Streptomyces mobaraensis strain DSM 40587 plasmid pDSM40587, complete sequence.
Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.
Submitted (16-SEP-2021) State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP083591.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: ABySS v. MAY-2021\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 469.0x\nSequencing Technology :: Illumina NovaSeq; PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/16/2022 07:22:29\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 6,728\nCDSs (total) :: 6,634\nGenes (coding) :: 6,447\nCDSs (with protein) :: 6,447\nGenes (RNA) :: 94\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 70\nncRNAs :: 3\nPseudo Genes (total) :: 187\nCDSs (without protein) :: 187\nPseudo Genes (ambiguous residues) :: 0 of 187\nPseudo Genes (frameshifted) :: 61 of 187\nPseudo Genes (incomplete) :: 148 of 187\nPseudo Genes (internal stop) :: 7 of 187\nPseudo Genes (multiple problems) :: 29 of 187\nCRISPR Arrays :: 6\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Streptoverticillium ladakanum Hanka et al. 1966 (Approved Lists 1980)
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_018560697.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF022388.2
COORDINATES: similar to AA sequence:RefSeq:WP_019434638.1
COORDINATES: similar to AA sequence:RefSeq:WP_009998263.1
COORDINATES: protein motif:HMM:NF039764.1
DUF6415 family natural product biosynthesis protein
COORDINATES: similar to AA sequence:RefSeq:WP_014180154.1
COORDINATES: similar to AA sequence:RefSeq:WP_006346954.1
COORDINATES: similar to AA sequence:RefSeq:WP_003979831.1
COORDINATES: similar to AA sequence:RefSeq:WP_010352038.1
COORDINATES: similar to AA sequence:RefSeq:WP_003952468.1
COORDINATES: protein motif:HMM:NF039695.1
COORDINATES: similar to AA sequence:RefSeq:WP_016638440.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018468582.1