Bifidobacterium choerinum strain FMB-1 plasmid pBC, complete sequence.
type: Entry
definition: Bifidobacterium choerinum strain FMB-1 plasmid pBC, complete sequence.
sequence version: NZ_CP018045.1
sequence date: 2023-02-06
sequence: sequence
division: CON
label: NZ_CP018045.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN05949246
keyword: RefSeq
source: Bifidobacterium choerinum
organism: Bifidobacterium choerinum
taxonomy: Bacteria; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP018045.1.\nBacteria and source DNA available from Cheon-Seok Park.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: RS HGAP assembly v. 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 395.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 06:49:14\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,898\nCDSs (total) :: 1,829\nGenes (coding) :: 1,803\nCDSs (with protein) :: 1,803\nGenes (RNA) :: 69\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 54\nncRNAs :: 3\nPseudo Genes (total) :: 26\nCDSs (without protein) :: 26\nPseudo Genes (ambiguous residues) :: 0 of 26\nPseudo Genes (frameshifted) :: 5 of 26\nPseudo Genes (incomplete) :: 22 of 26\nPseudo Genes (internal stop) :: 2 of 26\nPseudo Genes (multiple problems) :: 3 of 26\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 11012
topology: circular
so has quality: SO_0000988
location: 1..11012
location: region:1-11012:1
RO_0002162: 35760

NZ_CP018045
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN05949246
type: BioSample
SIO_000068: biosample

1
title: complete genome sequence of Bifidobacterium choerinum strain FMB-1
author: Park, C.-S.
author: Jung, D.-H.
author: Choi, D.-S.
journal: Unpublished

2
title: Direct Submission
author: Park, C.-S.
author: Jung, D.-H.
author: Choi, D.-S.
journal: Submitted (14-NOV-2016) Food Science and Biotechnology, Kyung Hee University, Deogyeong-daero, Yong-in 446-701, Korea, Republic of

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11012:1
position: 11012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-11012:1:source
so part of: sequence
organism: Bifidobacterium choerinum
mol type: genomic DNA
strain: FMB-1
isolation source: rumen fluid
host: Bos taurus coreanae (Korean native cattle)
plasmid: pBC
country: South Korea: Paju, Gyeonggi-do
collection date: 2016-08-26

35760
type: Taxonomy
SIO_000068: taxonomy

BcFMB_RS09360
type: Gene
subclass of: SO_0000704
RO_0002162: 35760
locus tag: BcFMB_RS09360
so part of: sequence
location: complement(join(10937..11012,1..914))
location: region:1-11012:-1
so has part: feature:1-914:-1:exon
so has part: feature:10937-11012:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11012:-1
position: 11012
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-914:-1:exon

position:914:-1
position: 914
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:10937-11012:-1:exon

position:10937:-1
position: 10937
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

BcFMB_RS09360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 35760
locus tag: BcFMB_RS09360
function: Transposase and inactivated derivatives
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009778347.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS481-like element IS5564 family transposase
translation: MTHPNALLTPRARLRLARLIVEDGYPATIAAKMFMVSPITARKWAGRYREEGEFGMQDRSSKPHRIPGRTPEHVKKKIINLRWRLRLGPAQIAARLGLSTSTVHAVLVRCRVNRLSHIDRVTGEPLRRYEHPHPGSLIHVDVTKFGNIPDGGGHRYVGRQQGARNKLATPGLPRGKDHKPRTGTAFVHTVIDDHSRVAYAEIWSDEQASTAVGVLERAVAWFAERGVTVERVLSDNGSAYRSHAWRDFCARLGIRHKRTRPYRPQTNGKIERFHRTLGDGWAYARFYGSEAERRLALPGWLHFYNHHRHHSAIGGVPFDRLNNVPGHHI
SIO_010081: BcFMB_RS09360
subclass of: SO_0000673
so part of: BcFMB_RS09360
location: complement(join(10937..11012,1..914))
location: region:1-11012:-1
so has part: feature:1-914:-1:exon
so has part: feature:10937-11012:-1:exon

WP_011273866.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-914:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:10937-11012:-1:exon

