Halobiforma lacisalsi AJ5 plasmid pHLAJ5I, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Natrialbales; Natrialbaceae; Halobiforma.
Genome sequence of Halobiforma lacisalsi AJ5, an extremely halophilic archaeon which harbors a bop gene
Submitted (11-JAN-2017) Laboratory of Marine Ecosystem and Biogeochemistry, Second Institute of Oceanography, State Oceanic Administration, 36th Baochu Bei Road, Hangzhou, Zhejiang 310012, China
Submitted (26-SEP-2011) Institute of Microbiology, College of Life Sciences, Zhejiang University, 866 Yuhangtang Road, Hangzhou, Zhejiang Province 310058, P.R. China
REFSEQ INFORMATION: The reference sequence is identical to\nCP019286.1.\nSource DNA available from Min Wu, Xia-wei Jiang and Hong Cheng.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SOAPdenovo v. 1.05\nGenome Coverage :: 390x\nSequencing Technology :: Hiseq; Miseq; Ion-torrent; Sanger for gap\n closure\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/23/2023 05:47:10\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,295\nCDSs (total) :: 4,234\nGenes (coding) :: 4,143\nCDSs (with protein) :: 4,143\nGenes (RNA) :: 61\nrRNAs :: 4, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 3, 3 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 2\nPseudo Genes (total) :: 91\nCDSs (without protein) :: 91\nPseudo Genes (ambiguous residues) :: 0 of 91\nPseudo Genes (frameshifted) :: 40 of 91\nPseudo Genes (incomplete) :: 63 of 91\nPseudo Genes (internal stop) :: 11 of 91\nPseudo Genes (multiple problems) :: 20 of 91\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_015310305.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005580445.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
ADP-ribosylglycohydrolase family protein
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007143123.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006826443.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143125.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143126.1
COORDINATES: similar to AA sequence:RefSeq:WP_010546872.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143128.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143130.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945391.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143132.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143133.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611805.1
COORDINATES: similar to AA sequence:RefSeq:WP_007139946.1
ISH6-like element ISHala2 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_007139945.1
COORDINATES: protein motif:HMM:NF024091.2
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007139942.1
COORDINATES: similar to AA sequence:RefSeq:WP_007139940.1
COORDINATES: protein motif:HMM:NF025030.2
COORDINATES: similar to AA sequence:RefSeq:WP_007139939.1
helix-hairpin-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007139938.1
COORDINATES: similar to AA sequence:RefSeq:WP_007139937.1
COORDINATES: similar to AA sequence:RefSeq:WP_007139936.1
COORDINATES: similar to AA sequence:RefSeq:WP_010546857.1
COORDINATES: similar to AA sequence:RefSeq:WP_007139933.1
COORDINATES: similar to AA sequence:RefSeq:WP_007139932.1
COORDINATES: similar to AA sequence:RefSeq:WP_007139931.1
COORDINATES: similar to AA sequence:RefSeq:WP_007139930.1
COORDINATES: similar to AA sequence:RefSeq:WP_007139929.1
COORDINATES: similar to AA sequence:RefSeq:WP_007139928.1
COORDINATES: similar to AA sequence:RefSeq:WP_007139927.1
COORDINATES: similar to AA sequence:RefSeq:WP_007139926.1
COORDINATES: similar to AA sequence:RefSeq:WP_007139925.1
COORDINATES: similar to AA sequence:RefSeq:WP_007139924.1
COORDINATES: similar to AA sequence:RefSeq:WP_007139923.1
COORDINATES: protein motif:HMM:NF022442.2
COORDINATES: similar to AA sequence:RefSeq:WP_007139920.1
COORDINATES: similar to AA sequence:RefSeq:WP_013876081.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007139918.1
COORDINATES: protein motif:HMM:NF024907.2
COORDINATES: similar to AA sequence:RefSeq:WP_007139916.1
COORDINATES: similar to AA sequence:RefSeq:WP_007139915.1
COORDINATES: similar to AA sequence:RefSeq:WP_007139913.1
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013035025.1
COORDINATES: similar to AA sequence:RefSeq:WP_010546853.1
COORDINATES: similar to AA sequence:RefSeq:WP_007139910.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_007139909.1
COORDINATES: similar to AA sequence:RefSeq:WP_006067206.1
COORDINATES: similar to AA sequence:RefSeq:WP_007142512.1
COORDINATES: similar to AA sequence:RefSeq:WP_007141673.1
COORDINATES: similar to AA sequence:RefSeq:WP_004596207.1
COORDINATES: similar to AA sequence:RefSeq:WP_007139904.1
PAS domain-containing sensor histidine kinase
COORDINATES: protein motif:HMM:NF039733.1
COORDINATES: similar to AA sequence:RefSeq:WP_007139900.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008524572.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053212.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007139896.1
COORDINATES: similar to AA sequence:RefSeq:WP_007140345.1
COORDINATES: similar to AA sequence:RefSeq:WP_007139894.1
COORDINATES: similar to AA sequence:RefSeq:WP_008457121.1
4Fe-4S dicluster domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008457122.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010546869.1
4Fe-4S ferredoxin N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007143033.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143034.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143035.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143036.1
