA sequence:RefSeq:WP_015617852.1
COORDINATES: similar to AA sequence:RefSeq:WP_011948461.1
COORDINATES: protein motif:HMM:TIGR02937.1
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_020817274.1
COORDINATES: protein motif:HMM:NF018437.2
leucine-rich repeat domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003375364.1
COORDINATES: similar to AA sequence:RefSeq:WP_006521022.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013913692.1
COORDINATES: similar to AA sequence:RefSeq:WP_011986174.1
COORDINATES: similar to AA sequence:RefSeq:WP_012344391.1
COORDINATES: similar to AA sequence:RefSeq:WP_013720987.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010890859.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
RepB family plasmid replication initiator protein
COORDINATES: similar to AA sequence:RefSeq:WP_004057832.1
PDDEXK nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005487554.1
COORDINATES: protein motif:HMM:NF024427.2