Haloferax gibbonsii strain ARA6 plasmid pHG4, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.
Submitted (29-JUN-2015) Biociencias, Universidade do Estado do Rio de Janeiro, Boulevard 28 de Setembro, no 87, fundos, 4 andar, Departamento de Bioquimica, Laboratoio de Toxicologia e Biologia Molecular, Vila Isabel, Rio de Janeiro, RJ 20.551-030, Brazil
REFSEQ INFORMATION: The reference sequence is identical to\nCP011951.1.\nBacteria available from Colecao de Micro-organismos de Referencia\nem Vigilancia Sanitaria located at Instituto Nacional de Controle\nde Qualidade em Saude - INCQS/FIOCRUZ under registration code\nP3473.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: A5Miseq + Geneious v. unspecified\nGenome Coverage :: 450x\nSequencing Technology :: Illumina Miseq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/23/2022 02:41:17\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,930\nCDSs (total) :: 3,865\nGenes (coding) :: 3,844\nCDSs (with protein) :: 3,844\nGenes (RNA) :: 65\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 57\nncRNAs :: 2\nPseudo Genes (total) :: 21\nCDSs (without protein) :: 21\nPseudo Genes (ambiguous residues) :: 0 of 21\nPseudo Genes (frameshifted) :: 13 of 21\nPseudo Genes (incomplete) :: 13 of 21\nPseudo Genes (internal stop) :: 6 of 21\nPseudo Genes (multiple problems) :: 8 of 21\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF013209.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007541962.1
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
rhomboid family intramembrane serine protease
COORDINATES: protein motif:HMM:NF040371.1
COORDINATES: protein motif:HMM:NF016831.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013035686.1
COORDINATES: similar to AA sequence:RefSeq:WP_004045434.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_008313456.1
COORDINATES: similar to AA sequence:RefSeq:WP_007981205.1
COORDINATES: similar to AA sequence:RefSeq:WP_013876038.1
ribonuclease H-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006167230.1
COORDINATES: similar to AA sequence:RefSeq:WP_007139981.1
COORDINATES: similar to AA sequence:RefSeq:WP_007139982.1
COORDINATES: similar to AA sequence:RefSeq:WP_006054134.1
COORDINATES: protein motif:HMM:NF013964.2
GO:0004519 - endonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF021524.2
COORDINATES: similar to AA sequence:RefSeq:WP_008323137.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035700.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006168173.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004043317.1
COORDINATES: similar to AA sequence:RefSeq:WP_008319080.1