GO:0004521 - endoribonuclease activity [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007143037.1
GO:0004520 - endodeoxyribonuclease activity [Evidence IEA]
type I-B CRISPR-associated endonuclease Cas1b
COORDINATES: similar to AA sequence:RefSeq:WP_007143038.1
GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004966756.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143040.1
GO:0003674 - molecular_function [Evidence IEA]
type I-B CRISPR-associated protein Cas5b
COORDINATES: similar to AA sequence:RefSeq:WP_007143041.1
type I-B CRISPR-associated protein Cas7/Csh2
COORDINATES: similar to AA sequence:RefSeq:WP_012660067.1
type I-B CRISPR-associated protein Cas8b/Csh1
COORDINATES: similar to AA sequence:RefSeq:WP_007143043.1
COORDINATES: similar to AA sequence:RefSeq:WP_015310310.1
COORDINATES: similar to AA sequence:RefSeq:WP_004052020.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007143045.1
DUF4097 family beta strand repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014051726.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143049.1
type 2 lanthipeptide synthetase LanM family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006108666.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143051.1
COORDINATES: similar to AA sequence:RefSeq:WP_010902762.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143052.1
COORDINATES: protein motif:HMM:NF013488.2
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007143056.1
IS701-like element ISHala4 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_007143057.1
COORDINATES: similar to AA sequence:RefSeq:WP_014555899.1
COORDINATES: similar to AA sequence:RefSeq:WP_006065896.1
COORDINATES: similar to AA sequence:RefSeq:WP_006431778.1
COORDINATES: similar to AA sequence:RefSeq:WP_006065898.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143063.1
COORDINATES: similar to AA sequence:RefSeq:WP_006065899.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143065.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0140658 - ATP-dependent chromatin remodeler activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007188151.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143068.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143070.1
COORDINATES: similar to AA sequence:RefSeq:WP_006065903.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007143072.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143073.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143074.1
COORDINATES: similar to AA sequence:RefSeq:WP_004516383.1
COORDINATES: similar to AA sequence:RefSeq:WP_006065908.1
COORDINATES: similar to AA sequence:RefSeq:WP_006090797.1
COORDINATES: similar to AA sequence:RefSeq:WP_012289608.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143081.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143082.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143083.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053094.1
COORDINATES: similar to AA sequence:RefSeq:WP_013881801.1
COORDINATES: similar to AA sequence:RefSeq:WP_013881804.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904033.1
VirB4 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_014865840.1
COORDINATES: similar to AA sequence:RefSeq:WP_014865841.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458711.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143091.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904232.1
COORDINATES: similar to AA sequence:RefSeq:WP_013881810.1
COORDINATES: similar to AA sequence:RefSeq:WP_004971372.1
COORDINATES: similar to AA sequence:RefSeq:WP_014555704.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012289744.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143097.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143098.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143100.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143101.1
COORDINATES: similar to AA sequence:RefSeq:WP_008418236.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008418235.1
COORDINATES: protein motif:HMM:NF019876.2
TFIIB-type zinc ribbon-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007143104.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143106.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183369.1
transcription initiation factor IIB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014865851.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143109.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053103.1
COORDINATES: similar to AA sequence:RefSeq:WP_010903158.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183334.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183333.1
COORDINATES: similar to AA sequence:RefSeq:WP_006054726.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825217.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007143114.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143115.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048548.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006092962.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143117.1
COORDINATES: similar to AA sequence:RefSeq:WP_006092966.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143121.1
COORDINATES: similar to AA sequence:RefSeq:WP_006065891.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143119.1