BcFMB_RS09365
type: Gene
subclass of: SO_0000704
RO_0002162: 35760
gene: cmx
locus tag: BcFMB_RS09365
old locus tag: BcFMB_09240
so part of: sequence
location: complement(914..2089)
location: region:914-2089:-1
so has part: feature:914-2089:-1:exon
subclass of: SO_0000010

position:2089:-1
position: 2089
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:914-2089:-1:exon

BcFMB_RS09365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 35760
gene: cmx
locus tag: BcFMB_RS09365
old locus tag: BcFMB_09240
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010890215.1
GO function: GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO process: GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: chloramphenicol efflux MFS transporter Cmx
translation: MPFALYMLALAVFVMGTSEFMLAGLLPAIATELDVSVGTAGLLTSAFAVGMVVGAPVMAAFARRWPPRLTLIVCLLVFAGSHVIGAMTPVFSLLLITRVLSALANAGFLAVALSTATTLVPANQKGRALSILLSGTTIATVVGVPAGALLSTALGWRTTFWAIAILCIPAAVGVIRGVTNNVGRSETSATSPRLRVELSQLATPRLILAMALGALNNGGTFAAFTFLAPIVTETAGLAEAWVSVALVMFGIGSFLGVTIAGRLSDQRPGLVLAVGGPLLLTGWIVLAVVASHPVALIVLVLVQGFLSFGVGSTLITRVLYAASGAPTMGGSYATAALNIGAAAGPVLGALGLATGLGLLAPVWVASVLTAIALVIMLLTRRALTKTAAEAN
SIO_010081: BcFMB_RS09365
subclass of: SO_0000673
so part of: BcFMB_RS09365
location: complement(914..2089)
location: region:914-2089:-1
so has part: feature:914-2089:-1:exon

WP_099721785.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:914-2089:-1:exon

BcFMB_RS09370
type: Gene
subclass of: SO_0000704
RO_0002162: 35760
locus tag: BcFMB_RS09370
old locus tag: BcFMB_09245
so part of: sequence
location: 2380..3198
location: region:2380-3198:1
so has part: feature:2380-3198:1:exon
subclass of: SO_0000010

position:2380:1
position: 2380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3198:1
position: 3198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2380-3198:1:exon

BcFMB_RS09370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 35760
locus tag: BcFMB_RS09370
old locus tag: BcFMB_09245
EC number: 3.1.-.-
inference: COORDINATES: protein motif:HMM:NF013964.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HNH endonuclease signature motif containing protein
translation: MDDKQKLLNTPLTIYVCEGTPSEIEEWFKTINIAGVPLSNQELRNAAYHGSFVNRAREMFSNSQNGNMARWRTYVKGDPKRQDILEAALDWVSDGNIEEYMAAHRHDENIDELANYFETVLDWVGNVFDSTDSVMRGQHWGEFYRKYHSNSYSKDRISERMEELMGDEAVTSKSGIIEYLLDGENDPELLHIRIFSASDKKTAYAQQTKKAKEQGISNCPMCVQEDGANKSKIYKQSEMEADHVTAWSKGGATTLSNCQMLCTKHNRMKGNR
SIO_010081: BcFMB_RS09370
subclass of: SO_0000673
so part of: BcFMB_RS09370
location: 2380..3198
location: region:2380-3198:1
so has part: feature:2380-3198:1:exon

WP_232513927.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2380-3198:1:exon

BcFMB_RS09375
type: Gene
subclass of: SO_0000704
RO_0002162: 35760
locus tag: BcFMB_RS09375
old locus tag: BcFMB_09250
so part of: sequence
location: complement(3206..4018)
location: region:3206-4018:-1
so has part: feature:3206-4018:-1:exon
subclass of: SO_0000010

position:3206:-1
position: 3206
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4018:-1
position: 4018
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3206-4018:-1:exon

BcFMB_RS09375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 35760
locus tag: BcFMB_RS09375
old locus tag: BcFMB_09250
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MMQQFRTVADVHKHILGYKSTATIKNACVAAQEHGKVVTNDDDAFLYWDDGKMRVRKHGKRAWEIDITSPQIVEWQKRGKEAALEEAKRQQKEEKAKADAGAAEKLQGVEEERDELKQEVEDLKNEIAQLKADHAAEIERINSAHANEVNQIKAACDVKLAQLEARLYKEFNEKLTARATSASAPKAAPKAAPVPNAVKATIADGEPSGGKRAKNLTIEQKEAIALEWDAYMEENPNAPLSDFAKLWLSEHNSDRSFRTIERAVKAMRNI
SIO_010081: BcFMB_RS09375
subclass of: SO_0000673
so part of: BcFMB_RS09375
location: complement(3206..4018)
location: region:3206-4018:-1
so has part: feature:3206-4018:-1:exon

