Haloferax gibbonsii strain ARA6 plasmid pHG3, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.
Submitted (29-JUN-2015) Biociencias, Universidade do Estado do Rio de Janeiro, Boulevard 28 de Setembro, no 87, fundos, 4 andar, Departamento de Bioquimica, Laboratoio de Toxicologia e Biologia Molecular, Vila Isabel, Rio de Janeiro, RJ 20.551-030, Brazil
REFSEQ INFORMATION: The reference sequence is identical to\nCP011950.1.\nBacteria available from Colecao de Micro-organismos de Referencia\nem Vigilancia Sanitaria located at Instituto Nacional de Controle\nde Qualidade em Saude - INCQS/FIOCRUZ under registration code\nP3473.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: A5Miseq + Geneious v. unspecified\nGenome Coverage :: 450x\nSequencing Technology :: Illumina Miseq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/23/2022 02:41:17\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,930\nCDSs (total) :: 3,865\nGenes (coding) :: 3,844\nCDSs (with protein) :: 3,844\nGenes (RNA) :: 65\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 57\nncRNAs :: 2\nPseudo Genes (total) :: 21\nCDSs (without protein) :: 21\nPseudo Genes (ambiguous residues) :: 0 of 21\nPseudo Genes (frameshifted) :: 13 of 21\nPseudo Genes (incomplete) :: 13 of 21\nPseudo Genes (internal stop) :: 6 of 21\nPseudo Genes (multiple problems) :: 8 of 21\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007274031.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013440732.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008322111.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011487803.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011487802.1
COORDINATES: similar to AA sequence:RefSeq:WP_011830468.1
COORDINATES: similar to AA sequence:RefSeq:WP_008326364.1
COORDINATES: similar to AA sequence:RefSeq:WP_008318692.1
COORDINATES: protein motif:HMM:NF012789.2
COORDINATES: similar to AA sequence:RefSeq:WP_006181071.1
COORDINATES: similar to AA sequence:RefSeq:WP_007108991.1
COORDINATES: similar to AA sequence:RefSeq:WP_008850066.1
COORDINATES: similar to AA sequence:RefSeq:WP_004041038.1
COORDINATES: similar to AA sequence:RefSeq:WP_004972018.1
COORDINATES: similar to AA sequence:RefSeq:WP_013875691.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594405.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007274249.1
COORDINATES: similar to AA sequence:RefSeq:WP_008895754.1
COORDINATES: protein motif:HMM:NF024771.2
mandelate racemase/muconate lactonizing enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008385377.1
COORDINATES: protein motif:HMM:NF016777.2
COORDINATES: protein motif:HMM:NF024808.2
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: similar to AA sequence:RefSeq:WP_004048297.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945491.1
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006599999.1
SMP-30/gluconolactonase/LRE family protein
COORDINATES: protein motif:HMM:NF016906.2
LamG-like jellyroll fold domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008607002.1
carbohydrate-binding family 9-like protein
COORDINATES: similar to AA sequence:RefSeq:WP_008006250.1
COORDINATES: similar to AA sequence:RefSeq:WP_006106766.1
COORDINATES: similar to AA sequence:RefSeq:WP_006106767.1
COORDINATES: similar to AA sequence:RefSeq:WP_007693915.1
GO:0050043 - lactate racemase activity [Evidence IEA]
lactate racemase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008313798.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004968193.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184793.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111082.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183369.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
transcription initiation factor IIB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004062100.1
COORDINATES: similar to AA sequence:RefSeq:WP_006185457.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: protein motif:HMM:NF014505.2
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004966897.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008458787.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458788.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458789.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458790.1
COORDINATES: protein motif:HMM:NF016232.2
COORDINATES: protein motif:HMM:NF024589.2
COORDINATES: similar to AA sequence:RefSeq:WP_004968205.1
COORDINATES: similar to AA sequence:RefSeq:WP_007276448.1
COORDINATES: similar to AA sequence:RefSeq:WP_011570388.1
COORDINATES: similar to AA sequence:RefSeq:WP_008608106.1
COORDINATES: similar to AA sequence:RefSeq:WP_020222645.1
COORDINATES: similar to AA sequence:RefSeq:WP_008608108.1
COORDINATES: similar to AA sequence:RefSeq:WP_008322173.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094382.1
COORDINATES: similar to AA sequence:RefSeq:WP_007542231.1
COORDINATES: similar to AA sequence:RefSeq:WP_014732601.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043169.1
helix-turn-helix transcriptional regulator