Xanthomonas euvesicatoria pv. alfalfae strain CFBP3836 plasmid pXEA29.3836R, complete sequence.
Xanthomonas euvesicatoria pv. alfalfae (Xanthomonas alfalfae subsp. alfalfae)
Bacteria; Pseudomonadota; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.
Complete and circularized genome sequences of three Xanthomonas strains pathogenic on soybean or alfalfa
Submitted (24-MAR-2021) EMERSYS, IRHS, 42, rue Georges Morel, Beaucouze 49071, France
REFSEQ INFORMATION: The reference sequence is identical to\nCP072269.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: MAR-2021\nAssembly Method :: HGAP PreAssembler Filter v. v1; Canu v.\n v1.5; Berokka v. v0.2.3; Circlator v.\n v1.5.1; variantCaller v. v2.2.2; Pilon v.\n v1.23\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 300.0x\nSequencing Technology :: PacBio RSII; Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/13/2023 20:55:59\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,357\nCDSs (total) :: 4,265\nGenes (coding) :: 4,157\nCDSs (with protein) :: 4,157\nGenes (RNA) :: 92\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 53\nncRNAs :: 33\nPseudo Genes (total) :: 108\nCDSs (without protein) :: 108\nPseudo Genes (ambiguous residues) :: 0 of 108\nPseudo Genes (frameshifted) :: 61 of 108\nPseudo Genes (incomplete) :: 53 of 108\nPseudo Genes (internal stop) :: 17 of 108\nPseudo Genes (multiple problems) :: 20 of 108\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
pathotype strain of Xanthomonas euvesicatoria pv. alfalfae
COORDINATES: similar to AA sequence:RefSeq:WP_007974941.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017113814.1
COORDINATES: similar to AA sequence:RefSeq:WP_011052998.1
COORDINATES: similar to AA sequence:RefSeq:WP_017167886.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_017167887.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_017154897.1
COORDINATES: similar to AA sequence:RefSeq:WP_017172642.1
COORDINATES: similar to AA sequence:RefSeq:WP_007966866.1
COORDINATES: similar to AA sequence:RefSeq:WP_007966864.1
COORDINATES: similar to AA sequence:RefSeq:WP_017161529.1
COORDINATES: similar to AA sequence:RefSeq:WP_017158795.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_011345593.1
COORDINATES: similar to AA sequence:RefSeq:WP_017158765.1
COORDINATES: similar to AA sequence:RefSeq:WP_017164708.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017157753.1
COORDINATES: similar to AA sequence:RefSeq:WP_019303585.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_017158763.1
COORDINATES: similar to AA sequence:RefSeq:WP_017172645.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_019334760.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017160511.1
COORDINATES: similar to AA sequence:RefSeq:WP_017161571.1
COORDINATES: similar to AA sequence:RefSeq:WP_017164407.1
COORDINATES: similar to AA sequence:RefSeq:WP_019303580.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008343655.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005931779.1
COORDINATES: similar to AA sequence:RefSeq:WP_011345603.1
P-type conjugative transfer protein VirB9
COORDINATES: similar to AA sequence:RefSeq:WP_019303576.1
COORDINATES: similar to AA sequence:RefSeq:WP_017167764.1
COORDINATES: similar to AA sequence:RefSeq:WP_017171755.1
COORDINATES: similar to AA sequence:RefSeq:WP_015462617.1
COORDINATES: similar to AA sequence:RefSeq:WP_017167931.1
COORDINATES: similar to AA sequence:RefSeq:WP_005931796.1
COORDINATES: similar to AA sequence:RefSeq:WP_003490875.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_007974938.1
COORDINATES: similar to AA sequence:RefSeq:WP_017158353.1