WP_157775299.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3206-4018:-1:exon

BcFMB_RS09380
type: Gene
subclass of: SO_0000704
RO_0002162: 35760
locus tag: BcFMB_RS09380
old locus tag: BcFMB_09255
so part of: sequence
location: complement(4289..5080)
location: region:4289-5080:-1
so has part: feature:4289-5080:-1:exon
subclass of: SO_0000010

position:4289:-1
position: 4289
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5080:-1
position: 5080
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4289-5080:-1:exon

BcFMB_RS09380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 35760
locus tag: BcFMB_RS09380
old locus tag: BcFMB_09255
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSSEAKERQIIVQQIRKYTKLRGMKNTSSGKMRTSTSLQQKLEDLFGAAAPNAQTLQRLVSATRSQTPTPIQLLELSIALNVPLLALILDVDQPYKYCALYNEKDGSGLKLTNLDLFNHEAGMFLNTFTNGTPGKEESLEFMLSLLPIELQTMKTAYSLHVYKTRLSPNLNNITRDEFKNKQVLRERAVENLTGVVANDEDLMRTSGLYYPEEEHEEAYRLVQRAIEQWQPSLDDAPYLPEYERLCNEYKDHHENTAEASKHQ
SIO_010081: BcFMB_RS09380
subclass of: SO_0000673
so part of: BcFMB_RS09380
location: complement(4289..5080)
location: region:4289-5080:-1
so has part: feature:4289-5080:-1:exon

WP_099721788.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4289-5080:-1:exon

BcFMB_RS09385
type: Gene
subclass of: SO_0000704
RO_0002162: 35760
locus tag: BcFMB_RS09385
old locus tag: BcFMB_09260
so part of: sequence
location: 5190..5612
location: region:5190-5612:1
so has part: feature:5190-5612:1:exon
subclass of: SO_0000010

position:5190:1
position: 5190
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5612:1
position: 5612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5190-5612:1:exon

BcFMB_RS09385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 35760
locus tag: BcFMB_RS09385
old locus tag: BcFMB_09260
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MANFRLDALTFDASALSTVPAVFEVDAPIRPERMKPVTEYQQPDVLKEVHGRNLYRVDLLWRDPEEGSFKNVTVQVFNPPEETIPSGTKVRPAGTMYISTRDDDGWVAFKLMVDHLEVLDSSADAPAYSSLPLMSGDEDE
SIO_010081: BcFMB_RS09385
subclass of: SO_0000673
so part of: BcFMB_RS09385
location: 5190..5612
location: region:5190-5612:1
so has part: feature:5190-5612:1:exon

WP_099721789.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5190-5612:1:exon

BcFMB_RS09390
type: Gene
subclass of: SO_0000704
RO_0002162: 35760
locus tag: BcFMB_RS09390
old locus tag: BcFMB_09265
so part of: sequence
location: 5605..5967
location: region:5605-5967:1
so has part: feature:5605-5967:1:exon
subclass of: SO_0000010

position:5605:1
position: 5605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5967:1
position: 5967
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5605-5967:1:exon

BcFMB_RS09390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 35760
locus tag: BcFMB_RS09390
old locus tag: BcFMB_09265
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSELGFSIPFWAWVLFALVVALFVAVLVLLQKSSKALVDMRRVLLSHKRDGVTLSEEELQKVSSGHRYGNRAAFTFEASLVDATGAALIMSEIAELFHLEPVDVQPQQHGRYYKLRYRKR
SIO_010081: BcFMB_RS09390
subclass of: SO_0000673
so part of: BcFMB_RS09390
location: 5605..5967
location: region:5605-5967:1
so has part: feature:5605-5967:1:exon

WP_099721790.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5605-5967:1:exon

BcFMB_RS09395
type: Gene
subclass of: SO_0000704
RO_0002162: 35760
locus tag: BcFMB_RS09395
old locus tag: BcFMB_09270
so part of: sequence
location: 5970..6731
location: region:5970-6731:1
so has part: feature:5970-6731:1:exon
subclass of: SO_0000010

position:5970:1
position: 5970
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6731:1
position: 6731
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5970-6731:1:exon

BcFMB_RS09395
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 35760
locus tag: BcFMB_RS09395
old locus tag: BcFMB_09270
inference: COORDINATES: protein motif:HMM:NF013727.2
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: FtsK/SpoIIIE domain-containing protein
translation: MRWPWNRTADDIDTINLGVDTGRRSVTCRADVHTYILGATGSGKGSVAANWLKSQSAYIHEGLVKVDFVDLKWGMEAAMYSDALLAGTATDIEQTLAMFKEIREELAKRAEAARGHTRLVKPTERNPRILLVIDEATSLTSAGNKKQTDESMQLLAELLRVGRALGLVVVAMSQNPRVQALSVRDLFPQRIALRLASESEARMALGDDAVDAGAAPWRIPVDRPGVGYLADMDSGQIQRFHAAYITDEELRRM
SIO_010081: BcFMB_RS09395
subclass of: SO_0000673
so part of: BcFMB_RS09395
location: 5970..6731
location: region:5970-6731:1
so has part: feature:5970-6731:1:exon

WP_099721791.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5970-6731:1:exon

BcFMB_RS09400
type: Gene
subclass of: SO_0000704
RO_0002162: 35760
locus tag: BcFMB_RS09400
old locus tag: BcFMB_09275
so part of: sequence
location: 6904..8055
location: region:6904-8055:1
so has part: feature:6904-8055:1:exon
subclass of: SO_0000010

position:6904:1
position: 6904
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8055:1
position: 8055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6904-8055:1:exon

BcFMB_RS09400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 35760
locus tag: BcFMB_RS09400
old locus tag: BcFMB_09275
inference: COORDINATES: protein motif:HMM:NF014537.2
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation factor domain-containing protein
translation: MTVEISVDEATLVARRMQPCSVSRWPEIAEKIVGSLADALRLPELLEPPVDARSCPAGYTHGYQYGDDAYMCIAYHYAEPEMGVIVKMSATAFALWRQCSAKHIDGFIRMAAEGAEAVGCNVRLSRLDVTADYIDEGDWTVTDIYSALVNKSAAAYYAKPGGASVTWVRHRSRPRSFERDGKTGTMYLGVASKGSNAHMRLYDKKREQLERHGRYYGRAEAVNSWIRLEVVLTNKYAHQATDVLQDVEDADELKHCLADMILQRYSFFRLRAGKRSTPLPPTALLLDPERLRLPLSSVEPMRELEDAYLYLRDGSGLYSLLLRVQMVWGTEAFEAVWGQLRAEYTFYKPSRSVRAMNDKKTAEYRKKYPTVSDFIERVRWRNE
SIO_010081: BcFMB_RS09400
subclass of: SO_0000673
so part of: BcFMB_RS09400
location: 6904..8055
location: region:6904-8055:1
so has part: feature:6904-8055:1:exon

WP_099721792.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6904-8055:1:exon

BcFMB_RS09405
type: Gene
subclass of: SO_0000704
RO_0002162: 35760
locus tag: BcFMB_RS09405
old locus tag: BcFMB_09280
so part of: sequence
location: complement(8080..8367)
location: region:8080-8367:-1
so has part: feature:8080-8367:-1:exon
subclass of: SO_0000010

position:8080:-1
position: 8080
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8367:-1
position: 8367
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8080-8367:-1:exon

BcFMB_RS09405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 35760
locus tag: BcFMB_RS09405
old locus tag: BcFMB_09280
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIEVATTAKDRKIAAIREIQESMVKKGNKVALSTLKKQLAQPRKDWLSDQEQLREAIRSYHDDEGHSWSETALHFHMSQGAVRQRAYRARNDRAQ
SIO_010081: BcFMB_RS09405
subclass of: SO_0000673
so part of: BcFMB_RS09405
location: complement(8080..8367)
location: region:8080-8367:-1
so has part: feature:8080-8367:-1:exon

WP_099721793.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8080-8367:-1:exon

BcFMB_RS09410
type: Gene
subclass of: SO_0000704
RO_0002162: 35760
locus tag: BcFMB_RS09410
so part of: sequence
location: complement(8364..9281)
location: region:8364-9281:-1
so has part: feature:8364-9281:-1:exon
subclass of: SO_0000010

position:8364:-1
position: 8364
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9281:-1
position: 9281
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8364-9281:-1:exon

BcFMB_RS09410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 35760
locus tag: BcFMB_RS09410
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010840486.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MNQQAQTAGLHHFWTQPTLYLPLRPLCTNDFIEGTYRQAREKALEGYRYIEANPTAVSDLLVVDIDDSNARTIALWEHSGMLPNVIVENPANGHAHAVWALSEPFTRTEYAARKPLAFAAAITEGLRRSCDGDTGYSGLMTKNPLHDAWNAELVTDHLYSLGELSEHLEVSGDMPPQSWKRTKRRNTSGLGRNCHIFETARTWAYREIRKHWEDSEGLRIAILNHCMELNATELAASPLPTQEIAQIAKSIHKWIVTKSRMWHDGPAVYEATFIAIQSARAKKRGQKYQAIYKECAELLKEMNIS
SIO_010081: BcFMB_RS09410
subclass of: SO_0000673
so part of: BcFMB_RS09410
location: complement(8364..9281)
location: region:8364-9281:-1
so has part: feature:8364-9281:-1:exon

WP_099721794.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8364-9281:-1:exon

BcFMB_RS09415
type: Gene
subclass of: SO_0000704
RO_0002162: 35760
locus tag: BcFMB_RS09415
old locus tag: BcFMB_09285
so part of: sequence
location: 9422..10588
location: region:9422-10588:1
so has part: feature:9422-10588:1:exon
subclass of: SO_0000010

position:9422:1
position: 9422
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10588:1
position: 10588
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9422-10588:1:exon

BcFMB_RS09415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 35760
locus tag: BcFMB_RS09415
old locus tag: BcFMB_09285
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005940092.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: adenine-specific methyltransferase EcoRI family protein
translation: MANNTSLGSARNAKNDEFYTQYSDIESEMNAYVELNPDVFRGKTILLPCDDPEWSNFTKYFAANFTRFGLKKLISTSYAYSVGSQQLTLFEASSPLYDERKHANHGKLFILTHDTDDSGKVDTDDVEFMGYLEGDGDFRSPEVCKLRDEADIIITNPPFSLFRDFLAWILDARKQFVILGNMNAITYKEVFPYLKDNRFWLGYKSLNGDMYFTVSERYQHWLVEHKKEGSAYKIIDGVVMGRLASACWFTNIDHGRRHEVMQLDTMAHNLKFNSRLKKKLEKDYGSDEYPHYDNYDAIEVPFTECIPSDYDGMMGVPITFMDKYNPDQFQIVGMAKRGPGDPKLRSRVYTLSDYSNYSDLNAGPVIMVDGEPKNTYPRILIRPIKDSR
SIO_010081: BcFMB_RS09415
subclass of: SO_0000673
so part of: BcFMB_RS09415
location: 9422..10588
location: region:9422-10588:1
so has part: feature:9422-10588:1:exon

WP_099721795.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9422-10588:1:exon

BcFMB_RS09945
type: Gene
subclass of: SO_0000704
RO_0002162: 35760
locus tag: BcFMB_RS09945
pseudo: true
so part of: sequence
location: 10685..>10825
location: region:10685-10825:1
so has part: feature:10685-10825:1:exon
subclass of: SO_0000010

position:10685:1
position: 10685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10825:1
position: 10825
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10685-10825:1:exon

BcFMB_RS09945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 35760
locus tag: BcFMB_RS09945
inference: COORDINATES: protein motif:HMM:NF015210.2
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: HNH endonuclease
SIO_010081: BcFMB_RS09945
subclass of: SO_0000673
so part of: BcFMB_RS09945
location: 10685..>10825
location: region:10685-10825:1
so has part: feature:10685-10825:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10685-10825:1:exon